DC-Build-Header: bowtie 0.12.7-1 / Fri Jan 13 00:05:30 +0100 2012 sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on stremi-1.reims.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ bowtie 0.12.7-1 (amd64) 13 Jan 2012 00:05 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: bowtie Version: 0.12.7-1 Source Version: 0.12.7-1 Distribution: lsid64b Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Get:1 http://localhost sid Release.gpg [836 B] Get:2 http://localhost sid Release [188 kB] Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Get:3 http://localhost sid/main Sources [7544 kB] Get:4 http://localhost sid/main amd64 Packages [10.4 MB] Ign http://localhost sid/main Translation-en Fetched 18.2 MB in 3s (5443 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: clang cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'bowtie' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk Need to get 7517 kB of source archives. Get:1 http://localhost/debian/ sid/main bowtie 0.12.7-1 (dsc) [1389 B] Get:2 http://localhost/debian/ sid/main bowtie 0.12.7-1 (tar) [7511 kB] Get:3 http://localhost/debian/ sid/main bowtie 0.12.7-1 (diff) [4813 B] Fetched 7517 kB in 2s (3360 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/bowtie-tNbOtO/resolver-VAkDaN/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10821 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64b-91051184-2916-457d-89eb-c8452c3dc246/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.1), help2man Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.1), help2man dpkg-deb: building package `sbuild-build-depends-bowtie-dummy' in `/build/bowtie-tNbOtO/resolver-396042/apt_archive/sbuild-build-depends-bowtie-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install bowtie build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bowtie-dummy 0 upgraded, 20 newly installed, 0 to remove and 10 not upgraded. Need to get 9627 kB/9628 kB of archives. After this operation, 26.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 liblocale-gettext-perl libpcre3 libglib2.0-0 libxml2 libcroco3 libunistring0 bsdmainutils groff-base man-db libmagic1 file gettext-base html2text gettext intltool-debian po-debconf debhelper help2man sbuild-build-depends-bowtie-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-5 [38.2 kB] Get:2 http://localhost/debian/ sid/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB] Get:3 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:4 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.30.2-4 [1844 kB] Get:5 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-5.1 [891 kB] Get:6 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-2 [122 kB] Get:7 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-5 [434 kB] Get:8 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:9 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:10 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-3 [1015 kB] Get:11 http://localhost/debian/ sid/main libmagic1 amd64 5.09-2 [246 kB] Get:12 http://localhost/debian/ sid/main file amd64 5.09-2 [52.0 kB] Get:13 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-5 [154 kB] Get:14 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:15 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-5 [2080 kB] Get:16 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:17 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu2 [224 kB] Get:18 http://localhost/debian/ sid/main debhelper all 8.9.14 [693 kB] Get:19 http://localhost/debian/ sid/main help2man amd64 1.40.5 [95.6 kB] Preconfiguring packages ... Fetched 9627 kB in 0s (41.3 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 10821 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package liblocale-gettext-perl. Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ... Selecting previously unselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... 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Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up gettext-base (0.18.1.1-5) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (8.9.14) ... Setting up help2man (1.40.5) ... Setting up sbuild-build-depends-bowtie-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.8-2 Package versions: apt_0.8.15.9 apt-utils_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-4 bsdmainutils_8.2.3 bsdutils_1:2.20.1-1.1 build-essential_11.5 bzip2_1.0.6-1 clang_3.0-5 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.14 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-9 gcc_4:4.6.2-4 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 help2man_1.40.5 hostname_3.09 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.1 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclang-common-dev_3.0-5 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-9 libllvm3.0_3.0-5 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.20.1-1.1 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libquadmath0_4.6.2-9 libreadline6_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.1 libxml2_2.7.8.dfsg-5.1 linux-libc-dev_3.1.8-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.20.1-1.1 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-bowtie-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Feb 2 13:49:54 2011 CET using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bowtie_0.12.7-1.dsc dpkg-source: info: extracting bowtie in bowtie-0.12.7 dpkg-source: info: unpacking bowtie_0.12.7.orig.tar.gz dpkg-source: info: unpacking bowtie_0.12.7-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: source package bowtie dpkg-buildpackage: source version 0.12.7-1 dpkg-source --before-build bowtie-0.12.7 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/bowtie-tNbOtO/bowtie-0.12.7' rm -f .bowtie* dh_auto_clean make[2]: Entering directory `/build/bowtie-tNbOtO/bowtie-0.12.7' rm -f bowtie-build bowtie bowtie-inspect bowtie-build-debug bowtie-debug bowtie-inspect-debug \ bowtie_prof \ bowtie-build.exe bowtie.exe bowtie-inspect.exe bowtie-build-debug.exe bowtie-debug.exe bowtie-inspect-debug.exe bowtie_prof.exe \ bowtie-src.zip bowtie-bin.zip rm -f core.* make[2]: Leaving directory `/build/bowtie-tNbOtO/bowtie-0.12.7' make[1]: Leaving directory `/build/bowtie-tNbOtO/bowtie-0.12.7' dh_clean dpkg-source -b bowtie-0.12.7 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building bowtie using existing ./bowtie_0.12.7.orig.tar.gz dpkg-source: info: building bowtie in bowtie_0.12.7-1.debian.tar.gz dpkg-source: info: building bowtie in bowtie_0.12.7-1.dsc debian/rules build dh build dh_testdir dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory `/build/bowtie-tNbOtO/bowtie-0.12.7' /usr/bin/make allall make[2]: Entering directory `/build/bowtie-tNbOtO/bowtie-0.12.7' cat ebwt_build.cpp ccnt_lut.cpp ref_read.cpp alphabet.c shmem.cpp edit.cpp ebwt.cpp aligner.h aligner_0mm.h aligner_1mm.h aligner_23mm.h aligner_metrics.h aligner_seed_mm.h alphabet.h annot.h assert_helpers.h auto_array.h binary_sa_search.h bitpack.h bitset.h blockwise_sa.h color.h color_dec.h diff_sample.h ebwt.h ebwt_search_backtrack.h ebwt_search_util.h edit.h endian_swap.h filebuf.h formats.h hit.h hit_set.h log.h mm.h multikey_qsort.h pat.h pool.h qual.h random_source.h range.h range_cache.h range_chaser.h range_source.h ref_aligner.h ref_read.h reference.h refmap.h row_chaser.h sam.h search_globals.h sequence_io.h shmem.h spinlock.h str_util.h threading.h timer.h tokenize.h word_io.h zbox.h | md5sum | awk '{print $1}' > .bowtie-build.md5 /usr/bin/g++ -O3 -DCOMPILER_OPTIONS="\"-O3 -Wl,--hash-style=both \"" -Wl,--hash-style=both \ -DEBWT_BUILD_HASH=`cat .bowtie-build.md5` \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -DNDEBUG -Wall \ -I SeqAn-1.1 \ -o bowtie-build ebwt_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.c shmem.cpp edit.cpp ebwt.cpp bowtie_build_main.cpp \ clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated In file included from ebwt_build.cpp:11: ./ebwt.h:1501:1: warning: 'SideLocus' defined as a struct here but previously declared as a class [-Wmismatched-tags] struct SideLocus { ^ ./ebwt.h:306:1: note: did you mean struct here? class SideLocus; ^~~~~ struct ./ebwt.h:3938:11: error: default arguments cannot be added to an out-of-line definition of a member of a class template uint32_t seed = 0) ^ ~ In file included from ebwt_build.cpp:11: In file included from ./ebwt.h:24: ./alphabet.h:48:3: error: call to function 'reverseInPlace' that is neither visible in the template definition nor found by argument-dependent lookup reverseInPlace(s); ^ ./hit.h:97:4: note: in instantiation of function template specialization 'reverseComplementInPlace, seqan::Alloc > >' requested here reverseComplementInPlace(hs.seq, hs.color); ^ ./alphabet.h:74:20: note: 'reverseInPlace' should be declared prior to the call site or in namespace 'seqan' static inline void reverseInPlace(TStr& s) { ^ 1 warning and 2 errors generated. make[2]: *** [bowtie-build] Error 1 make[2]: Leaving directory `/build/bowtie-tNbOtO/bowtie-0.12.7' make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory `/build/bowtie-tNbOtO/bowtie-0.12.7' make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120113-0005 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64b-91051184-2916-457d-89eb-c8452c3dc246/build/bowtie-tNbOtO Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 16232 Build-Time: 5 Distribution: lsid64b Fail-Stage: build Install-Time: 6 Job: bowtie_0.12.7-1 Package: bowtie Package-Time: 27 Source-Version: 0.12.7-1 Space: 16232 Status: attempted Version: 0.12.7-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120113-0005 Build needed 00:00:27, 16232k disc space DC-Message: Failed, but took only 27.921101. Retrying, you never know. Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on stremi-1.reims.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ bowtie 0.12.7-1 (amd64) 13 Jan 2012 00:09 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: bowtie Version: 0.12.7-1 Source Version: 0.12.7-1 Distribution: lsid64b Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Get:1 http://localhost sid Release.gpg [836 B] Get:2 http://localhost sid Release [188 kB] Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Get:3 http://localhost sid/main Sources [7544 kB] Get:4 http://localhost sid/main amd64 Packages [10.4 MB] Ign http://localhost sid/main Translation-en Fetched 18.2 MB in 4s (3976 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: clang cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'bowtie' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk Need to get 7517 kB of source archives. Get:1 http://localhost/debian/ sid/main bowtie 0.12.7-1 (dsc) [1389 B] Get:2 http://localhost/debian/ sid/main bowtie 0.12.7-1 (tar) [7511 kB] Get:3 http://localhost/debian/ sid/main bowtie 0.12.7-1 (diff) [4813 B] Fetched 7517 kB in 0s (41.7 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/bowtie-eCr4jr/resolver-hJDfws/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10821 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64b-9af05838-d25e-405a-9810-db5914fe0a61/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.1), help2man Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.1), help2man dpkg-deb: building package `sbuild-build-depends-bowtie-dummy' in `/build/bowtie-eCr4jr/resolver-qtkFqw/apt_archive/sbuild-build-depends-bowtie-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install bowtie build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bowtie-dummy 0 upgraded, 20 newly installed, 0 to remove and 10 not upgraded. Need to get 9627 kB/9628 kB of archives. After this operation, 26.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 liblocale-gettext-perl libpcre3 libglib2.0-0 libxml2 libcroco3 libunistring0 bsdmainutils groff-base man-db libmagic1 file gettext-base html2text gettext intltool-debian po-debconf debhelper help2man sbuild-build-depends-bowtie-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-5 [38.2 kB] Get:2 http://localhost/debian/ sid/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB] Get:3 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:4 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.30.2-4 [1844 kB] Get:5 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-5.1 [891 kB] Get:6 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-2 [122 kB] Get:7 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-5 [434 kB] Get:8 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:9 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:10 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-3 [1015 kB] Get:11 http://localhost/debian/ sid/main libmagic1 amd64 5.09-2 [246 kB] Get:12 http://localhost/debian/ sid/main file amd64 5.09-2 [52.0 kB] Get:13 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-5 [154 kB] Get:14 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:15 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-5 [2080 kB] Get:16 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:17 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu2 [224 kB] Get:18 http://localhost/debian/ sid/main debhelper all 8.9.14 [693 kB] Get:19 http://localhost/debian/ sid/main help2man amd64 1.40.5 [95.6 kB] Preconfiguring packages ... Fetched 9627 kB in 0s (41.7 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 10821 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package liblocale-gettext-perl. Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ... Selecting previously unselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.14_all.deb) ... Selecting previously unselected package help2man. Unpacking help2man (from .../help2man_1.40.5_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-bowtie-dummy. Unpacking sbuild-build-depends-bowtie-dummy (from .../sbuild-build-depends-bowtie-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-5) ... Setting up liblocale-gettext-perl (1.05-7+b1) ... Setting up libpcre3 (8.12-4) ... Setting up libglib2.0-0 (2.30.2-4) ... No schema files found: doing nothing. Setting up libxml2 (2.7.8.dfsg-5.1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up gettext-base (0.18.1.1-5) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (8.9.14) ... Setting up help2man (1.40.5) ... Setting up sbuild-build-depends-bowtie-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.8-2 Package versions: apt_0.8.15.9 apt-utils_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-4 bsdmainutils_8.2.3 bsdutils_1:2.20.1-1.1 build-essential_11.5 bzip2_1.0.6-1 clang_3.0-5 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.14 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-9 gcc_4:4.6.2-4 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 help2man_1.40.5 hostname_3.09 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.1 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclang-common-dev_3.0-5 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-9 libllvm3.0_3.0-5 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.20.1-1.1 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libquadmath0_4.6.2-9 libreadline6_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.1 libxml2_2.7.8.dfsg-5.1 linux-libc-dev_3.1.8-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.20.1-1.1 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-bowtie-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Feb 2 13:49:54 2011 CET using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bowtie_0.12.7-1.dsc dpkg-source: info: extracting bowtie in bowtie-0.12.7 dpkg-source: info: unpacking bowtie_0.12.7.orig.tar.gz dpkg-source: info: unpacking bowtie_0.12.7-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: source package bowtie dpkg-buildpackage: source version 0.12.7-1 dpkg-source --before-build bowtie-0.12.7 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/bowtie-eCr4jr/bowtie-0.12.7' rm -f .bowtie* dh_auto_clean make[2]: Entering directory `/build/bowtie-eCr4jr/bowtie-0.12.7' rm -f bowtie-build bowtie bowtie-inspect bowtie-build-debug bowtie-debug bowtie-inspect-debug \ bowtie_prof \ bowtie-build.exe bowtie.exe bowtie-inspect.exe bowtie-build-debug.exe bowtie-debug.exe bowtie-inspect-debug.exe bowtie_prof.exe \ bowtie-src.zip bowtie-bin.zip rm -f core.* make[2]: Leaving directory `/build/bowtie-eCr4jr/bowtie-0.12.7' make[1]: Leaving directory `/build/bowtie-eCr4jr/bowtie-0.12.7' dh_clean dpkg-source -b bowtie-0.12.7 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building bowtie using existing ./bowtie_0.12.7.orig.tar.gz dpkg-source: info: building bowtie in bowtie_0.12.7-1.debian.tar.gz dpkg-source: info: building bowtie in bowtie_0.12.7-1.dsc debian/rules build dh build dh_testdir dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory `/build/bowtie-eCr4jr/bowtie-0.12.7' /usr/bin/make allall make[2]: Entering directory `/build/bowtie-eCr4jr/bowtie-0.12.7' cat ebwt_build.cpp ccnt_lut.cpp ref_read.cpp alphabet.c shmem.cpp edit.cpp ebwt.cpp aligner.h aligner_0mm.h aligner_1mm.h aligner_23mm.h aligner_metrics.h aligner_seed_mm.h alphabet.h annot.h assert_helpers.h auto_array.h binary_sa_search.h bitpack.h bitset.h blockwise_sa.h color.h color_dec.h diff_sample.h ebwt.h ebwt_search_backtrack.h ebwt_search_util.h edit.h endian_swap.h filebuf.h formats.h hit.h hit_set.h log.h mm.h multikey_qsort.h pat.h pool.h qual.h random_source.h range.h range_cache.h range_chaser.h range_source.h ref_aligner.h ref_read.h reference.h refmap.h row_chaser.h sam.h search_globals.h sequence_io.h shmem.h spinlock.h str_util.h threading.h timer.h tokenize.h word_io.h zbox.h | md5sum | awk '{print $1}' > .bowtie-build.md5 /usr/bin/g++ -O3 -DCOMPILER_OPTIONS="\"-O3 -Wl,--hash-style=both \"" -Wl,--hash-style=both \ -DEBWT_BUILD_HASH=`cat .bowtie-build.md5` \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -DNDEBUG -Wall \ -I SeqAn-1.1 \ -o bowtie-build ebwt_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.c shmem.cpp edit.cpp ebwt.cpp bowtie_build_main.cpp \ clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated In file included from ebwt_build.cpp:11: ./ebwt.h:1501:1: warning: 'SideLocus' defined as a struct here but previously declared as a class [-Wmismatched-tags] struct SideLocus { ^ ./ebwt.h:306:1: note: did you mean struct here? class SideLocus; ^~~~~ struct ./ebwt.h:3938:11: error: default arguments cannot be added to an out-of-line definition of a member of a class template uint32_t seed = 0) ^ ~ In file included from ebwt_build.cpp:11: In file included from ./ebwt.h:24: ./alphabet.h:48:3: error: call to function 'reverseInPlace' that is neither visible in the template definition nor found by argument-dependent lookup reverseInPlace(s); ^ ./hit.h:97:4: note: in instantiation of function template specialization 'reverseComplementInPlace, seqan::Alloc > >' requested here reverseComplementInPlace(hs.seq, hs.color); ^ ./alphabet.h:74:20: note: 'reverseInPlace' should be declared prior to the call site or in namespace 'seqan' static inline void reverseInPlace(TStr& s) { ^ 1 warning and 2 errors generated. make[2]: *** [bowtie-build] Error 1 make[2]: Leaving directory `/build/bowtie-eCr4jr/bowtie-0.12.7' make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory `/build/bowtie-eCr4jr/bowtie-0.12.7' make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120113-0010 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64b-9af05838-d25e-405a-9810-db5914fe0a61/build/bowtie-eCr4jr Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 16232 Build-Time: 5 Distribution: lsid64b Fail-Stage: build Install-Time: 6 Job: bowtie_0.12.7-1 Package: bowtie Package-Time: 25 Source-Version: 0.12.7-1 Space: 16232 Status: attempted Version: 0.12.7-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120113-0010 Build needed 00:00:25, 16232k disc space DC-Build-Status: Failed 294.853535s ### Content of /var/log/daemon.log ### Jan 12 21:02:41 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:11 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:22 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:33 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:44 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:55 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:05:06 stremi-1 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:05:50 stremi-1 approx: Concurrent download of debian/dists/sid/Release is taking too long Jan 12 21:05:56 stremi-1 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Jan 12 21:05:56 stremi-1 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.bz2 is taking too long Jan 12 21:06:11 stremi-1 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Jan 12 21:06:14 stremi-1 approx: Concurrent download of debian/dists/sid/main/source/Sources.xz is taking too long Jan 12 21:06:24 stremi-1 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.gz is taking too long ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 294.853535 versus expected 132 (r/m: 1.23373890151515 ; m: 132.0) DC-Build-Network: USED. See /tmp/rulesafter.ICFeVY ! ************************************************************ # Generated by iptables-save v1.4.8 on Fri Jan 13 00:10:25 2012 *filter :INPUT ACCEPT [3484829:21798973226] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [1988874:17173642398] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [346996:116175996] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 192.168.67.0/24 -j ACCEPT [22963:3061444] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [28:1680] -A OUTPUT -j LD [28:1680] -A LD -j LOG [28:1680] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Fri Jan 13 00:10:25 2012 ************************************************************ --- /tmp/rulesbefore.qb22Wt 2012-01-13 00:05:30.528660988 +0100 +++ /tmp/rulesafter.ICFeVY 2012-01-13 00:10:25.387654468 +0100 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Fri Jan 13 00:05:30 2012 +# Generated by iptables-save v1.4.8 on Fri Jan 13 00:10:25 2012 *filter -:INPUT ACCEPT [3406074:21202635379] +:INPUT ACCEPT [3484829:21798973226] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[1944949:16631629697] -A OUTPUT -o lo -j ACCEPT +[1988874:17173642398] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,11 +16,11 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[339594:111050624] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[346996:116175996] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 192.168.67.0/24 -j ACCEPT -[22370:2983664] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT -[27:1620] -A OUTPUT -j LD -[27:1620] -A LD -j LOG -[27:1620] -A LD -j REJECT --reject-with icmp-port-unreachable +[22963:3061444] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[28:1680] -A OUTPUT -j LD +[28:1680] -A LD -j LOG +[28:1680] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Fri Jan 13 00:05:30 2012 +# Completed on Fri Jan 13 00:10:25 2012 ************************************************************ [ 8.328126] hub 7-0:1.0: USB hub found [ 8.332401] hub 7-0:1.0: 2 ports detected [ 10.481999] Adding 3911788k swap on /dev/sda1. Priority:-1 extents:1 across:3911788k [ 10.503344] EXT3 FS on sda3, internal journal [ 10.808825] kjournald starting. Commit interval 5 seconds [ 10.824805] EXT3 FS on sda5, internal journal [ 10.829849] EXT3-fs: mounted filesystem with ordered data mode. [ 11.223652] ADDRCONF(NETDEV_UP): eth0: link is not ready [ 13.448582] igb: eth0 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX [ 13.459853] ADDRCONF(NETDEV_CHANGE): eth0: link becomes ready [ 14.115343] fuse init (API version 7.13) [ 23.788098] eth0: no IPv6 routers present [ 216.927552] RPC: Registered udp transport module. [ 216.932954] RPC: Registered tcp transport module. [ 216.938313] RPC: Registered tcp NFSv4.1 backchannel transport module. [ 216.982521] Slow work thread pool: Starting up [ 216.987717] Slow work thread pool: Ready [ 216.992265] FS-Cache: Loaded [ 217.017201] FS-Cache: Netfs 'nfs' registered for caching [ 217.121764] svc: failed to register lockdv1 RPC service (errno 97). [ 294.991471] Adding 228556712k swap on /dev/sda5. Priority:-2 extents:1 across:228556712k [ 342.572042] ip_tables: (C) 2000-2006 Netfilter Core Team [ 3372.145397] IN= OUT=eth0 SRC=172.16.160.1 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=60306 DF PROTO=TCP SPT=35263 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 3375.164026] IN= OUT=eth0 SRC=172.16.160.1 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=60307 DF PROTO=TCP SPT=35263 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4078.577779] IN= OUT=eth0 SRC=172.16.160.1 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=46687 DF PROTO=TCP SPT=59648 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4081.596023] IN= OUT=eth0 SRC=172.16.160.1 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=46688 DF PROTO=TCP SPT=59648 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4081.633921] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.116.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=5023 DF PROTO=TCP SPT=55424 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4084.648114] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.116.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=5024 DF PROTO=TCP SPT=55424 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4266.031417] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14605 DF PROTO=TCP SPT=36631 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4269.048049] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14606 DF PROTO=TCP SPT=36631 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4269.946411] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=29937 DF PROTO=TCP SPT=36632 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4272.960056] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=29938 DF PROTO=TCP SPT=36632 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4273.003007] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=17020 DF PROTO=TCP SPT=36633 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4276.016044] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=17021 DF PROTO=TCP SPT=36633 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4773.422279] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=53892 DF PROTO=TCP SPT=36709 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4776.436068] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=53893 DF PROTO=TCP SPT=36709 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4777.333997] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=65465 DF PROTO=TCP SPT=36710 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4780.348121] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=65466 DF PROTO=TCP SPT=36710 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4780.389991] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=58826 DF PROTO=TCP SPT=36711 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4783.404067] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.94.183 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=58827 DF PROTO=TCP SPT=36711 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 5005.814762] IN= OUT=eth0 SRC=172.16.160.1 DST=1.2.3.4 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=25780 DF PROTO=TCP SPT=36624 DPT=7777 WINDOW=5840 RES=0x00 SYN URGP=0 [ 5299.573696] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.172.6 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=24639 DF PROTO=TCP SPT=49284 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 5467.850028] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.172.6 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=25656 DF PROTO=TCP SPT=49285 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 5767.824344] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.172.6 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=3104 DF PROTO=TCP SPT=49326 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 5937.295019] IN= OUT=eth0 SRC=172.16.160.1 DST=188.40.172.6 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=12339 DF PROTO=TCP SPT=49327 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 8706.343090] IN= OUT=eth0 SRC=172.16.160.1 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=40575 DF PROTO=TCP SPT=45482 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 8709.356028] IN= OUT=eth0 SRC=172.16.160.1 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=40576 DF PROTO=TCP SPT=45482 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 8709.399666] IN= OUT=eth0 SRC=172.16.160.1 DST=140.211.11.131 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14473 DF PROTO=TCP SPT=38009 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 8712.416031] IN= OUT=eth0 SRC=172.16.160.1 DST=140.211.11.131 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14474 DF PROTO=TCP SPT=38009 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11690.331420] IN= OUT=eth0 SRC=172.16.160.1 DST=66.194.253.26 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=53530 DF PROTO=TCP SPT=58448 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************