DC-Build-Header: elmerfem 6.1.0.svn.5272.dfsg-1 / Sun Sep 11 12:28:08 +0200 2011 Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-101.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ elmerfem 6.1.0.svn.5272.dfsg-1 (amd64) 11 Sep 2011 12:38 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: elmerfem Version: 6.1.0.svn.5272.dfsg-1 Source Version: 6.1.0.svn.5272.dfsg-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (62.2 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'elmerfem' packaging is maintained in the 'Git' version control system at: git://git.debian.org/git/debian-science/packages/elmerfem.git Need to get 21.6 MB of source archives. Get:1 http://localhost/debian/ sid/main elmerfem 6.1.0.svn.5272.dfsg-1 (dsc) [2084 B] Get:2 http://localhost/debian/ sid/main elmerfem 6.1.0.svn.5272.dfsg-1 (tar) [21.6 MB] Get:3 http://localhost/debian/ sid/main elmerfem 6.1.0.svn.5272.dfsg-1 (diff) [22.3 kB] Fetched 21.6 MB in 1s (19.3 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/elmerfem-h0kSBI/resolver-z1G3dA/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-e12370ed-5f7d-4d6c-bb40-e1765a4dbd75/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev | libblas-3gf.so, liblapack-dev | liblapack-3gf.so, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.4-dev, tcl8.4-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev | libgl-dev, libglu1-mesa-dev | libglu-dev, libopencascade-modeling-dev, libqt4-dev, qt4-qmake, libqt4-opengl-dev, libqwt5-qt4-dev, libvtk5-qt4-dev (>= 5.6), python-qt4-dev, libscotchmetis-dev, r-base-core, libavcodec-dev, libavutil-dev, libswscale-dev Merged Build-Conflicts: libatlas-base-dev, libatlas3gf-base Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev, liblapack-dev, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.4-dev, tcl8.4-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev, libglu1-mesa-dev, libopencascade-modeling-dev, libqt4-dev, qt4-qmake, libqt4-opengl-dev, libqwt5-qt4-dev, libvtk5-qt4-dev (>= 5.6), python-qt4-dev, libscotchmetis-dev, r-base-core, libavcodec-dev, libavutil-dev, libswscale-dev Filtered Build-Conflicts: libatlas-base-dev, libatlas3gf-base dpkg-deb: building package `sbuild-build-depends-elmerfem-dummy' in `/build/elmerfem-h0kSBI/resolver-XkvIsL/apt_archive/sbuild-build-depends-elmerfem-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install elmerfem build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser autoconf automake autotools-dev bsdmainutils ca-certificates comerr-dev debhelper diffstat file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian krb5-multidev libamd2.2.0 libarpack2 libarpack2-dev libaudio2 libavcodec-dev libavcodec53 libavformat-dev libavformat53 libavutil-dev libavutil51 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3gf libbtf1.1.0 libcairo2 libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3-gnutls libcxsparse2.2.3 libdatrie1 libdb4.8 libdbus-1-3 libdirac-encoder0 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgcrypt11 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libgl2ps-dev libgl2ps0 libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls26 libgpg-error0 libgsm1 libgssapi-krb5-2 libgssrpc4 libhdf5-serial-1.8.4 libhypre-2.4.0 libhypre-dev libibverbs-dev libibverbs1 libice-dev libice6 libidn11 libjpeg62 libjpeg8 libjpeg8-dev libjs-jquery libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-5 libkeyutils1 libklu1.1.0 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3gf liblcms1 libldap-2.4-2 libldl2.0.1 libmagic1 libmng1 libmp3lame0 libmumps-4.9.2 libmumps-dev libmumps-scotch-4.9.2 libmumps-scotch-dev libmysqlclient-dev libmysqlclient16 libncurses5-dev libnetcdf-dev libnetcdf6 libnuma1 libogg0 libopencascade-foundation-6.5.0 libopencascade-foundation-dev libopencascade-modeling-6.5.0 libopencascade-modeling-dev libopenjpeg2 libopenmpi-dev libopenmpi1.3 liborc-0.4-0 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libpython2.6 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libqwt5-qt4 libqwt5-qt4-dev libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libscalapack-mpi-dev libscalapack-mpi1 libschroedinger-1.0-0 libscotch-5.1 libscotch-dev libscotchmetis-dev libsm-dev libsm6 libspeex1 libsqlite3-0 libssl-dev libssl1.0.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale-dev libswscale2 libtasn1-3 libthai-data libthai0 libtheora0 libtiff4 libtiff4-dev libtiffxx0c2 libtorque2 libumfpack5.4.0 libunistring0 libva1 libvorbis0a libvorbisenc2 libvpx0 libvtk5-dev libvtk5-qt4-dev libvtk5.6 libvtk5.6-qt4 libx11-6 libx11-data libx11-dev libx264-116 libxau-dev libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxml2-dev libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm1 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common openmpi-bin openmpi-common openssl pkg-config po-debconf python python-dev python-minimal python-qt4-dev python-sip python-sip-dev python2.6 python2.6-dev python2.6-minimal qt4-linguist-tools qt4-qmake quilt r-base-core tcl8.4 tcl8.4-dev tcl8.5 tcl8.5-dev tk8.4 tk8.4-dev tk8.5 tk8.5-dev ttf-dejavu-core ucf unzip x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev Suggested packages: liblocale-gettext-perl autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation doc-base dh-make defoma gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff krb5-doc nas libfaad-dev libgsm1-dev libogg-dev libschroedinger-dev libspeex-dev libtheora-dev libvorbis-dev libraw1394-dev libdc1394-22-dev rng-tools gnutls-bin krb5-user hypre-doc liblcms-utils ncurses-doc netcdf-bin netcdf-doc opencascade-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp postgresql-doc-9.1 libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles qt4-qmlviewer firebird2.1-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt4-qtconfig scalapack-doc speex vtk-examples vtk-doc www-browser libmail-box-perl python-doc python-tk python2.6-doc binfmt-support procmail graphviz ess r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline tcl8.4-doc tcl8.5-doc tk8.4-doc tk8.5-doc gvfs-bin Recommended packages: curl wget lynx-cur autopoint atlas3-base dbus libgl1-mesa-dri libglib2.0-data shared-mime-info javascript-common x-ttcidfont-conf libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libqt4-sql-sqlite2 libqt4-sql-ibase libcups2 libsasl2-modules libssl-doc xml-core openmpi-checkpoint libmail-sendmail-perl r-recommended r-base-dev r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adduser autoconf automake autotools-dev bsdmainutils ca-certificates comerr-dev debhelper diffstat file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian krb5-multidev libamd2.2.0 libarpack2 libarpack2-dev libaudio2 libavcodec-dev libavcodec53 libavformat-dev libavformat53 libavutil-dev libavutil51 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3gf libbtf1.1.0 libcairo2 libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3-gnutls libcxsparse2.2.3 libdatrie1 libdb4.8 libdbus-1-3 libdirac-encoder0 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgcrypt11 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libgl2ps-dev libgl2ps0 libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls26 libgpg-error0 libgsm1 libgssapi-krb5-2 libgssrpc4 libhdf5-serial-1.8.4 libhypre-2.4.0 libhypre-dev libibverbs-dev libibverbs1 libice-dev libice6 libidn11 libjpeg62 libjpeg8 libjpeg8-dev libjs-jquery libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-5 libkeyutils1 libklu1.1.0 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3gf liblcms1 libldap-2.4-2 libldl2.0.1 libmagic1 libmng1 libmp3lame0 libmumps-4.9.2 libmumps-dev libmumps-scotch-4.9.2 libmumps-scotch-dev libmysqlclient-dev libmysqlclient16 libncurses5-dev libnetcdf-dev libnetcdf6 libnuma1 libogg0 libopencascade-foundation-6.5.0 libopencascade-foundation-dev libopencascade-modeling-6.5.0 libopencascade-modeling-dev libopenjpeg2 libopenmpi-dev libopenmpi1.3 liborc-0.4-0 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libpython2.6 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libqwt5-qt4 libqwt5-qt4-dev libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libscalapack-mpi-dev libscalapack-mpi1 libschroedinger-1.0-0 libscotch-5.1 libscotch-dev libscotchmetis-dev libsm-dev libsm6 libspeex1 libsqlite3-0 libssl-dev libssl1.0.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale-dev libswscale2 libtasn1-3 libthai-data libthai0 libtheora0 libtiff4 libtiff4-dev libtiffxx0c2 libtorque2 libumfpack5.4.0 libunistring0 libva1 libvorbis0a libvorbisenc2 libvpx0 libvtk5-dev libvtk5-qt4-dev libvtk5.6 libvtk5.6-qt4 libx11-6 libx11-data libx11-dev libx264-116 libxau-dev libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxml2-dev libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm1 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common openmpi-bin openmpi-common openssl pkg-config po-debconf python python-dev python-minimal python-qt4-dev python-sip python-sip-dev python2.6 python2.6-dev python2.6-minimal qt4-linguist-tools qt4-qmake quilt r-base-core sbuild-build-depends-elmerfem-dummy tcl8.4 tcl8.4-dev tcl8.5 tcl8.5-dev tk8.4 tk8.4-dev tk8.5 tk8.5-dev ttf-dejavu-core ucf unzip x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev 0 upgraded, 271 newly installed, 0 to remove and 0 not upgraded. Need to get 207 MB/207 MB of archives. After this operation, 659 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libssl1.0.0 libgpg-error0 libgcrypt11 libp11-kit0 libtasn1-3 libgnutls26 libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libgssrpc4 libidn11 libkadm5clnt-mit8 libkdb5-5 libkadm5srv-mit8 libsasl2-2 libldap-2.4-2 libpcre3 libxau6 x11-common libice6 libsm6 libxdmcp6 libxcb1 libx11-data libx11-6 libxt6 libaudio2 librtmp0 openssl ca-certificates libcurl3-gnutls libdatrie1 libdbus-1-3 libdrm2 libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libgfortran3 libglapi-mesa libxfixes3 libxdamage1 libxext6 libxxf86vm1 libgl1-mesa-glx libglu1-mesa libjpeg62 liblcms1 libmng1 libmp3lame0 libpixman-1-0 libpng12-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libglib2.0-0 libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libxss1 libdb4.8 adduser bsdmainutils groff-base libpopt0 man-db libmagic1 file gettext-base libsqlite3-0 libxml2 m4 mime-support python2.6-minimal python2.6 python-minimal python autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper diffstat gfortran-4.6 gfortran comerr-dev krb5-multidev libamd2.2.0 libblas3gf liblapack3gf libibverbs1 libnuma1 libtorque2 libopenmpi1.3 libarpack2 libavutil51 libdirac-encoder0 libgsm1 libopenjpeg2 liborc-0.4-0 libschroedinger-1.0-0 libspeex1 libogg0 libtheora0 libva1 libvorbis0a libvorbisenc2 libvpx0 libx264-116 libxvidcore4 libavcodec53 libavutil-dev libavcodec-dev libavformat53 libavformat-dev libblas-dev libbtf1.1.0 libcamd2.2.0 libccolamd2.7.1 libcolamd2.7.1 libcholmod1.7.1 libcsparse2.2.3 libcxsparse2.2.3 libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libftgl2 xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev mesa-common-dev x11proto-xext-dev libxext-dev libgl1-mesa-dev libglu1-mesa-dev libftgl-dev libgl2ps0 libgl2ps-dev libhdf5-serial-1.8.4 libice-dev libjpeg8 libjpeg8-dev libjs-jquery libklu1.1.0 liblapack-dev libldl2.0.1 mysql-common libmysqlclient16 libmysqlclient-dev libncurses5-dev libnetcdf6 libnetcdf-dev libpaper1 libpaper-utils libpng12-dev libpq5 libssl-dev libkrb5-dev libpq-dev libpython2.6 libqtcore4 libqt4-xml libqt4-dbus libqt4-network libqt4-script libqt4-sql libqt4-xmlpatterns libtiff4 libqtgui4 libqt4-declarative libqt4-designer libqt4-help libqt4-qt3support libqt4-scripttools libqt4-svg libqt4-test qt4-linguist-tools qt4-qmake libqt4-dev libqt4-opengl libqt4-opengl-dev libqwt5-qt4 libqwt5-qt4-dev libreadline6-dev libreadline-dev libsm-dev libumfpack5.4.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale2 libswscale-dev libtiffxx0c2 libtiff4-dev libvtk5.6 libxt-dev x11proto-scrnsaver-dev libxss-dev x11proto-render-dev libxrender-dev libxft-dev tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev libxml2-dev openmpi-common libibverbs-dev libopenmpi-dev mpi-default-dev libvtk5-dev libvtk5.6-qt4 libvtk5-qt4-dev python2.6-dev python-dev python-sip python-sip-dev python-qt4-dev quilt zip unzip xdg-utils r-base-core tcl8.4 tcl8.4-dev tk8.4 tk8.4-dev libarpack2-dev openmpi-bin mpi-default-bin libblacs-mpi1 libblacs-mpi-dev libhypre-2.4.0 libhypre-dev libscalapack-mpi1 libmumps-4.9.2 libscalapack-mpi-dev libmumps-dev libscotch-5.1 libmumps-scotch-4.9.2 libmumps-scotch-dev libopencascade-foundation-6.5.0 libopencascade-foundation-dev libopencascade-modeling-6.5.0 libopencascade-modeling-dev libscotch-dev libscotchmetis-dev sbuild-build-depends-elmerfem-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libssl1.0.0 amd64 1.0.0e-2 [1143 kB] Get:3 http://localhost/debian/ sid/main libgpg-error0 amd64 1.10-1 [66.6 kB] Get:4 http://localhost/debian/ sid/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:5 http://localhost/debian/ sid/main libp11-kit0 amd64 0.4-2 [45.2 kB] Get:6 http://localhost/debian/ sid/main libtasn1-3 amd64 2.9-4 [63.9 kB] Get:7 http://localhost/debian/ sid/main libgnutls26 amd64 2.12.10-1 [784 kB] Get:8 http://localhost/debian/ sid/main libkeyutils1 amd64 1.5.2-2 [8860 B] Get:9 http://localhost/debian/ sid/main libkrb5support0 amd64 1.9.1+dfsg-2 [47.1 kB] Get:10 http://localhost/debian/ sid/main libk5crypto3 amd64 1.9.1+dfsg-2 [111 kB] Get:11 http://localhost/debian/ sid/main libkrb5-3 amd64 1.9.1+dfsg-2 [381 kB] Get:12 http://localhost/debian/ sid/main libgssapi-krb5-2 amd64 1.9.1+dfsg-2 [147 kB] Get:13 http://localhost/debian/ sid/main libgssrpc4 amd64 1.9.1+dfsg-2 [85.4 kB] Get:14 http://localhost/debian/ sid/main libidn11 amd64 1.22-3 [165 kB] Get:15 http://localhost/debian/ sid/main libkadm5clnt-mit8 amd64 1.9.1+dfsg-2 [64.9 kB] Get:16 http://localhost/debian/ sid/main libkdb5-5 amd64 1.9.1+dfsg-2 [63.0 kB] Get:17 http://localhost/debian/ sid/main libkadm5srv-mit8 amd64 1.9.1+dfsg-2 [81.1 kB] Get:18 http://localhost/debian/ sid/main libsasl2-2 amd64 2.1.24~rc1.dfsg1+cvs2011-05-23-6 [119 kB] Get:19 http://localhost/debian/ sid/main libldap-2.4-2 amd64 2.4.25-3 [235 kB] Get:20 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:21 http://localhost/debian/ sid/main libxau6 amd64 1:1.0.6-3 [17.0 kB] Get:22 http://localhost/debian/ sid/main x11-common all 1:7.6+8 [276 kB] Get:23 http://localhost/debian/ sid/main libice6 amd64 2:1.0.7-2 [56.5 kB] Get:24 http://localhost/debian/ sid/main libsm6 amd64 2:1.2.0-2 [29.8 kB] Get:25 http://localhost/debian/ sid/main libxdmcp6 amd64 1:1.1.0-3 [22.9 kB] Get:26 http://localhost/debian/ sid/main libxcb1 amd64 1.7-3 [45.4 kB] Get:27 http://localhost/debian/ sid/main libx11-data all 2:1.4.4-1 [183 kB] Get:28 http://localhost/debian/ sid/main libx11-6 amd64 2:1.4.4-1 [889 kB] Get:29 http://localhost/debian/ sid/main libxt6 amd64 1:1.1.1-2 [207 kB] Get:30 http://localhost/debian/ sid/main libaudio2 amd64 1.9.2-9 [85.4 kB] Get:31 http://localhost/debian/ sid/main librtmp0 amd64 2.4~20110711.gitc28f1bab-1 [61.4 kB] Get:32 http://localhost/debian/ sid/main openssl amd64 1.0.0e-2 [679 kB] Get:33 http://localhost/debian/ sid/main ca-certificates all 20110502+nmu1 [174 kB] Get:34 http://localhost/debian/ sid/main libcurl3-gnutls amd64 7.21.7-2 [298 kB] Get:35 http://localhost/debian/ sid/main libdatrie1 amd64 0.2.4-3 [27.6 kB] Get:36 http://localhost/debian/ sid/main libdbus-1-3 amd64 1.4.14-1 [163 kB] Get:37 http://localhost/debian/ sid/main libdrm2 amd64 2.4.26-1 [428 kB] Get:38 http://localhost/debian/ sid/main libexpat1 amd64 2.0.1-7 [137 kB] Get:39 http://localhost/debian/ sid/main libfreetype6 amd64 2.4.6-2 [435 kB] Get:40 http://localhost/debian/ sid/main ucf all 3.0025+nmu2 [70.6 kB] Get:41 http://localhost/debian/ sid/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:42 http://localhost/debian/ sid/main fontconfig-config all 2.8.0-3 [221 kB] Get:43 http://localhost/debian/ sid/main libfontconfig1 amd64 2.8.0-3 [282 kB] Get:44 http://localhost/debian/ sid/main libgfortran3 amd64 4.6.1-10 [358 kB] Get:45 http://localhost/debian/ sid/main libglapi-mesa amd64 7.11-5 [55.1 kB] Get:46 http://localhost/debian/ sid/main libxfixes3 amd64 1:5.0-4 [21.5 kB] Get:47 http://localhost/debian/ sid/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:48 http://localhost/debian/ sid/main libxext6 amd64 2:1.3.0-3 [52.3 kB] Get:49 http://localhost/debian/ sid/main libxxf86vm1 amd64 1:1.1.1-2 [18.2 kB] Get:50 http://localhost/debian/ sid/main libgl1-mesa-glx amd64 7.11-5 [155 kB] Get:51 http://localhost/debian/ sid/main libglu1-mesa amd64 7.11-5 [220 kB] Get:52 http://localhost/debian/ sid/main libjpeg62 amd64 6b1-2 [94.1 kB] Get:53 http://localhost/debian/ sid/main liblcms1 amd64 1.19.dfsg-1 [111 kB] Get:54 http://localhost/debian/ sid/main libmng1 amd64 1.0.10-2 [235 kB] Get:55 http://localhost/debian/ sid/main libmp3lame0 amd64 3.98.4+repack2-6 [302 kB] Get:56 http://localhost/debian/ sid/main libpixman-1-0 amd64 0.22.2-1 [356 kB] Get:57 http://localhost/debian/ sid/main libpng12-0 amd64 1.2.46-3 [188 kB] Get:58 http://localhost/debian/ sid/main libxcb-render0 amd64 1.7-3 [16.3 kB] Get:59 http://localhost/debian/ sid/main libxcb-shm0 amd64 1.7-3 [9458 B] Get:60 http://localhost/debian/ sid/main libxrender1 amd64 1:0.9.6-2 [31.5 kB] Get:61 http://localhost/debian/ sid/main libcairo2 amd64 1.10.2-6.1 [948 kB] Get:62 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:63 http://localhost/debian/ sid/main libthai-data all 0.1.15-2 [201 kB] Get:64 http://localhost/debian/ sid/main libthai0 amd64 0.1.15-2 [42.9 kB] Get:65 http://localhost/debian/ sid/main libxft2 amd64 2.2.0-3 [58.1 kB] Get:66 http://localhost/debian/ sid/main fontconfig amd64 2.8.0-3 [334 kB] Get:67 http://localhost/debian/ sid/main libpango1.0-0 amd64 1.28.4-3 [442 kB] Get:68 http://localhost/debian/ sid/main libxss1 amd64 1:1.2.1-2 [16.9 kB] Get:69 http://localhost/debian/ sid/main libdb4.8 amd64 4.8.30-9 [694 kB] Get:70 http://localhost/debian/ sid/main adduser all 3.113 [218 kB] Get:71 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:72 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:73 http://localhost/debian/ sid/main libpopt0 amd64 1.16-1 [54.1 kB] Get:74 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:75 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:76 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:77 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:78 http://localhost/debian/ sid/main libsqlite3-0 amd64 3.7.7-2 [420 kB] Get:79 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:80 http://localhost/debian/ sid/main m4 amd64 1.4.16-2 [259 kB] Get:81 http://localhost/debian/ sid/main mime-support all 3.51-1 [35.0 kB] Get:82 http://localhost/debian/ sid/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:83 http://localhost/debian/ sid/main python2.6 amd64 2.6.7-4 [2483 kB] Get:84 http://localhost/debian/ sid/main python-minimal all 2.6.7-3 [39.2 kB] Get:85 http://localhost/debian/ sid/main python all 2.6.7-3 [177 kB] Get:86 http://localhost/debian/ sid/main autoconf all 2.68-1 [804 kB] Get:87 http://localhost/debian/ sid/main autotools-dev all 20110511.1 [73.8 kB] Get:88 http://localhost/debian/ sid/main automake all 1:1.11.1-1 [611 kB] Get:89 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:90 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:91 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:92 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:93 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:94 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:95 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:96 http://localhost/debian/ sid/main diffstat amd64 1.54-1 [29.0 kB] Get:97 http://localhost/debian/ sid/main gfortran-4.6 amd64 4.6.1-10 [5558 kB] Get:98 http://localhost/debian/ sid/main gfortran amd64 4:4.6.1-2 [1124 B] Get:99 http://localhost/debian/ sid/main comerr-dev amd64 2.1-1.42~WIP-2011-07-02-1 [42.4 kB] Get:100 http://localhost/debian/ sid/main krb5-multidev amd64 1.9.1+dfsg-2 [115 kB] Get:101 http://localhost/debian/ sid/main libamd2.2.0 amd64 1:3.4.0-2 [29.2 kB] Get:102 http://localhost/debian/ sid/main libblas3gf amd64 1.2.20110419-2 [292 kB] Get:103 http://localhost/debian/ sid/main liblapack3gf amd64 3.3.1-1 [4437 kB] Get:104 http://localhost/debian/ sid/main libibverbs1 amd64 1.1.5-1 [35.0 kB] Get:105 http://localhost/debian/ sid/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:106 http://localhost/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:107 http://localhost/debian/ sid/main libopenmpi1.3 amd64 1.4.3-2.1 [1439 kB] Get:108 http://localhost/debian/ sid/main libarpack2 amd64 2.1+parpack96.dfsg-3+b1 [289 kB] Get:109 http://localhost/debian/ sid/main libavutil51 amd64 4:0.7.1-5 [91.9 kB] Get:110 http://localhost/debian/ sid/main libdirac-encoder0 amd64 1.0.2-4 [388 kB] Get:111 http://localhost/debian/ sid/main libgsm1 amd64 1.0.13-3 [28.7 kB] Get:112 http://localhost/debian/ sid/main libopenjpeg2 amd64 1.3+dfsg-4 [79.5 kB] Get:113 http://localhost/debian/ sid/main liborc-0.4-0 amd64 1:0.4.14-1 [177 kB] Get:114 http://localhost/debian/ sid/main libschroedinger-1.0-0 amd64 1.0.10-2.1 [278 kB] Get:115 http://localhost/debian/ sid/main libspeex1 amd64 1.2~rc1-1 [60.4 kB] Get:116 http://localhost/debian/ sid/main libogg0 amd64 1.2.2~dfsg-1 [18.6 kB] Get:117 http://localhost/debian/ sid/main libtheora0 amd64 1.1.1+dfsg.1-3 [381 kB] Get:118 http://localhost/debian/ sid/main libva1 amd64 1.0.12-2 [40.3 kB] Get:119 http://localhost/debian/ sid/main libvorbis0a amd64 1.3.2-1 [107 kB] Get:120 http://localhost/debian/ sid/main libvorbisenc2 amd64 1.3.2-1 [144 kB] Get:121 http://localhost/debian/ sid/main libvpx0 amd64 0.9.7.p1-1 [268 kB] Get:122 http://localhost/debian/ sid/main libx264-116 amd64 2:0.116.2042+git178455c-1+b1 [413 kB] Get:123 http://localhost/debian/ sid/main libxvidcore4 amd64 2:1.3.2-5 [327 kB] Get:124 http://localhost/debian/ sid/main libavcodec53 amd64 4:0.7.1-5 [2711 kB] Get:125 http://localhost/debian/ sid/main libavutil-dev amd64 4:0.7.1-5 [135 kB] Get:126 http://localhost/debian/ sid/main libavcodec-dev amd64 4:0.7.1-5 [3144 kB] Get:127 http://localhost/debian/ sid/main libavformat53 amd64 4:0.7.1-5 [495 kB] Get:128 http://localhost/debian/ sid/main libavformat-dev amd64 4:0.7.1-5 [652 kB] Get:129 http://localhost/debian/ sid/main libblas-dev amd64 1.2.20110419-2 [311 kB] Get:130 http://localhost/debian/ sid/main libbtf1.1.0 amd64 1:3.4.0-2 [13.9 kB] Get:131 http://localhost/debian/ sid/main libcamd2.2.0 amd64 1:3.4.0-2 [27.7 kB] Get:132 http://localhost/debian/ sid/main libccolamd2.7.1 amd64 1:3.4.0-2 [31.0 kB] Get:133 http://localhost/debian/ sid/main libcolamd2.7.1 amd64 1:3.4.0-2 [22.2 kB] Get:134 http://localhost/debian/ sid/main libcholmod1.7.1 amd64 1:3.4.0-2 [456 kB] Get:135 http://localhost/debian/ sid/main libcsparse2.2.3 amd64 1:3.4.0-2 [29.8 kB] Get:136 http://localhost/debian/ sid/main libcxsparse2.2.3 amd64 1:3.4.0-2 [110 kB] Get:137 http://localhost/debian/ sid/main libexpat1-dev amd64 2.0.1-7 [221 kB] Get:138 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Get:139 http://localhost/debian/ sid/main libfreetype6-dev amd64 2.4.6-2 [797 kB] Get:140 http://localhost/debian/ sid/main pkg-config amd64 0.26-1 [59.5 kB] Get:141 http://localhost/debian/ sid/main libfontconfig1-dev amd64 2.8.0-3 [833 kB] Get:142 http://localhost/debian/ sid/main libftgl2 amd64 2.1.3~rc5-3 [110 kB] Get:143 http://localhost/debian/ sid/main xorg-sgml-doctools all 1:1.8-2 [20.0 kB] Get:144 http://localhost/debian/ sid/main x11proto-core-dev all 7.0.22-1 [323 kB] Get:145 http://localhost/debian/ sid/main libxau-dev amd64 1:1.0.6-3 [20.5 kB] Get:146 http://localhost/debian/ sid/main libxdmcp-dev amd64 1:1.1.0-3 [56.5 kB] Get:147 http://localhost/debian/ sid/main x11proto-input-dev all 2.0.2-2 [82.3 kB] Get:148 http://localhost/debian/ sid/main x11proto-kb-dev all 1.0.5-2 [27.5 kB] Get:149 http://localhost/debian/ sid/main xtrans-dev all 1.2.6-2 [101 kB] Get:150 http://localhost/debian/ sid/main libpthread-stubs0 amd64 0.3-2.1 [3232 B] Get:151 http://localhost/debian/ sid/main libpthread-stubs0-dev amd64 0.3-2.1 [3554 B] Get:152 http://localhost/debian/ sid/main libxcb1-dev amd64 1.7-3 [83.1 kB] Get:153 http://localhost/debian/ sid/main libx11-dev amd64 2:1.4.4-1 [3383 kB] Get:154 http://localhost/debian/ sid/main mesa-common-dev amd64 7.11-5 [342 kB] Get:155 http://localhost/debian/ sid/main x11proto-xext-dev all 7.2.0-3 [255 kB] Get:156 http://localhost/debian/ sid/main libxext-dev amd64 2:1.3.0-3 [167 kB] Get:157 http://localhost/debian/ sid/main libgl1-mesa-dev amd64 7.11-5 [31.1 kB] Get:158 http://localhost/debian/ sid/main libglu1-mesa-dev amd64 7.11-5 [295 kB] Get:159 http://localhost/debian/ sid/main libftgl-dev amd64 2.1.3~rc5-3 [903 kB] Get:160 http://localhost/debian/ sid/main libgl2ps0 amd64 1.3.6-1 [38.6 kB] Get:161 http://localhost/debian/ sid/main libgl2ps-dev amd64 1.3.6-1 [5200 B] Get:162 http://localhost/debian/ sid/main libhdf5-serial-1.8.4 amd64 1.8.4-patch1-3 [1466 kB] Get:163 http://localhost/debian/ sid/main libice-dev amd64 2:1.0.7-2 [143 kB] Get:164 http://localhost/debian/ sid/main libjpeg8 amd64 8c-2 [132 kB] Get:165 http://localhost/debian/ sid/main libjpeg8-dev amd64 8c-2 [241 kB] Get:166 http://localhost/debian/ sid/main libjs-jquery all 1.6.2-1 [107 kB] Get:167 http://localhost/debian/ sid/main libklu1.1.0 amd64 1:3.4.0-2 [109 kB] Get:168 http://localhost/debian/ sid/main liblapack-dev amd64 3.3.1-1 [4881 kB] Get:169 http://localhost/debian/ sid/main libldl2.0.1 amd64 1:3.4.0-2 [12.5 kB] Get:170 http://localhost/debian/ sid/main mysql-common all 5.1.58-1 [75.0 kB] Get:171 http://localhost/debian/ sid/main libmysqlclient16 amd64 5.1.58-1 [1983 kB] Get:172 http://localhost/debian/ sid/main libmysqlclient-dev amd64 5.1.58-1 [3255 kB] Get:173 http://localhost/debian/ sid/main libncurses5-dev amd64 5.9-1 [507 kB] Get:174 http://localhost/debian/ sid/main libnetcdf6 amd64 1:4.1.1-5 [520 kB] Get:175 http://localhost/debian/ sid/main libnetcdf-dev amd64 1:4.1.1-5 [660 kB] Get:176 http://localhost/debian/ sid/main libpaper1 amd64 1.1.24+nmu1 [21.8 kB] Get:177 http://localhost/debian/ sid/main libpaper-utils amd64 1.1.24+nmu1 [18.1 kB] Get:178 http://localhost/debian/ sid/main libpng12-dev amd64 1.2.46-3 [265 kB] Get:179 http://localhost/debian/ sid/main libpq5 amd64 9.1~rc1-3 [469 kB] Get:180 http://localhost/debian/ sid/main libssl-dev amd64 1.0.0e-2 [1631 kB] Get:181 http://localhost/debian/ sid/main libkrb5-dev amd64 1.9.1+dfsg-2 [38.4 kB] Get:182 http://localhost/debian/ sid/main libpq-dev amd64 9.1~rc1-3 [551 kB] Get:183 http://localhost/debian/ sid/main libpython2.6 amd64 2.6.7-4 [1087 kB] Get:184 http://localhost/debian/ sid/main libqtcore4 amd64 4:4.7.3-8 [2789 kB] Get:185 http://localhost/debian/ sid/main libqt4-xml amd64 4:4.7.3-8 [147 kB] Get:186 http://localhost/debian/ sid/main libqt4-dbus amd64 4:4.7.3-8 [275 kB] Get:187 http://localhost/debian/ sid/main libqt4-network amd64 4:4.7.3-8 [736 kB] Get:188 http://localhost/debian/ sid/main libqt4-script amd64 4:4.7.3-8 [1048 kB] Get:189 http://localhost/debian/ sid/main libqt4-sql amd64 4:4.7.3-8 [150 kB] Get:190 http://localhost/debian/ sid/main libqt4-xmlpatterns amd64 4:4.7.3-8 [1520 kB] Get:191 http://localhost/debian/ sid/main libtiff4 amd64 3.9.5-1 [200 kB] Get:192 http://localhost/debian/ sid/main libqtgui4 amd64 4:4.7.3-8 [5152 kB] Get:193 http://localhost/debian/ sid/main libqt4-declarative amd64 4:4.7.3-8 [1330 kB] Get:194 http://localhost/debian/ sid/main libqt4-designer amd64 4:4.7.3-8 [4530 kB] Get:195 http://localhost/debian/ sid/main libqt4-help amd64 4:4.7.3-8 [283 kB] Get:196 http://localhost/debian/ sid/main libqt4-qt3support amd64 4:4.7.3-8 [1376 kB] Get:197 http://localhost/debian/ sid/main libqt4-scripttools amd64 4:4.7.3-8 [313 kB] Get:198 http://localhost/debian/ sid/main libqt4-svg amd64 4:4.7.3-8 [211 kB] Get:199 http://localhost/debian/ sid/main libqt4-test amd64 4:4.7.3-8 [98.9 kB] Get:200 http://localhost/debian/ sid/main qt4-linguist-tools amd64 4:4.7.3-8 [1147 kB] Get:201 http://localhost/debian/ sid/main qt4-qmake amd64 4:4.7.3-8 [1635 kB] Get:202 http://localhost/debian/ sid/main libqt4-dev amd64 4:4.7.3-8 [4359 kB] Get:203 http://localhost/debian/ sid/main libqt4-opengl amd64 4:4.7.3-8 [388 kB] Get:204 http://localhost/debian/ sid/main libqt4-opengl-dev amd64 4:4.7.3-8 [56.7 kB] Get:205 http://localhost/debian/ sid/main libqwt5-qt4 amd64 5.2.2-1 [320 kB] Get:206 http://localhost/debian/ sid/main libqwt5-qt4-dev amd64 5.2.2-1 [106 kB] Get:207 http://localhost/debian/ sid/main libreadline6-dev amd64 6.2-4 [263 kB] Get:208 http://localhost/debian/ sid/main libreadline-dev amd64 6.2-4 [892 B] Get:209 http://localhost/debian/ sid/main libsm-dev amd64 2:1.2.0-2 [101 kB] Get:210 http://localhost/debian/ sid/main libumfpack5.4.0 amd64 1:3.4.0-2 [388 kB] Get:211 http://localhost/debian/ sid/main libsuitesparse-dev amd64 1:3.4.0-2 [1578 kB] Get:212 http://localhost/debian/ sid/main libsuperlu3 amd64 3.0+20070106-3 [170 kB] Get:213 http://localhost/debian/ sid/main libsuperlu3-dev amd64 3.0+20070106-3 [573 kB] Get:214 http://localhost/debian/ sid/main libswscale2 amd64 4:0.7.1-5 [120 kB] Get:215 http://localhost/debian/ sid/main libswscale-dev amd64 4:0.7.1-5 [137 kB] Get:216 http://localhost/debian/ sid/main libtiffxx0c2 amd64 3.9.5-1 [61.7 kB] Get:217 http://localhost/debian/ sid/main libtiff4-dev amd64 3.9.5-1 [334 kB] Get:218 http://localhost/debian/ sid/main libvtk5.6 amd64 5.6.1-6.1 [14.0 MB] Get:219 http://localhost/debian/ sid/main libxt-dev amd64 1:1.1.1-2 [512 kB] Get:220 http://localhost/debian/ sid/main x11proto-scrnsaver-dev all 1.2.1-1 [22.2 kB] Get:221 http://localhost/debian/ sid/main libxss-dev amd64 1:1.2.1-2 [22.3 kB] Get:222 http://localhost/debian/ sid/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:223 http://localhost/debian/ sid/main libxrender-dev amd64 1:0.9.6-2 [39.7 kB] Get:224 http://localhost/debian/ sid/main libxft-dev amd64 2.2.0-3 [71.5 kB] Get:225 http://localhost/debian/ sid/main tcl8.5 amd64 8.5.10-1 [1621 kB] Get:226 http://localhost/debian/ sid/main tcl8.5-dev amd64 8.5.10-1 [1080 kB] Get:227 http://localhost/debian/ sid/main tk8.5 amd64 8.5.10-1 [1181 kB] Get:228 http://localhost/debian/ sid/main tk8.5-dev amd64 8.5.10-1 [1000 kB] Get:229 http://localhost/debian/ sid/main libxml2-dev amd64 2.7.8.dfsg-4 [854 kB] Get:230 http://localhost/debian/ sid/main openmpi-common all 1.4.3-2.1 [92.2 kB] Get:231 http://localhost/debian/ sid/main libibverbs-dev amd64 1.1.5-1 [83.9 kB] Get:232 http://localhost/debian/ sid/main libopenmpi-dev amd64 1.4.3-2.1 [2790 kB] Get:233 http://localhost/debian/ sid/main mpi-default-dev amd64 0.6 [3202 B] Get:234 http://localhost/debian/ sid/main libvtk5-dev amd64 5.6.1-6.1 [2706 kB] Get:235 http://localhost/debian/ sid/main libvtk5.6-qt4 amd64 5.6.1-6.1 [473 kB] Get:236 http://localhost/debian/ sid/main libvtk5-qt4-dev amd64 5.6.1-6.1 [114 kB] Get:237 http://localhost/debian/ sid/main python2.6-dev amd64 2.6.7-4 [4832 kB] Get:238 http://localhost/debian/ sid/main python-dev all 2.6.7-3 [914 B] Get:239 http://localhost/debian/ sid/main python-sip amd64 4.12.4-1 [153 kB] Get:240 http://localhost/debian/ sid/main python-sip-dev amd64 4.12.4-1 [397 kB] Get:241 http://localhost/debian/ sid/main python-qt4-dev all 4.8.3-4 [242 kB] Get:242 http://localhost/debian/ sid/main quilt all 0.48-7 [354 kB] Get:243 http://localhost/debian/ sid/main zip amd64 3.0-4 [334 kB] Get:244 http://localhost/debian/ sid/main unzip amd64 6.0-5 [192 kB] Get:245 http://localhost/debian/ sid/main xdg-utils all 1.1.0~rc1-2 [70.2 kB] Get:246 http://localhost/debian/ sid/main r-base-core amd64 2.13.1-1 [15.2 MB] Get:247 http://localhost/debian/ sid/main tcl8.4 amd64 8.4.19-4 [1206 kB] Get:248 http://localhost/debian/ sid/main tcl8.4-dev amd64 8.4.19-4 [829 kB] Get:249 http://localhost/debian/ sid/main tk8.4 amd64 8.4.19-4 [1053 kB] Get:250 http://localhost/debian/ sid/main tk8.4-dev amd64 8.4.19-4 [880 kB] Get:251 http://localhost/debian/ sid/main libarpack2-dev amd64 2.1+parpack96.dfsg-3+b1 [719 kB] Get:252 http://localhost/debian/ sid/main openmpi-bin amd64 1.4.3-2.1 [166 kB] Get:253 http://localhost/debian/ sid/main mpi-default-bin amd64 0.6 [2610 B] Get:254 http://localhost/debian/ sid/main libblacs-mpi1 amd64 1.1-30.1 [65.8 kB] Get:255 http://localhost/debian/ sid/main libblacs-mpi-dev amd64 1.1-30.1 [76.2 kB] Get:256 http://localhost/debian/ sid/main libhypre-2.4.0 amd64 2.4.0b-7 [1752 kB] Get:257 http://localhost/debian/ sid/main libhypre-dev all 2.4.0b-7 [160 kB] Get:258 http://localhost/debian/ sid/main libscalapack-mpi1 amd64 1.8.0-6+b1 [3312 kB] Get:259 http://localhost/debian/ sid/main libmumps-4.9.2 amd64 4.9.2.dfsg-7 [2167 kB] Get:260 http://localhost/debian/ sid/main libscalapack-mpi-dev amd64 1.8.0-6+b1 [3577 kB] Get:261 http://localhost/debian/ sid/main libmumps-dev amd64 4.9.2.dfsg-7 [2322 kB] Get:262 http://localhost/debian/ sid/main libscotch-5.1 amd64 5.1.11.dfsg-7 [788 kB] Get:263 http://localhost/debian/ sid/main libmumps-scotch-4.9.2 amd64 4.9.2.dfsg-7 [2178 kB] Get:264 http://localhost/debian/ sid/main libmumps-scotch-dev amd64 4.9.2.dfsg-7 [2320 kB] Get:265 http://localhost/debian/ sid/main libopencascade-foundation-6.5.0 amd64 6.5.0.dfsg-2 [1584 kB] Get:266 http://localhost/debian/ sid/main libopencascade-foundation-dev all 6.5.0.dfsg-2 [1204 kB] Get:267 http://localhost/debian/ sid/main libopencascade-modeling-6.5.0 amd64 6.5.0.dfsg-2 [15.1 MB] Get:268 http://localhost/debian/ sid/main libopencascade-modeling-dev all 6.5.0.dfsg-2 [3486 kB] Get:269 http://localhost/debian/ sid/main libscotch-dev amd64 5.1.11.dfsg-7 [968 kB] Get:270 http://localhost/debian/ sid/main libscotchmetis-dev amd64 5.1.11.dfsg-7 [30.2 kB] Extracting templates from packages: 11% Extracting templates from packages: 22% Extracting templates from packages: 33% Extracting templates from packages: 44% Extracting templates from packages: 55% Extracting templates from packages: 66% Extracting templates from packages: 77% Extracting templates from packages: 88% Extracting templates from packages: 99% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 207 MB in 5s (41.4 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libssl1.0.0. Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0e-2_amd64.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.10-1_amd64.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... Selecting previously deselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.4-2_amd64.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.9-4_amd64.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.12.10-1_amd64.deb) ... 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WARNING: Skipping duplicate certificate ca-certificates.crt WARNING: Skipping duplicate certificate ca-certificates.crt WARNING: Skipping duplicate certificate spi-cacert-2008.pem WARNING: Skipping duplicate certificate spi-cacert-2008.pem WARNING: Skipping duplicate certificate spi-ca-2003.pem WARNING: Skipping duplicate certificate spi-ca-2003.pem WARNING: Skipping duplicate certificate signet_tsa1_pem.pem WARNING: Skipping duplicate certificate signet_tsa1_pem.pem WARNING: Skipping duplicate certificate signet_rootca_pem.pem WARNING: Skipping duplicate certificate signet_rootca_pem.pem WARNING: Skipping duplicate certificate signet_pca3_pem.pem WARNING: Skipping duplicate certificate signet_pca3_pem.pem WARNING: Skipping duplicate certificate signet_pca2_pem.pem WARNING: Skipping duplicate certificate signet_pca2_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa3_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa3_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa2_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa2_pem.pem WARNING: Skipping duplicate certificate signet_ca3_pem.pem WARNING: Skipping duplicate certificate signet_ca3_pem.pem WARNING: Skipping duplicate certificate signet_ca2_pem.pem WARNING: Skipping duplicate certificate signet_ca2_pem.pem WARNING: Skipping duplicate certificate signet_ca1_pem.pem WARNING: Skipping duplicate certificate signet_ca1_pem.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G3.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G3.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G2.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G2.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA.pem WARNING: Skipping duplicate certificate ePKI_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate ePKI_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate certSIGN_ROOT_CA.pem WARNING: Skipping duplicate certificate certSIGN_ROOT_CA.pem WARNING: Skipping duplicate certificate XRamp_Global_CA_Root.pem WARNING: Skipping duplicate certificate XRamp_Global_CA_Root.pem WARNING: Skipping duplicate certificate Wells_Fargo_Root_CA.pem WARNING: Skipping duplicate certificate Wells_Fargo_Root_CA.pem WARNING: Skipping duplicate certificate WellsSecure_Public_Root_Certificate_Authority.pem WARNING: Skipping duplicate certificate WellsSecure_Public_Root_Certificate_Authority.pem WARNING: Skipping duplicate certificate Visa_eCommerce_Root.pem WARNING: Skipping duplicate certificate Visa_eCommerce_Root.pem WARNING: Skipping duplicate certificate Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate 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WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate VeriSign_Universal_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate VeriSign_Universal_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem WARNING: Skipping duplicate certificate ValiCert_Class_2_VA.pem WARNING: Skipping duplicate certificate ValiCert_Class_2_VA.pem WARNING: Skipping duplicate certificate ValiCert_Class_1_VA.pem WARNING: Skipping duplicate certificate ValiCert_Class_1_VA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Hardware_Root_CA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Hardware_Root_CA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Email_Root_CA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Email_Root_CA.pem WARNING: Skipping duplicate certificate UTN_DATACorp_SGC_Root_CA.pem WARNING: Skipping duplicate certificate UTN_DATACorp_SGC_Root_CA.pem WARNING: Skipping duplicate certificate TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem WARNING: Skipping duplicate certificate TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem WARNING: Skipping duplicate certificate Thawte_Time_Stamping_CA.pem WARNING: Skipping duplicate certificate Thawte_Time_Stamping_CA.pem WARNING: Skipping duplicate certificate Thawte_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Premium_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Premium_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Personal_Freemail_CA.pem WARNING: Skipping duplicate certificate Thawte_Personal_Freemail_CA.pem WARNING: Skipping duplicate certificate Taiwan_GRCA.pem WARNING: Skipping duplicate certificate Taiwan_GRCA.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_2.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_2.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_1.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_1.pem WARNING: Skipping duplicate certificate TDC_OCES_Root_CA.pem WARNING: Skipping duplicate certificate TDC_OCES_Root_CA.pem WARNING: Skipping duplicate certificate TDC_Internet_Root_CA.pem WARNING: Skipping duplicate certificate TDC_Internet_Root_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter__Germany__Class_3_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter__Germany__Class_3_CA.pem WARNING: 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certificate Sonera_Class_2_Root_CA.pem WARNING: Skipping duplicate certificate Sonera_Class_1_Root_CA.pem WARNING: Skipping duplicate certificate Sonera_Class_1_Root_CA.pem WARNING: Skipping duplicate certificate Security_Communication_Root_CA.pem WARNING: Skipping duplicate certificate Security_Communication_Root_CA.pem WARNING: Skipping duplicate certificate Security_Communication_EV_RootCA1.pem WARNING: Skipping duplicate certificate Security_Communication_EV_RootCA1.pem WARNING: Skipping duplicate certificate Secure_Global_CA.pem WARNING: Skipping duplicate certificate Secure_Global_CA.pem WARNING: Skipping duplicate certificate SecureTrust_CA.pem WARNING: Skipping duplicate certificate SecureTrust_CA.pem WARNING: Skipping duplicate certificate SecureSign_RootCA11.pem WARNING: Skipping duplicate certificate SecureSign_RootCA11.pem WARNING: Skipping duplicate certificate S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem WARNING: Skipping duplicate certificate S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem WARNING: Skipping duplicate certificate RSA_Security_2048_v3.pem WARNING: Skipping duplicate certificate RSA_Security_2048_v3.pem WARNING: Skipping duplicate certificate RSA_Root_Certificate_1.pem WARNING: Skipping duplicate certificate RSA_Root_Certificate_1.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_3.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_3.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_2.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_2.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA.pem WARNING: Skipping duplicate certificate OISTE_WISeKey_Global_Root_GA_CA.pem WARNING: Skipping duplicate certificate OISTE_WISeKey_Global_Root_GA_CA.pem WARNING: Skipping duplicate certificate Network_Solutions_Certificate_Authority.pem WARNING: Skipping duplicate certificate Network_Solutions_Certificate_Authority.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libcurl3-gnutls (7.21.7-2) ... Setting up libdatrie1 (0.2.4-3) ... Setting up libdbus-1-3 (1.4.14-1) ... Setting up libdrm2 (2.4.26-1) ... Setting up libexpat1 (2.0.1-7) ... Setting up libfreetype6 (2.4.6-2) ... Setting up ucf (3.0025+nmu2) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3) ... Setting up libfontconfig1 (2.8.0-3) ... Setting up libgfortran3 (4.6.1-10) ... Setting up libglapi-mesa (7.11-5) ... Setting up libxfixes3 (1:5.0-4) ... Setting up libxdamage1 (1:1.1.3-2) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxxf86vm1 (1:1.1.1-2) ... Setting up libgl1-mesa-glx (7.11-5) ... Setting up libglu1-mesa (7.11-5) ... Setting up libjpeg62 (6b1-2) ... Setting up liblcms1 (1.19.dfsg-1) ... Setting up libmng1 (1.0.10-2) ... Setting up libmp3lame0 (3.98.4+repack2-6) ... Setting up libpixman-1-0 (0.22.2-1) ... Setting up libpng12-0 (1.2.46-3) ... Setting up libxcb-render0 (1.7-3) ... Setting up libxcb-shm0 (1.7-3) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libcairo2 (1.10.2-6.1) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libthai-data (0.1.15-2) ... Setting up libthai0 (0.1.15-2) ... Setting up libxft2 (2.2.0-3) ... Setting up fontconfig (2.8.0-3) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0 (1.28.4-3) ... Setting up libxss1 (1:1.2.1-2) ... Setting up libdb4.8 (4.8.30-9) ... Setting up adduser (3.113) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up libpopt0 (1.16-1) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libsqlite3-0 (3.7.7-2) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up m4 (1.4.16-2) ... Setting up mime-support (3.51-1) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up python2.6 (2.6.7-4) ... Setting up python-minimal (2.6.7-3) ... Setting up python (2.6.7-3) ... Setting up autoconf (2.68-1) ... Setting up autotools-dev (20110511.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up diffstat (1.54-1) ... Setting up gfortran-4.6 (4.6.1-10) ... Setting up gfortran (4:4.6.1-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up comerr-dev (2.1-1.42~WIP-2011-07-02-1) ... Setting up krb5-multidev (1.9.1+dfsg-2) ... Setting up libamd2.2.0 (1:3.4.0-2) ... Setting up libblas3gf (1.2.20110419-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up liblapack3gf (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libibverbs1 (1.1.5-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.3-2.1) ... Setting up libarpack2 (2.1+parpack96.dfsg-3+b1) ... Setting up libavutil51 (4:0.7.1-5) ... Setting up libdirac-encoder0 (1.0.2-4) ... Setting up libgsm1 (1.0.13-3) ... Setting up libopenjpeg2 (1.3+dfsg-4) ... Setting up liborc-0.4-0 (1:0.4.14-1) ... Setting up libschroedinger-1.0-0 (1.0.10-2.1) ... Setting up libspeex1 (1.2~rc1-1) ... Setting up libogg0 (1.2.2~dfsg-1) ... Setting up libtheora0 (1.1.1+dfsg.1-3) ... Setting up libva1 (1.0.12-2) ... Setting up libvorbis0a (1.3.2-1) ... Setting up libvorbisenc2 (1.3.2-1) ... Setting up libvpx0 (0.9.7.p1-1) ... Setting up libx264-116 (2:0.116.2042+git178455c-1+b1) ... Setting up libxvidcore4 (2:1.3.2-5) ... Setting up libavcodec53 (4:0.7.1-5) ... Setting up libavutil-dev (4:0.7.1-5) ... Setting up libavcodec-dev (4:0.7.1-5) ... Setting up libavformat53 (4:0.7.1-5) ... Setting up libavformat-dev (4:0.7.1-5) ... Setting up libblas-dev (1.2.20110419-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbtf1.1.0 (1:3.4.0-2) ... Setting up libcamd2.2.0 (1:3.4.0-2) ... Setting up libccolamd2.7.1 (1:3.4.0-2) ... Setting up libcolamd2.7.1 (1:3.4.0-2) ... Setting up libcholmod1.7.1 (1:3.4.0-2) ... Setting up libcsparse2.2.3 (1:3.4.0-2) ... Setting up libcxsparse2.2.3 (1:3.4.0-2) ... Setting up libexpat1-dev (2.0.1-7) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up libfreetype6-dev (2.4.6-2) ... Setting up pkg-config (0.26-1) ... Setting up libfontconfig1-dev (2.8.0-3) ... Setting up libftgl2 (2.1.3~rc5-3) ... Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-3) ... Setting up libxdmcp-dev (1:1.1.0-3) ... Setting up x11proto-input-dev (2.0.2-2) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-2.1) ... Setting up libpthread-stubs0-dev (0.3-2.1) ... Setting up libxcb1-dev (1.7-3) ... Setting up libx11-dev (2:1.4.4-1) ... Setting up mesa-common-dev (7.11-5) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up libgl1-mesa-dev (7.11-5) ... Setting up libglu1-mesa-dev (7.11-5) ... Setting up libftgl-dev (2.1.3~rc5-3) ... Setting up libgl2ps0 (1.3.6-1) ... Setting up libgl2ps-dev (1.3.6-1) ... Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-3) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libjpeg8 (8c-2) ... Setting up libjpeg8-dev (8c-2) ... Setting up libjs-jquery (1.6.2-1) ... Setting up libklu1.1.0 (1:3.4.0-2) ... Setting up liblapack-dev (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libldl2.0.1 (1:3.4.0-2) ... Setting up mysql-common (5.1.58-1) ... Setting up libmysqlclient16 (5.1.58-1) ... Setting up libmysqlclient-dev (5.1.58-1) ... Setting up libncurses5-dev (5.9-1) ... Setting up libnetcdf6 (1:4.1.1-5) ... Setting up libnetcdf-dev (1:4.1.1-5) ... Setting up libpaper1 (1.1.24+nmu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu1) ... Setting up libpng12-dev (1.2.46-3) ... Setting up libpq5 (9.1~rc1-3) ... Setting up libssl-dev (1.0.0e-2) ... Setting up libkrb5-dev (1.9.1+dfsg-2) ... Setting up libpq-dev (9.1~rc1-3) ... Setting up libpython2.6 (2.6.7-4) ... Setting up libqtcore4 (4:4.7.3-8) ... Setting up libqt4-xml (4:4.7.3-8) ... Setting up libqt4-dbus (4:4.7.3-8) ... Setting up libqt4-network (4:4.7.3-8) ... Setting up libqt4-script (4:4.7.3-8) ... Setting up libqt4-sql (4:4.7.3-8) ... Setting up libqt4-xmlpatterns (4:4.7.3-8) ... Setting up libtiff4 (3.9.5-1) ... Setting up libqtgui4 (4:4.7.3-8) ... Setting up libqt4-declarative (4:4.7.3-8) ... Setting up libqt4-designer (4:4.7.3-8) ... Setting up libqt4-help (4:4.7.3-8) ... Setting up libqt4-qt3support (4:4.7.3-8) ... Setting up libqt4-scripttools (4:4.7.3-8) ... Setting up libqt4-svg (4:4.7.3-8) ... Setting up libqt4-test (4:4.7.3-8) ... Setting up qt4-linguist-tools (4:4.7.3-8) ... update-alternatives: using /usr/bin/lupdate-qt4 to provide /usr/bin/lupdate (lupdate) in auto mode. update-alternatives: using /usr/bin/lrelease-qt4 to provide /usr/bin/lrelease (lrelease) in auto mode. Setting up qt4-qmake (4:4.7.3-8) ... update-alternatives: using /usr/bin/qmake-qt4 to provide /usr/bin/qmake (qmake) in auto mode. Setting up libqt4-dev (4:4.7.3-8) ... update-alternatives: using /usr/bin/moc-qt4 to provide /usr/bin/moc (moc) in auto mode. update-alternatives: warning: skip creation of /usr/share/man/man1/uic.1.gz because associated file /usr/share/man/man1/uic-qt4.1.gz (of link group uic) doesn't exist. update-alternatives: using /usr/bin/uic-qt4 to provide /usr/bin/uic (uic) in auto mode. Setting up libqt4-opengl (4:4.7.3-8) ... Setting up libqt4-opengl-dev (4:4.7.3-8) ... Setting up libqwt5-qt4 (5.2.2-1) ... Setting up libqwt5-qt4-dev (5.2.2-1) ... Setting up libreadline6-dev (6.2-4) ... Setting up libreadline-dev (6.2-4) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libumfpack5.4.0 (1:3.4.0-2) ... Setting up libsuitesparse-dev (1:3.4.0-2) ... Setting up libsuperlu3 (3.0+20070106-3) ... Setting up libsuperlu3-dev (3.0+20070106-3) ... Setting up libswscale2 (4:0.7.1-5) ... Setting up libswscale-dev (4:0.7.1-5) ... Setting up libtiffxx0c2 (3.9.5-1) ... Setting up libtiff4-dev (3.9.5-1) ... Setting up libvtk5.6 (5.6.1-6.1) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-scrnsaver-dev (1.2.1-1) ... Setting up libxss-dev (1:1.2.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libxft-dev (2.2.0-3) ... Setting up tcl8.5 (8.5.10-1) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tcl8.5-dev (8.5.10-1) ... Setting up tk8.5 (8.5.10-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up tk8.5-dev (8.5.10-1) ... Setting up libxml2-dev (2.7.8.dfsg-4) ... Setting up openmpi-common (1.4.3-2.1) ... Setting up libibverbs-dev (1.1.5-1) ... Setting up libopenmpi-dev (1.4.3-2.1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up mpi-default-dev (0.6) ... Setting up libvtk5-dev (5.6.1-6.1) ... Setting up libvtk5.6-qt4 (5.6.1-6.1) ... Setting up libvtk5-qt4-dev (5.6.1-6.1) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-dev (2.6.7-3) ... Setting up python-sip (4.12.4-1) ... Setting up python-sip-dev (4.12.4-1) ... Setting up python-qt4-dev (4.8.3-4) ... Setting up quilt (0.48-7) ... Setting up zip (3.0-4) ... Setting up unzip (6.0-5) ... Setting up xdg-utils (1.1.0~rc1-2) ... Setting up r-base-core (2.13.1-1) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up tcl8.4 (8.4.19-4) ... Setting up tcl8.4-dev (8.4.19-4) ... Setting up tk8.4 (8.4.19-4) ... Setting up tk8.4-dev (8.4.19-4) ... Setting up libarpack2-dev (2.1+parpack96.dfsg-3+b1) ... Setting up openmpi-bin (1.4.3-2.1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up mpi-default-bin (0.6) ... Setting up libblacs-mpi1 (1.1-30.1) ... Setting up libblacs-mpi-dev (1.1-30.1) ... Setting up libhypre-2.4.0 (2.4.0b-7) ... Setting up libhypre-dev (2.4.0b-7) ... Setting up libscalapack-mpi1 (1.8.0-6+b1) ... Setting up libmumps-4.9.2 (4.9.2.dfsg-7) ... Setting up libscalapack-mpi-dev (1.8.0-6+b1) ... Setting up libmumps-dev (4.9.2.dfsg-7) ... Setting up libscotch-5.1 (5.1.11.dfsg-7) ... Setting up libmumps-scotch-4.9.2 (4.9.2.dfsg-7) ... Setting up libmumps-scotch-dev (4.9.2.dfsg-7) ... Setting up libopencascade-foundation-6.5.0 (6.5.0.dfsg-2) ... Setting up libopencascade-foundation-dev (6.5.0.dfsg-2) ... Setting up libopencascade-modeling-6.5.0 (6.5.0.dfsg-2) ... Setting up libopencascade-modeling-dev (6.5.0.dfsg-2) ... Setting up libscotch-dev (5.1.11.dfsg-7) ... Setting up libscotchmetis-dev (5.1.11.dfsg-7) ... Setting up sbuild-build-depends-elmerfem-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: adduser_3.113 apt_0.8.15.6 apt-utils_0.8.15.6 autoconf_2.68-1 automake_1:1.11.1-1 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 clang_2.9-11 comerr-dev_2.1-1.42~WIP-2011-07-02-1 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffstat_1.54-1 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 krb5-multidev_1.9.1+dfsg-2 less_444-1 libacl1_2.2.51-3 libamd2.2.0_1:3.4.0-2 libarpack2_2.1+parpack96.dfsg-3+b1 libarpack2-dev_2.1+parpack96.dfsg-3+b1 libattr1_1:2.4.46-3 libaudio2_1.9.2-9 libavcodec-dev_4:0.7.1-5 libavcodec53_4:0.7.1-5 libavformat-dev_4:0.7.1-5 libavformat53_4:0.7.1-5 libavutil-dev_4:0.7.1-5 libavutil51_4:0.7.1-5 libblacs-mpi-dev_1.1-30.1 libblacs-mpi1_1.1-30.1 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbtf1.1.0_1:3.4.0-2 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcairo2_1.10.2-6.1 libcamd2.2.0_1:3.4.0-2 libccolamd2.7.1_1:3.4.0-2 libcholmod1.7.1_1:3.4.0-2 libcolamd2.7.1_1:3.4.0-2 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libcsparse2.2.3_1:3.4.0-2 libcurl3-gnutls_7.21.7-2 libcxsparse2.2.3_1:3.4.0-2 libdatrie1_0.2.4-3 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdbus-1-3_1.4.14-1 libdirac-encoder0_1.0.2-4 libdpkg-perl_1.16.0.3 libdrm2_2.4.26-1 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libffi5_3.0.10~rc10-3 libfontconfig1_2.8.0-3 libfontconfig1-dev_2.8.0-3 libfreetype6_2.4.6-2 libfreetype6-dev_2.4.6-2 libftgl-dev_2.1.3~rc5-3 libftgl2_2.1.3~rc5-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-10 libgl1-mesa-dev_7.11-5 libgl1-mesa-glx_7.11-5 libgl2ps-dev_1.3.6-1 libgl2ps0_1.3.6-1 libglapi-mesa_7.11-5 libglib2.0-0_2.28.6-1 libglu1-mesa_7.11-5 libglu1-mesa-dev_7.11-5 libgmp10_2:5.0.2+dfsg-1 libgnutls26_2.12.10-1 libgomp1_4.6.1-10 libgpg-error0_1.10-1 libgsm1_1.0.13-3 libgssapi-krb5-2_1.9.1+dfsg-2 libgssrpc4_1.9.1+dfsg-2 libhdf5-serial-1.8.4_1.8.4-patch1-3 libhypre-2.4.0_2.4.0b-7 libhypre-dev_2.4.0b-7 libibverbs-dev_1.1.5-1 libibverbs1_1.1.5-1 libice-dev_2:1.0.7-2 libice6_2:1.0.7-2 libidn11_1.22-3 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libjs-jquery_1.6.2-1 libk5crypto3_1.9.1+dfsg-2 libkadm5clnt-mit8_1.9.1+dfsg-2 libkadm5srv-mit8_1.9.1+dfsg-2 libkdb5-5_1.9.1+dfsg-2 libkeyutils1_1.5.2-2 libklu1.1.0_1:3.4.0-2 libkrb5-3_1.9.1+dfsg-2 libkrb5-dev_1.9.1+dfsg-2 libkrb5support0_1.9.1+dfsg-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblcms1_1.19.dfsg-1 libldap-2.4-2_2.4.25-3 libldl2.0.1_1:3.4.0-2 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmng1_1.0.10-2 libmount1_2.19.1-5 libmp3lame0_3.98.4+repack2-6 libmpc2_0.9-3 libmpfr4_3.0.1-6 libmumps-4.9.2_4.9.2.dfsg-7 libmumps-dev_4.9.2.dfsg-7 libmumps-scotch-4.9.2_4.9.2.dfsg-7 libmumps-scotch-dev_4.9.2.dfsg-7 libmysqlclient-dev_5.1.58-1 libmysqlclient16_5.1.58-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libnetcdf-dev_1:4.1.1-5 libnetcdf6_1:4.1.1-5 libnuma1_2.0.5-1 libogg0_1.2.2~dfsg-1 libopencascade-foundation-6.5.0_6.5.0.dfsg-2 libopencascade-foundation-dev_6.5.0.dfsg-2 libopencascade-modeling-6.5.0_6.5.0.dfsg-2 libopencascade-modeling-dev_6.5.0.dfsg-2 libopenjpeg2_1.3+dfsg-4 libopenmpi-dev_1.4.3-2.1 libopenmpi1.3_1.4.3-2.1 liborc-0.4-0_1:0.4.14-1 libp11-kit0_0.4-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-3 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libpq-dev_9.1~rc1-3 libpq5_9.1~rc1-3 libpthread-stubs0_0.3-2.1 libpthread-stubs0-dev_0.3-2.1 libpython2.6_2.6.7-4 libqt4-dbus_4:4.7.3-8 libqt4-declarative_4:4.7.3-8 libqt4-designer_4:4.7.3-8 libqt4-dev_4:4.7.3-8 libqt4-help_4:4.7.3-8 libqt4-network_4:4.7.3-8 libqt4-opengl_4:4.7.3-8 libqt4-opengl-dev_4:4.7.3-8 libqt4-qt3support_4:4.7.3-8 libqt4-script_4:4.7.3-8 libqt4-scripttools_4:4.7.3-8 libqt4-sql_4:4.7.3-8 libqt4-svg_4:4.7.3-8 libqt4-test_4:4.7.3-8 libqt4-xml_4:4.7.3-8 libqt4-xmlpatterns_4:4.7.3-8 libqtcore4_4:4.7.3-8 libqtgui4_4:4.7.3-8 libquadmath0_4.6.1-10 libqwt5-qt4_5.2.2-1 libqwt5-qt4-dev_5.2.2-1 libreadline-dev_6.2-4 libreadline6_6.2-4 libreadline6-dev_6.2-4 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libscalapack-mpi-dev_1.8.0-6+b1 libscalapack-mpi1_1.8.0-6+b1 libschroedinger-1.0-0_1.0.10-2.1 libscotch-5.1_5.1.11.dfsg-7 libscotch-dev_5.1.11.dfsg-7 libscotchmetis-dev_5.1.11.dfsg-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm-dev_2:1.2.0-2 libsm6_2:1.2.0-2 libspeex1_1.2~rc1-1 libsqlite3-0_3.7.7-2 libss2_1.42~WIP-2011-07-02-1 libssl-dev_1.0.0e-2 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libsuitesparse-dev_1:3.4.0-2 libsuperlu3_3.0+20070106-3 libsuperlu3-dev_3.0+20070106-3 libswscale-dev_4:0.7.1-5 libswscale2_4:0.7.1-5 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtheora0_1.1.1+dfsg.1-3 libtiff4_3.9.5-1 libtiff4-dev_3.9.5-1 libtiffxx0c2_3.9.5-1 libtimedate-perl_1.2000-1 libtorque2_2.4.16+dfsg-1 libumfpack5.4.0_1:3.4.0-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libva1_1.0.12-2 libvorbis0a_1.3.2-1 libvorbisenc2_1.3.2-1 libvpx0_0.9.7.p1-1 libvtk5-dev_5.6.1-6.1 libvtk5-qt4-dev_5.6.1-6.1 libvtk5.6_5.6.1-6.1 libvtk5.6-qt4_5.6.1-6.1 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libx11-dev_2:1.4.4-1 libx264-116_2:0.116.2042+git178455c-1+b1 libxau-dev_1:1.0.6-3 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcb1-dev_1.7-3 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.0-3 libxdmcp6_1:1.1.0-3 libxext-dev_2:1.3.0-3 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft-dev_2.2.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxml2-dev_2.7.8.dfsg-4 libxrender-dev_1:0.9.6-2 libxrender1_1:0.9.6-2 libxss-dev_1:1.2.1-2 libxss1_1:1.2.1-2 libxt-dev_1:1.1.1-2 libxt6_1:1.1.1-2 libxvidcore4_2:1.3.2-5 libxxf86vm1_1:1.1.1-2 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 m4_1.4.16-2 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mesa-common-dev_7.11-5 mime-support_3.51-1 mount_2.19.1-5 mpi-default-bin_0.6 mpi-default-dev_0.6 multiarch-support_2.13-20 mysql-common_5.1.58-1 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 openmpi-bin_1.4.3-2.1 openmpi-common_1.4.3-2.1 openssl_1.0.0e-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 python_2.6.7-3 python-dev_2.6.7-3 python-minimal_2.6.7-3 python-qt4-dev_4.8.3-4 python-sip_4.12.4-1 python-sip-dev_4.12.4-1 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 qt4-linguist-tools_4:4.7.3-8 qt4-qmake_4:4.7.3-8 quilt_0.48-7 r-base-core_2.13.1-1 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-elmerfem-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.4_8.4.19-4 tcl8.4-dev_8.4.19-4 tcl8.5_8.5.10-1 tcl8.5-dev_8.5.10-1 tk8.4_8.4.19-4 tk8.4-dev_8.4.19-4 tk8.5_8.5.10-1 tk8.5-dev_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011i-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+8 x11proto-core-dev_7.0.22-1 x11proto-input-dev_2.0.2-2 x11proto-kb-dev_1.0.5-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.1-1 x11proto-xext-dev_7.2.0-3 xdg-utils_1.1.0~rc1-2 xorg-sgml-doctools_1:1.8-2 xtrans-dev_1.2.6-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Jul 29 18:16:41 2011 CEST using DSA key ID 564EE4B6 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./elmerfem_6.1.0.svn.5272.dfsg-1.dsc dpkg-source: info: extracting elmerfem in elmerfem-6.1.0.svn.5272.dfsg dpkg-source: info: unpacking elmerfem_6.1.0.svn.5272.dfsg.orig.tar.bz2 dpkg-source: info: unpacking elmerfem_6.1.0.svn.5272.dfsg-1.debian.tar.gz dpkg-source: info: applying banish-rpath.patch dpkg-source: info: applying no-metis-partmesh.patch dpkg-source: info: applying ElmerGUI-config.patch dpkg-source: info: applying node-partition.patch dpkg-source: info: applying no-avcore.patch dpkg-source: info: applying lib-link-order.patch dpkg-source: info: applying ElmerGUI-no-strip.patch dpkg-source: info: applying elmer-revision.patch Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package elmerfem dpkg-buildpackage: source version 6.1.0.svn.5272.dfsg-1 dpkg-source --before-build elmerfem-6.1.0.svn.5272.dfsg dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh_testdir for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ if [ -e $elmermodule/Makefile ]; then \ echo; echo CLEANING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule maintainer-clean; \ fi; \ done if [ -e ElmerGUI/Makefile ]; then \ make -C ElmerGUI distclean; \ fi if [ -e ElmerGUIlogger/Makefile ]; then \ make -C ElmerGUIlogger distclean; \ fi if [ -e utils/ElmerClips/Makefile ]; then \ make -C utils/ElmerClips distclean; \ fi for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do rm -f $missingfile; done for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in ElmerGUIlogger/ElmerGUIlogger.pro; do \ if [ -e $backupfile.bak ]; then \ mv -f $backupfile.bak $backupfile; \ fi; \ done rm -rf elmergrid/src/metis post/src/fonts/TrueType rm -rf ElmerGUI/PythonQt/lib ElmerGUI/matc/lib ElmerGUI/netgen/ngcore rm -f stamp-* if [ -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt pop -a && rm -rf .pc; \ fi Removing patch elmer-revision.patch Restoring fem/acx_elmer.m4 Removing patch ElmerGUI-no-strip.patch Restoring ElmerGUI/Application/Application.pro Removing patch lib-link-order.patch Restoring ElmerGUI/Application/Application.pro Removing patch no-avcore.patch Restoring utils/ElmerClips/ElmerClips.pro Removing patch node-partition.patch Restoring ElmerGUI/Application/src/parallel.cpp Removing patch ElmerGUI-config.patch Restoring ElmerGUI/ElmerGUI.pri Removing patch no-metis-partmesh.patch Restoring elmergrid/src/femelmer.c Removing patch banish-rpath.patch Restoring fem/src/Makefile.am No patches applied dh_clean dpkg-source -b elmerfem-6.1.0.svn.5272.dfsg dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: warning: patches have not been applied, applying them now (use --no-preparation to override) dpkg-source: info: applying banish-rpath.patch dpkg-source: info: applying no-metis-partmesh.patch dpkg-source: info: applying ElmerGUI-config.patch dpkg-source: info: applying node-partition.patch dpkg-source: info: applying no-avcore.patch dpkg-source: info: applying lib-link-order.patch dpkg-source: info: applying ElmerGUI-no-strip.patch dpkg-source: info: applying elmer-revision.patch dpkg-source: info: building elmerfem using existing ./elmerfem_6.1.0.svn.5272.dfsg.orig.tar.bz2 dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5272.dfsg-1.debian.tar.gz dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5272.dfsg-1.dsc debian/rules build if [ ! -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt push -a; \ fi dh_testdir for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in ElmerGUIlogger/ElmerGUIlogger.pro; do \ cp -a $backupfile $backupfile.bak; \ done mkdir elmergrid/src/metis install -d post/src/fonts/TrueType for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do touch $missingfile; done for aclocaldir in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo Running aclocal/automake in module $aclocaldir; \ (cd $aclocaldir && aclocal && automake); \ done Running aclocal/automake in module eio configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level Running aclocal/automake in module matc Running aclocal/automake in module elmerparam configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level Running aclocal/automake in module hutiter configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level Running aclocal/automake in module meshgen2d Running aclocal/automake in module fem configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level Running aclocal/automake in module front src/Makefile.am:76: `%'-style pattern rules are a GNU make extension Running aclocal/automake in module elmergrid Running aclocal/automake in module post configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level src/Makefile.am:48: `%'-style pattern rules are a GNU make extension set -e; for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo; echo CONFIGURING ELMER MODULE $elmermodule; echo; \ (cd $elmermodule && \ autoconf && \ LIBS="-L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" \ CPPFLAGS=" -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2" \ FCPPFLAGS=" -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" \ CFLAGS="-g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC" \ CXXFLAGS="-g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC" \ FCFLAGS=" -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC" \ ./configure --prefix=/usr --with-metis=/usr \ --with-mpi-dir=/usr --with-mpi-inc-dir=/usr/include/mpi \ --with-blas=-lblas --with-lapack=-llapack \ --with-mumps=dmumps_scotch); \ echo; echo BUILDING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule; \ echo; echo INSTALLING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule install DESTDIR=/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp; \ done CONFIGURING ELMER MODULE eio configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for dummy main to link with Fortran libraries... (cached) none checking whether we are using the Microsoft C compiler... no checking for Fortran char* mangling scheme... char_ptr checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for ANSI C header files... (cached) yes checking whether we are using the Microsoft C compiler... (cached) no configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE eio make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make all-recursive make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' Making all in include make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/include' Making all in src make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOConstraintAgent.o -MD -MP -MF .deps/EIOConstraintAgent.Tpo -c -o EIOConstraintAgent.o EIOConstraintAgent.cpp EIOConstraintAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "constraints.header", ^ EIOConstraintAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "constraints.table" ^ 2 warnings generated. mv -f .deps/EIOConstraintAgent.Tpo .deps/EIOConstraintAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIODualMeshAgent.o -MD -MP -MF .deps/EIODualMeshAgent.Tpo -c -o EIODualMeshAgent.o EIODualMeshAgent.cpp EIODualMeshAgent.cpp:31:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.header", ^ EIODualMeshAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/dual.elements" ^ 2 warnings generated. mv -f .deps/EIODualMeshAgent.Tpo .deps/EIODualMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOGeometryAgent.o -MD -MP -MF .deps/EIOGeometryAgent.Tpo -c -o EIOGeometryAgent.o EIOGeometryAgent.cpp EIOGeometryAgent.cpp:30:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.header", ^ EIOGeometryAgent.cpp:31:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.nodes", ^ EIOGeometryAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.elements", ^ EIOGeometryAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.bodies", ^ EIOGeometryAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.loops", ^ EIOGeometryAgent.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.boundaries" ^ 6 warnings generated. mv -f .deps/EIOGeometryAgent.Tpo .deps/EIOGeometryAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOMeshAgent.o -MD -MP -MF .deps/EIOMeshAgent.Tpo -c -o EIOMeshAgent.o EIOMeshAgent.cpp EIOMeshAgent.cpp:73:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.header", ^ EIOMeshAgent.cpp:74:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.nodes", ^ EIOMeshAgent.cpp:75:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.elements", ^ EIOMeshAgent.cpp:76:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.boundary" ^ EIOMeshAgent.cpp:79:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.header", ^ EIOMeshAgent.cpp:80:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.nodes", ^ EIOMeshAgent.cpp:81:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.elements", ^ EIOMeshAgent.cpp:82:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.boundary", //"%s/%s.part.%d.boundary", ^ EIOMeshAgent.cpp:83:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.shared" ^ 9 warnings generated. mv -f .deps/EIOMeshAgent.Tpo .deps/EIOMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelDataAgent.o -MD -MP -MF .deps/EIOModelDataAgent.Tpo -c -o EIOModelDataAgent.o EIOModelDataAgent.cpp EIOModelDataAgent.cpp:101:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.header", ^ EIOModelDataAgent.cpp:102:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.coordinates", ^ EIOModelDataAgent.cpp:103:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.mesh_parameters", ^ EIOModelDataAgent.cpp:104:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.materials", ^ EIOModelDataAgent.cpp:105:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.boundary_conditions", ^ EIOModelDataAgent.cpp:106:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.initial_conditions", ^ EIOModelDataAgent.cpp:107:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.body_equations", ^ EIOModelDataAgent.cpp:108:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.body_forces", ^ EIOModelDataAgent.cpp:109:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.constants", ^ EIOModelDataAgent.cpp:110:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.bodies" ^ 10 warnings generated. mv -f .deps/EIOModelDataAgent.Tpo .deps/EIOModelDataAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelManager.o -MD -MP -MF .deps/EIOModelManager.Tpo -c -o EIOModelManager.o EIOModelManager.cpp mv -f .deps/EIOModelManager.Tpo .deps/EIOModelManager.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOPartWriter.o -MD -MP -MF .deps/EIOPartWriter.Tpo -c -o EIOPartWriter.o EIOPartWriter.cpp EIOPartWriter.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.header", ^ EIOPartWriter.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.nodes", ^ EIOPartWriter.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.shared", ^ EIOPartWriter.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.elements", ^ EIOPartWriter.cpp:36:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.border" ^ 5 warnings generated. mv -f .deps/EIOPartWriter.Tpo .deps/EIOPartWriter.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOSolverAgent.o -MD -MP -MF .deps/EIOSolverAgent.Tpo -c -o EIOSolverAgent.o EIOSolverAgent.cpp EIOSolverAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "solver.header", ^ EIOSolverAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "solver.records", ^ EIOSolverAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "timestep.header", ^ EIOSolverAgent.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "timestep.records" ^ 4 warnings generated. mv -f .deps/EIOSolverAgent.Tpo .deps/EIOSolverAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_c.o -MD -MP -MF .deps/eio_api_c.Tpo -c -o eio_api_c.o eio_api_c.cpp eio_api_c.cpp:59:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:59:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_c.cpp:59:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_c.cpp:76:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:76:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_c.cpp:76:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_c.cpp:114:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:114:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_c.cpp:114:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_c.cpp:127:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:127:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_c.cpp:127:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_c.cpp:268:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(meshAgent = new EIOMeshAgent(modelManager)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:268:16: note: use '==' to turn this assignment into an equality comparison if(meshAgent = new EIOMeshAgent(modelManager)) ^ == eio_api_c.cpp:268:16: note: place parentheses around the assignment to silence this warning if(meshAgent = new EIOMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:403:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:403:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_c.cpp:403:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:416:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:416:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_c.cpp:416:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:454:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:454:25: note: use '==' to turn this assignment into an equality comparison if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ == eio_api_c.cpp:454:25: note: place parentheses around the assignment to silence this warning if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ ( ) eio_api_c.cpp:575:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:575:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_c.cpp:575:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_c.cpp:588:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:588:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_c.cpp:588:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_c.cpp:942:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:942:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_c.cpp:942:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_c.cpp:955:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:955:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_c.cpp:955:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) 12 warnings generated. mv -f .deps/eio_api_c.Tpo .deps/eio_api_c.Po rm -f libeioc.a ar cru libeioc.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_c.o ranlib libeioc.a g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_f.o -MD -MP -MF .deps/eio_api_f.Tpo -c -o eio_api_f.o eio_api_f.cpp eio_api_f.cpp:60:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:60:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_f.cpp:60:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_f.cpp:77:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:77:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_f.cpp:77:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_f.cpp:115:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:115:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_f.cpp:115:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_f.cpp:128:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:128:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_f.cpp:128:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_f.cpp:269:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(meshAgent = new EIOMeshAgent(modelManager)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:269:16: note: use '==' to turn this assignment into an equality comparison if(meshAgent = new EIOMeshAgent(modelManager)) ^ == eio_api_f.cpp:269:16: note: place parentheses around the assignment to silence this warning if(meshAgent = new EIOMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:402:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:402:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_f.cpp:402:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:415:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:415:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_f.cpp:415:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:453:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:453:25: note: use '==' to turn this assignment into an equality comparison if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ == eio_api_f.cpp:453:25: note: place parentheses around the assignment to silence this warning if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ ( ) eio_api_f.cpp:574:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:574:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_f.cpp:574:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_f.cpp:587:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:587:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_f.cpp:587:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_f.cpp:941:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:941:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_f.cpp:941:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_f.cpp:954:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:954:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_f.cpp:954:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) 12 warnings generated. mv -f .deps/eio_api_f.Tpo .deps/eio_api_f.Po rm -f libeiof.a ar cru libeiof.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_f.o ranlib libeiof.a make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' INSTALLING ELMER MODULE eio make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' Making install in include make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /usr/bin/install -c -m 644 eio_api.h '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/include' Making install in src make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/src' test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libeioc.a libeiof.a '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libeioc.a ) ( cd '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libeiof.a ) make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/eio' CONFIGURING ELMER MODULE matc configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for ranlib... ranlib checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking for main in -lm... yes checking for main in -lcurses... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for tputs in -lncurses... yes checking for rl_set_keyboard_input_timeout in -lreadline... yes checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE matc make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make all-recursive make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' Making all in src make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT c3d.o -MD -MP -MF .deps/c3d.Tpo -c -o c3d.o c3d.c mv -f .deps/c3d.Tpo .deps/c3d.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT clip.o -MD -MP -MF .deps/clip.Tpo -c -o clip.o clip.c mv -f .deps/clip.Tpo .deps/clip.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT dri_ps.o -MD -MP -MF .deps/dri_ps.Tpo -c -o dri_ps.o dri_ps.c mv -f .deps/dri_ps.Tpo .deps/dri_ps.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eig.o -MD -MP -MF .deps/eig.Tpo -c -o eig.o eig.c mv -f .deps/eig.Tpo .deps/eig.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT error.o -MD -MP -MF .deps/error.Tpo -c -o error.o error.c mv -f .deps/error.Tpo .deps/error.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.c eval.c:488:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fnc = fnc_check(name)) fnc_free_entry(fnc); ~~~~^~~~~~~~~~~~~~~~~ eval.c:488:17: note: use '==' to turn this assignment into an equality comparison if (fnc = fnc_check(name)) fnc_free_entry(fnc); ^ == eval.c:488:17: note: place parentheses around the assignment to silence this warning if (fnc = fnc_check(name)) fnc_free_entry(fnc); ^ ( ) eval.c:440:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(root->data) ^ 2 warnings generated. mv -f .deps/eval.Tpo .deps/eval.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT files.o -MD -MP -MF .deps/files.Tpo -c -o files.o files.c mv -f .deps/files.Tpo .deps/files.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT funcs.o -MD -MP -MF .deps/funcs.Tpo -c -o funcs.o funcs.c mv -f .deps/funcs.Tpo .deps/funcs.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra.o -MD -MP -MF .deps/gra.Tpo -c -o gra.o gra.c mv -f .deps/gra.Tpo .deps/gra.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra_com.o -MD -MP -MF .deps/gra_com.Tpo -c -o gra_com.o gra_com.c mv -f .deps/gra_com.Tpo .deps/gra_com.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT jacobi.o -MD -MP -MF .deps/jacobi.Tpo -c -o jacobi.o jacobi.c mv -f .deps/jacobi.Tpo .deps/jacobi.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lists.o -MD -MP -MF .deps/lists.Tpo -c -o lists.o lists.c mv -f .deps/lists.Tpo .deps/lists.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lu.o -MD -MP -MF .deps/lu.Tpo -c -o lu.o lu.c mv -f .deps/lu.Tpo .deps/lu.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matc.o -MD -MP -MF .deps/matc.Tpo -c -o matc.o matc.c matc.c:406:8: warning: implicit declaration of function 'isatty' is invalid in C99 [-Wimplicit-function-declaration] if (isatty(fileno(math_in)) && isatty(fileno(math_out))) ^ 1 warning generated. mv -f .deps/matc.Tpo .deps/matc.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matrix.o -MD -MP -MF .deps/matrix.Tpo -c -o matrix.o matrix.c matrix.c:189:25: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration] if (seed == 0) seed = time(NULL); ^ 1 warning generated. mv -f .deps/matrix.Tpo .deps/matrix.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT oper.o -MD -MP -MF .deps/oper.Tpo -c -o oper.o oper.c mv -f .deps/oper.Tpo .deps/oper.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT optim.o -MD -MP -MF .deps/optim.Tpo -c -o optim.o optim.c optim.c:146:26: warning: use of logical && with constant operand; switch to bitwise & or remove constant [-Wconstant-logical-operand] if (com -> flags && CMDFLAG_CE) ^ ~~~~~~~~~~ optim.c:537:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(cptr->data) ^ 2 warnings generated. mv -f .deps/optim.Tpo .deps/optim.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o parser.c parser.c:299:12: warning: 40 enumeration values not handled in switch: 'nullsym', 'rightpar', 'indopen'... [-Wswitch-enum] switch(symbol) ^ parser.c:446:10: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:502:12: warning: 41 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:526:12: warning: 41 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:545:12: warning: 40 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:575:12: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:590:12: warning: 37 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:624:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:655:12: warning: 35 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:697:12: warning: 29 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:738:12: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:752:12: warning: 28 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:801:12: warning: 26 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:854:12: warning: 25 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ 14 warnings generated. mv -f .deps/parser.Tpo .deps/parser.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT str.o -MD -MP -MF .deps/str.Tpo -c -o str.o str.c str.c:85:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security] sprintf(str_pstr, fmt); ^~~ 1 warning generated. mv -f .deps/str.Tpo .deps/str.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT urand.o -MD -MP -MF .deps/urand.Tpo -c -o urand.o urand.c mv -f .deps/urand.Tpo .deps/urand.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT variable.o -MD -MP -MF .deps/variable.Tpo -c -o variable.o variable.c mv -f .deps/variable.Tpo .deps/variable.Po rm -f libmatc.a ar cru libmatc.a c3d.o clip.o dri_ps.o eig.o error.o eval.o files.o funcs.o gra.o gra_com.o jacobi.o lists.o lu.o matc.o matrix.o oper.o optim.o parser.o str.o urand.o variable.o ranlib libmatc.a gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c main.c:22:9: warning: implicit declaration of function 'mtc_init' is invalid in C99 [-Wimplicit-function-declaration] (void)mtc_init( stdin, stdout, stderr ); ^ main.c:23:17: warning: implicit declaration of function 'mtc_domath' is invalid in C99 [-Wimplicit-function-declaration] str = (char *)mtc_domath( "source(\"mc.ini\")" ); ^ main.c:52:7: warning: implicit declaration of function 'free' is invalid in C99 [-Wimplicit-function-declaration] free(str); ^ 3 warnings generated. mv -f .deps/main.Tpo .deps/main.Po gcc -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -o matc main.o libmatc.a -lreadline -lncurses -lcurses -lm -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' INSTALLING ELMER MODULE matc make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' Making install in src make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc/src' test -z "/usr/bin" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin" /usr/bin/install -c matc '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin' test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libmatc.a '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libmatc.a ) test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /bin/mkdir -p '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include/elmer' /usr/bin/install -c -m 644 elmer/matc.h elmer/fnames.h elmer/gra.h '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include/elmer' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/matc' CONFIGURING ELMER MODULE elmerparam configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for ranlib... ranlib checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for xlf90... no checking for pathf90... no checking for ifort... no checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for option needed by f95 to find non-local *.mod-files... -I checking for *.mod-file naming convention... modulename.mod checking for iargc() declaration needed in Fortran code... !none iargc_decl = !none ./configure: line 4368: ACX_CHECK_B64FLAGS: command not found checking for R... yes checking for matlab... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/iargc_decl.inc config.status: creating src/R/elmerparam/src/Makevars config.status: creating src/R/Makefile config.status: creating src/matlab/Makefile config.status: creating test/Makefile config.status: creating test/make.inc config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE elmerparam make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/missing --run autoheader) configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h make all-recursive make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' Making all in src make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making all in . make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -MT elmerparam.o -MD -MP -MF .deps/elmerparam.Tpo -c -o elmerparam.o elmerparam.c mv -f .deps/elmerparam.Tpo .deps/elmerparam.Po cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -MT modelline.o -MD -MP -MF .deps/modelline.Tpo -c -o modelline.o modelline.c mv -f .deps/modelline.Tpo .deps/modelline.Po cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -MT dynarray.o -MD -MP -MF .deps/dynarray.Tpo -c -o dynarray.o dynarray.c mv -f .deps/dynarray.Tpo .deps/dynarray.Po rm -f libelmerparam.a ar cru libelmerparam.a elmerparam.o modelline.o dynarray.o ranlib libelmerparam.a f95 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -c -o elmerparamf.o elmerparamf.f90 rm -f libelmerparamf.a ar cru libelmerparamf.a elmerparamf.o ranlib libelmerparamf.a f95 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -c -o ElmerParam.o ElmerParam.f90 f95 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -o ElmerParam ElmerParam.o libelmerparamf.a libelmerparam.a -L/usr/lib -lmatc -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making all in R make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making all in test make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' INSTALLING ELMER MODULE elmerparam make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' Making install in src make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making install in . make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' test -z "/usr/bin" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin" /usr/bin/install -c ElmerParam '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin' /usr/bin/install -c elmerparam.mod /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libelmerparam.a libelmerparamf.a '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libelmerparam.a ) ( cd '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libelmerparamf.a ) test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /usr/bin/install -c -m 644 elmerparam.h '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include' make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making install in R make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' R CMD build elmerparam * checking for file 'elmerparam/DESCRIPTION' ... OK * preparing 'elmerparam': * checking DESCRIPTION meta-information ... OK * cleaning src Warning: /tmp/RtmpZie893/Rbuildbb8c509/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'elmerparam_1.0.tar.gz' test -z "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R" || mkdir -p /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R R CMD INSTALL -l /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R elmerparam * installing *source* package 'elmerparam' ... ** libs make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/src' gcc -I/usr/share/R/include -I/usr/include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fpic -std=gnu99 -O3 -pipe -g -c elmerparam_rwrapper.c -o elmerparam_rwrapper.o elmerparam_rwrapper.c:55:8: warning: assigning to 'char *' from 'const char *' discards qualifiers tagp = CHAR(tag); ^ ~~~~~~~~~ 1 warning generated. gcc -shared -o elmerparam.so elmerparam_rwrapper.o -L/usr/lib -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -lelmerparam -lmatc -L/usr/lib/R/lib -lR make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/src' installing to /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R/elmerparam/libs ** R ** preparing package for lazy loading ** help Warning: /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/man/elmer-package.Rd:33: All text must be in a section Warning: /build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (elmerparam) make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making install in test make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' CONFIGURING ELMER MODULE hutiter configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for default compilation flags... optimized checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether we are using the Microsoft C compiler... no checking for e_wsfe in -lg2c... no checking for saxpy_ in -lblas... checking for in ... yes configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating examples/Makefile config.status: creating examples/ex1/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps BUILDING ELMER MODULE hutiter make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make all-recursive make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' Making all in src make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_C.o huti_aux_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_D.o huti_aux_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_S.o huti_aux_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_Z.o huti_aux_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_C.o huti_bicgstab_2_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_D.o huti_bicgstab_2_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_S.o huti_bicgstab_2_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_Z.o huti_bicgstab_2_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_C.o huti_bicgstab_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_D.o huti_bicgstab_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_S.o huti_bicgstab_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_Z.o huti_bicgstab_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_C.o huti_cg_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_D.o huti_cg_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_C.o huti_cgs_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_D.o huti_cgs_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_S.o huti_cg_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_S.o huti_cgs_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_Z.o huti_cgs_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_Z.o huti_cg_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_C.o huti_gmres_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_D.o huti_gmres_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_S.o huti_gmres_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_Z.o huti_gmres_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_C.o huti_qmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_D.o huti_qmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_S.o huti_qmr_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_Z.o huti_qmr_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_C.o huti_tfqmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_D.o huti_tfqmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_S.o huti_tfqmr_S.F90 cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_main.o -MD -MP -MF .deps/huti_main.Tpo -c -o huti_main.o huti_main.c mv -f .deps/huti_main.Tpo .deps/huti_main.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_C.o -MD -MP -MF .deps/huti_sfe_c_C.Tpo -c -o huti_sfe_c_C.o huti_sfe_c_C.c huti_sfe_c_C.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_C.Tpo .deps/huti_sfe_c_C.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_D.o -MD -MP -MF .deps/huti_sfe_c_D.Tpo -c -o huti_sfe_c_D.o huti_sfe_c_D.c huti_sfe_c_D.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_D.Tpo .deps/huti_sfe_c_D.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_S.o -MD -MP -MF .deps/huti_sfe_c_S.Tpo -c -o huti_sfe_c_S.o huti_sfe_c_S.c huti_sfe_c_S.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_S.Tpo .deps/huti_sfe_c_S.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_Z.o -MD -MP -MF .deps/huti_sfe_c_Z.Tpo -c -o huti_sfe_c_Z.o huti_sfe_c_Z.c huti_sfe_c_Z.c:125:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_Z.Tpo .deps/huti_sfe_c_Z.Po gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_Z.o huti_tfqmr_Z.F90 rm -f libhuti.a ar cru libhuti.a huti_aux_C.o huti_aux_D.o huti_aux_S.o huti_aux_Z.o huti_bicgstab_2_C.o huti_bicgstab_2_D.o huti_bicgstab_2_S.o huti_bicgstab_2_Z.o huti_bicgstab_C.o huti_bicgstab_D.o huti_bicgstab_S.o huti_bicgstab_Z.o huti_cg_C.o huti_cg_D.o huti_cgs_C.o huti_cgs_D.o huti_cg_S.o huti_cgs_S.o huti_cgs_Z.o huti_cg_Z.o huti_gmres_C.o huti_gmres_D.o huti_gmres_S.o huti_gmres_Z.o huti_qmr_C.o huti_qmr_D.o huti_qmr_S.o huti_qmr_Z.o huti_tfqmr_C.o huti_tfqmr_D.o huti_tfqmr_S.o huti_main.o huti_sfe_c_C.o huti_sfe_c_D.o huti_sfe_c_S.o huti_sfe_c_Z.o huti_tfqmr_Z.o ranlib libhuti.a make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' Making all in include make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' Making all in examples make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' Making all in ex1 make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' INSTALLING ELMER MODULE hutiter make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' Making install in src make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libhuti.a '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libhuti.a ) make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' Making install in include make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /usr/bin/install -c -m 644 huti_defs.h huti_fdefs.h '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' Making install in examples make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' Making install in ex1 make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/hutiter' CONFIGURING ELMER MODULE meshgen2d configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for default compilation flags... optimized checking for answer to meaning of life... 42 checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for main in -lstdc++... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether to enable maintainer-specific portions of Makefiles... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE meshgen2d make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make all-recursive make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' Making all in src make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' Making all in include make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGGridMesh.o -MD -MP -MF .deps/BGGridMesh.Tpo -c -o BGGridMesh.o BGGridMesh.cpp mv -f .deps/BGGridMesh.Tpo .deps/BGGridMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGTriangleMesh.o -MD -MP -MF .deps/BGTriangleMesh.Tpo -c -o BGTriangleMesh.o BGTriangleMesh.cpp mv -f .deps/BGTriangleMesh.Tpo .deps/BGTriangleMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGVertex.o -MD -MP -MF .deps/BGVertex.Tpo -c -o BGVertex.o BGVertex.cpp mv -f .deps/BGVertex.Tpo .deps/BGVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Body.o -MD -MP -MF .deps/Body.Tpo -c -o Body.o Body.cpp mv -f .deps/Body.Tpo .deps/Body.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryElement.o -MD -MP -MF .deps/BoundaryElement.Tpo -c -o BoundaryElement.o BoundaryElement.cpp mv -f .deps/BoundaryElement.Tpo .deps/BoundaryElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryLayer.o -MD -MP -MF .deps/BoundaryLayer.Tpo -c -o BoundaryLayer.o BoundaryLayer.cpp mv -f .deps/BoundaryLayer.Tpo .deps/BoundaryLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Connect.o -MD -MP -MF .deps/Connect.Tpo -c -o Connect.o Connect.cpp mv -f .deps/Connect.Tpo .deps/Connect.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Element.o -MD -MP -MF .deps/Element.Tpo -c -o Element.o Element.cpp mv -f .deps/Element.Tpo .deps/Element.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT GeometryEdge.o -MD -MP -MF .deps/GeometryEdge.Tpo -c -o GeometryEdge.o GeometryEdge.cpp mv -f .deps/GeometryEdge.Tpo .deps/GeometryEdge.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp mv -f .deps/main.Tpo .deps/main.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Mesh.o -MD -MP -MF .deps/Mesh.Tpo -c -o Mesh.o Mesh.cpp mv -f .deps/Mesh.Tpo .deps/Mesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshNode.o -MD -MP -MF .deps/MeshNode.Tpo -c -o MeshNode.o MeshNode.cpp mv -f .deps/MeshNode.Tpo .deps/MeshNode.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshParser.o -MD -MP -MF .deps/MeshParser.Tpo -c -o MeshParser.o MeshParser.cpp MeshParser.cpp:367:39: warning: '&&' within '||' [-Wlogical-op-parentheses] if( !readInteger( loop->direction ) || ^ MeshParser.cpp:367:39: note: place parentheses around the '&&' expression to silence this warning if( !readInteger( loop->direction ) || ^ 1 warning generated. mv -f .deps/MeshParser.Tpo .deps/MeshParser.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o Node.cpp mv -f .deps/Node.Tpo .deps/Node.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT PQ.o -MD -MP -MF .deps/PQ.Tpo -c -o PQ.o PQ.cpp mv -f .deps/PQ.Tpo .deps/PQ.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadElement.o -MD -MP -MF .deps/QuadElement.Tpo -c -o QuadElement.o QuadElement.cpp mv -f .deps/QuadElement.Tpo .deps/QuadElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadLayer.o -MD -MP -MF .deps/QuadLayer.Tpo -c -o QuadLayer.o QuadLayer.cpp mv -f .deps/QuadLayer.Tpo .deps/QuadLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSMFVoronoiSegment.o -MD -MP -MF .deps/SSMFVoronoiSegment.Tpo -c -o SSMFVoronoiSegment.o SSMFVoronoiSegment.cpp mv -f .deps/SSMFVoronoiSegment.Tpo .deps/SSMFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSSFVoronoiSegment.o -MD -MP -MF .deps/SSSFVoronoiSegment.Tpo -c -o SSSFVoronoiSegment.o SSSFVoronoiSegment.cpp mv -f .deps/SSSFVoronoiSegment.Tpo .deps/SSSFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleElement.o -MD -MP -MF .deps/TriangleElement.Tpo -c -o TriangleElement.o TriangleElement.cpp mv -f .deps/TriangleElement.Tpo .deps/TriangleElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleNELayer.o -MD -MP -MF .deps/TriangleNELayer.Tpo -c -o TriangleNELayer.o TriangleNELayer.cpp mv -f .deps/TriangleNELayer.Tpo .deps/TriangleNELayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Vertex.o -MD -MP -MF .deps/Vertex.Tpo -c -o Vertex.o Vertex.cpp mv -f .deps/Vertex.Tpo .deps/Vertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiSegment.o -MD -MP -MF .deps/VoronoiSegment.Tpo -c -o VoronoiSegment.o VoronoiSegment.cpp mv -f .deps/VoronoiSegment.Tpo .deps/VoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiVertex.o -MD -MP -MF .deps/VoronoiVertex.Tpo -c -o VoronoiVertex.o VoronoiVertex.cpp mv -f .deps/VoronoiVertex.Tpo .deps/VoronoiVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VSVertex.o -MD -MP -MF .deps/VSVertex.Tpo -c -o VSVertex.o VSVertex.cpp mv -f .deps/VSVertex.Tpo .deps/VSVertex.Po g++ -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o ElmerMesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib g++ -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o Mesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' INSTALLING ELMER MODULE meshgen2d make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' Making install in src make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' Making install in include make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' test -z "/usr/bin" || /bin/mkdir -p "/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin" /usr/bin/install -c ElmerMesh2D Mesh2D '/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' CONFIGURING ELMER MODULE fem configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure: WARNING: unrecognized options: --with-metis checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ftello... yes checking for fseeko... yes checking for answer to meaning of life... 42 checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for /lib/cpp... yes checking for C++ linker flags... -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -L/usr/lib/x86_64-linux-gnu -lstdc++ -lm -lgcc_s -lgcc_s checking how to run the C preprocessor... /lib/cpp checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for Fortran char* mangling scheme... char_ptr checking if fortran implements CONTIGUOUS attribute... yes checking for fortran intrinsic etime... found checking for fortran intrinsic flush... found checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for mpi-directory... /usr checking for mpi-lib-directory... /usr/lib checking for mpi-inc-directory... /usr/include/mpi checking for mpi-library... checking for mpi-include... checking for compilation of an MPI program... seems ok checking for mpf90... no checking for mpxlf90... no checking for saxpy_ in -lblas... checking for in ... yes checking for cheev_ in -llapack... yes checking for huti_d_gmres_ in -lhuti... yes checking for eio_init_ in -leiof... yes checking for dseupd_ in -larpack... yes checking for pdneupd_ in -lparpack... yes checking for HYPRE_IJMatrixCreate in -lHYPRE_IJ_mv... yes checking for dmumps_ in -ldmumps_scotch... yes checking for umfpack_di_defaults in -lumfpack... yes checking for mtc_init in -lmatc... yes checking for main in -lm... yes checking for *.mod-file naming convention... modulename.mod checking for option to tell gfortran where to put *.mod-files... -J checking size of off_t... 8 ./configure: line 12975: 0: command not found defining FPICFLAG to be -fPIC defining CPICFLAG to be -fPIC defining CXXPICFLAG to be -fPIC defining SHLEXT to be so defining SHLLIB to be $(SHLEXT) defining SHLBIN to be defining SHLEXT_VER to be $(SHLEXT).$(version) defining SHLLIB_VER to be $(SHLLIB).$(version) defining SHLBIN_VER to be $(SHLBIN).$(version) defining SHLLINKEXT to be defining DLFCN_DIR to be defining SH_LD to be gfortran defining SH_LDFLAGS to be -shared defining SH_LINKING_TO_FLAGS to be -m64 -fPIC defining DL_LD to be $(SH_LD) defining DL_LDFLAGS to be $(SH_LDFLAGS) defining MKOCTFILE_DL_LDFLAGS to be defining SONAME_FLAGS to be defining NO_OCT_FILE_STRIP to be defining RLD_FLAG to be defining TEMPLATE_AR to be defining TEMPLATE_ARFLAGS to be defining library_path_var to be defining FCPPFLAGS to be -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS defining LIBSOLVER_DEPS to be -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib defining OFF_KIND to be selected_int_kind(18) defining LONG_KIND to be configure: creating ./config.status config.status: creating tests/runtests config.status: creating src/elmerf90 config.status: creating src/elmerf90-nosh config.status: creating src/elmerld config.status: creating Makefile config.status: creating Makeconf config.status: creating src/Makefile config.status: creating src/view3d/Makefile config.status: creating src/viewaxis/Makefile config.status: creating src/binio/Makefile config.status: creating src/binio/kinds.f90 config.status: creating src/binio/test/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis ELMER build options: Version 6.1 Install prefix /usr CPPFLAGS -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi FCPPFLAGS -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS CFLAGS -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi CXXFLAGS -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -fPIC FCFLAGS -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include FFLAGS -g -O2 -m64 -fPIC -fPIC -I. -I/usr/include/mpi LDFLAGS -L. -L/usr/lib LIBS -L. -ldl -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm SOLVER_LIBS -L. -ldl -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm -larpack -lparpack -lHYPRE_Euclid -lHYPRE_parcsr_ls -lHYPRE_ParaSails -lHYPRE_IJ_mv -ldmumps_scotch -lumfpack -lamd -lhuti -lmatc -leiof -L. -ldl -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm -llapack -lblas -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -L/usr/lib/x86_64-linux-gnu -lstdc++ -lm -lgcc_s -lgcc_s Compilers: Fortran 90 compiler gfortran Fortran 77 compiler gfortran CC gcc C++ g++ CPP /lib/cpp Libs: BLAS -lblas LAPACK -llapack HYPRE -lHYPRE_Euclid -lHYPRE_parcsr_ls -lHYPRE_ParaSails -lHYPRE_IJ_mv MUMPS -ldmumps_scotch UMFPACK -lumfpack -lamd ARPACK -larpack PARPACK -lparpack HUTI -lhuti EIO -leiof MPI -L/usr/lib MPI: yes BUILDING ELMER MODULE fem make[1]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem' make all-recursive make[2]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem' Making all in src make[3]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src' Making all in view3d make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/view3d' gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT ViewFactors.o -MD -MP -MF .deps/ViewFactors.Tpo -c -o ViewFactors.o ViewFactors.c ViewFactors.c:486:4: warning: implicit declaration of function 'elm_4node_quad_shape_functions' is invalid in C99 [-Wimplicit-function-declaration] elm_4node_quad_shape_functions( ShapeFunctionMatrix4 ); ^ 1 warning generated. mv -f .deps/ViewFactors.Tpo .deps/ViewFactors.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT TestModel.o -MD -MP -MF .deps/TestModel.Tpo -c -o TestModel.o TestModel.c TestModel.c:254:29: warning: conversion specifies type 'int' but the argument has type 'unsigned long' [-Wformat] fprintf( stderr, "SIZE: %d\n", NElements*sizeof(Geometry_t) ); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu 1 warning generated. mv -f .deps/TestModel.Tpo .deps/TestModel.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT LineUtil.o -MD -MP -MF .deps/LineUtil.Tpo -c -o LineUtil.o LineUtil.c mv -f .deps/LineUtil.Tpo .deps/LineUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT TriangleUtil.o -MD -MP -MF .deps/TriangleUtil.Tpo -c -o TriangleUtil.o TriangleUtil.c mv -f .deps/TriangleUtil.Tpo .deps/TriangleUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiLinearUtil.o -MD -MP -MF .deps/BiLinearUtil.Tpo -c -o BiLinearUtil.o BiLinearUtil.c mv -f .deps/BiLinearUtil.Tpo .deps/BiLinearUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiQuadraticUtil.o -MD -MP -MF .deps/BiQuadraticUtil.Tpo -c -o BiQuadraticUtil.o BiQuadraticUtil.c mv -f .deps/BiQuadraticUtil.Tpo .deps/BiQuadraticUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiCubicUtil.o -MD -MP -MF .deps/BiCubicUtil.Tpo -c -o BiCubicUtil.o BiCubicUtil.c mv -f .deps/BiCubicUtil.Tpo .deps/BiCubicUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT RayTrace.o -MD -MP -MF .deps/RayTrace.Tpo -c -o RayTrace.o RayTrace.c RayTrace.c:78:41: warning: '&&' within '||' [-Wlogical-op-parentheses] BBox->XMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxR && FX+DX>R || FX<-R && FX+DX<-R || ~~~~~~~~~~~~~~~ ^ RayTrace.c:686:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:686:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:686:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:686:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:686:50: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:687:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:687:29: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:687:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:687:50: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:688:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:688:29: note: place parentheses around the '&&' expression to silence this warning FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ^ ( ) RayTrace.c:746:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ~~~~~~~~~~~~~~~ ^ RayTrace.c:746:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:746:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:746:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:746:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:746:50: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:747:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:747:29: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:747:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:747:50: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:748:33: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:748:33: note: place parentheses around the '&&' expression to silence this warning FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ^ ( ) RayTrace.c:863:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ RayTrace.c:863:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:863:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:863:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:863:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:863:82: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:864:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:864:45: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:864:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:864:82: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:865:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:865:45: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) RayTrace.c:965:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ RayTrace.c:965:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:965:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:965:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:965:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:965:82: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:966:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:966:45: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:966:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:966:82: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:967:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:967:45: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) 30 warnings generated. mv -f .deps/RayTrace.Tpo .deps/RayTrace.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT VectorUtil.o -MD -MP -MF .deps/VectorUtil.Tpo -c -o VectorUtil.o VectorUtil.c mv -f .deps/VectorUtil.Tpo .deps/VectorUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT LUDecomp.o -MD -MP -MF .deps/LUDecomp.Tpo -c -o LUDecomp.o LUDecomp.c mv -f .deps/LUDecomp.Tpo .deps/LUDecomp.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT 2d_4node.o -MD -MP -MF .deps/2d_4node.Tpo -c -o 2d_4node.o 2d_4node.c mv -f .deps/2d_4node.Tpo .deps/2d_4node.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT 16node_quad.o -MD -MP -MF .deps/16node_quad.Tpo -c -o 16node_quad.o 16node_quad.c mv -f .deps/16node_quad.Tpo .deps/16node_quad.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT second.o -MD -MP -MF .deps/second.Tpo -c -o second.o second.c mv -f .deps/second.Tpo .deps/second.Po rm -f libview3d.a ar cru libview3d.a ViewFactors.o TestModel.o LineUtil.o TriangleUtil.o BiLinearUtil.o BiQuadraticUtil.o BiCubicUtil.o RayTrace.o VectorUtil.o LUDecomp.o 2d_4node.o 16node_quad.o second.o ranlib libview3d.a make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/view3d' Making all in viewaxis make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/viewaxis' g++ -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -fPIC -MT viewfact.o -MD -MP -MF .deps/viewfact.Tpo -c -o viewfact.o viewfact.cpp mv -f .deps/viewfact.Tpo .deps/viewfact.Po rm -f libviewaxis.a ar cru libviewaxis.a viewfact.o ranlib libviewaxis.a make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/viewaxis' Making all in binio make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' Making all in test make[5]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio/test' make[5]: Nothing to be done for `all'. make[5]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio/test' make[5]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT binio.o -MD -MP -MF .deps/binio.Tpo -c -o binio.o binio.c mv -f .deps/binio.Tpo .deps/binio.Po gfortran -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include -c -o kinds.o kinds.f90 gfortran -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include -c -o biniomod.o biniomod.f90 rm -f libbinio.a ar cru libbinio.a binio.o kinds.o biniomod.o ranlib libbinio.a make[5]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' make[4]: Entering directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT SC2Elmer.o -MD -MP -MF .deps/SC2Elmer.Tpo -c -o SC2Elmer.o SC2Elmer.c mv -f .deps/SC2Elmer.Tpo .deps/SC2Elmer.Po gcc -g -O2 -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -L. -L/usr/lib -o SC2Elmer SC2Elmer.o -L. -ldl -L/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm cp mpif_stub.h mpif /lib/cpp -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src > NavierStokes.f90 0 libLLVM-2.9.so.1 0x00002b13cf0fcc6f 1 libLLVM-2.9.so.1 0x00002b13cf0fd211 2 libpthread.so.0 0x00002b13cf957020 3 cpp 0x000000000057b5ef clang::driver::Driver::BuildActions(clang::driver::ToolChain const&, clang::driver::DerivedArgList const&, llvm::SmallVector&) const + 879 4 cpp 0x0000000000581f95 clang::driver::Driver::BuildCompilation(int, char const**) + 2261 5 cpp 0x00000000005237d0 main + 2528 6 libc.so.6 0x00002b13d0732ead __libc_start_main + 253 7 cpp 0x0000000000524065 Stack dump: 0. Program arguments: /lib/cpp -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=,CONTIGUOUS -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src 1. Compilation construction 2. Building compilation actions /bin/bash: line 1: 20062 Segmentation fault /lib/cpp -I/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src > NavierStokes.f90 make[4]: *** [NavierStokes.f90] Error 139 make[4]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem/src' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem' make[1]: *** [all] Error 2 make[1]: Leaving directory `/build/elmerfem-h0kSBI/elmerfem-6.1.0.svn.5272.dfsg/fem' make: *** [stamp-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1240 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-e12370ed-5f7d-4d6c-bb40-e1765a4dbd75/build/elmerfem-h0kSBI Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 144204 Build-Time: 71 Distribution: lsid64c Fail-Stage: build Install-Time: 30 Job: elmerfem_6.1.0.svn.5272.dfsg-1 Package: elmerfem Package-Time: 146 Source-Version: 6.1.0.svn.5272.dfsg-1 Space: 144204 Status: attempted Version: 6.1.0.svn.5272.dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1240 Build needed 00:02:26, 144204k disc space DC-Message: Failed, but took only 747.066868. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-101.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ elmerfem 6.1.0.svn.5272.dfsg-1 (amd64) 11 Sep 2011 13:00 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: elmerfem Version: 6.1.0.svn.5272.dfsg-1 Source Version: 6.1.0.svn.5272.dfsg-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (62.0 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'elmerfem' packaging is maintained in the 'Git' version control system at: git://git.debian.org/git/debian-science/packages/elmerfem.git Need to get 21.6 MB of source archives. Get:1 http://localhost/debian/ sid/main elmerfem 6.1.0.svn.5272.dfsg-1 (dsc) [2084 B] Get:2 http://localhost/debian/ sid/main elmerfem 6.1.0.svn.5272.dfsg-1 (tar) [21.6 MB] Get:3 http://localhost/debian/ sid/main elmerfem 6.1.0.svn.5272.dfsg-1 (diff) [22.3 kB] Fetched 21.6 MB in 0s (61.9 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/elmerfem-uM4zmY/resolver-RWqmjs/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-dc2ab76c-e27b-4ee8-a4d2-54355f54516a/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev | libblas-3gf.so, liblapack-dev | liblapack-3gf.so, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.4-dev, tcl8.4-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev | libgl-dev, libglu1-mesa-dev | libglu-dev, libopencascade-modeling-dev, libqt4-dev, qt4-qmake, libqt4-opengl-dev, libqwt5-qt4-dev, libvtk5-qt4-dev (>= 5.6), python-qt4-dev, libscotchmetis-dev, r-base-core, libavcodec-dev, libavutil-dev, libswscale-dev Merged Build-Conflicts: libatlas-base-dev, libatlas3gf-base Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev, liblapack-dev, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.4-dev, tcl8.4-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev, libglu1-mesa-dev, libopencascade-modeling-dev, libqt4-dev, qt4-qmake, libqt4-opengl-dev, libqwt5-qt4-dev, libvtk5-qt4-dev (>= 5.6), python-qt4-dev, libscotchmetis-dev, r-base-core, libavcodec-dev, libavutil-dev, libswscale-dev Filtered Build-Conflicts: libatlas-base-dev, libatlas3gf-base dpkg-deb: building package `sbuild-build-depends-elmerfem-dummy' in `/build/elmerfem-uM4zmY/resolver-wsV9G0/apt_archive/sbuild-build-depends-elmerfem-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install elmerfem build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser autoconf automake autotools-dev bsdmainutils ca-certificates comerr-dev debhelper diffstat file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian krb5-multidev libamd2.2.0 libarpack2 libarpack2-dev libaudio2 libavcodec-dev libavcodec53 libavformat-dev libavformat53 libavutil-dev libavutil51 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3gf libbtf1.1.0 libcairo2 libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3-gnutls libcxsparse2.2.3 libdatrie1 libdb4.8 libdbus-1-3 libdirac-encoder0 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgcrypt11 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libgl2ps-dev libgl2ps0 libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls26 libgpg-error0 libgsm1 libgssapi-krb5-2 libgssrpc4 libhdf5-serial-1.8.4 libhypre-2.4.0 libhypre-dev libibverbs-dev libibverbs1 libice-dev libice6 libidn11 libjpeg62 libjpeg8 libjpeg8-dev libjs-jquery libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-5 libkeyutils1 libklu1.1.0 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3gf liblcms1 libldap-2.4-2 libldl2.0.1 libmagic1 libmng1 libmp3lame0 libmumps-4.9.2 libmumps-dev libmumps-scotch-4.9.2 libmumps-scotch-dev libmysqlclient-dev libmysqlclient16 libncurses5-dev libnetcdf-dev libnetcdf6 libnuma1 libogg0 libopencascade-foundation-6.5.0 libopencascade-foundation-dev libopencascade-modeling-6.5.0 libopencascade-modeling-dev libopenjpeg2 libopenmpi-dev libopenmpi1.3 liborc-0.4-0 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libpython2.6 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libqwt5-qt4 libqwt5-qt4-dev libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libscalapack-mpi-dev libscalapack-mpi1 libschroedinger-1.0-0 libscotch-5.1 libscotch-dev libscotchmetis-dev libsm-dev libsm6 libspeex1 libsqlite3-0 libssl-dev libssl1.0.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale-dev libswscale2 libtasn1-3 libthai-data libthai0 libtheora0 libtiff4 libtiff4-dev libtiffxx0c2 libtorque2 libumfpack5.4.0 libunistring0 libva1 libvorbis0a libvorbisenc2 libvpx0 libvtk5-dev libvtk5-qt4-dev libvtk5.6 libvtk5.6-qt4 libx11-6 libx11-data libx11-dev libx264-116 libxau-dev libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxml2-dev libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm1 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common openmpi-bin openmpi-common openssl pkg-config po-debconf python python-dev python-minimal python-qt4-dev python-sip python-sip-dev python2.6 python2.6-dev python2.6-minimal qt4-linguist-tools qt4-qmake quilt r-base-core tcl8.4 tcl8.4-dev tcl8.5 tcl8.5-dev tk8.4 tk8.4-dev tk8.5 tk8.5-dev ttf-dejavu-core ucf unzip x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev Suggested packages: liblocale-gettext-perl autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation doc-base dh-make defoma gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff krb5-doc nas libfaad-dev libgsm1-dev libogg-dev libschroedinger-dev libspeex-dev libtheora-dev libvorbis-dev libraw1394-dev libdc1394-22-dev rng-tools gnutls-bin krb5-user hypre-doc liblcms-utils ncurses-doc netcdf-bin netcdf-doc opencascade-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp postgresql-doc-9.1 libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles qt4-qmlviewer firebird2.1-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt4-qtconfig scalapack-doc speex vtk-examples vtk-doc www-browser libmail-box-perl python-doc python-tk python2.6-doc binfmt-support procmail graphviz ess r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline tcl8.4-doc tcl8.5-doc tk8.4-doc tk8.5-doc gvfs-bin Recommended packages: curl wget lynx-cur autopoint atlas3-base dbus libgl1-mesa-dri libglib2.0-data shared-mime-info javascript-common x-ttcidfont-conf libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libqt4-sql-sqlite2 libqt4-sql-ibase libcups2 libsasl2-modules libssl-doc xml-core openmpi-checkpoint libmail-sendmail-perl r-recommended r-base-dev r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adduser autoconf automake autotools-dev bsdmainutils ca-certificates comerr-dev debhelper diffstat file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian krb5-multidev libamd2.2.0 libarpack2 libarpack2-dev libaudio2 libavcodec-dev libavcodec53 libavformat-dev libavformat53 libavutil-dev libavutil51 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3gf libbtf1.1.0 libcairo2 libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3-gnutls libcxsparse2.2.3 libdatrie1 libdb4.8 libdbus-1-3 libdirac-encoder0 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgcrypt11 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libgl2ps-dev libgl2ps0 libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls26 libgpg-error0 libgsm1 libgssapi-krb5-2 libgssrpc4 libhdf5-serial-1.8.4 libhypre-2.4.0 libhypre-dev libibverbs-dev libibverbs1 libice-dev libice6 libidn11 libjpeg62 libjpeg8 libjpeg8-dev libjs-jquery libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-5 libkeyutils1 libklu1.1.0 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3gf liblcms1 libldap-2.4-2 libldl2.0.1 libmagic1 libmng1 libmp3lame0 libmumps-4.9.2 libmumps-dev libmumps-scotch-4.9.2 libmumps-scotch-dev libmysqlclient-dev libmysqlclient16 libncurses5-dev libnetcdf-dev libnetcdf6 libnuma1 libogg0 libopencascade-foundation-6.5.0 libopencascade-foundation-dev libopencascade-modeling-6.5.0 libopencascade-modeling-dev libopenjpeg2 libopenmpi-dev libopenmpi1.3 liborc-0.4-0 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libpython2.6 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libqwt5-qt4 libqwt5-qt4-dev libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libscalapack-mpi-dev libscalapack-mpi1 libschroedinger-1.0-0 libscotch-5.1 libscotch-dev libscotchmetis-dev libsm-dev libsm6 libspeex1 libsqlite3-0 libssl-dev libssl1.0.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale-dev libswscale2 libtasn1-3 libthai-data libthai0 libtheora0 libtiff4 libtiff4-dev libtiffxx0c2 libtorque2 libumfpack5.4.0 libunistring0 libva1 libvorbis0a libvorbisenc2 libvpx0 libvtk5-dev libvtk5-qt4-dev libvtk5.6 libvtk5.6-qt4 libx11-6 libx11-data libx11-dev libx264-116 libxau-dev libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxml2-dev libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm1 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common openmpi-bin openmpi-common openssl pkg-config po-debconf python python-dev python-minimal python-qt4-dev python-sip python-sip-dev python2.6 python2.6-dev python2.6-minimal qt4-linguist-tools qt4-qmake quilt r-base-core sbuild-build-depends-elmerfem-dummy tcl8.4 tcl8.4-dev tcl8.5 tcl8.5-dev tk8.4 tk8.4-dev tk8.5 tk8.5-dev ttf-dejavu-core ucf unzip x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev 0 upgraded, 271 newly installed, 0 to remove and 0 not upgraded. Need to get 207 MB/207 MB of archives. After this operation, 659 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libssl1.0.0 libgpg-error0 libgcrypt11 libp11-kit0 libtasn1-3 libgnutls26 libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libgssrpc4 libidn11 libkadm5clnt-mit8 libkdb5-5 libkadm5srv-mit8 libsasl2-2 libldap-2.4-2 libpcre3 libxau6 x11-common libice6 libsm6 libxdmcp6 libxcb1 libx11-data libx11-6 libxt6 libaudio2 librtmp0 openssl ca-certificates libcurl3-gnutls libdatrie1 libdbus-1-3 libdrm2 libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libgfortran3 libglapi-mesa libxfixes3 libxdamage1 libxext6 libxxf86vm1 libgl1-mesa-glx libglu1-mesa libjpeg62 liblcms1 libmng1 libmp3lame0 libpixman-1-0 libpng12-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libglib2.0-0 libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libxss1 libdb4.8 adduser bsdmainutils groff-base libpopt0 man-db libmagic1 file gettext-base libsqlite3-0 libxml2 m4 mime-support python2.6-minimal python2.6 python-minimal python autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper diffstat gfortran-4.6 gfortran comerr-dev krb5-multidev libamd2.2.0 libblas3gf liblapack3gf libibverbs1 libnuma1 libtorque2 libopenmpi1.3 libarpack2 libavutil51 libdirac-encoder0 libgsm1 libopenjpeg2 liborc-0.4-0 libschroedinger-1.0-0 libspeex1 libogg0 libtheora0 libva1 libvorbis0a libvorbisenc2 libvpx0 libx264-116 libxvidcore4 libavcodec53 libavutil-dev libavcodec-dev libavformat53 libavformat-dev libblas-dev libbtf1.1.0 libcamd2.2.0 libccolamd2.7.1 libcolamd2.7.1 libcholmod1.7.1 libcsparse2.2.3 libcxsparse2.2.3 libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libftgl2 xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev mesa-common-dev x11proto-xext-dev libxext-dev libgl1-mesa-dev libglu1-mesa-dev libftgl-dev libgl2ps0 libgl2ps-dev libhdf5-serial-1.8.4 libice-dev libjpeg8 libjpeg8-dev libjs-jquery libklu1.1.0 liblapack-dev libldl2.0.1 mysql-common libmysqlclient16 libmysqlclient-dev libncurses5-dev libnetcdf6 libnetcdf-dev libpaper1 libpaper-utils libpng12-dev libpq5 libssl-dev libkrb5-dev libpq-dev libpython2.6 libqtcore4 libqt4-xml libqt4-dbus libqt4-network libqt4-script libqt4-sql libqt4-xmlpatterns libtiff4 libqtgui4 libqt4-declarative libqt4-designer libqt4-help libqt4-qt3support libqt4-scripttools libqt4-svg libqt4-test qt4-linguist-tools qt4-qmake libqt4-dev libqt4-opengl libqt4-opengl-dev libqwt5-qt4 libqwt5-qt4-dev libreadline6-dev libreadline-dev libsm-dev libumfpack5.4.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale2 libswscale-dev libtiffxx0c2 libtiff4-dev libvtk5.6 libxt-dev x11proto-scrnsaver-dev libxss-dev x11proto-render-dev libxrender-dev libxft-dev tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev libxml2-dev openmpi-common libibverbs-dev libopenmpi-dev mpi-default-dev libvtk5-dev libvtk5.6-qt4 libvtk5-qt4-dev python2.6-dev python-dev python-sip python-sip-dev python-qt4-dev quilt zip unzip xdg-utils r-base-core tcl8.4 tcl8.4-dev tk8.4 tk8.4-dev libarpack2-dev openmpi-bin mpi-default-bin libblacs-mpi1 libblacs-mpi-dev libhypre-2.4.0 libhypre-dev libscalapack-mpi1 libmumps-4.9.2 libscalapack-mpi-dev libmumps-dev libscotch-5.1 libmumps-scotch-4.9.2 libmumps-scotch-dev libopencascade-foundation-6.5.0 libopencascade-foundation-dev libopencascade-modeling-6.5.0 libopencascade-modeling-dev libscotch-dev libscotchmetis-dev sbuild-build-depends-elmerfem-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libssl1.0.0 amd64 1.0.0e-2 [1143 kB] Get:3 http://localhost/debian/ sid/main libgpg-error0 amd64 1.10-1 [66.6 kB] Get:4 http://localhost/debian/ sid/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:5 http://localhost/debian/ sid/main libp11-kit0 amd64 0.4-2 [45.2 kB] Get:6 http://localhost/debian/ sid/main libtasn1-3 amd64 2.9-4 [63.9 kB] Get:7 http://localhost/debian/ sid/main libgnutls26 amd64 2.12.10-1 [784 kB] Get:8 http://localhost/debian/ sid/main libkeyutils1 amd64 1.5.2-2 [8860 B] Get:9 http://localhost/debian/ sid/main libkrb5support0 amd64 1.9.1+dfsg-2 [47.1 kB] Get:10 http://localhost/debian/ sid/main libk5crypto3 amd64 1.9.1+dfsg-2 [111 kB] Get:11 http://localhost/debian/ sid/main libkrb5-3 amd64 1.9.1+dfsg-2 [381 kB] Get:12 http://localhost/debian/ sid/main libgssapi-krb5-2 amd64 1.9.1+dfsg-2 [147 kB] Get:13 http://localhost/debian/ sid/main libgssrpc4 amd64 1.9.1+dfsg-2 [85.4 kB] Get:14 http://localhost/debian/ sid/main libidn11 amd64 1.22-3 [165 kB] Get:15 http://localhost/debian/ sid/main libkadm5clnt-mit8 amd64 1.9.1+dfsg-2 [64.9 kB] Get:16 http://localhost/debian/ sid/main libkdb5-5 amd64 1.9.1+dfsg-2 [63.0 kB] Get:17 http://localhost/debian/ sid/main libkadm5srv-mit8 amd64 1.9.1+dfsg-2 [81.1 kB] Get:18 http://localhost/debian/ sid/main libsasl2-2 amd64 2.1.24~rc1.dfsg1+cvs2011-05-23-6 [119 kB] Get:19 http://localhost/debian/ sid/main libldap-2.4-2 amd64 2.4.25-3 [235 kB] Get:20 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:21 http://localhost/debian/ sid/main libxau6 amd64 1:1.0.6-3 [17.0 kB] Get:22 http://localhost/debian/ sid/main x11-common all 1:7.6+8 [276 kB] Get:23 http://localhost/debian/ sid/main libice6 amd64 2:1.0.7-2 [56.5 kB] Get:24 http://localhost/debian/ sid/main libsm6 amd64 2:1.2.0-2 [29.8 kB] Get:25 http://localhost/debian/ sid/main libxdmcp6 amd64 1:1.1.0-3 [22.9 kB] Get:26 http://localhost/debian/ sid/main libxcb1 amd64 1.7-3 [45.4 kB] Get:27 http://localhost/debian/ sid/main libx11-data all 2:1.4.4-1 [183 kB] Get:28 http://localhost/debian/ sid/main libx11-6 amd64 2:1.4.4-1 [889 kB] Get:29 http://localhost/debian/ sid/main libxt6 amd64 1:1.1.1-2 [207 kB] Get:30 http://localhost/debian/ sid/main libaudio2 amd64 1.9.2-9 [85.4 kB] Get:31 http://localhost/debian/ sid/main librtmp0 amd64 2.4~20110711.gitc28f1bab-1 [61.4 kB] Get:32 http://localhost/debian/ sid/main openssl amd64 1.0.0e-2 [679 kB] Get:33 http://localhost/debian/ sid/main ca-certificates all 20110502+nmu1 [174 kB] Get:34 http://localhost/debian/ sid/main libcurl3-gnutls amd64 7.21.7-2 [298 kB] Get:35 http://localhost/debian/ sid/main libdatrie1 amd64 0.2.4-3 [27.6 kB] Get:36 http://localhost/debian/ sid/main libdbus-1-3 amd64 1.4.14-1 [163 kB] Get:37 http://localhost/debian/ sid/main libdrm2 amd64 2.4.26-1 [428 kB] Get:38 http://localhost/debian/ sid/main libexpat1 amd64 2.0.1-7 [137 kB] Get:39 http://localhost/debian/ sid/main libfreetype6 amd64 2.4.6-2 [435 kB] Get:40 http://localhost/debian/ sid/main ucf all 3.0025+nmu2 [70.6 kB] Get:41 http://localhost/debian/ sid/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:42 http://localhost/debian/ sid/main fontconfig-config all 2.8.0-3 [221 kB] Get:43 http://localhost/debian/ sid/main libfontconfig1 amd64 2.8.0-3 [282 kB] Get:44 http://localhost/debian/ sid/main libgfortran3 amd64 4.6.1-10 [358 kB] Get:45 http://localhost/debian/ sid/main libglapi-mesa amd64 7.11-5 [55.1 kB] Get:46 http://localhost/debian/ sid/main libxfixes3 amd64 1:5.0-4 [21.5 kB] Get:47 http://localhost/debian/ sid/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:48 http://localhost/debian/ sid/main libxext6 amd64 2:1.3.0-3 [52.3 kB] Get:49 http://localhost/debian/ sid/main libxxf86vm1 amd64 1:1.1.1-2 [18.2 kB] Get:50 http://localhost/debian/ sid/main libgl1-mesa-glx amd64 7.11-5 [155 kB] Get:51 http://localhost/debian/ sid/main libglu1-mesa amd64 7.11-5 [220 kB] Get:52 http://localhost/debian/ sid/main libjpeg62 amd64 6b1-2 [94.1 kB] Get:53 http://localhost/debian/ sid/main liblcms1 amd64 1.19.dfsg-1 [111 kB] Get:54 http://localhost/debian/ sid/main libmng1 amd64 1.0.10-2 [235 kB] Get:55 http://localhost/debian/ sid/main libmp3lame0 amd64 3.98.4+repack2-6 [302 kB] Get:56 http://localhost/debian/ sid/main libpixman-1-0 amd64 0.22.2-1 [356 kB] Get:57 http://localhost/debian/ sid/main libpng12-0 amd64 1.2.46-3 [188 kB] Get:58 http://localhost/debian/ sid/main libxcb-render0 amd64 1.7-3 [16.3 kB] Get:59 http://localhost/debian/ sid/main libxcb-shm0 amd64 1.7-3 [9458 B] Get:60 http://localhost/debian/ sid/main libxrender1 amd64 1:0.9.6-2 [31.5 kB] Get:61 http://localhost/debian/ sid/main libcairo2 amd64 1.10.2-6.1 [948 kB] Get:62 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:63 http://localhost/debian/ sid/main libthai-data all 0.1.15-2 [201 kB] Get:64 http://localhost/debian/ sid/main libthai0 amd64 0.1.15-2 [42.9 kB] Get:65 http://localhost/debian/ sid/main libxft2 amd64 2.2.0-3 [58.1 kB] Get:66 http://localhost/debian/ sid/main fontconfig amd64 2.8.0-3 [334 kB] Get:67 http://localhost/debian/ sid/main libpango1.0-0 amd64 1.28.4-3 [442 kB] Get:68 http://localhost/debian/ sid/main libxss1 amd64 1:1.2.1-2 [16.9 kB] Get:69 http://localhost/debian/ sid/main libdb4.8 amd64 4.8.30-9 [694 kB] Get:70 http://localhost/debian/ sid/main adduser all 3.113 [218 kB] Get:71 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:72 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:73 http://localhost/debian/ sid/main libpopt0 amd64 1.16-1 [54.1 kB] Get:74 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:75 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:76 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:77 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:78 http://localhost/debian/ sid/main libsqlite3-0 amd64 3.7.7-2 [420 kB] Get:79 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:80 http://localhost/debian/ sid/main m4 amd64 1.4.16-2 [259 kB] Get:81 http://localhost/debian/ sid/main mime-support all 3.51-1 [35.0 kB] Get:82 http://localhost/debian/ sid/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:83 http://localhost/debian/ sid/main python2.6 amd64 2.6.7-4 [2483 kB] Get:84 http://localhost/debian/ sid/main python-minimal all 2.6.7-3 [39.2 kB] Get:85 http://localhost/debian/ sid/main python all 2.6.7-3 [177 kB] Get:86 http://localhost/debian/ sid/main autoconf all 2.68-1 [804 kB] Get:87 http://localhost/debian/ sid/main autotools-dev all 20110511.1 [73.8 kB] Get:88 http://localhost/debian/ sid/main automake all 1:1.11.1-1 [611 kB] Get:89 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:90 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:91 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:92 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:93 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:94 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:95 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:96 http://localhost/debian/ sid/main diffstat amd64 1.54-1 [29.0 kB] Get:97 http://localhost/debian/ sid/main gfortran-4.6 amd64 4.6.1-10 [5558 kB] Get:98 http://localhost/debian/ sid/main gfortran amd64 4:4.6.1-2 [1124 B] Get:99 http://localhost/debian/ sid/main comerr-dev amd64 2.1-1.42~WIP-2011-07-02-1 [42.4 kB] Get:100 http://localhost/debian/ sid/main krb5-multidev amd64 1.9.1+dfsg-2 [115 kB] Get:101 http://localhost/debian/ sid/main libamd2.2.0 amd64 1:3.4.0-2 [29.2 kB] Get:102 http://localhost/debian/ sid/main libblas3gf amd64 1.2.20110419-2 [292 kB] Get:103 http://localhost/debian/ sid/main liblapack3gf amd64 3.3.1-1 [4437 kB] Get:104 http://localhost/debian/ sid/main libibverbs1 amd64 1.1.5-1 [35.0 kB] Get:105 http://localhost/debian/ sid/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:106 http://localhost/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:107 http://localhost/debian/ sid/main libopenmpi1.3 amd64 1.4.3-2.1 [1439 kB] Get:108 http://localhost/debian/ sid/main libarpack2 amd64 2.1+parpack96.dfsg-3+b1 [289 kB] Get:109 http://localhost/debian/ sid/main libavutil51 amd64 4:0.7.1-5 [91.9 kB] Get:110 http://localhost/debian/ sid/main libdirac-encoder0 amd64 1.0.2-4 [388 kB] Get:111 http://localhost/debian/ sid/main libgsm1 amd64 1.0.13-3 [28.7 kB] Get:112 http://localhost/debian/ sid/main libopenjpeg2 amd64 1.3+dfsg-4 [79.5 kB] Get:113 http://localhost/debian/ sid/main liborc-0.4-0 amd64 1:0.4.14-1 [177 kB] Get:114 http://localhost/debian/ sid/main libschroedinger-1.0-0 amd64 1.0.10-2.1 [278 kB] Get:115 http://localhost/debian/ sid/main libspeex1 amd64 1.2~rc1-1 [60.4 kB] Get:116 http://localhost/debian/ sid/main libogg0 amd64 1.2.2~dfsg-1 [18.6 kB] Get:117 http://localhost/debian/ sid/main libtheora0 amd64 1.1.1+dfsg.1-3 [381 kB] Get:118 http://localhost/debian/ sid/main libva1 amd64 1.0.12-2 [40.3 kB] Get:119 http://localhost/debian/ sid/main libvorbis0a amd64 1.3.2-1 [107 kB] Get:120 http://localhost/debian/ sid/main libvorbisenc2 amd64 1.3.2-1 [144 kB] Get:121 http://localhost/debian/ sid/main libvpx0 amd64 0.9.7.p1-1 [268 kB] Get:122 http://localhost/debian/ sid/main libx264-116 amd64 2:0.116.2042+git178455c-1+b1 [413 kB] Get:123 http://localhost/debian/ sid/main libxvidcore4 amd64 2:1.3.2-5 [327 kB] Get:124 http://localhost/debian/ sid/main libavcodec53 amd64 4:0.7.1-5 [2711 kB] Get:125 http://localhost/debian/ sid/main libavutil-dev amd64 4:0.7.1-5 [135 kB] Get:126 http://localhost/debian/ sid/main libavcodec-dev amd64 4:0.7.1-5 [3144 kB] Get:127 http://localhost/debian/ sid/main libavformat53 amd64 4:0.7.1-5 [495 kB] Get:128 http://localhost/debian/ sid/main libavformat-dev amd64 4:0.7.1-5 [652 kB] Get:129 http://localhost/debian/ sid/main libblas-dev amd64 1.2.20110419-2 [311 kB] Get:130 http://localhost/debian/ sid/main libbtf1.1.0 amd64 1:3.4.0-2 [13.9 kB] Get:131 http://localhost/debian/ sid/main libcamd2.2.0 amd64 1:3.4.0-2 [27.7 kB] Get:132 http://localhost/debian/ sid/main libccolamd2.7.1 amd64 1:3.4.0-2 [31.0 kB] Get:133 http://localhost/debian/ sid/main libcolamd2.7.1 amd64 1:3.4.0-2 [22.2 kB] Get:134 http://localhost/debian/ sid/main libcholmod1.7.1 amd64 1:3.4.0-2 [456 kB] Get:135 http://localhost/debian/ sid/main libcsparse2.2.3 amd64 1:3.4.0-2 [29.8 kB] Get:136 http://localhost/debian/ sid/main libcxsparse2.2.3 amd64 1:3.4.0-2 [110 kB] Get:137 http://localhost/debian/ sid/main libexpat1-dev amd64 2.0.1-7 [221 kB] Get:138 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Get:139 http://localhost/debian/ sid/main libfreetype6-dev amd64 2.4.6-2 [797 kB] Get:140 http://localhost/debian/ sid/main pkg-config amd64 0.26-1 [59.5 kB] Get:141 http://localhost/debian/ sid/main libfontconfig1-dev amd64 2.8.0-3 [833 kB] Get:142 http://localhost/debian/ sid/main libftgl2 amd64 2.1.3~rc5-3 [110 kB] Get:143 http://localhost/debian/ sid/main xorg-sgml-doctools all 1:1.8-2 [20.0 kB] Get:144 http://localhost/debian/ sid/main x11proto-core-dev all 7.0.22-1 [323 kB] Get:145 http://localhost/debian/ sid/main libxau-dev amd64 1:1.0.6-3 [20.5 kB] Get:146 http://localhost/debian/ sid/main libxdmcp-dev amd64 1:1.1.0-3 [56.5 kB] Get:147 http://localhost/debian/ sid/main x11proto-input-dev all 2.0.2-2 [82.3 kB] Get:148 http://localhost/debian/ sid/main x11proto-kb-dev all 1.0.5-2 [27.5 kB] Get:149 http://localhost/debian/ sid/main xtrans-dev all 1.2.6-2 [101 kB] Get:150 http://localhost/debian/ sid/main libpthread-stubs0 amd64 0.3-2.1 [3232 B] Get:151 http://localhost/debian/ sid/main libpthread-stubs0-dev amd64 0.3-2.1 [3554 B] Get:152 http://localhost/debian/ sid/main libxcb1-dev amd64 1.7-3 [83.1 kB] Get:153 http://localhost/debian/ sid/main libx11-dev amd64 2:1.4.4-1 [3383 kB] Get:154 http://localhost/debian/ sid/main mesa-common-dev amd64 7.11-5 [342 kB] Get:155 http://localhost/debian/ sid/main x11proto-xext-dev all 7.2.0-3 [255 kB] Get:156 http://localhost/debian/ sid/main libxext-dev amd64 2:1.3.0-3 [167 kB] Get:157 http://localhost/debian/ sid/main libgl1-mesa-dev amd64 7.11-5 [31.1 kB] Get:158 http://localhost/debian/ sid/main libglu1-mesa-dev amd64 7.11-5 [295 kB] Get:159 http://localhost/debian/ sid/main libftgl-dev amd64 2.1.3~rc5-3 [903 kB] Get:160 http://localhost/debian/ sid/main libgl2ps0 amd64 1.3.6-1 [38.6 kB] Get:161 http://localhost/debian/ sid/main libgl2ps-dev amd64 1.3.6-1 [5200 B] Get:162 http://localhost/debian/ sid/main libhdf5-serial-1.8.4 amd64 1.8.4-patch1-3 [1466 kB] Get:163 http://localhost/debian/ sid/main libice-dev amd64 2:1.0.7-2 [143 kB] Get:164 http://localhost/debian/ sid/main libjpeg8 amd64 8c-2 [132 kB] Get:165 http://localhost/debian/ sid/main libjpeg8-dev amd64 8c-2 [241 kB] Get:166 http://localhost/debian/ sid/main libjs-jquery all 1.6.2-1 [107 kB] Get:167 http://localhost/debian/ sid/main libklu1.1.0 amd64 1:3.4.0-2 [109 kB] Get:168 http://localhost/debian/ sid/main liblapack-dev amd64 3.3.1-1 [4881 kB] Get:169 http://localhost/debian/ sid/main libldl2.0.1 amd64 1:3.4.0-2 [12.5 kB] Get:170 http://localhost/debian/ sid/main mysql-common all 5.1.58-1 [75.0 kB] Get:171 http://localhost/debian/ sid/main libmysqlclient16 amd64 5.1.58-1 [1983 kB] Get:172 http://localhost/debian/ sid/main libmysqlclient-dev amd64 5.1.58-1 [3255 kB] Get:173 http://localhost/debian/ sid/main libncurses5-dev amd64 5.9-1 [507 kB] Get:174 http://localhost/debian/ sid/main libnetcdf6 amd64 1:4.1.1-5 [520 kB] Get:175 http://localhost/debian/ sid/main libnetcdf-dev amd64 1:4.1.1-5 [660 kB] Get:176 http://localhost/debian/ sid/main libpaper1 amd64 1.1.24+nmu1 [21.8 kB] Get:177 http://localhost/debian/ sid/main libpaper-utils amd64 1.1.24+nmu1 [18.1 kB] Get:178 http://localhost/debian/ sid/main libpng12-dev amd64 1.2.46-3 [265 kB] Get:179 http://localhost/debian/ sid/main libpq5 amd64 9.1~rc1-3 [469 kB] Get:180 http://localhost/debian/ sid/main libssl-dev amd64 1.0.0e-2 [1631 kB] Get:181 http://localhost/debian/ sid/main libkrb5-dev amd64 1.9.1+dfsg-2 [38.4 kB] Get:182 http://localhost/debian/ sid/main libpq-dev amd64 9.1~rc1-3 [551 kB] Get:183 http://localhost/debian/ sid/main libpython2.6 amd64 2.6.7-4 [1087 kB] Get:184 http://localhost/debian/ sid/main libqtcore4 amd64 4:4.7.3-8 [2789 kB] Get:185 http://localhost/debian/ sid/main libqt4-xml amd64 4:4.7.3-8 [147 kB] Get:186 http://localhost/debian/ sid/main libqt4-dbus amd64 4:4.7.3-8 [275 kB] Get:187 http://localhost/debian/ sid/main libqt4-network amd64 4:4.7.3-8 [736 kB] Get:188 http://localhost/debian/ sid/main libqt4-script amd64 4:4.7.3-8 [1048 kB] Get:189 http://localhost/debian/ sid/main libqt4-sql amd64 4:4.7.3-8 [150 kB] Get:190 http://localhost/debian/ sid/main libqt4-xmlpatterns amd64 4:4.7.3-8 [1520 kB] Get:191 http://localhost/debian/ sid/main libtiff4 amd64 3.9.5-1 [200 kB] Get:192 http://localhost/debian/ sid/main libqtgui4 amd64 4:4.7.3-8 [5152 kB] Get:193 http://localhost/debian/ sid/main libqt4-declarative amd64 4:4.7.3-8 [1330 kB] Get:194 http://localhost/debian/ sid/main libqt4-designer amd64 4:4.7.3-8 [4530 kB] Get:195 http://localhost/debian/ sid/main libqt4-help amd64 4:4.7.3-8 [283 kB] Get:196 http://localhost/debian/ sid/main libqt4-qt3support amd64 4:4.7.3-8 [1376 kB] Get:197 http://localhost/debian/ sid/main libqt4-scripttools amd64 4:4.7.3-8 [313 kB] Get:198 http://localhost/debian/ sid/main libqt4-svg amd64 4:4.7.3-8 [211 kB] Get:199 http://localhost/debian/ sid/main libqt4-test amd64 4:4.7.3-8 [98.9 kB] Get:200 http://localhost/debian/ sid/main qt4-linguist-tools amd64 4:4.7.3-8 [1147 kB] Get:201 http://localhost/debian/ sid/main qt4-qmake amd64 4:4.7.3-8 [1635 kB] Get:202 http://localhost/debian/ sid/main libqt4-dev amd64 4:4.7.3-8 [4359 kB] Get:203 http://localhost/debian/ sid/main libqt4-opengl amd64 4:4.7.3-8 [388 kB] Get:204 http://localhost/debian/ sid/main libqt4-opengl-dev amd64 4:4.7.3-8 [56.7 kB] Get:205 http://localhost/debian/ sid/main libqwt5-qt4 amd64 5.2.2-1 [320 kB] Get:206 http://localhost/debian/ sid/main libqwt5-qt4-dev amd64 5.2.2-1 [106 kB] Get:207 http://localhost/debian/ sid/main libreadline6-dev amd64 6.2-4 [263 kB] Get:208 http://localhost/debian/ sid/main libreadline-dev amd64 6.2-4 [892 B] Get:209 http://localhost/debian/ sid/main libsm-dev amd64 2:1.2.0-2 [101 kB] Get:210 http://localhost/debian/ sid/main libumfpack5.4.0 amd64 1:3.4.0-2 [388 kB] Get:211 http://localhost/debian/ sid/main libsuitesparse-dev amd64 1:3.4.0-2 [1578 kB] Get:212 http://localhost/debian/ sid/main libsuperlu3 amd64 3.0+20070106-3 [170 kB] Get:213 http://localhost/debian/ sid/main libsuperlu3-dev amd64 3.0+20070106-3 [573 kB] Get:214 http://localhost/debian/ sid/main libswscale2 amd64 4:0.7.1-5 [120 kB] Get:215 http://localhost/debian/ sid/main libswscale-dev amd64 4:0.7.1-5 [137 kB] Get:216 http://localhost/debian/ sid/main libtiffxx0c2 amd64 3.9.5-1 [61.7 kB] Get:217 http://localhost/debian/ sid/main libtiff4-dev amd64 3.9.5-1 [334 kB] Get:218 http://localhost/debian/ sid/main libvtk5.6 amd64 5.6.1-6.1 [14.0 MB] Get:219 http://localhost/debian/ sid/main libxt-dev amd64 1:1.1.1-2 [512 kB] Get:220 http://localhost/debian/ sid/main x11proto-scrnsaver-dev all 1.2.1-1 [22.2 kB] Get:221 http://localhost/debian/ sid/main libxss-dev amd64 1:1.2.1-2 [22.3 kB] Get:222 http://localhost/debian/ sid/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:223 http://localhost/debian/ sid/main libxrender-dev amd64 1:0.9.6-2 [39.7 kB] Get:224 http://localhost/debian/ sid/main libxft-dev amd64 2.2.0-3 [71.5 kB] Get:225 http://localhost/debian/ sid/main tcl8.5 amd64 8.5.10-1 [1621 kB] Get:226 http://localhost/debian/ sid/main tcl8.5-dev amd64 8.5.10-1 [1080 kB] Get:227 http://localhost/debian/ sid/main tk8.5 amd64 8.5.10-1 [1181 kB] Get:228 http://localhost/debian/ sid/main tk8.5-dev amd64 8.5.10-1 [1000 kB] Get:229 http://localhost/debian/ sid/main libxml2-dev amd64 2.7.8.dfsg-4 [854 kB] Get:230 http://localhost/debian/ sid/main openmpi-common all 1.4.3-2.1 [92.2 kB] Get:231 http://localhost/debian/ sid/main libibverbs-dev amd64 1.1.5-1 [83.9 kB] Get:232 http://localhost/debian/ sid/main libopenmpi-dev amd64 1.4.3-2.1 [2790 kB] Get:233 http://localhost/debian/ sid/main mpi-default-dev amd64 0.6 [3202 B] Get:234 http://localhost/debian/ sid/main libvtk5-dev amd64 5.6.1-6.1 [2706 kB] Get:235 http://localhost/debian/ sid/main libvtk5.6-qt4 amd64 5.6.1-6.1 [473 kB] Get:236 http://localhost/debian/ sid/main libvtk5-qt4-dev amd64 5.6.1-6.1 [114 kB] Get:237 http://localhost/debian/ sid/main python2.6-dev amd64 2.6.7-4 [4832 kB] Get:238 http://localhost/debian/ sid/main python-dev all 2.6.7-3 [914 B] Get:239 http://localhost/debian/ sid/main python-sip amd64 4.12.4-1 [153 kB] Get:240 http://localhost/debian/ sid/main python-sip-dev amd64 4.12.4-1 [397 kB] Get:241 http://localhost/debian/ sid/main python-qt4-dev all 4.8.3-4 [242 kB] Get:242 http://localhost/debian/ sid/main quilt all 0.48-7 [354 kB] Get:243 http://localhost/debian/ sid/main zip amd64 3.0-4 [334 kB] Get:244 http://localhost/debian/ sid/main unzip amd64 6.0-5 [192 kB] Get:245 http://localhost/debian/ sid/main xdg-utils all 1.1.0~rc1-2 [70.2 kB] Get:246 http://localhost/debian/ sid/main r-base-core amd64 2.13.1-1 [15.2 MB] Get:247 http://localhost/debian/ sid/main tcl8.4 amd64 8.4.19-4 [1206 kB] Get:248 http://localhost/debian/ sid/main tcl8.4-dev amd64 8.4.19-4 [829 kB] Get:249 http://localhost/debian/ sid/main tk8.4 amd64 8.4.19-4 [1053 kB] Get:250 http://localhost/debian/ sid/main tk8.4-dev amd64 8.4.19-4 [880 kB] Get:251 http://localhost/debian/ sid/main libarpack2-dev amd64 2.1+parpack96.dfsg-3+b1 [719 kB] Get:252 http://localhost/debian/ sid/main openmpi-bin amd64 1.4.3-2.1 [166 kB] Get:253 http://localhost/debian/ sid/main mpi-default-bin amd64 0.6 [2610 B] Get:254 http://localhost/debian/ sid/main libblacs-mpi1 amd64 1.1-30.1 [65.8 kB] Get:255 http://localhost/debian/ sid/main libblacs-mpi-dev amd64 1.1-30.1 [76.2 kB] Get:256 http://localhost/debian/ sid/main libhypre-2.4.0 amd64 2.4.0b-7 [1752 kB] Get:257 http://localhost/debian/ sid/main libhypre-dev all 2.4.0b-7 [160 kB] Get:258 http://localhost/debian/ sid/main libscalapack-mpi1 amd64 1.8.0-6+b1 [3312 kB] Get:259 http://localhost/debian/ sid/main libmumps-4.9.2 amd64 4.9.2.dfsg-7 [2167 kB] Get:260 http://localhost/debian/ sid/main libscalapack-mpi-dev amd64 1.8.0-6+b1 [3577 kB] Get:261 http://localhost/debian/ sid/main libmumps-dev amd64 4.9.2.dfsg-7 [2322 kB] Get:262 http://localhost/debian/ sid/main libscotch-5.1 amd64 5.1.11.dfsg-7 [788 kB] Get:263 http://localhost/debian/ sid/main libmumps-scotch-4.9.2 amd64 4.9.2.dfsg-7 [2178 kB] Get:264 http://localhost/debian/ sid/main libmumps-scotch-dev amd64 4.9.2.dfsg-7 [2320 kB] Get:265 http://localhost/debian/ sid/main libopencascade-foundation-6.5.0 amd64 6.5.0.dfsg-2 [1584 kB] Get:266 http://localhost/debian/ sid/main libopencascade-foundation-dev all 6.5.0.dfsg-2 [1204 kB] Get:267 http://localhost/debian/ sid/main libopencascade-modeling-6.5.0 amd64 6.5.0.dfsg-2 [15.1 MB] Get:268 http://localhost/debian/ sid/main libopencascade-modeling-dev all 6.5.0.dfsg-2 [3486 kB] Get:269 http://localhost/debian/ sid/main libscotch-dev amd64 5.1.11.dfsg-7 [968 kB] Get:270 http://localhost/debian/ sid/main libscotchmetis-dev amd64 5.1.11.dfsg-7 [30.2 kB] Extracting templates from packages: 11% Extracting templates from packages: 22% Extracting templates from packages: 33% Extracting templates from packages: 44% Extracting templates from packages: 55% Extracting templates from packages: 66% Extracting templates from packages: 77% Extracting templates from packages: 88% Extracting templates from packages: 99% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 207 MB in 3s (62.6 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libssl1.0.0. Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0e-2_amd64.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.10-1_amd64.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... Selecting previously deselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.4-2_amd64.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.9-4_amd64.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.12.10-1_amd64.deb) ... 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Unpacking sbuild-build-depends-elmerfem-dummy (from .../sbuild-build-depends-elmerfem-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libssl1.0.0 (1.0.0e-2) ... Setting up libgpg-error0 (1.10-1) ... Setting up libgcrypt11 (1.5.0-3) ... Setting up libp11-kit0 (0.4-2) ... Setting up libtasn1-3 (2.9-4) ... Setting up libgnutls26 (2.12.10-1) ... Setting up libkeyutils1 (1.5.2-2) ... Setting up libkrb5support0 (1.9.1+dfsg-2) ... Setting up libk5crypto3 (1.9.1+dfsg-2) ... Setting up libkrb5-3 (1.9.1+dfsg-2) ... Setting up libgssapi-krb5-2 (1.9.1+dfsg-2) ... Setting up libgssrpc4 (1.9.1+dfsg-2) ... Setting up libidn11 (1.22-3) ... Setting up libkadm5clnt-mit8 (1.9.1+dfsg-2) ... Setting up libkdb5-5 (1.9.1+dfsg-2) ... Setting up libkadm5srv-mit8 (1.9.1+dfsg-2) ... Setting up libsasl2-2 (2.1.24~rc1.dfsg1+cvs2011-05-23-6) ... Setting up libldap-2.4-2 (2.4.25-3) ... Setting up libpcre3 (8.12-4) ... Setting up libxau6 (1:1.0.6-3) ... Setting up x11-common (1:7.6+8) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxdmcp6 (1:1.1.0-3) ... Setting up libxcb1 (1.7-3) ... Setting up libx11-data (2:1.4.4-1) ... Setting up libx11-6 (2:1.4.4-1) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libaudio2 (1.9.2-9) ... Setting up librtmp0 (2.4~20110711.gitc28f1bab-1) ... Setting up openssl (1.0.0e-2) ... Setting up ca-certificates (20110502+nmu1) ... Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate certificate ca-certificates.crt WARNING: Skipping duplicate certificate ca-certificates.crt WARNING: Skipping duplicate certificate spi-cacert-2008.pem WARNING: Skipping duplicate certificate spi-cacert-2008.pem WARNING: Skipping duplicate certificate spi-ca-2003.pem WARNING: Skipping duplicate certificate spi-ca-2003.pem WARNING: Skipping duplicate certificate signet_tsa1_pem.pem WARNING: Skipping duplicate certificate signet_tsa1_pem.pem WARNING: Skipping duplicate certificate signet_rootca_pem.pem WARNING: Skipping duplicate certificate signet_rootca_pem.pem WARNING: Skipping duplicate certificate signet_pca3_pem.pem WARNING: Skipping duplicate certificate signet_pca3_pem.pem WARNING: Skipping duplicate certificate signet_pca2_pem.pem WARNING: Skipping duplicate certificate signet_pca2_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa3_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa3_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa2_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa2_pem.pem WARNING: Skipping duplicate certificate signet_ca3_pem.pem WARNING: Skipping duplicate certificate signet_ca3_pem.pem WARNING: Skipping duplicate certificate signet_ca2_pem.pem WARNING: Skipping duplicate certificate signet_ca2_pem.pem WARNING: Skipping duplicate certificate signet_ca1_pem.pem WARNING: Skipping duplicate certificate signet_ca1_pem.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G3.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G3.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G2.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA_-_G2.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA.pem WARNING: Skipping duplicate certificate thawte_Primary_Root_CA.pem WARNING: Skipping duplicate certificate ePKI_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate ePKI_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate certSIGN_ROOT_CA.pem WARNING: Skipping duplicate certificate certSIGN_ROOT_CA.pem WARNING: Skipping duplicate certificate XRamp_Global_CA_Root.pem WARNING: Skipping duplicate certificate XRamp_Global_CA_Root.pem WARNING: Skipping duplicate certificate Wells_Fargo_Root_CA.pem WARNING: Skipping duplicate certificate Wells_Fargo_Root_CA.pem WARNING: Skipping duplicate certificate WellsSecure_Public_Root_Certificate_Authority.pem WARNING: Skipping duplicate certificate WellsSecure_Public_Root_Certificate_Authority.pem WARNING: Skipping duplicate certificate Visa_eCommerce_Root.pem WARNING: Skipping duplicate certificate Visa_eCommerce_Root.pem WARNING: Skipping duplicate certificate Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_3_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_3_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_2_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate Verisign_Class_1_Public_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate VeriSign_Universal_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate VeriSign_Universal_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem WARNING: Skipping duplicate certificate VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem WARNING: Skipping duplicate certificate ValiCert_Class_2_VA.pem WARNING: Skipping duplicate certificate ValiCert_Class_2_VA.pem WARNING: Skipping duplicate certificate ValiCert_Class_1_VA.pem WARNING: Skipping duplicate certificate ValiCert_Class_1_VA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Hardware_Root_CA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Hardware_Root_CA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Email_Root_CA.pem WARNING: Skipping duplicate certificate UTN_USERFirst_Email_Root_CA.pem WARNING: Skipping duplicate certificate UTN_DATACorp_SGC_Root_CA.pem WARNING: Skipping duplicate certificate UTN_DATACorp_SGC_Root_CA.pem WARNING: Skipping duplicate certificate TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem WARNING: Skipping duplicate certificate TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem WARNING: Skipping duplicate certificate Thawte_Time_Stamping_CA.pem WARNING: Skipping duplicate certificate Thawte_Time_Stamping_CA.pem WARNING: Skipping duplicate certificate Thawte_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Premium_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Premium_Server_CA.pem WARNING: Skipping duplicate certificate Thawte_Personal_Freemail_CA.pem WARNING: Skipping duplicate certificate Thawte_Personal_Freemail_CA.pem WARNING: Skipping duplicate certificate Taiwan_GRCA.pem WARNING: Skipping duplicate certificate Taiwan_GRCA.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_2.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_2.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_1.pem WARNING: Skipping duplicate certificate TURKTRUST_Certificate_Services_Provider_Root_1.pem WARNING: Skipping duplicate certificate TDC_OCES_Root_CA.pem WARNING: Skipping duplicate certificate TDC_OCES_Root_CA.pem WARNING: Skipping duplicate certificate TDC_Internet_Root_CA.pem WARNING: Skipping duplicate certificate TDC_Internet_Root_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter__Germany__Class_3_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter__Germany__Class_3_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter__Germany__Class_2_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter__Germany__Class_2_CA.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Universal_CA_III.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Universal_CA_III.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Universal_CA_I.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Universal_CA_I.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Class_3_CA_II.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Class_3_CA_II.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Class_2_CA_II.pem WARNING: Skipping duplicate certificate TC_TrustCenter_Class_2_CA_II.pem WARNING: Skipping duplicate certificate Swisscom_Root_CA_1.pem WARNING: Skipping duplicate certificate Swisscom_Root_CA_1.pem WARNING: Skipping duplicate certificate SwissSign_Silver_CA_-_G2.pem WARNING: Skipping duplicate certificate SwissSign_Silver_CA_-_G2.pem WARNING: Skipping duplicate certificate SwissSign_Platinum_CA_-_G2.pem WARNING: Skipping duplicate certificate SwissSign_Platinum_CA_-_G2.pem WARNING: Skipping duplicate certificate SwissSign_Gold_CA_-_G2.pem WARNING: Skipping duplicate certificate SwissSign_Gold_CA_-_G2.pem WARNING: Skipping duplicate certificate StartCom_Certification_Authority.pem WARNING: Skipping duplicate certificate StartCom_Certification_Authority.pem WARNING: Skipping duplicate certificate Starfield_Class_2_CA.pem WARNING: Skipping duplicate certificate Starfield_Class_2_CA.pem WARNING: Skipping duplicate certificate Staat_der_Nederlanden_Root_CA_-_G2.pem WARNING: Skipping duplicate certificate Staat_der_Nederlanden_Root_CA_-_G2.pem WARNING: Skipping duplicate certificate Staat_der_Nederlanden_Root_CA.pem WARNING: Skipping duplicate certificate Staat_der_Nederlanden_Root_CA.pem WARNING: Skipping duplicate certificate Sonera_Class_2_Root_CA.pem WARNING: Skipping duplicate certificate Sonera_Class_2_Root_CA.pem WARNING: Skipping duplicate certificate Sonera_Class_1_Root_CA.pem WARNING: Skipping duplicate certificate Sonera_Class_1_Root_CA.pem WARNING: Skipping duplicate certificate Security_Communication_Root_CA.pem WARNING: Skipping duplicate certificate Security_Communication_Root_CA.pem WARNING: Skipping duplicate certificate Security_Communication_EV_RootCA1.pem WARNING: Skipping duplicate certificate Security_Communication_EV_RootCA1.pem WARNING: Skipping duplicate certificate Secure_Global_CA.pem WARNING: Skipping duplicate certificate Secure_Global_CA.pem WARNING: Skipping duplicate certificate SecureTrust_CA.pem WARNING: Skipping duplicate certificate SecureTrust_CA.pem WARNING: Skipping duplicate certificate SecureSign_RootCA11.pem WARNING: Skipping duplicate certificate SecureSign_RootCA11.pem WARNING: Skipping duplicate certificate S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem WARNING: Skipping duplicate certificate S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem WARNING: Skipping duplicate certificate RSA_Security_2048_v3.pem WARNING: Skipping duplicate certificate RSA_Security_2048_v3.pem WARNING: Skipping duplicate certificate RSA_Root_Certificate_1.pem WARNING: Skipping duplicate certificate RSA_Root_Certificate_1.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_3.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_3.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_2.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA_2.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA.pem WARNING: Skipping duplicate certificate QuoVadis_Root_CA.pem WARNING: Skipping duplicate certificate OISTE_WISeKey_Global_Root_GA_CA.pem WARNING: Skipping duplicate certificate OISTE_WISeKey_Global_Root_GA_CA.pem WARNING: Skipping duplicate certificate Network_Solutions_Certificate_Authority.pem WARNING: Skipping duplicate certificate Network_Solutions_Certificate_Authority.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libcurl3-gnutls (7.21.7-2) ... Setting up libdatrie1 (0.2.4-3) ... Setting up libdbus-1-3 (1.4.14-1) ... Setting up libdrm2 (2.4.26-1) ... Setting up libexpat1 (2.0.1-7) ... Setting up libfreetype6 (2.4.6-2) ... Setting up ucf (3.0025+nmu2) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3) ... Setting up libfontconfig1 (2.8.0-3) ... Setting up libgfortran3 (4.6.1-10) ... Setting up libglapi-mesa (7.11-5) ... Setting up libxfixes3 (1:5.0-4) ... Setting up libxdamage1 (1:1.1.3-2) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxxf86vm1 (1:1.1.1-2) ... Setting up libgl1-mesa-glx (7.11-5) ... Setting up libglu1-mesa (7.11-5) ... Setting up libjpeg62 (6b1-2) ... Setting up liblcms1 (1.19.dfsg-1) ... Setting up libmng1 (1.0.10-2) ... Setting up libmp3lame0 (3.98.4+repack2-6) ... Setting up libpixman-1-0 (0.22.2-1) ... Setting up libpng12-0 (1.2.46-3) ... Setting up libxcb-render0 (1.7-3) ... Setting up libxcb-shm0 (1.7-3) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libcairo2 (1.10.2-6.1) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libthai-data (0.1.15-2) ... Setting up libthai0 (0.1.15-2) ... Setting up libxft2 (2.2.0-3) ... Setting up fontconfig (2.8.0-3) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0 (1.28.4-3) ... Setting up libxss1 (1:1.2.1-2) ... Setting up libdb4.8 (4.8.30-9) ... Setting up adduser (3.113) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up libpopt0 (1.16-1) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libsqlite3-0 (3.7.7-2) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up m4 (1.4.16-2) ... Setting up mime-support (3.51-1) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up python2.6 (2.6.7-4) ... Setting up python-minimal (2.6.7-3) ... Setting up python (2.6.7-3) ... Setting up autoconf (2.68-1) ... Setting up autotools-dev (20110511.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up diffstat (1.54-1) ... Setting up gfortran-4.6 (4.6.1-10) ... Setting up gfortran (4:4.6.1-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up comerr-dev (2.1-1.42~WIP-2011-07-02-1) ... Setting up krb5-multidev (1.9.1+dfsg-2) ... Setting up libamd2.2.0 (1:3.4.0-2) ... Setting up libblas3gf (1.2.20110419-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up liblapack3gf (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libibverbs1 (1.1.5-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.3-2.1) ... Setting up libarpack2 (2.1+parpack96.dfsg-3+b1) ... Setting up libavutil51 (4:0.7.1-5) ... Setting up libdirac-encoder0 (1.0.2-4) ... Setting up libgsm1 (1.0.13-3) ... Setting up libopenjpeg2 (1.3+dfsg-4) ... Setting up liborc-0.4-0 (1:0.4.14-1) ... Setting up libschroedinger-1.0-0 (1.0.10-2.1) ... Setting up libspeex1 (1.2~rc1-1) ... Setting up libogg0 (1.2.2~dfsg-1) ... Setting up libtheora0 (1.1.1+dfsg.1-3) ... Setting up libva1 (1.0.12-2) ... Setting up libvorbis0a (1.3.2-1) ... Setting up libvorbisenc2 (1.3.2-1) ... Setting up libvpx0 (0.9.7.p1-1) ... Setting up libx264-116 (2:0.116.2042+git178455c-1+b1) ... Setting up libxvidcore4 (2:1.3.2-5) ... Setting up libavcodec53 (4:0.7.1-5) ... Setting up libavutil-dev (4:0.7.1-5) ... Setting up libavcodec-dev (4:0.7.1-5) ... Setting up libavformat53 (4:0.7.1-5) ... Setting up libavformat-dev (4:0.7.1-5) ... Setting up libblas-dev (1.2.20110419-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbtf1.1.0 (1:3.4.0-2) ... Setting up libcamd2.2.0 (1:3.4.0-2) ... Setting up libccolamd2.7.1 (1:3.4.0-2) ... Setting up libcolamd2.7.1 (1:3.4.0-2) ... Setting up libcholmod1.7.1 (1:3.4.0-2) ... Setting up libcsparse2.2.3 (1:3.4.0-2) ... Setting up libcxsparse2.2.3 (1:3.4.0-2) ... Setting up libexpat1-dev (2.0.1-7) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up libfreetype6-dev (2.4.6-2) ... Setting up pkg-config (0.26-1) ... Setting up libfontconfig1-dev (2.8.0-3) ... Setting up libftgl2 (2.1.3~rc5-3) ... Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-3) ... Setting up libxdmcp-dev (1:1.1.0-3) ... Setting up x11proto-input-dev (2.0.2-2) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-2.1) ... Setting up libpthread-stubs0-dev (0.3-2.1) ... Setting up libxcb1-dev (1.7-3) ... Setting up libx11-dev (2:1.4.4-1) ... Setting up mesa-common-dev (7.11-5) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up libgl1-mesa-dev (7.11-5) ... Setting up libglu1-mesa-dev (7.11-5) ... Setting up libftgl-dev (2.1.3~rc5-3) ... Setting up libgl2ps0 (1.3.6-1) ... Setting up libgl2ps-dev (1.3.6-1) ... Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-3) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libjpeg8 (8c-2) ... Setting up libjpeg8-dev (8c-2) ... Setting up libjs-jquery (1.6.2-1) ... Setting up libklu1.1.0 (1:3.4.0-2) ... Setting up liblapack-dev (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libldl2.0.1 (1:3.4.0-2) ... Setting up mysql-common (5.1.58-1) ... Setting up libmysqlclient16 (5.1.58-1) ... Setting up libmysqlclient-dev (5.1.58-1) ... Setting up libncurses5-dev (5.9-1) ... Setting up libnetcdf6 (1:4.1.1-5) ... Setting up libnetcdf-dev (1:4.1.1-5) ... Setting up libpaper1 (1.1.24+nmu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu1) ... Setting up libpng12-dev (1.2.46-3) ... Setting up libpq5 (9.1~rc1-3) ... Setting up libssl-dev (1.0.0e-2) ... Setting up libkrb5-dev (1.9.1+dfsg-2) ... Setting up libpq-dev (9.1~rc1-3) ... Setting up libpython2.6 (2.6.7-4) ... Setting up libqtcore4 (4:4.7.3-8) ... Setting up libqt4-xml (4:4.7.3-8) ... Setting up libqt4-dbus (4:4.7.3-8) ... Setting up libqt4-network (4:4.7.3-8) ... Setting up libqt4-script (4:4.7.3-8) ... Setting up libqt4-sql (4:4.7.3-8) ... Setting up libqt4-xmlpatterns (4:4.7.3-8) ... Setting up libtiff4 (3.9.5-1) ... Setting up libqtgui4 (4:4.7.3-8) ... Setting up libqt4-declarative (4:4.7.3-8) ... Setting up libqt4-designer (4:4.7.3-8) ... Setting up libqt4-help (4:4.7.3-8) ... Setting up libqt4-qt3support (4:4.7.3-8) ... Setting up libqt4-scripttools (4:4.7.3-8) ... Setting up libqt4-svg (4:4.7.3-8) ... Setting up libqt4-test (4:4.7.3-8) ... Setting up qt4-linguist-tools (4:4.7.3-8) ... update-alternatives: using /usr/bin/lupdate-qt4 to provide /usr/bin/lupdate (lupdate) in auto mode. update-alternatives: using /usr/bin/lrelease-qt4 to provide /usr/bin/lrelease (lrelease) in auto mode. Setting up qt4-qmake (4:4.7.3-8) ... update-alternatives: using /usr/bin/qmake-qt4 to provide /usr/bin/qmake (qmake) in auto mode. Setting up libqt4-dev (4:4.7.3-8) ... update-alternatives: using /usr/bin/moc-qt4 to provide /usr/bin/moc (moc) in auto mode. update-alternatives: using /usr/bin/uic-qt4 to provide /usr/bin/uic (uic) in auto mode. update-alternatives: warning: skip creation of /usr/share/man/man1/uic.1.gz because associated file /usr/share/man/man1/uic-qt4.1.gz (of link group uic) doesn't exist. Setting up libqt4-opengl (4:4.7.3-8) ... Setting up libqt4-opengl-dev (4:4.7.3-8) ... Setting up libqwt5-qt4 (5.2.2-1) ... Setting up libqwt5-qt4-dev (5.2.2-1) ... Setting up libreadline6-dev (6.2-4) ... Setting up libreadline-dev (6.2-4) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libumfpack5.4.0 (1:3.4.0-2) ... Setting up libsuitesparse-dev (1:3.4.0-2) ... Setting up libsuperlu3 (3.0+20070106-3) ... Setting up libsuperlu3-dev (3.0+20070106-3) ... Setting up libswscale2 (4:0.7.1-5) ... Setting up libswscale-dev (4:0.7.1-5) ... Setting up libtiffxx0c2 (3.9.5-1) ... Setting up libtiff4-dev (3.9.5-1) ... Setting up libvtk5.6 (5.6.1-6.1) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-scrnsaver-dev (1.2.1-1) ... Setting up libxss-dev (1:1.2.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libxft-dev (2.2.0-3) ... Setting up tcl8.5 (8.5.10-1) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tcl8.5-dev (8.5.10-1) ... Setting up tk8.5 (8.5.10-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up tk8.5-dev (8.5.10-1) ... Setting up libxml2-dev (2.7.8.dfsg-4) ... Setting up openmpi-common (1.4.3-2.1) ... Setting up libibverbs-dev (1.1.5-1) ... Setting up libopenmpi-dev (1.4.3-2.1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up mpi-default-dev (0.6) ... Setting up libvtk5-dev (5.6.1-6.1) ... Setting up libvtk5.6-qt4 (5.6.1-6.1) ... Setting up libvtk5-qt4-dev (5.6.1-6.1) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-dev (2.6.7-3) ... Setting up python-sip (4.12.4-1) ... Setting up python-sip-dev (4.12.4-1) ... Setting up python-qt4-dev (4.8.3-4) ... Setting up quilt (0.48-7) ... Setting up zip (3.0-4) ... Setting up unzip (6.0-5) ... Setting up xdg-utils (1.1.0~rc1-2) ... Setting up r-base-core (2.13.1-1) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up tcl8.4 (8.4.19-4) ... Setting up tcl8.4-dev (8.4.19-4) ... Setting up tk8.4 (8.4.19-4) ... Setting up tk8.4-dev (8.4.19-4) ... Setting up libarpack2-dev (2.1+parpack96.dfsg-3+b1) ... Setting up openmpi-bin (1.4.3-2.1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up mpi-default-bin (0.6) ... Setting up libblacs-mpi1 (1.1-30.1) ... Setting up libblacs-mpi-dev (1.1-30.1) ... Setting up libhypre-2.4.0 (2.4.0b-7) ... Setting up libhypre-dev (2.4.0b-7) ... Setting up libscalapack-mpi1 (1.8.0-6+b1) ... Setting up libmumps-4.9.2 (4.9.2.dfsg-7) ... Setting up libscalapack-mpi-dev (1.8.0-6+b1) ... Setting up libmumps-dev (4.9.2.dfsg-7) ... Setting up libscotch-5.1 (5.1.11.dfsg-7) ... Setting up libmumps-scotch-4.9.2 (4.9.2.dfsg-7) ... Setting up libmumps-scotch-dev (4.9.2.dfsg-7) ... Setting up libopencascade-foundation-6.5.0 (6.5.0.dfsg-2) ... Setting up libopencascade-foundation-dev (6.5.0.dfsg-2) ... Setting up libopencascade-modeling-6.5.0 (6.5.0.dfsg-2) ... Setting up libopencascade-modeling-dev (6.5.0.dfsg-2) ... Setting up libscotch-dev (5.1.11.dfsg-7) ... Setting up libscotchmetis-dev (5.1.11.dfsg-7) ... Setting up sbuild-build-depends-elmerfem-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: adduser_3.113 apt_0.8.15.6 apt-utils_0.8.15.6 autoconf_2.68-1 automake_1:1.11.1-1 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 clang_2.9-11 comerr-dev_2.1-1.42~WIP-2011-07-02-1 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffstat_1.54-1 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 krb5-multidev_1.9.1+dfsg-2 less_444-1 libacl1_2.2.51-3 libamd2.2.0_1:3.4.0-2 libarpack2_2.1+parpack96.dfsg-3+b1 libarpack2-dev_2.1+parpack96.dfsg-3+b1 libattr1_1:2.4.46-3 libaudio2_1.9.2-9 libavcodec-dev_4:0.7.1-5 libavcodec53_4:0.7.1-5 libavformat-dev_4:0.7.1-5 libavformat53_4:0.7.1-5 libavutil-dev_4:0.7.1-5 libavutil51_4:0.7.1-5 libblacs-mpi-dev_1.1-30.1 libblacs-mpi1_1.1-30.1 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbtf1.1.0_1:3.4.0-2 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcairo2_1.10.2-6.1 libcamd2.2.0_1:3.4.0-2 libccolamd2.7.1_1:3.4.0-2 libcholmod1.7.1_1:3.4.0-2 libcolamd2.7.1_1:3.4.0-2 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libcsparse2.2.3_1:3.4.0-2 libcurl3-gnutls_7.21.7-2 libcxsparse2.2.3_1:3.4.0-2 libdatrie1_0.2.4-3 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdbus-1-3_1.4.14-1 libdirac-encoder0_1.0.2-4 libdpkg-perl_1.16.0.3 libdrm2_2.4.26-1 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libffi5_3.0.10~rc10-3 libfontconfig1_2.8.0-3 libfontconfig1-dev_2.8.0-3 libfreetype6_2.4.6-2 libfreetype6-dev_2.4.6-2 libftgl-dev_2.1.3~rc5-3 libftgl2_2.1.3~rc5-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-10 libgl1-mesa-dev_7.11-5 libgl1-mesa-glx_7.11-5 libgl2ps-dev_1.3.6-1 libgl2ps0_1.3.6-1 libglapi-mesa_7.11-5 libglib2.0-0_2.28.6-1 libglu1-mesa_7.11-5 libglu1-mesa-dev_7.11-5 libgmp10_2:5.0.2+dfsg-1 libgnutls26_2.12.10-1 libgomp1_4.6.1-10 libgpg-error0_1.10-1 libgsm1_1.0.13-3 libgssapi-krb5-2_1.9.1+dfsg-2 libgssrpc4_1.9.1+dfsg-2 libhdf5-serial-1.8.4_1.8.4-patch1-3 libhypre-2.4.0_2.4.0b-7 libhypre-dev_2.4.0b-7 libibverbs-dev_1.1.5-1 libibverbs1_1.1.5-1 libice-dev_2:1.0.7-2 libice6_2:1.0.7-2 libidn11_1.22-3 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libjs-jquery_1.6.2-1 libk5crypto3_1.9.1+dfsg-2 libkadm5clnt-mit8_1.9.1+dfsg-2 libkadm5srv-mit8_1.9.1+dfsg-2 libkdb5-5_1.9.1+dfsg-2 libkeyutils1_1.5.2-2 libklu1.1.0_1:3.4.0-2 libkrb5-3_1.9.1+dfsg-2 libkrb5-dev_1.9.1+dfsg-2 libkrb5support0_1.9.1+dfsg-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblcms1_1.19.dfsg-1 libldap-2.4-2_2.4.25-3 libldl2.0.1_1:3.4.0-2 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmng1_1.0.10-2 libmount1_2.19.1-5 libmp3lame0_3.98.4+repack2-6 libmpc2_0.9-3 libmpfr4_3.0.1-6 libmumps-4.9.2_4.9.2.dfsg-7 libmumps-dev_4.9.2.dfsg-7 libmumps-scotch-4.9.2_4.9.2.dfsg-7 libmumps-scotch-dev_4.9.2.dfsg-7 libmysqlclient-dev_5.1.58-1 libmysqlclient16_5.1.58-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libnetcdf-dev_1:4.1.1-5 libnetcdf6_1:4.1.1-5 libnuma1_2.0.5-1 libogg0_1.2.2~dfsg-1 libopencascade-foundation-6.5.0_6.5.0.dfsg-2 libopencascade-foundation-dev_6.5.0.dfsg-2 libopencascade-modeling-6.5.0_6.5.0.dfsg-2 libopencascade-modeling-dev_6.5.0.dfsg-2 libopenjpeg2_1.3+dfsg-4 libopenmpi-dev_1.4.3-2.1 libopenmpi1.3_1.4.3-2.1 liborc-0.4-0_1:0.4.14-1 libp11-kit0_0.4-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-3 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libpq-dev_9.1~rc1-3 libpq5_9.1~rc1-3 libpthread-stubs0_0.3-2.1 libpthread-stubs0-dev_0.3-2.1 libpython2.6_2.6.7-4 libqt4-dbus_4:4.7.3-8 libqt4-declarative_4:4.7.3-8 libqt4-designer_4:4.7.3-8 libqt4-dev_4:4.7.3-8 libqt4-help_4:4.7.3-8 libqt4-network_4:4.7.3-8 libqt4-opengl_4:4.7.3-8 libqt4-opengl-dev_4:4.7.3-8 libqt4-qt3support_4:4.7.3-8 libqt4-script_4:4.7.3-8 libqt4-scripttools_4:4.7.3-8 libqt4-sql_4:4.7.3-8 libqt4-svg_4:4.7.3-8 libqt4-test_4:4.7.3-8 libqt4-xml_4:4.7.3-8 libqt4-xmlpatterns_4:4.7.3-8 libqtcore4_4:4.7.3-8 libqtgui4_4:4.7.3-8 libquadmath0_4.6.1-10 libqwt5-qt4_5.2.2-1 libqwt5-qt4-dev_5.2.2-1 libreadline-dev_6.2-4 libreadline6_6.2-4 libreadline6-dev_6.2-4 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libscalapack-mpi-dev_1.8.0-6+b1 libscalapack-mpi1_1.8.0-6+b1 libschroedinger-1.0-0_1.0.10-2.1 libscotch-5.1_5.1.11.dfsg-7 libscotch-dev_5.1.11.dfsg-7 libscotchmetis-dev_5.1.11.dfsg-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm-dev_2:1.2.0-2 libsm6_2:1.2.0-2 libspeex1_1.2~rc1-1 libsqlite3-0_3.7.7-2 libss2_1.42~WIP-2011-07-02-1 libssl-dev_1.0.0e-2 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libsuitesparse-dev_1:3.4.0-2 libsuperlu3_3.0+20070106-3 libsuperlu3-dev_3.0+20070106-3 libswscale-dev_4:0.7.1-5 libswscale2_4:0.7.1-5 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtheora0_1.1.1+dfsg.1-3 libtiff4_3.9.5-1 libtiff4-dev_3.9.5-1 libtiffxx0c2_3.9.5-1 libtimedate-perl_1.2000-1 libtorque2_2.4.16+dfsg-1 libumfpack5.4.0_1:3.4.0-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libva1_1.0.12-2 libvorbis0a_1.3.2-1 libvorbisenc2_1.3.2-1 libvpx0_0.9.7.p1-1 libvtk5-dev_5.6.1-6.1 libvtk5-qt4-dev_5.6.1-6.1 libvtk5.6_5.6.1-6.1 libvtk5.6-qt4_5.6.1-6.1 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libx11-dev_2:1.4.4-1 libx264-116_2:0.116.2042+git178455c-1+b1 libxau-dev_1:1.0.6-3 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcb1-dev_1.7-3 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.0-3 libxdmcp6_1:1.1.0-3 libxext-dev_2:1.3.0-3 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft-dev_2.2.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxml2-dev_2.7.8.dfsg-4 libxrender-dev_1:0.9.6-2 libxrender1_1:0.9.6-2 libxss-dev_1:1.2.1-2 libxss1_1:1.2.1-2 libxt-dev_1:1.1.1-2 libxt6_1:1.1.1-2 libxvidcore4_2:1.3.2-5 libxxf86vm1_1:1.1.1-2 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 m4_1.4.16-2 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mesa-common-dev_7.11-5 mime-support_3.51-1 mount_2.19.1-5 mpi-default-bin_0.6 mpi-default-dev_0.6 multiarch-support_2.13-20 mysql-common_5.1.58-1 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 openmpi-bin_1.4.3-2.1 openmpi-common_1.4.3-2.1 openssl_1.0.0e-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 python_2.6.7-3 python-dev_2.6.7-3 python-minimal_2.6.7-3 python-qt4-dev_4.8.3-4 python-sip_4.12.4-1 python-sip-dev_4.12.4-1 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 qt4-linguist-tools_4:4.7.3-8 qt4-qmake_4:4.7.3-8 quilt_0.48-7 r-base-core_2.13.1-1 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-elmerfem-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.4_8.4.19-4 tcl8.4-dev_8.4.19-4 tcl8.5_8.5.10-1 tcl8.5-dev_8.5.10-1 tk8.4_8.4.19-4 tk8.4-dev_8.4.19-4 tk8.5_8.5.10-1 tk8.5-dev_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011i-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+8 x11proto-core-dev_7.0.22-1 x11proto-input-dev_2.0.2-2 x11proto-kb-dev_1.0.5-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.1-1 x11proto-xext-dev_7.2.0-3 xdg-utils_1.1.0~rc1-2 xorg-sgml-doctools_1:1.8-2 xtrans-dev_1.2.6-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Jul 29 18:16:41 2011 CEST using DSA key ID 564EE4B6 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./elmerfem_6.1.0.svn.5272.dfsg-1.dsc dpkg-source: info: extracting elmerfem in elmerfem-6.1.0.svn.5272.dfsg dpkg-source: info: unpacking elmerfem_6.1.0.svn.5272.dfsg.orig.tar.bz2 dpkg-source: info: unpacking elmerfem_6.1.0.svn.5272.dfsg-1.debian.tar.gz dpkg-source: info: applying banish-rpath.patch dpkg-source: info: applying no-metis-partmesh.patch dpkg-source: info: applying ElmerGUI-config.patch dpkg-source: info: applying node-partition.patch dpkg-source: info: applying no-avcore.patch dpkg-source: info: applying lib-link-order.patch dpkg-source: info: applying ElmerGUI-no-strip.patch dpkg-source: info: applying elmer-revision.patch Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package elmerfem dpkg-buildpackage: source version 6.1.0.svn.5272.dfsg-1 dpkg-source --before-build elmerfem-6.1.0.svn.5272.dfsg dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh_testdir for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ if [ -e $elmermodule/Makefile ]; then \ echo; echo CLEANING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule maintainer-clean; \ fi; \ done if [ -e ElmerGUI/Makefile ]; then \ make -C ElmerGUI distclean; \ fi if [ -e ElmerGUIlogger/Makefile ]; then \ make -C ElmerGUIlogger distclean; \ fi if [ -e utils/ElmerClips/Makefile ]; then \ make -C utils/ElmerClips distclean; \ fi for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do rm -f $missingfile; done for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in ElmerGUIlogger/ElmerGUIlogger.pro; do \ if [ -e $backupfile.bak ]; then \ mv -f $backupfile.bak $backupfile; \ fi; \ done rm -rf elmergrid/src/metis post/src/fonts/TrueType rm -rf ElmerGUI/PythonQt/lib ElmerGUI/matc/lib ElmerGUI/netgen/ngcore rm -f stamp-* if [ -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt pop -a && rm -rf .pc; \ fi Removing patch elmer-revision.patch Restoring fem/acx_elmer.m4 Removing patch ElmerGUI-no-strip.patch Restoring ElmerGUI/Application/Application.pro Removing patch lib-link-order.patch Restoring ElmerGUI/Application/Application.pro Removing patch no-avcore.patch Restoring utils/ElmerClips/ElmerClips.pro Removing patch node-partition.patch Restoring ElmerGUI/Application/src/parallel.cpp Removing patch ElmerGUI-config.patch Restoring ElmerGUI/ElmerGUI.pri Removing patch no-metis-partmesh.patch Restoring elmergrid/src/femelmer.c Removing patch banish-rpath.patch Restoring fem/src/Makefile.am No patches applied dh_clean dpkg-source -b elmerfem-6.1.0.svn.5272.dfsg dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: warning: patches have not been applied, applying them now (use --no-preparation to override) dpkg-source: info: applying banish-rpath.patch dpkg-source: info: applying no-metis-partmesh.patch dpkg-source: info: applying ElmerGUI-config.patch dpkg-source: info: applying node-partition.patch dpkg-source: info: applying no-avcore.patch dpkg-source: info: applying lib-link-order.patch dpkg-source: info: applying ElmerGUI-no-strip.patch dpkg-source: info: applying elmer-revision.patch dpkg-source: info: building elmerfem using existing ./elmerfem_6.1.0.svn.5272.dfsg.orig.tar.bz2 dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5272.dfsg-1.debian.tar.gz dpkg-source: info: building elmerfem in elmerfem_6.1.0.svn.5272.dfsg-1.dsc debian/rules build if [ ! -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt push -a; \ fi dh_testdir for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in ElmerGUIlogger/ElmerGUIlogger.pro; do \ cp -a $backupfile $backupfile.bak; \ done mkdir elmergrid/src/metis install -d post/src/fonts/TrueType for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do touch $missingfile; done for aclocaldir in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo Running aclocal/automake in module $aclocaldir; \ (cd $aclocaldir && aclocal && automake); \ done Running aclocal/automake in module eio configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level Running aclocal/automake in module matc Running aclocal/automake in module elmerparam configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level Running aclocal/automake in module hutiter configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level Running aclocal/automake in module meshgen2d Running aclocal/automake in module fem configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level Running aclocal/automake in module front src/Makefile.am:76: `%'-style pattern rules are a GNU make extension Running aclocal/automake in module elmergrid Running aclocal/automake in module post configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level src/Makefile.am:48: `%'-style pattern rules are a GNU make extension set -e; for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo; echo CONFIGURING ELMER MODULE $elmermodule; echo; \ (cd $elmermodule && \ autoconf && \ LIBS="-L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" \ CPPFLAGS=" -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2" \ FCPPFLAGS=" -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" \ CFLAGS="-g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC" \ CXXFLAGS="-g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC" \ FCFLAGS=" -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC" \ ./configure --prefix=/usr --with-metis=/usr \ --with-mpi-dir=/usr --with-mpi-inc-dir=/usr/include/mpi \ --with-blas=-lblas --with-lapack=-llapack \ --with-mumps=dmumps_scotch); \ echo; echo BUILDING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule; \ echo; echo INSTALLING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule install DESTDIR=/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp; \ done CONFIGURING ELMER MODULE eio configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for dummy main to link with Fortran libraries... (cached) none checking whether we are using the Microsoft C compiler... no checking for Fortran char* mangling scheme... char_ptr checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for ANSI C header files... (cached) yes checking whether we are using the Microsoft C compiler... (cached) no configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE eio make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make all-recursive make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' Making all in include make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/include' Making all in src make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOConstraintAgent.o -MD -MP -MF .deps/EIOConstraintAgent.Tpo -c -o EIOConstraintAgent.o EIOConstraintAgent.cpp EIOConstraintAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "constraints.header", ^ EIOConstraintAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "constraints.table" ^ 2 warnings generated. mv -f .deps/EIOConstraintAgent.Tpo .deps/EIOConstraintAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIODualMeshAgent.o -MD -MP -MF .deps/EIODualMeshAgent.Tpo -c -o EIODualMeshAgent.o EIODualMeshAgent.cpp EIODualMeshAgent.cpp:31:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.header", ^ EIODualMeshAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/dual.elements" ^ 2 warnings generated. mv -f .deps/EIODualMeshAgent.Tpo .deps/EIODualMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOGeometryAgent.o -MD -MP -MF .deps/EIOGeometryAgent.Tpo -c -o EIOGeometryAgent.o EIOGeometryAgent.cpp EIOGeometryAgent.cpp:30:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.header", ^ EIOGeometryAgent.cpp:31:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.nodes", ^ EIOGeometryAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.elements", ^ EIOGeometryAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.bodies", ^ EIOGeometryAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.loops", ^ EIOGeometryAgent.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.boundaries" ^ 6 warnings generated. mv -f .deps/EIOGeometryAgent.Tpo .deps/EIOGeometryAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOMeshAgent.o -MD -MP -MF .deps/EIOMeshAgent.Tpo -c -o EIOMeshAgent.o EIOMeshAgent.cpp EIOMeshAgent.cpp:73:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.header", ^ EIOMeshAgent.cpp:74:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.nodes", ^ EIOMeshAgent.cpp:75:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.elements", ^ EIOMeshAgent.cpp:76:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.boundary" ^ EIOMeshAgent.cpp:79:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.header", ^ EIOMeshAgent.cpp:80:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.nodes", ^ EIOMeshAgent.cpp:81:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.elements", ^ EIOMeshAgent.cpp:82:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.boundary", //"%s/%s.part.%d.boundary", ^ EIOMeshAgent.cpp:83:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.shared" ^ 9 warnings generated. mv -f .deps/EIOMeshAgent.Tpo .deps/EIOMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelDataAgent.o -MD -MP -MF .deps/EIOModelDataAgent.Tpo -c -o EIOModelDataAgent.o EIOModelDataAgent.cpp EIOModelDataAgent.cpp:101:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.header", ^ EIOModelDataAgent.cpp:102:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.coordinates", ^ EIOModelDataAgent.cpp:103:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.mesh_parameters", ^ EIOModelDataAgent.cpp:104:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.materials", ^ EIOModelDataAgent.cpp:105:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.boundary_conditions", ^ EIOModelDataAgent.cpp:106:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.initial_conditions", ^ EIOModelDataAgent.cpp:107:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.body_equations", ^ EIOModelDataAgent.cpp:108:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.body_forces", ^ EIOModelDataAgent.cpp:109:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.constants", ^ EIOModelDataAgent.cpp:110:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.bodies" ^ 10 warnings generated. mv -f .deps/EIOModelDataAgent.Tpo .deps/EIOModelDataAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelManager.o -MD -MP -MF .deps/EIOModelManager.Tpo -c -o EIOModelManager.o EIOModelManager.cpp mv -f .deps/EIOModelManager.Tpo .deps/EIOModelManager.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOPartWriter.o -MD -MP -MF .deps/EIOPartWriter.Tpo -c -o EIOPartWriter.o EIOPartWriter.cpp EIOPartWriter.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.header", ^ EIOPartWriter.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.nodes", ^ EIOPartWriter.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.shared", ^ EIOPartWriter.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.elements", ^ EIOPartWriter.cpp:36:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.border" ^ 5 warnings generated. mv -f .deps/EIOPartWriter.Tpo .deps/EIOPartWriter.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOSolverAgent.o -MD -MP -MF .deps/EIOSolverAgent.Tpo -c -o EIOSolverAgent.o EIOSolverAgent.cpp EIOSolverAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "solver.header", ^ EIOSolverAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "solver.records", ^ EIOSolverAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "timestep.header", ^ EIOSolverAgent.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "timestep.records" ^ 4 warnings generated. mv -f .deps/EIOSolverAgent.Tpo .deps/EIOSolverAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_c.o -MD -MP -MF .deps/eio_api_c.Tpo -c -o eio_api_c.o eio_api_c.cpp eio_api_c.cpp:59:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:59:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_c.cpp:59:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_c.cpp:76:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:76:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_c.cpp:76:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_c.cpp:114:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:114:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_c.cpp:114:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_c.cpp:127:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:127:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_c.cpp:127:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_c.cpp:268:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(meshAgent = new EIOMeshAgent(modelManager)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:268:16: note: use '==' to turn this assignment into an equality comparison if(meshAgent = new EIOMeshAgent(modelManager)) ^ == eio_api_c.cpp:268:16: note: place parentheses around the assignment to silence this warning if(meshAgent = new EIOMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:403:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:403:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_c.cpp:403:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:416:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:416:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_c.cpp:416:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:454:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:454:25: note: use '==' to turn this assignment into an equality comparison if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ == eio_api_c.cpp:454:25: note: place parentheses around the assignment to silence this warning if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ ( ) eio_api_c.cpp:575:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:575:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_c.cpp:575:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_c.cpp:588:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:588:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_c.cpp:588:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_c.cpp:942:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:942:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_c.cpp:942:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_c.cpp:955:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:955:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_c.cpp:955:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) 12 warnings generated. mv -f .deps/eio_api_c.Tpo .deps/eio_api_c.Po rm -f libeioc.a ar cru libeioc.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_c.o ranlib libeioc.a g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_f.o -MD -MP -MF .deps/eio_api_f.Tpo -c -o eio_api_f.o eio_api_f.cpp eio_api_f.cpp:60:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:60:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_f.cpp:60:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_f.cpp:77:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:77:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_f.cpp:77:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_f.cpp:115:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:115:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_f.cpp:115:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_f.cpp:128:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:128:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_f.cpp:128:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_f.cpp:269:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(meshAgent = new EIOMeshAgent(modelManager)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:269:16: note: use '==' to turn this assignment into an equality comparison if(meshAgent = new EIOMeshAgent(modelManager)) ^ == eio_api_f.cpp:269:16: note: place parentheses around the assignment to silence this warning if(meshAgent = new EIOMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:402:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:402:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_f.cpp:402:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:415:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:415:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_f.cpp:415:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:453:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:453:25: note: use '==' to turn this assignment into an equality comparison if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ == eio_api_f.cpp:453:25: note: place parentheses around the assignment to silence this warning if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ ( ) eio_api_f.cpp:574:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:574:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_f.cpp:574:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_f.cpp:587:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:587:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_f.cpp:587:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_f.cpp:941:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:941:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_f.cpp:941:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_f.cpp:954:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:954:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_f.cpp:954:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) 12 warnings generated. mv -f .deps/eio_api_f.Tpo .deps/eio_api_f.Po rm -f libeiof.a ar cru libeiof.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_f.o ranlib libeiof.a make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' INSTALLING ELMER MODULE eio make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' Making install in include make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /usr/bin/install -c -m 644 eio_api.h '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/include' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/include' Making install in src make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/src' test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libeioc.a libeiof.a '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libeioc.a ) ( cd '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libeiof.a ) make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio/src' make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/eio' CONFIGURING ELMER MODULE matc configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for ranlib... ranlib checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking for main in -lm... yes checking for main in -lcurses... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for tputs in -lncurses... yes checking for rl_set_keyboard_input_timeout in -lreadline... yes checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE matc make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make all-recursive make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' Making all in src make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT c3d.o -MD -MP -MF .deps/c3d.Tpo -c -o c3d.o c3d.c mv -f .deps/c3d.Tpo .deps/c3d.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT clip.o -MD -MP -MF .deps/clip.Tpo -c -o clip.o clip.c mv -f .deps/clip.Tpo .deps/clip.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT dri_ps.o -MD -MP -MF .deps/dri_ps.Tpo -c -o dri_ps.o dri_ps.c mv -f .deps/dri_ps.Tpo .deps/dri_ps.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eig.o -MD -MP -MF .deps/eig.Tpo -c -o eig.o eig.c mv -f .deps/eig.Tpo .deps/eig.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT error.o -MD -MP -MF .deps/error.Tpo -c -o error.o error.c mv -f .deps/error.Tpo .deps/error.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.c eval.c:488:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fnc = fnc_check(name)) fnc_free_entry(fnc); ~~~~^~~~~~~~~~~~~~~~~ eval.c:488:17: note: use '==' to turn this assignment into an equality comparison if (fnc = fnc_check(name)) fnc_free_entry(fnc); ^ == eval.c:488:17: note: place parentheses around the assignment to silence this warning if (fnc = fnc_check(name)) fnc_free_entry(fnc); ^ ( ) eval.c:440:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(root->data) ^ 2 warnings generated. mv -f .deps/eval.Tpo .deps/eval.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT files.o -MD -MP -MF .deps/files.Tpo -c -o files.o files.c mv -f .deps/files.Tpo .deps/files.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT funcs.o -MD -MP -MF .deps/funcs.Tpo -c -o funcs.o funcs.c mv -f .deps/funcs.Tpo .deps/funcs.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra.o -MD -MP -MF .deps/gra.Tpo -c -o gra.o gra.c mv -f .deps/gra.Tpo .deps/gra.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra_com.o -MD -MP -MF .deps/gra_com.Tpo -c -o gra_com.o gra_com.c mv -f .deps/gra_com.Tpo .deps/gra_com.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT jacobi.o -MD -MP -MF .deps/jacobi.Tpo -c -o jacobi.o jacobi.c mv -f .deps/jacobi.Tpo .deps/jacobi.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lists.o -MD -MP -MF .deps/lists.Tpo -c -o lists.o lists.c mv -f .deps/lists.Tpo .deps/lists.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lu.o -MD -MP -MF .deps/lu.Tpo -c -o lu.o lu.c mv -f .deps/lu.Tpo .deps/lu.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matc.o -MD -MP -MF .deps/matc.Tpo -c -o matc.o matc.c matc.c:406:8: warning: implicit declaration of function 'isatty' is invalid in C99 [-Wimplicit-function-declaration] if (isatty(fileno(math_in)) && isatty(fileno(math_out))) ^ 1 warning generated. mv -f .deps/matc.Tpo .deps/matc.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matrix.o -MD -MP -MF .deps/matrix.Tpo -c -o matrix.o matrix.c matrix.c:189:25: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration] if (seed == 0) seed = time(NULL); ^ 1 warning generated. mv -f .deps/matrix.Tpo .deps/matrix.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT oper.o -MD -MP -MF .deps/oper.Tpo -c -o oper.o oper.c mv -f .deps/oper.Tpo .deps/oper.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT optim.o -MD -MP -MF .deps/optim.Tpo -c -o optim.o optim.c optim.c:146:26: warning: use of logical && with constant operand; switch to bitwise & or remove constant [-Wconstant-logical-operand] if (com -> flags && CMDFLAG_CE) ^ ~~~~~~~~~~ optim.c:537:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(cptr->data) ^ 2 warnings generated. mv -f .deps/optim.Tpo .deps/optim.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o parser.c parser.c:299:12: warning: 40 enumeration values not handled in switch: 'nullsym', 'rightpar', 'indopen'... [-Wswitch-enum] switch(symbol) ^ parser.c:446:10: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:502:12: warning: 41 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:526:12: warning: 41 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:545:12: warning: 40 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:575:12: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:590:12: warning: 37 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:624:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:655:12: warning: 35 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:697:12: warning: 29 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:738:12: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:752:12: warning: 28 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:801:12: warning: 26 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ parser.c:854:12: warning: 25 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch-enum] switch(symbol) ^ 14 warnings generated. mv -f .deps/parser.Tpo .deps/parser.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT str.o -MD -MP -MF .deps/str.Tpo -c -o str.o str.c str.c:85:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security] sprintf(str_pstr, fmt); ^~~ 1 warning generated. mv -f .deps/str.Tpo .deps/str.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT urand.o -MD -MP -MF .deps/urand.Tpo -c -o urand.o urand.c mv -f .deps/urand.Tpo .deps/urand.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT variable.o -MD -MP -MF .deps/variable.Tpo -c -o variable.o variable.c mv -f .deps/variable.Tpo .deps/variable.Po rm -f libmatc.a ar cru libmatc.a c3d.o clip.o dri_ps.o eig.o error.o eval.o files.o funcs.o gra.o gra_com.o jacobi.o lists.o lu.o matc.o matrix.o oper.o optim.o parser.o str.o urand.o variable.o ranlib libmatc.a gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c main.c:22:9: warning: implicit declaration of function 'mtc_init' is invalid in C99 [-Wimplicit-function-declaration] (void)mtc_init( stdin, stdout, stderr ); ^ main.c:23:17: warning: implicit declaration of function 'mtc_domath' is invalid in C99 [-Wimplicit-function-declaration] str = (char *)mtc_domath( "source(\"mc.ini\")" ); ^ main.c:52:7: warning: implicit declaration of function 'free' is invalid in C99 [-Wimplicit-function-declaration] free(str); ^ 3 warnings generated. mv -f .deps/main.Tpo .deps/main.Po gcc -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -o matc main.o libmatc.a -lreadline -lncurses -lcurses -lm -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' INSTALLING ELMER MODULE matc make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' Making install in src make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc/src' test -z "/usr/bin" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin" /usr/bin/install -c matc '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin' test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libmatc.a '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libmatc.a ) test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /bin/mkdir -p '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include/elmer' /usr/bin/install -c -m 644 elmer/matc.h elmer/fnames.h elmer/gra.h '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include/elmer' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc/src' make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/matc' CONFIGURING ELMER MODULE elmerparam configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for ranlib... ranlib checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for xlf90... no checking for pathf90... no checking for ifort... no checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for option needed by f95 to find non-local *.mod-files... -I checking for *.mod-file naming convention... modulename.mod checking for iargc() declaration needed in Fortran code... !none iargc_decl = !none ./configure: line 4368: ACX_CHECK_B64FLAGS: command not found checking for R... yes checking for matlab... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/iargc_decl.inc config.status: creating src/R/elmerparam/src/Makevars config.status: creating src/R/Makefile config.status: creating src/matlab/Makefile config.status: creating test/Makefile config.status: creating test/make.inc config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE elmerparam make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/missing --run autoheader) configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h make all-recursive make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' Making all in src make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making all in . make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -MT elmerparam.o -MD -MP -MF .deps/elmerparam.Tpo -c -o elmerparam.o elmerparam.c mv -f .deps/elmerparam.Tpo .deps/elmerparam.Po cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -MT modelline.o -MD -MP -MF .deps/modelline.Tpo -c -o modelline.o modelline.c mv -f .deps/modelline.Tpo .deps/modelline.Po cc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -MT dynarray.o -MD -MP -MF .deps/dynarray.Tpo -c -o dynarray.o dynarray.c mv -f .deps/dynarray.Tpo .deps/dynarray.Po rm -f libelmerparam.a ar cru libelmerparam.a elmerparam.o modelline.o dynarray.o ranlib libelmerparam.a f95 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -c -o elmerparamf.o elmerparamf.f90 rm -f libelmerparamf.a ar cru libelmerparamf.a elmerparamf.o ranlib libelmerparamf.a f95 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -c -o ElmerParam.o ElmerParam.f90 f95 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -o ElmerParam ElmerParam.o libelmerparamf.a libelmerparam.a -L/usr/lib -lmatc -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making all in R make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making all in test make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' INSTALLING ELMER MODULE elmerparam make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' Making install in src make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making install in . make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' test -z "/usr/bin" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin" /usr/bin/install -c ElmerParam '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin' /usr/bin/install -c elmerparam.mod /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libelmerparam.a libelmerparamf.a '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libelmerparam.a ) ( cd '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libelmerparamf.a ) test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /usr/bin/install -c -m 644 elmerparam.h '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include' make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making install in R make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' R CMD build elmerparam * checking for file 'elmerparam/DESCRIPTION' ... OK * preparing 'elmerparam': * checking DESCRIPTION meta-information ... OK * cleaning src Warning: /tmp/Rtmpqj6q1D/Rbuild6c8effde/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'elmerparam_1.0.tar.gz' test -z "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R" || mkdir -p /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R R CMD INSTALL -l /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R elmerparam * installing *source* package 'elmerparam' ... ** libs make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/src' gcc -I/usr/share/R/include -I/usr/include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fpic -std=gnu99 -O3 -pipe -g -c elmerparam_rwrapper.c -o elmerparam_rwrapper.o elmerparam_rwrapper.c:55:8: warning: assigning to 'char *' from 'const char *' discards qualifiers tagp = CHAR(tag); ^ ~~~~~~~~~ 1 warning generated. gcc -shared -o elmerparam.so elmerparam_rwrapper.o -L/usr/lib -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -lelmerparam -lmatc -L/usr/lib/R/lib -lR make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/src' installing to /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib/R/elmerparam/libs ** R ** preparing package for lazy loading ** help Warning: /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/man/elmer-package.Rd:33: All text must be in a section Warning: /build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (elmerparam) make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src/R' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/src' Making install in test make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam/test' make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/elmerparam' CONFIGURING ELMER MODULE hutiter configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for default compilation flags... optimized checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether we are using the Microsoft C compiler... no checking for e_wsfe in -lg2c... no checking for saxpy_ in -lblas... checking for in ... yes configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating examples/Makefile config.status: creating examples/ex1/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps BUILDING ELMER MODULE hutiter make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make all-recursive make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' Making all in src make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_C.o huti_aux_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_D.o huti_aux_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_S.o huti_aux_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_Z.o huti_aux_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_C.o huti_bicgstab_2_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_D.o huti_bicgstab_2_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_S.o huti_bicgstab_2_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_Z.o huti_bicgstab_2_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_C.o huti_bicgstab_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_D.o huti_bicgstab_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_S.o huti_bicgstab_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_Z.o huti_bicgstab_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_C.o huti_cg_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_D.o huti_cg_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_C.o huti_cgs_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_D.o huti_cgs_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_S.o huti_cg_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_S.o huti_cgs_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_Z.o huti_cgs_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_Z.o huti_cg_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_C.o huti_gmres_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_D.o huti_gmres_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_S.o huti_gmres_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_Z.o huti_gmres_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_C.o huti_qmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_D.o huti_qmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_S.o huti_qmr_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_Z.o huti_qmr_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_C.o huti_tfqmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_D.o huti_tfqmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_S.o huti_tfqmr_S.F90 cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_main.o -MD -MP -MF .deps/huti_main.Tpo -c -o huti_main.o huti_main.c mv -f .deps/huti_main.Tpo .deps/huti_main.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_C.o -MD -MP -MF .deps/huti_sfe_c_C.Tpo -c -o huti_sfe_c_C.o huti_sfe_c_C.c huti_sfe_c_C.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_C.Tpo .deps/huti_sfe_c_C.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_D.o -MD -MP -MF .deps/huti_sfe_c_D.Tpo -c -o huti_sfe_c_D.o huti_sfe_c_D.c huti_sfe_c_D.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_D.Tpo .deps/huti_sfe_c_D.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_S.o -MD -MP -MF .deps/huti_sfe_c_S.Tpo -c -o huti_sfe_c_S.o huti_sfe_c_S.c huti_sfe_c_S.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_S.Tpo .deps/huti_sfe_c_S.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_Z.o -MD -MP -MF .deps/huti_sfe_c_Z.Tpo -c -o huti_sfe_c_Z.o huti_sfe_c_Z.c huti_sfe_c_Z.c:125:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_Z.Tpo .deps/huti_sfe_c_Z.Po gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_Z.o huti_tfqmr_Z.F90 rm -f libhuti.a ar cru libhuti.a huti_aux_C.o huti_aux_D.o huti_aux_S.o huti_aux_Z.o huti_bicgstab_2_C.o huti_bicgstab_2_D.o huti_bicgstab_2_S.o huti_bicgstab_2_Z.o huti_bicgstab_C.o huti_bicgstab_D.o huti_bicgstab_S.o huti_bicgstab_Z.o huti_cg_C.o huti_cg_D.o huti_cgs_C.o huti_cgs_D.o huti_cg_S.o huti_cgs_S.o huti_cgs_Z.o huti_cg_Z.o huti_gmres_C.o huti_gmres_D.o huti_gmres_S.o huti_gmres_Z.o huti_qmr_C.o huti_qmr_D.o huti_qmr_S.o huti_qmr_Z.o huti_tfqmr_C.o huti_tfqmr_D.o huti_tfqmr_S.o huti_main.o huti_sfe_c_C.o huti_sfe_c_D.o huti_sfe_c_S.o huti_sfe_c_Z.o huti_tfqmr_Z.o ranlib libhuti.a make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' Making all in include make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' Making all in examples make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' Making all in ex1 make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' INSTALLING ELMER MODULE hutiter make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' Making install in src make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' test -z "/usr/lib" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib" /usr/bin/install -c -m 644 libhuti.a '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' ( cd '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib' && ranlib libhuti.a ) make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/src' Making install in include make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include" /usr/bin/install -c -m 644 huti_defs.h huti_fdefs.h '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/include' Making install in examples make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' Making install in ex1 make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples/ex1' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter/examples' make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/hutiter' CONFIGURING ELMER MODULE meshgen2d configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for default compilation flags... optimized checking for answer to meaning of life... 42 checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for main in -lstdc++... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether to enable maintainer-specific portions of Makefiles... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE meshgen2d make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make all-recursive make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' Making all in src make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' Making all in include make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGGridMesh.o -MD -MP -MF .deps/BGGridMesh.Tpo -c -o BGGridMesh.o BGGridMesh.cpp mv -f .deps/BGGridMesh.Tpo .deps/BGGridMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGTriangleMesh.o -MD -MP -MF .deps/BGTriangleMesh.Tpo -c -o BGTriangleMesh.o BGTriangleMesh.cpp mv -f .deps/BGTriangleMesh.Tpo .deps/BGTriangleMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGVertex.o -MD -MP -MF .deps/BGVertex.Tpo -c -o BGVertex.o BGVertex.cpp mv -f .deps/BGVertex.Tpo .deps/BGVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Body.o -MD -MP -MF .deps/Body.Tpo -c -o Body.o Body.cpp mv -f .deps/Body.Tpo .deps/Body.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryElement.o -MD -MP -MF .deps/BoundaryElement.Tpo -c -o BoundaryElement.o BoundaryElement.cpp mv -f .deps/BoundaryElement.Tpo .deps/BoundaryElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryLayer.o -MD -MP -MF .deps/BoundaryLayer.Tpo -c -o BoundaryLayer.o BoundaryLayer.cpp mv -f .deps/BoundaryLayer.Tpo .deps/BoundaryLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Connect.o -MD -MP -MF .deps/Connect.Tpo -c -o Connect.o Connect.cpp mv -f .deps/Connect.Tpo .deps/Connect.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Element.o -MD -MP -MF .deps/Element.Tpo -c -o Element.o Element.cpp mv -f .deps/Element.Tpo .deps/Element.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT GeometryEdge.o -MD -MP -MF .deps/GeometryEdge.Tpo -c -o GeometryEdge.o GeometryEdge.cpp mv -f .deps/GeometryEdge.Tpo .deps/GeometryEdge.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp mv -f .deps/main.Tpo .deps/main.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Mesh.o -MD -MP -MF .deps/Mesh.Tpo -c -o Mesh.o Mesh.cpp mv -f .deps/Mesh.Tpo .deps/Mesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshNode.o -MD -MP -MF .deps/MeshNode.Tpo -c -o MeshNode.o MeshNode.cpp mv -f .deps/MeshNode.Tpo .deps/MeshNode.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshParser.o -MD -MP -MF .deps/MeshParser.Tpo -c -o MeshParser.o MeshParser.cpp MeshParser.cpp:367:39: warning: '&&' within '||' [-Wlogical-op-parentheses] if( !readInteger( loop->direction ) || ^ MeshParser.cpp:367:39: note: place parentheses around the '&&' expression to silence this warning if( !readInteger( loop->direction ) || ^ 1 warning generated. mv -f .deps/MeshParser.Tpo .deps/MeshParser.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o Node.cpp mv -f .deps/Node.Tpo .deps/Node.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT PQ.o -MD -MP -MF .deps/PQ.Tpo -c -o PQ.o PQ.cpp mv -f .deps/PQ.Tpo .deps/PQ.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadElement.o -MD -MP -MF .deps/QuadElement.Tpo -c -o QuadElement.o QuadElement.cpp mv -f .deps/QuadElement.Tpo .deps/QuadElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadLayer.o -MD -MP -MF .deps/QuadLayer.Tpo -c -o QuadLayer.o QuadLayer.cpp mv -f .deps/QuadLayer.Tpo .deps/QuadLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSMFVoronoiSegment.o -MD -MP -MF .deps/SSMFVoronoiSegment.Tpo -c -o SSMFVoronoiSegment.o SSMFVoronoiSegment.cpp mv -f .deps/SSMFVoronoiSegment.Tpo .deps/SSMFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSSFVoronoiSegment.o -MD -MP -MF .deps/SSSFVoronoiSegment.Tpo -c -o SSSFVoronoiSegment.o SSSFVoronoiSegment.cpp mv -f .deps/SSSFVoronoiSegment.Tpo .deps/SSSFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleElement.o -MD -MP -MF .deps/TriangleElement.Tpo -c -o TriangleElement.o TriangleElement.cpp mv -f .deps/TriangleElement.Tpo .deps/TriangleElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleNELayer.o -MD -MP -MF .deps/TriangleNELayer.Tpo -c -o TriangleNELayer.o TriangleNELayer.cpp mv -f .deps/TriangleNELayer.Tpo .deps/TriangleNELayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Vertex.o -MD -MP -MF .deps/Vertex.Tpo -c -o Vertex.o Vertex.cpp mv -f .deps/Vertex.Tpo .deps/Vertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiSegment.o -MD -MP -MF .deps/VoronoiSegment.Tpo -c -o VoronoiSegment.o VoronoiSegment.cpp mv -f .deps/VoronoiSegment.Tpo .deps/VoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiVertex.o -MD -MP -MF .deps/VoronoiVertex.Tpo -c -o VoronoiVertex.o VoronoiVertex.cpp mv -f .deps/VoronoiVertex.Tpo .deps/VoronoiVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VSVertex.o -MD -MP -MF .deps/VSVertex.Tpo -c -o VSVertex.o VSVertex.cpp mv -f .deps/VSVertex.Tpo .deps/VSVertex.Po g++ -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o ElmerMesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib g++ -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o Mesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' INSTALLING ELMER MODULE meshgen2d make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' Making install in src make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' Making install in include make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src/include' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' test -z "/usr/bin" || /bin/mkdir -p "/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin" /usr/bin/install -c ElmerMesh2D Mesh2D '/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d/src' make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/meshgen2d' CONFIGURING ELMER MODULE fem configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure: WARNING: unrecognized options: --with-metis checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ftello... yes checking for fseeko... yes checking for answer to meaning of life... 42 checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for /lib/cpp... yes checking for C++ linker flags... -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -L/usr/lib/x86_64-linux-gnu -lstdc++ -lm -lgcc_s -lgcc_s checking how to run the C preprocessor... /lib/cpp checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for Fortran char* mangling scheme... char_ptr checking if fortran implements CONTIGUOUS attribute... yes checking for fortran intrinsic etime... found checking for fortran intrinsic flush... found checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for mpi-directory... /usr checking for mpi-lib-directory... /usr/lib checking for mpi-inc-directory... /usr/include/mpi checking for mpi-library... checking for mpi-include... checking for compilation of an MPI program... seems ok checking for mpf90... no checking for mpxlf90... no checking for saxpy_ in -lblas... checking for in ... yes checking for cheev_ in -llapack... yes checking for huti_d_gmres_ in -lhuti... yes checking for eio_init_ in -leiof... yes checking for dseupd_ in -larpack... yes checking for pdneupd_ in -lparpack... yes checking for HYPRE_IJMatrixCreate in -lHYPRE_IJ_mv... yes checking for dmumps_ in -ldmumps_scotch... yes checking for umfpack_di_defaults in -lumfpack... yes checking for mtc_init in -lmatc... yes checking for main in -lm... yes checking for *.mod-file naming convention... modulename.mod checking for option to tell gfortran where to put *.mod-files... -J checking size of off_t... 8 ./configure: line 12975: 0: command not found defining FPICFLAG to be -fPIC defining CPICFLAG to be -fPIC defining CXXPICFLAG to be -fPIC defining SHLEXT to be so defining SHLLIB to be $(SHLEXT) defining SHLBIN to be defining SHLEXT_VER to be $(SHLEXT).$(version) defining SHLLIB_VER to be $(SHLLIB).$(version) defining SHLBIN_VER to be $(SHLBIN).$(version) defining SHLLINKEXT to be defining DLFCN_DIR to be defining SH_LD to be gfortran defining SH_LDFLAGS to be -shared defining SH_LINKING_TO_FLAGS to be -m64 -fPIC defining DL_LD to be $(SH_LD) defining DL_LDFLAGS to be $(SH_LDFLAGS) defining MKOCTFILE_DL_LDFLAGS to be defining SONAME_FLAGS to be defining NO_OCT_FILE_STRIP to be defining RLD_FLAG to be defining TEMPLATE_AR to be defining TEMPLATE_ARFLAGS to be defining library_path_var to be defining FCPPFLAGS to be -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS defining LIBSOLVER_DEPS to be -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib defining OFF_KIND to be selected_int_kind(18) defining LONG_KIND to be configure: creating ./config.status config.status: creating tests/runtests config.status: creating src/elmerf90 config.status: creating src/elmerf90-nosh config.status: creating src/elmerld config.status: creating Makefile config.status: creating Makeconf config.status: creating src/Makefile config.status: creating src/view3d/Makefile config.status: creating src/viewaxis/Makefile config.status: creating src/binio/Makefile config.status: creating src/binio/kinds.f90 config.status: creating src/binio/test/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis ELMER build options: Version 6.1 Install prefix /usr CPPFLAGS -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi FCPPFLAGS -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS CFLAGS -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi CXXFLAGS -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -fPIC FCFLAGS -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include FFLAGS -g -O2 -m64 -fPIC -fPIC -I. -I/usr/include/mpi LDFLAGS -L. -L/usr/lib LIBS -L. -ldl -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm SOLVER_LIBS -L. -ldl -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm -larpack -lparpack -lHYPRE_Euclid -lHYPRE_parcsr_ls -lHYPRE_ParaSails -lHYPRE_IJ_mv -ldmumps_scotch -lumfpack -lamd -lhuti -lmatc -leiof -L. -ldl -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm -llapack -lblas -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -L/usr/lib/x86_64-linux-gnu -lstdc++ -lm -lgcc_s -lgcc_s Compilers: Fortran 90 compiler gfortran Fortran 77 compiler gfortran CC gcc C++ g++ CPP /lib/cpp Libs: BLAS -lblas LAPACK -llapack HYPRE -lHYPRE_Euclid -lHYPRE_parcsr_ls -lHYPRE_ParaSails -lHYPRE_IJ_mv MUMPS -ldmumps_scotch UMFPACK -lumfpack -lamd ARPACK -larpack PARPACK -lparpack HUTI -lhuti EIO -leiof MPI -L/usr/lib MPI: yes BUILDING ELMER MODULE fem make[1]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem' make all-recursive make[2]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem' Making all in src make[3]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src' Making all in view3d make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/view3d' gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT ViewFactors.o -MD -MP -MF .deps/ViewFactors.Tpo -c -o ViewFactors.o ViewFactors.c ViewFactors.c:486:4: warning: implicit declaration of function 'elm_4node_quad_shape_functions' is invalid in C99 [-Wimplicit-function-declaration] elm_4node_quad_shape_functions( ShapeFunctionMatrix4 ); ^ 1 warning generated. mv -f .deps/ViewFactors.Tpo .deps/ViewFactors.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT TestModel.o -MD -MP -MF .deps/TestModel.Tpo -c -o TestModel.o TestModel.c TestModel.c:254:29: warning: conversion specifies type 'int' but the argument has type 'unsigned long' [-Wformat] fprintf( stderr, "SIZE: %d\n", NElements*sizeof(Geometry_t) ); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu 1 warning generated. mv -f .deps/TestModel.Tpo .deps/TestModel.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT LineUtil.o -MD -MP -MF .deps/LineUtil.Tpo -c -o LineUtil.o LineUtil.c mv -f .deps/LineUtil.Tpo .deps/LineUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT TriangleUtil.o -MD -MP -MF .deps/TriangleUtil.Tpo -c -o TriangleUtil.o TriangleUtil.c mv -f .deps/TriangleUtil.Tpo .deps/TriangleUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiLinearUtil.o -MD -MP -MF .deps/BiLinearUtil.Tpo -c -o BiLinearUtil.o BiLinearUtil.c mv -f .deps/BiLinearUtil.Tpo .deps/BiLinearUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiQuadraticUtil.o -MD -MP -MF .deps/BiQuadraticUtil.Tpo -c -o BiQuadraticUtil.o BiQuadraticUtil.c mv -f .deps/BiQuadraticUtil.Tpo .deps/BiQuadraticUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiCubicUtil.o -MD -MP -MF .deps/BiCubicUtil.Tpo -c -o BiCubicUtil.o BiCubicUtil.c mv -f .deps/BiCubicUtil.Tpo .deps/BiCubicUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT RayTrace.o -MD -MP -MF .deps/RayTrace.Tpo -c -o RayTrace.o RayTrace.c RayTrace.c:78:41: warning: '&&' within '||' [-Wlogical-op-parentheses] BBox->XMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxR && FX+DX>R || FX<-R && FX+DX<-R || ~~~~~~~~~~~~~~~ ^ RayTrace.c:686:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:686:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:686:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:686:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:686:50: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:687:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:687:29: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:687:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:687:50: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:688:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:688:29: note: place parentheses around the '&&' expression to silence this warning FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ^ ( ) RayTrace.c:746:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ~~~~~~~~~~~~~~~ ^ RayTrace.c:746:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:746:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:746:29: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:746:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:746:50: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ RayTrace.c:747:29: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:747:29: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:747:50: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:747:50: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ RayTrace.c:748:33: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ^ ~~~~~~~~~~~~~~~~~ RayTrace.c:748:33: note: place parentheses around the '&&' expression to silence this warning FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ^ ( ) RayTrace.c:863:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ RayTrace.c:863:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:863:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:863:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:863:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:863:82: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:864:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:864:45: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:864:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:864:82: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:865:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:865:45: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) RayTrace.c:965:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ RayTrace.c:965:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:965:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:965:45: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:965:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:965:82: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ RayTrace.c:966:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:966:45: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:966:82: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:966:82: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ RayTrace.c:967:45: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RayTrace.c:967:45: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) 30 warnings generated. mv -f .deps/RayTrace.Tpo .deps/RayTrace.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT VectorUtil.o -MD -MP -MF .deps/VectorUtil.Tpo -c -o VectorUtil.o VectorUtil.c mv -f .deps/VectorUtil.Tpo .deps/VectorUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT LUDecomp.o -MD -MP -MF .deps/LUDecomp.Tpo -c -o LUDecomp.o LUDecomp.c mv -f .deps/LUDecomp.Tpo .deps/LUDecomp.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT 2d_4node.o -MD -MP -MF .deps/2d_4node.Tpo -c -o 2d_4node.o 2d_4node.c mv -f .deps/2d_4node.Tpo .deps/2d_4node.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT 16node_quad.o -MD -MP -MF .deps/16node_quad.Tpo -c -o 16node_quad.o 16node_quad.c mv -f .deps/16node_quad.Tpo .deps/16node_quad.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT second.o -MD -MP -MF .deps/second.Tpo -c -o second.o second.c mv -f .deps/second.Tpo .deps/second.Po rm -f libview3d.a ar cru libview3d.a ViewFactors.o TestModel.o LineUtil.o TriangleUtil.o BiLinearUtil.o BiQuadraticUtil.o BiCubicUtil.o RayTrace.o VectorUtil.o LUDecomp.o 2d_4node.o 16node_quad.o second.o ranlib libview3d.a make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/view3d' Making all in viewaxis make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/viewaxis' g++ -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -fPIC -MT viewfact.o -MD -MP -MF .deps/viewfact.Tpo -c -o viewfact.o viewfact.cpp mv -f .deps/viewfact.Tpo .deps/viewfact.Po rm -f libviewaxis.a ar cru libviewaxis.a viewfact.o ranlib libviewaxis.a make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/viewaxis' Making all in binio make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' Making all in test make[5]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio/test' make[5]: Nothing to be done for `all'. make[5]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio/test' make[5]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' gcc -DHAVE_CONFIG_H -I. -I../.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT binio.o -MD -MP -MF .deps/binio.Tpo -c -o binio.o binio.c mv -f .deps/binio.Tpo .deps/binio.Po gfortran -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include -c -o kinds.o kinds.f90 gfortran -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include -c -o biniomod.o biniomod.f90 rm -f libbinio.a ar cru libbinio.a binio.o kinds.o biniomod.o ranlib libbinio.a make[5]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src/binio' make[4]: Entering directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT SC2Elmer.o -MD -MP -MF .deps/SC2Elmer.Tpo -c -o SC2Elmer.o SC2Elmer.c mv -f .deps/SC2Elmer.Tpo .deps/SC2Elmer.Po gcc -g -O2 -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -L. -L/usr/lib -o SC2Elmer SC2Elmer.o -L. -ldl -L/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/lib -L/usr/lib -lm cp mpif_stub.h mpif /lib/cpp -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src > NavierStokes.f90 0 libLLVM-2.9.so.1 0x00002b0c35f1ec6f 1 libLLVM-2.9.so.1 0x00002b0c35f1f211 2 libpthread.so.0 0x00002b0c36779020 3 cpp 0x000000000057b5ef clang::driver::Driver::BuildActions(clang::driver::ToolChain const&, clang::driver::DerivedArgList const&, llvm::SmallVector&) const + 879 4 cpp 0x0000000000581f95 clang::driver::Driver::BuildCompilation(int, char const**) + 2261 5 cpp 0x00000000005237d0 main + 2528 6 libc.so.6 0x00002b0c37554ead __libc_start_main + 253 7 cpp 0x0000000000524065 Stack dump: 0. Program arguments: /lib/cpp -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=,CONTIGUOUS -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src 1. Compilation construction 2. Building compilation actions /bin/bash: line 1: 7625 Segmentation fault /lib/cpp -I/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src > NavierStokes.f90 make[4]: *** [NavierStokes.f90] Error 139 make[4]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem/src' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem' make[1]: *** [all] Error 2 make[1]: Leaving directory `/build/elmerfem-uM4zmY/elmerfem-6.1.0.svn.5272.dfsg/fem' make: *** [stamp-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1302 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-dc2ab76c-e27b-4ee8-a4d2-54355f54516a/build/elmerfem-uM4zmY Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 144204 Build-Time: 68 Distribution: lsid64c Fail-Stage: build Install-Time: 28 Job: elmerfem_6.1.0.svn.5272.dfsg-1 Package: elmerfem Package-Time: 111 Source-Version: 6.1.0.svn.5272.dfsg-1 Space: 144204 Status: attempted Version: 6.1.0.svn.5272.dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1302 Build needed 00:01:51, 144204k disc space DC-Build-Status: Failed 2060.347911s ### Content of /var/log/daemon.log ### Sep 11 10:47:48 talc-101 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:47:59 talc-101 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:10 talc-101 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:34 talc-101 approx: Concurrent download of debian/dists/sid/main/source/Sources.xz is taking too long Sep 11 10:48:42 talc-101 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:48:45 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:48:47 talc-101 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:48:56 talc-101 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:48:59 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en is taking too long Sep 11 10:49:07 talc-101 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:22 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:22 talc-101 approx: Concurrent download of debian/dists/sid/main/source/Sources.xz is taking too long Sep 11 10:49:33 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:43 talc-101 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:49:48 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:54 talc-101 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:49:59 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:10 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:15 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.gz is taking too long Sep 11 10:50:21 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:51:11 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.bz2 is taking too long Sep 11 10:51:22 talc-101 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:51:34 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.xz is taking too long Sep 11 10:51:50 talc-101 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en is taking too long ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 2060.347911 versus expected 863 (r/m: 1.3874251575898 ; m: 863.0) DC-Build-Network: USED. See /tmp/rulesafter.99ksAB ! ************************************************************ # Generated by iptables-save v1.4.8 on Sun Sep 11 13:02:28 2011 *filter :INPUT ACCEPT [2820277:14345421141] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [996574:12399242076] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [639907:82540668] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [3865:372152] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [12:720] -A OUTPUT -j LD [12:720] -A LD -j LOG [12:720] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Sun Sep 11 13:02:28 2011 ************************************************************ --- /tmp/rulesbefore.Wz0oVD 2011-09-11 12:28:08.082168640 +0200 +++ /tmp/rulesafter.99ksAB 2011-09-11 13:02:28.439420858 +0200 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Sun Sep 11 12:28:08 2011 +# Generated by iptables-save v1.4.8 on Sun Sep 11 13:02:28 2011 *filter -:INPUT ACCEPT [2263913:11240395343] +:INPUT ACCEPT [2820277:14345421141] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[763609:9589449870] -A OUTPUT -o lo -j ACCEPT +[996574:12399242076] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,10 +16,10 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[539020:66127159] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT -[2911:281828] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[639907:82540668] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[3865:372152] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [12:720] -A OUTPUT -j LD [12:720] -A LD -j LOG [12:720] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Sun Sep 11 12:28:08 2011 +# Completed on Sun Sep 11 13:02:28 2011 ************************************************************ [ 11.681794] ioatdma 0000:00:0f.0: irq 58 for MSI/MSI-X [ 11.681796] alloc irq_desc for 59 on node -1 [ 11.681797] alloc kstat_irqs on node -1 [ 11.681800] ioatdma 0000:00:0f.0: irq 59 for MSI/MSI-X [ 11.682250] ACPI: SSDT 00000000bff00f00 0016E (v01 PmRef Cpu3Ist 00003000 INTL 20050228) [ 11.732057] intel_rng: FWH not detected [ 11.755864] processor LNXCPU:03: registered as cooling_device3 [ 11.791442] ACPI: SSDT 00000000bff0106e 0016E (v01 PmRef CPU4Ist 00003000 INTL 20050228) [ 11.841926] processor LNXCPU:04: registered as cooling_device4 [ 11.877554] ACPI: SSDT 00000000bff011dc 0016E (v01 PmRef CPU5Ist 00003000 INTL 20050228) [ 11.927859] processor LNXCPU:05: registered as cooling_device5 [ 11.963398] ACPI: SSDT 00000000bff0134a 0016E (v01 PmRef Cpu6Ist 00003000 INTL 20050228) [ 12.013677] processor LNXCPU:06: registered as cooling_device6 [ 12.049222] ACPI: SSDT 00000000bff014b8 0016E (v01 PmRef Cpu7Ist 00003000 INTL 20050228) [ 12.099550] processor LNXCPU:07: registered as cooling_device7 [ 12.877749] Adding 3911788k swap on /dev/sda1. Priority:-1 extents:1 across:3911788k [ 12.927446] EXT3 FS on sda3, internal journal [ 13.194305] kjournald starting. Commit interval 5 seconds [ 13.227254] EXT3 FS on sda5, internal journal [ 13.253488] EXT3-fs: mounted filesystem with ordered data mode. [ 13.608274] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.664052] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.666179] ADDRCONF(NETDEV_UP): eth0: link is not ready [ 16.807937] e1000e: eth0 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX/TX [ 16.857617] ADDRCONF(NETDEV_CHANGE): eth0: link becomes ready [ 27.604006] eth0: no IPv6 routers present [ 403.266966] RPC: Registered udp transport module. [ 403.295244] RPC: Registered tcp transport module. [ 403.323461] RPC: Registered tcp NFSv4.1 backchannel transport module. [ 403.394011] Slow work thread pool: Starting up [ 403.420789] Slow work thread pool: Ready [ 403.444381] FS-Cache: Loaded [ 403.494118] FS-Cache: Netfs 'nfs' registered for caching [ 403.532862] svc: failed to register lockdv1 RPC service (errno 97). [ 432.880943] Adding 296929352k swap on /dev/sda5. Priority:-2 extents:1 across:296929352k [ 456.449527] ip_tables: (C) 2000-2006 Netfilter Core Team [ 2924.264988] IN= OUT=eth0 SRC=172.16.66.101 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=30905 DF PROTO=TCP SPT=48027 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2927.353780] IN= OUT=eth0 SRC=172.16.66.101 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=30906 DF PROTO=TCP SPT=48027 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2927.626816] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=37509 DF PROTO=TCP SPT=45305 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2930.717774] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=37510 DF PROTO=TCP SPT=45305 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2930.899792] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=8018 DF PROTO=TCP SPT=45306 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2933.989525] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=8019 DF PROTO=TCP SPT=45306 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2935.696221] IN= OUT=eth0 SRC=172.16.66.101 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=41634 DF PROTO=TCP SPT=48030 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2938.789026] IN= OUT=eth0 SRC=172.16.66.101 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=41635 DF PROTO=TCP SPT=48030 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2938.882044] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=46074 DF PROTO=TCP SPT=45308 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2941.973034] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=46075 DF PROTO=TCP SPT=45308 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2942.066889] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=10184 DF PROTO=TCP SPT=45309 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2945.156300] IN= OUT=eth0 SRC=172.16.66.101 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=10185 DF PROTO=TCP SPT=45309 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7470.095883] cpp[20062]: segfault at 0 ip 000000000057b5ef sp 00007fff789dd000 error 4 in clang[400000+8e1000] [ 8783.340298] cpp[7625]: segfault at 0 ip 000000000057b5ef sp 00007fff07bfe240 error 4 in clang[400000+8e1000] ************************************************************