DC-Build-Header: maq 0.7.1-4 / Fri Jan 13 02:48:26 +0100 2012 Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on stremi-30.reims.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ maq 0.7.1-4 (amd64) 13 Jan 2012 02:49 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: maq Version: 0.7.1-4 Source Version: 0.7.1-4 Distribution: lsid64b Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Get:1 http://localhost sid Release.gpg [836 B] Get:2 http://localhost sid Release [188 kB] Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Get:3 http://localhost sid/main Sources [7544 kB] Get:4 http://localhost sid/main amd64 Packages [10.4 MB] Ign http://localhost sid/main Translation-en Fetched 18.2 MB in 3s (5421 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: clang cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'maq' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/maq/trunk/ Need to get 405 kB of source archives. Get:1 http://localhost/debian/ sid/main maq 0.7.1-4 (dsc) [1929 B] Get:2 http://localhost/debian/ sid/main maq 0.7.1-4 (tar) [398 kB] Get:3 http://localhost/debian/ sid/main maq 0.7.1-4 (diff) [5045 B] Fetched 405 kB in 0s (5184 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/maq-QjaHhn/resolver-Cni24m/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10821 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64b-855da2c8-c8d0-4cf2-bf25-0676dc3d2407/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev, zlib1g-dev, quilt Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev, zlib1g-dev, quilt dpkg-deb: building package `sbuild-build-depends-maq-dummy' in `/build/maq-QjaHhn/resolver-6wHi4d/apt_archive/sbuild-build-depends-maq-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install maq build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-maq-dummy zlib1g-dev 0 upgraded, 23 newly installed, 0 to remove and 10 not upgraded. Need to get 10.3 MB/10.3 MB of archives. After this operation, 27.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 libglib2.0-0 libxml2 libcroco3 libunistring0 bsdmainutils groff-base man-db libmagic1 file gettext-base autotools-dev cdbs html2text gettext intltool-debian po-debconf debhelper diffstat quilt zlib1g-dev sbuild-build-depends-maq-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-5 [38.2 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.30.2-4 [1844 kB] Get:4 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-5.1 [891 kB] Get:5 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-2 [122 kB] Get:6 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-5 [434 kB] Get:7 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:8 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:9 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-3 [1015 kB] Get:10 http://localhost/debian/ sid/main libmagic1 amd64 5.09-2 [246 kB] Get:11 http://localhost/debian/ sid/main file amd64 5.09-2 [52.0 kB] Get:12 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-5 [154 kB] Get:13 http://localhost/debian/ sid/main autotools-dev all 20110511.1 [73.8 kB] Get:14 http://localhost/debian/ sid/main cdbs all 0.4.100 [77.1 kB] Get:15 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:16 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-5 [2080 kB] Get:17 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:18 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu2 [224 kB] Get:19 http://localhost/debian/ sid/main debhelper all 8.9.14 [693 kB] Get:20 http://localhost/debian/ sid/main diffstat amd64 1.55-2 [29.9 kB] Get:21 http://localhost/debian/ sid/main quilt all 0.50-2 [381 kB] Get:22 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Preconfiguring packages ... Fetched 10.3 MB in 0s (41.7 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 10821 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20110511.1_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.14_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-2_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.50-2_all.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-maq-dummy. Unpacking sbuild-build-depends-maq-dummy (from .../sbuild-build-depends-maq-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-5) ... Setting up libpcre3 (8.12-4) ... Setting up libglib2.0-0 (2.30.2-4) ... No schema files found: doing nothing. Setting up libxml2 (2.7.8.dfsg-5.1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up gettext-base (0.18.1.1-5) ... Setting up autotools-dev (20110511.1) ... Setting up cdbs (0.4.100) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (8.9.14) ... Setting up diffstat (1.55-2) ... Setting up quilt (0.50-2) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up sbuild-build-depends-maq-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.8-2 Package versions: apt_0.8.15.9 apt-utils_0.8.15.9 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-4 bsdmainutils_8.2.3 bsdutils_1:2.20.1-1.1 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.100 clang_3.0-5 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.14 debian-archive-keyring_2010.08.28 debianutils_4.1 diffstat_1.55-2 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-9 gcc_4:4.6.2-4 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.09 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.1 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclang-common-dev_3.0-5 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-9 libllvm3.0_3.0-5 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.20.1-1.1 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libquadmath0_4.6.2-9 libreadline6_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.1 libxml2_2.7.8.dfsg-5.1 linux-libc-dev_3.1.8-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.20.1-1.1 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 quilt_0.50-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-maq-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Mar 13 03:41:22 2011 CET using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./maq_0.7.1-4.dsc dpkg-source: info: extracting maq in maq-0.7.1 dpkg-source: info: unpacking maq_0.7.1.orig.tar.gz dpkg-source: info: applying maq_0.7.1-4.diff.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: source package maq dpkg-buildpackage: source version 0.7.1-4 dpkg-source --before-build maq-0.7.1 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: *** No rule to make target `distclean'. make[1]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' make[1]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/maq-QjaHhn/maq-0.7.1/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* dh_clean rm -f debian/stamp-autotools-files dpkg-source -b maq-0.7.1 dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1) dpkg-source: info: using source format `1.0' dpkg-source: info: building maq using existing maq_0.7.1.orig.tar.gz dpkg-source: info: building maq in maq_0.7.1-4.diff.gz dpkg-source: warning: file maq-0.7.1/debian/README.source has no final newline (either original or modified version) dpkg-source: info: building maq in maq_0.7.1-4.dsc debian/rules build test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' cd . && QUILT_PATCHES=/build/maq-QjaHhn/maq-0.7.1/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 10_prevent_-64_option.patch patching file configure.ac Applying patch 20_prevent_-64_option.patch patching file configure Now at patch 20_prevent_-64_option.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi make[1]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/maq-QjaHhn/maq-0.7.1/./configure mkdir -p . cd . && CFLAGS="-D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="" LDFLAGS="" /build/maq-QjaHhn/maq-0.7.1/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/maq" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' cd . && /bin/bash /build/maq-QjaHhn/maq-0.7.1/missing --run aclocal-1.10 /build/maq-QjaHhn/maq-0.7.1/missing: line 54: aclocal-1.10: command not found WARNING: `aclocal-1.10' is missing on your system. You should only need it if you modified `acinclude.m4' or `configure.ac'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/maq-QjaHhn/maq-0.7.1/missing --run automake-1.10 --gnu --ignore-deps /build/maq-QjaHhn/maq-0.7.1/missing: line 54: automake-1.10: command not found WARNING: `automake-1.10' is missing on your system. You should only need it if you modified `Makefile.am', `acinclude.m4' or `configure.ac'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/maq-QjaHhn/maq-0.7.1/missing --run autoconf /build/maq-QjaHhn/maq-0.7.1/missing: line 54: autoconf: command not found WARNING: `autoconf' is missing on your system. You should only need it if you modified `configure.ac'. You might want to install the `Autoconf' and `GNU m4' packages. Grab them from any GNU archive site. /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash /build/maq-QjaHhn/maq-0.7.1/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=${prefix}/lib/maq --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules build_alias=x86_64-linux-gnu CFLAGS=-D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall LDFLAGS= CPPFLAGS= CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall --no-create --no-recursion configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes configure: creating ./config.status configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules /bin/bash ./config.status config.status: creating Makefile config.status: creating config.h config.status: config.h is unchanged make[1]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' make[1]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' cd . && /bin/bash /build/maq-QjaHhn/maq-0.7.1/missing --run autoheader /build/maq-QjaHhn/maq-0.7.1/missing: line 54: autoheader: command not found WARNING: `autoheader' is missing on your system. You should only need it if you modified `acconfig.h' or `configure.ac'. You might want to install the `Autoconf' and `GNU m4' packages. Grab them from any GNU archive site. rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged /usr/bin/make all-am make[2]: Entering directory `/build/maq-QjaHhn/maq-0.7.1' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c main.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c const.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c seq.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c bfa.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o read.o read.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c fasta2bfa.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c fastq2bfq.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o merge.o merge.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o match_aux.o match_aux.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o match.o match.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o sort_mapping.o sort_mapping.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o assemble.o assemble.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' assemble.cc:106:63: warning: '&' within '|' [-Wbitwise-op-parentheses] if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff; ~ ~~~~^~~~~~~~~ assemble.cc:106:63: note: place parentheses around the '&' expression to silence this warning if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff; ^ ( ) 1 warning generated. g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o pileup.o pileup.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o mapcheck.o mapcheck.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from mapcheck.cc:11: ./stdhash.hh:415:13: error: use of undeclared identifier 'direct_insert_aux' int ret = direct_insert_aux(key, this->n_capacity, this->keys, this->flags, &i); ^ this-> mapcheck.cc:24:10: note: in instantiation of member function 'hash_set_misc::insert' requested here hash->insert((bit64_t)seqid<<32 | (pos-1)); ^ ./stdhash.hh:295:13: note: must qualify identifier to find this declaration in dependent base class inline int direct_insert_aux(const keytype_t &key, hashint_t m, keytype_t *K, __lh3_flag_t *F, hashint_t *i) { ^ 1 error generated. make[2]: *** [mapcheck.o] Error 1 make[2]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' make[1]: *** [all] Error 2 make[1]: Leaving directory `/build/maq-QjaHhn/maq-0.7.1' make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120113-0249 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64b-855da2c8-c8d0-4cf2-bf25-0676dc3d2407/build/maq-QjaHhn Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 2256 Build-Time: 14 Distribution: lsid64b Fail-Stage: build Install-Time: 7 Job: maq_0.7.1-4 Package: maq Package-Time: 33 Source-Version: 0.7.1-4 Space: 2256 Status: attempted Version: 0.7.1-4 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120113-0249 Build needed 00:00:33, 2256k disc space DC-Message: Failed, but took only 94.363779. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on stremi-30.reims.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ maq 0.7.1-4 (amd64) 13 Jan 2012 02:53 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: maq Version: 0.7.1-4 Source Version: 0.7.1-4 Distribution: lsid64b Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Get:1 http://localhost sid Release.gpg [836 B] Get:2 http://localhost sid Release [188 kB] Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Get:3 http://localhost sid/main Sources [7544 kB] Get:4 http://localhost sid/main amd64 Packages [10.4 MB] Ign http://localhost sid/main Translation-en Fetched 18.2 MB in 6s (2848 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: clang cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'maq' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/maq/trunk/ Need to get 405 kB of source archives. Get:1 http://localhost/debian/ sid/main maq 0.7.1-4 (dsc) [1929 B] Get:2 http://localhost/debian/ sid/main maq 0.7.1-4 (tar) [398 kB] Get:3 http://localhost/debian/ sid/main maq 0.7.1-4 (diff) [5045 B] Fetched 405 kB in 0s (21.0 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/maq-sRcdyk/resolver-SPoWFD/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 0 B/704 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10821 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64b-af47390b-eb61-4223-81e9-f0b1b0c776ce/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev, zlib1g-dev, quilt Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), autotools-dev, zlib1g-dev, quilt dpkg-deb: building package `sbuild-build-depends-maq-dummy' in `/build/maq-sRcdyk/resolver-oCCU15/apt_archive/sbuild-build-depends-maq-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install maq build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-maq-dummy zlib1g-dev 0 upgraded, 23 newly installed, 0 to remove and 10 not upgraded. Need to get 10.3 MB/10.3 MB of archives. After this operation, 27.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 libglib2.0-0 libxml2 libcroco3 libunistring0 bsdmainutils groff-base man-db libmagic1 file gettext-base autotools-dev cdbs html2text gettext intltool-debian po-debconf debhelper diffstat quilt zlib1g-dev sbuild-build-depends-maq-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-5 [38.2 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.30.2-4 [1844 kB] Get:4 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-5.1 [891 kB] Get:5 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-2 [122 kB] Get:6 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-5 [434 kB] Get:7 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:8 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:9 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-3 [1015 kB] Get:10 http://localhost/debian/ sid/main libmagic1 amd64 5.09-2 [246 kB] Get:11 http://localhost/debian/ sid/main file amd64 5.09-2 [52.0 kB] Get:12 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-5 [154 kB] Get:13 http://localhost/debian/ sid/main autotools-dev all 20110511.1 [73.8 kB] Get:14 http://localhost/debian/ sid/main cdbs all 0.4.100 [77.1 kB] Get:15 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:16 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-5 [2080 kB] Get:17 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:18 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu2 [224 kB] Get:19 http://localhost/debian/ sid/main debhelper all 8.9.14 [693 kB] Get:20 http://localhost/debian/ sid/main diffstat amd64 1.55-2 [29.9 kB] Get:21 http://localhost/debian/ sid/main quilt all 0.50-2 [381 kB] Get:22 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Preconfiguring packages ... Fetched 10.3 MB in 0s (41.8 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 10821 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20110511.1_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.14_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-2_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.50-2_all.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-maq-dummy. Unpacking sbuild-build-depends-maq-dummy (from .../sbuild-build-depends-maq-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-5) ... Setting up libpcre3 (8.12-4) ... Setting up libglib2.0-0 (2.30.2-4) ... No schema files found: doing nothing. Setting up libxml2 (2.7.8.dfsg-5.1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up gettext-base (0.18.1.1-5) ... Setting up autotools-dev (20110511.1) ... Setting up cdbs (0.4.100) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (8.9.14) ... Setting up diffstat (1.55-2) ... Setting up quilt (0.50-2) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up sbuild-build-depends-maq-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.8-2 Package versions: apt_0.8.15.9 apt-utils_0.8.15.9 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-4 bsdmainutils_8.2.3 bsdutils_1:2.20.1-1.1 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.100 clang_3.0-5 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.14 debian-archive-keyring_2010.08.28 debianutils_4.1 diffstat_1.55-2 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-9 gcc_4:4.6.2-4 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.09 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.1 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclang-common-dev_3.0-5 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-9 libllvm3.0_3.0-5 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.20.1-1.1 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libquadmath0_4.6.2-9 libreadline6_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.1 libxml2_2.7.8.dfsg-5.1 linux-libc-dev_3.1.8-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.20.1-1.1 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 quilt_0.50-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-maq-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Mar 13 03:41:22 2011 CET using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./maq_0.7.1-4.dsc dpkg-source: info: extracting maq in maq-0.7.1 dpkg-source: info: unpacking maq_0.7.1.orig.tar.gz dpkg-source: info: applying maq_0.7.1-4.diff.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: source package maq dpkg-buildpackage: source version 0.7.1-4 dpkg-source --before-build maq-0.7.1 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: *** No rule to make target `distclean'. make[1]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' make[1]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/maq-sRcdyk/maq-0.7.1/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* dh_clean rm -f debian/stamp-autotools-files dpkg-source -b maq-0.7.1 dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1) dpkg-source: info: using source format `1.0' dpkg-source: info: building maq using existing maq_0.7.1.orig.tar.gz dpkg-source: info: building maq in maq_0.7.1-4.diff.gz dpkg-source: warning: file maq-0.7.1/debian/README.source has no final newline (either original or modified version) dpkg-source: info: building maq in maq_0.7.1-4.dsc debian/rules build test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' cd . && QUILT_PATCHES=/build/maq-sRcdyk/maq-0.7.1/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 10_prevent_-64_option.patch patching file configure.ac Applying patch 20_prevent_-64_option.patch patching file configure Now at patch 20_prevent_-64_option.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi make[1]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/maq-sRcdyk/maq-0.7.1/./configure mkdir -p . cd . && CFLAGS="-D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="" LDFLAGS="" /build/maq-sRcdyk/maq-0.7.1/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/maq" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' cd . && /bin/bash /build/maq-sRcdyk/maq-0.7.1/missing --run aclocal-1.10 /build/maq-sRcdyk/maq-0.7.1/missing: line 54: aclocal-1.10: command not found WARNING: `aclocal-1.10' is missing on your system. You should only need it if you modified `acinclude.m4' or `configure.ac'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/maq-sRcdyk/maq-0.7.1/missing --run automake-1.10 --gnu --ignore-deps /build/maq-sRcdyk/maq-0.7.1/missing: line 54: automake-1.10: command not found WARNING: `automake-1.10' is missing on your system. You should only need it if you modified `Makefile.am', `acinclude.m4' or `configure.ac'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/maq-sRcdyk/maq-0.7.1/missing --run autoconf /build/maq-sRcdyk/maq-0.7.1/missing: line 54: autoconf: command not found WARNING: `autoconf' is missing on your system. You should only need it if you modified `configure.ac'. You might want to install the `Autoconf' and `GNU m4' packages. Grab them from any GNU archive site. /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash /build/maq-sRcdyk/maq-0.7.1/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=${prefix}/lib/maq --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules build_alias=x86_64-linux-gnu CFLAGS=-D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall LDFLAGS= CPPFLAGS= CXXFLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall --no-create --no-recursion configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes configure: creating ./config.status configure: WARNING: Unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules /bin/bash ./config.status config.status: creating Makefile config.status: creating config.h config.status: config.h is unchanged make[1]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' make[1]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' cd . && /bin/bash /build/maq-sRcdyk/maq-0.7.1/missing --run autoheader /build/maq-sRcdyk/maq-0.7.1/missing: line 54: autoheader: command not found WARNING: `autoheader' is missing on your system. You should only need it if you modified `acconfig.h' or `configure.ac'. You might want to install the `Autoconf' and `GNU m4' packages. Grab them from any GNU archive site. rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged /usr/bin/make all-am make[2]: Entering directory `/build/maq-sRcdyk/maq-0.7.1' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c main.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c const.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c seq.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c bfa.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o read.o read.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c fasta2bfa.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' gcc -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c fastq2bfq.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o merge.o merge.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o match_aux.o match_aux.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o match.o match.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o sort_mapping.o sort_mapping.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o assemble.o assemble.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' assemble.cc:106:63: warning: '&' within '|' [-Wbitwise-op-parentheses] if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff; ~ ~~~~^~~~~~~~~ assemble.cc:106:63: note: place parentheses around the '&' expression to silence this warning if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff; ^ ( ) 1 warning generated. g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o pileup.o pileup.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' g++ -DHAVE_CONFIG_H -I. -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -D_LARGEFILE64_SOURCE -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c -o mapcheck.o mapcheck.cc clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from mapcheck.cc:11: ./stdhash.hh:415:13: error: use of undeclared identifier 'direct_insert_aux' int ret = direct_insert_aux(key, this->n_capacity, this->keys, this->flags, &i); ^ this-> mapcheck.cc:24:10: note: in instantiation of member function 'hash_set_misc::insert' requested here hash->insert((bit64_t)seqid<<32 | (pos-1)); ^ ./stdhash.hh:295:13: note: must qualify identifier to find this declaration in dependent base class inline int direct_insert_aux(const keytype_t &key, hashint_t m, keytype_t *K, __lh3_flag_t *F, hashint_t *i) { ^ 1 error generated. make[2]: *** [mapcheck.o] Error 1 make[2]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' make[1]: *** [all] Error 2 make[1]: Leaving directory `/build/maq-sRcdyk/maq-0.7.1' make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120113-0253 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64b-af47390b-eb61-4223-81e9-f0b1b0c776ce/build/maq-sRcdyk Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 2256 Build-Time: 14 Distribution: lsid64b Fail-Stage: build Install-Time: 6 Job: maq_0.7.1-4 Package: maq Package-Time: 36 Source-Version: 0.7.1-4 Space: 2256 Status: attempted Version: 0.7.1-4 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120113-0253 Build needed 00:00:36, 2256k disc space DC-Build-Status: Failed 311.836972s ### Content of /var/log/daemon.log ### Jan 12 21:04:01 stremi-30 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Jan 12 21:04:03 stremi-30 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:22 stremi-30 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:33 stremi-30 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:42 stremi-30 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.xz is taking too long Jan 12 21:04:44 stremi-30 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:05:03 stremi-30 approx: Concurrent download of debian/dists/sid/Release is taking too long Jan 12 21:05:38 stremi-30 approx: Concurrent download of debian/dists/sid/Release is taking too long Jan 13 01:25:26 stremi-30 approx: Nethttpd: Broken pipe Jan 13 01:25:52 stremi-30 approx: Nethttpd: Broken pipe Jan 13 01:26:16 stremi-30 approx: Nethttpd: Broken pipe Jan 13 01:32:53 stremi-30 approx: Nethttpd: Broken pipe Jan 13 01:32:53 stremi-30 approx: Nethttpd: Broken pipe Jan 13 01:32:53 stremi-30 approx: Nethttpd: Broken pipe Jan 13 01:32:53 stremi-30 approx: Nethttpd: Broken pipe ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 311.836972 versus expected 35 (r/m: 7.90962777142857 ; m: 35.0) DC-Build-Network: USED. See /tmp/rulesafter.ip6BaX ! ************************************************************ # Generated by iptables-save v1.4.8 on Fri Jan 13 02:53:38 2012 *filter :INPUT ACCEPT [6190751:37914230486] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [3754213:34073678340] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [8:480] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [429297:136210080] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 192.168.67.0/24 -j ACCEPT [41769:5532924] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [1349:80940] -A OUTPUT -j LD [1349:80940] -A LD -j LOG [1349:80940] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Fri Jan 13 02:53:38 2012 ************************************************************ --- /tmp/rulesbefore.ZV6O1g 2012-01-13 02:48:26.478176375 +0100 +++ /tmp/rulesafter.ip6BaX 2012-01-13 02:53:38.326761381 +0100 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Fri Jan 13 02:48:26 2012 +# Generated by iptables-save v1.4.8 on Fri Jan 13 02:53:38 2012 *filter -:INPUT ACCEPT [6104477:37189251918] +:INPUT ACCEPT [6190751:37914230486] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[3702078:33373491061] -A OUTPUT -o lo -j ACCEPT +[3754213:34073678340] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [8:480] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,11 +16,11 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[425010:134973478] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[429297:136210080] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 192.168.67.0/24 -j ACCEPT -[41117:5447080] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[41769:5532924] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [1349:80940] -A OUTPUT -j LD [1349:80940] -A LD -j LOG [1349:80940] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Fri Jan 13 02:48:26 2012 +# Completed on Fri Jan 13 02:53:38 2012 ************************************************************ [10806.054947] [] ? int_signal+0x12/0x17 [10806.060931] INFO: task gcc:5328 blocked for more than 120 seconds. [10806.067882] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. [10806.076708] gcc D ffff88093dae69f0 0 5328 5327 0x00000000 [10806.084459] ffff88093dae69f0 0000000000000086 ffff88028afc5998 ffff88028afc5994 [10806.092851] ffffffff810c78a0 ffffea000920f638 000000000000f9e0 ffff88028afc5fd8 [10806.101236] 0000000000015780 0000000000015780 ffff88027ecf0e20 ffff88027ecf1118 [10806.109621] Call Trace: [10806.112386] [] ? zone_statistics+0x3c/0x5d [10806.118866] [] ? current_io_context+0x1b/0x29 [10806.125629] [] ? io_schedule+0x73/0xb7 [10806.131711] [] ? get_request_wait+0xf0/0x188 [10806.138375] [] ? autoremove_wake_function+0x0/0x2e [10806.145621] [] ? __make_request+0x2f7/0x428 [10806.152186] [] ? generic_make_request+0x299/0x2f9 [10806.159337] [] ? submit_bio+0xd6/0xf2 [10806.165320] [] ? end_swap_bio_read+0x0/0x60 [10806.171887] [] ? bio_alloc+0x10/0x1f [10806.177773] [] ? get_swap_bio+0x4a/0x9a [10806.183949] [] ? swap_readpage+0x4f/0x53 [10806.190223] [] ? read_swap_cache_async+0xb3/0xf3 [10806.197274] [] ? swapin_readahead+0x57/0x98 [10806.203840] [] ? handle_mm_fault+0x47f/0x80f [10806.210504] [] ? do_page_fault+0x2e0/0x2fc [10806.216971] [] ? page_fault+0x25/0x30 [10806.222956] [] ? copy_user_generic_string+0x2d/0x40 [10806.230299] [] ? save_i387_xstate+0x12f/0x1b2 [10806.237062] [] ? do_notify_resume+0x289/0x73f [10806.243823] [] ? sys_wait4+0xa0/0xb0 [10806.249708] [] ? int_signal+0x12/0x17 [16868.468356] IN= OUT=eth0 SRC=172.16.160.30 DST=137.208.57.38 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=17094 DF PROTO=TCP SPT=53836 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [16871.484032] IN= OUT=eth0 SRC=172.16.160.30 DST=137.208.57.38 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=17095 DF PROTO=TCP SPT=53836 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [16871.503091] IN= OUT=eth0 SRC=172.16.160.30 DST=84.237.118.144 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=42093 DF PROTO=TCP SPT=35586 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [16874.520036] IN= OUT=eth0 SRC=172.16.160.30 DST=84.237.118.144 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=42094 DF PROTO=TCP SPT=35586 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [17505.017539] bug-overflow[25063]: segfault at 80093c ip 0000000000400458 sp 00007fff0a85ba90 error 6 in bug-overflow[400000+1000] [17505.063716] bug-div0[25138] trap divide error ip:4004bc sp:7fff8c92c800 error:0 in bug-div0[400000+1000] [19658.407059] IN= OUT=eth0 SRC=172.16.160.30 DST=213.199.181.90 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=38323 DF PROTO=TCP SPT=56140 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [19661.424024] IN= OUT=eth0 SRC=172.16.160.30 DST=213.199.181.90 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=38324 DF PROTO=TCP SPT=56140 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [19661.443321] IN= OUT=eth0 SRC=172.16.160.30 DST=74.125.230.80 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=42516 DF PROTO=TCP SPT=41588 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [19664.460034] IN= OUT=eth0 SRC=172.16.160.30 DST=74.125.230.80 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=42517 DF PROTO=TCP SPT=41588 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [19664.478989] IN= OUT=eth0 SRC=172.16.160.30 DST=72.30.2.43 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=29054 DF PROTO=TCP SPT=49083 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [19667.496025] IN= OUT=eth0 SRC=172.16.160.30 DST=72.30.2.43 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=29055 DF PROTO=TCP SPT=49083 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20377.725561] IN= OUT=eth0 SRC=172.16.160.30 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=33205 DF PROTO=TCP SPT=40621 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20380.744695] IN= OUT=eth0 SRC=172.16.160.30 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=33206 DF PROTO=TCP SPT=40621 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20687.188502] IN= OUT=eth0 SRC=172.16.160.30 DST=128.30.52.37 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=22059 DF PROTO=TCP SPT=35007 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20690.204022] IN= OUT=eth0 SRC=172.16.160.30 DST=128.30.52.37 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=22060 DF PROTO=TCP SPT=35007 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20972.165533] IN= OUT=eth0 SRC=172.16.160.30 DST=74.125.230.80 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=38336 DF PROTO=TCP SPT=43453 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20975.184191] IN= OUT=eth0 SRC=172.16.160.30 DST=74.125.230.80 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=38337 DF PROTO=TCP SPT=43453 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20975.366119] IN= OUT=eth0 SRC=172.16.160.30 DST=74.125.230.84 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=23491 DF PROTO=TCP SPT=43486 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [20978.384025] IN= OUT=eth0 SRC=172.16.160.30 DST=74.125.230.84 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=23492 DF PROTO=TCP SPT=43486 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************