DC-Build-Header: adios 1.3-10 / Sat Jun 23 16:26:05 +0000 2012 DC-Task: logfile:/tmp/adios_1.3-10_unstable_clang.log version:1.3-10 chroot:unstable modes:binary-only:clang source:adios architecture:any esttime:185 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang adios_1.3-10' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-87-229.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ adios 1.3-10 (amd64) 23 Jun 2012 16:26 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: adios Version: 1.3-10 Source Version: 1.3-10 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/adios-dzGF5b/adios-1.3' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/adios-dzGF5b' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-6616118d-c98d-41b5-81c5-07a0eb3a2f3d' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:7 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:8 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:9 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:10 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:11 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Fetched 274 kB in 4s (60.2 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... Need to get 917 kB of source archives. Get:1 http://localhost/debian/ unstable/main adios 1.3-10 (dsc) [1851 B] Get:2 http://localhost/debian/ unstable/main adios 1.3-10 (tar) [907 kB] Get:3 http://localhost/debian/ unstable/main adios 1.3-10 (diff) [7756 B] Fetched 917 kB in 0s (2947 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (30.2 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-JbYlls/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.1.3~), libnetcdf-dev, gfortran, libhdf5-mpi-dev | libhdf5-dev, libmxml-dev, python-all-dev, mpi-default-dev, lustre-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.1.3~), libnetcdf-dev, gfortran, libhdf5-mpi-dev, libmxml-dev, python-all-dev, mpi-default-dev, lustre-dev dpkg-deb: building package `sbuild-build-depends-adios-dummy' in `/«BUILDDIR»/resolver-78aNpo/apt_archive/sbuild-build-depends-adios-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install adios build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bsdmainutils debhelper file gettext gettext-base gfortran gfortran-4.7 groff-base hdf5-helpers html2text intltool-debian libasprintf0c2 libcf0 libcroco3 libcurl3-gnutls libdb4.8 libexpat1 libexpat1-dev libgcrypt11 libgettextpo0 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libncursesw5 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpcre3 libpipeline1 libpython2.6 libpython2.7 librtmp0 libsasl2-2 libsqlite3-0 libssh2-1 libssl-dev libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 lustre-dev lustre-utils man-db mime-support mpi-default-dev openmpi-common po-debconf python python-all python-all-dev python-dev python-minimal python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.7-multilib gfortran-4.7-doc libgfortran3-dbg groff rng-tools krb5-doc krb5-user libhdf5-doc netcdf-bin netcdf-doc less www-browser libmail-box-perl python-doc python-tk python2.6-doc binfmt-support python2.7-doc Recommended packages: curl wget lynx-cur autopoint ca-certificates libglib2.0-data shared-mime-info krb5-locales libgpm2 pkg-config libsasl2-modules libssl-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: adduser bsdmainutils debhelper file gettext gettext-base gfortran gfortran-4.7 groff-base hdf5-helpers html2text intltool-debian libasprintf0c2 libcf0 libcroco3 libcurl3-gnutls libdb4.8 libexpat1 libexpat1-dev libgcrypt11 libgettextpo0 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libncursesw5 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpcre3 libpipeline1 libpython2.6 libpython2.7 librtmp0 libsasl2-2 libsqlite3-0 libssh2-1 libssl-dev libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 lustre-dev lustre-utils man-db mime-support mpi-default-dev openmpi-common po-debconf python python-all python-all-dev python-dev python-minimal python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-adios-dummy zlib1g-dev 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB/79.8 MB of archives. After this operation, 220 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libncursesw5 amd64 5.9-9 [141 kB] Get:2 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:3 http://localhost/debian/ unstable/main libssl1.0.0 amd64 1.0.1c-3 [1211 kB] Get:4 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:5 http://localhost/debian/ unstable/main libgpg-error0 amd64 1.10-3 [66.8 kB] Get:6 http://localhost/debian/ unstable/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:7 http://localhost/debian/ unstable/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:8 http://localhost/debian/ unstable/main libtasn1-3 amd64 2.13-2 [67.7 kB] Get:9 http://localhost/debian/ unstable/main libgnutls26 amd64 2.12.20-1 [616 kB] Get:10 http://localhost/debian/ unstable/main libkeyutils1 amd64 1.5.5-2 [9300 B] Get:11 http://localhost/debian/ unstable/main libkrb5support0 amd64 1.10.1+dfsg-1 [49.0 kB] Get:12 http://localhost/debian/ unstable/main libk5crypto3 amd64 1.10.1+dfsg-1 [112 kB] Get:13 http://localhost/debian/ unstable/main libkrb5-3 amd64 1.10.1+dfsg-1 [393 kB] Get:14 http://localhost/debian/ unstable/main libgssapi-krb5-2 amd64 1.10.1+dfsg-1 [147 kB] Get:15 http://localhost/debian/ unstable/main libidn11 amd64 1.25-2 [178 kB] Get:16 http://localhost/debian/ unstable/main libsasl2-2 amd64 2.1.25.dfsg1-4+b1 [120 kB] Get:17 http://localhost/debian/ unstable/main libldap-2.4-2 amd64 2.4.28-1.3 [240 kB] Get:18 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:19 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:20 http://localhost/debian/ unstable/main libsqlite3-0 amd64 3.7.13-1 [455 kB] Get:21 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:22 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:23 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:24 http://localhost/debian/ unstable/main librtmp0 amd64 2.4+20111222.git4e06e21-1 [62.3 kB] Get:25 http://localhost/debian/ unstable/main libssh2-1 amd64 1.4.2-1 [79.0 kB] Get:26 http://localhost/debian/ unstable/main libcurl3-gnutls amd64 7.26.0-1 [321 kB] Get:27 http://localhost/debian/ unstable/main libexpat1 amd64 2.1.0-1 [141 kB] Get:28 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:29 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:30 http://localhost/debian/ unstable/main libgfortran3 amd64 4.7.1-1 [352 kB] Get:31 http://localhost/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB] Get:32 http://localhost/debian/ unstable/main libdb4.8 amd64 4.8.30-11 [694 kB] Get:33 http://localhost/debian/ unstable/main adduser all 3.113+nmu3 [264 kB] Get:34 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:35 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:36 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:37 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:38 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:39 http://localhost/debian/ unstable/main mime-support all 3.52-1 [35.5 kB] Get:40 http://localhost/debian/ unstable/main python2.7-minimal amd64 2.7.3-1 [1770 kB] Get:41 http://localhost/debian/ unstable/main python2.7 amd64 2.7.3-1 [2726 kB] Get:42 http://localhost/debian/ unstable/main python-minimal all 2.7.3~rc2-1 [40.4 kB] Get:43 http://localhost/debian/ unstable/main python all 2.7.3~rc2-1 [179 kB] Get:44 http://localhost/debian/ unstable/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:45 http://localhost/debian/ unstable/main python2.6 amd64 2.6.7-4 [2483 kB] Get:46 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:47 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:48 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:49 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:50 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:51 http://localhost/debian/ unstable/main gfortran-4.7 amd64 4.7.1-1 [6176 kB] Get:52 http://localhost/debian/ unstable/main gfortran amd64 4:4.7.0-6 [1138 B] Get:53 http://localhost/debian/ unstable/main hdf5-helpers amd64 1.8.8-9 [32.5 kB] Get:54 http://localhost/debian/ unstable/main libcf0 amd64 1:4.1.3-6 [50.1 kB] Get:55 http://localhost/debian/ unstable/main libexpat1-dev amd64 2.1.0-1 [229 kB] Get:56 http://localhost/debian/ unstable/main libjpeg8-dev amd64 8d-1 [242 kB] Get:57 http://localhost/debian/ unstable/main libmxml1 amd64 2.6-2 [28.0 kB] Get:58 http://localhost/debian/ unstable/main libmxml-dev amd64 2.6-2 [62.3 kB] Get:59 http://localhost/debian/ unstable/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:60 http://localhost/debian/ unstable/main libnuma1 amd64 2.0.8~rc3-1 [33.4 kB] Get:61 http://localhost/debian/ unstable/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:62 http://localhost/debian/ unstable/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:63 http://localhost/debian/ unstable/main libhdf5-openmpi-7 amd64 1.8.8-9 [1459 kB] Get:64 http://localhost/debian/ unstable/main libnetcdfc7 amd64 1:4.1.3-6 [355 kB] Get:65 http://localhost/debian/ unstable/main libnetcdff5 amd64 1:4.1.3-6 [139 kB] Get:66 http://localhost/debian/ unstable/main libnetcdfc++4 amd64 1:4.1.3-6 [64.8 kB] Get:67 http://localhost/debian/ unstable/main libnetcdf-dev amd64 1:4.1.3-6 [655 kB] Get:68 http://localhost/debian/ unstable/main libpython2.6 amd64 2.6.7-4 [1087 kB] Get:69 http://localhost/debian/ unstable/main libpython2.7 amd64 2.7.3-1 [1212 kB] Get:70 http://localhost/debian/ unstable/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] Get:71 http://localhost/debian/ unstable/main libssl-dev amd64 1.0.1c-3 [1696 kB] Get:72 http://localhost/debian/ unstable/main lustre-utils amd64 1.8.5+dfsg-3 [795 kB] Get:73 http://localhost/debian/ unstable/main lustre-dev amd64 1.8.5+dfsg-3 [6011 kB] Get:74 http://localhost/debian/ unstable/main python-all all 2.7.3~rc2-1 [880 B] Get:75 http://localhost/debian/ unstable/main python2.7-dev amd64 2.7.3-1 [22.3 MB] Get:76 http://localhost/debian/ unstable/main python-dev all 2.7.3~rc2-1 [912 B] Get:77 http://localhost/debian/ unstable/main python2.6-dev amd64 2.6.7-4 [4832 kB] Get:78 http://localhost/debian/ unstable/main python-all-dev all 2.7.3~rc2-1 [894 B] Get:79 http://localhost/debian/ unstable/main openmpi-common all 1.4.5-1 [101 kB] Get:80 http://localhost/debian/ unstable/main libibverbs-dev amd64 1.1.6-1 [84.8 kB] Get:81 http://localhost/debian/ unstable/main libopenmpi-dev amd64 1.4.5-1 [2778 kB] Get:82 http://localhost/debian/ unstable/main libhdf5-openmpi-dev amd64 1.8.8-9 [2607 kB] Get:83 http://localhost/debian/ unstable/main mpi-default-dev amd64 1.0.1 [3604 B] Get:84 http://localhost/debian/ unstable/main libhdf5-mpi-dev amd64 1.8.8-9 [24.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 3s (20.2 MB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-9_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-1_amd64.deb) ... Selecting previously unselected package libkeyutils1:amd64. Unpacking libkeyutils1:amd64 (from .../libkeyutils1_1.5.5-2_amd64.deb) ... Selecting previously unselected package libkrb5support0:amd64. Unpacking libkrb5support0:amd64 (from .../libkrb5support0_1.10.1+dfsg-1_amd64.deb) ... Selecting previously unselected package libk5crypto3:amd64. Unpacking libk5crypto3:amd64 (from .../libk5crypto3_1.10.1+dfsg-1_amd64.deb) ... Selecting previously unselected package libkrb5-3:amd64. Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-1_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-1_amd64.deb) ... Selecting previously unselected package libidn11:amd64. Unpacking libidn11:amd64 (from .../libidn11_1.25-2_amd64.deb) ... Selecting previously unselected package libsasl2-2:amd64. Unpacking libsasl2-2:amd64 (from .../libsasl2-2_2.1.25.dfsg1-4+b1_amd64.deb) ... Selecting previously unselected package libldap-2.4-2:amd64. Unpacking libldap-2.4-2:amd64 (from .../libldap-2.4-2_2.4.28-1.3_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. 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Unpacking libhdf5-mpi-dev (from .../libhdf5-mpi-dev_1.8.8-9_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-adios-dummy. Unpacking sbuild-build-depends-adios-dummy (from .../sbuild-build-depends-adios-dummy.deb) ... Setting up libncursesw5:amd64 (5.9-9) ... Setting up libpipeline1:amd64 (1.2.1-1) ... Setting up libssl1.0.0:amd64 (1.0.1c-3) ... Setting up libasprintf0c2:amd64 (0.18.1.1-9) ... Setting up libgpg-error0:amd64 (1.10-3) ... Setting up libgcrypt11:amd64 (1.5.0-3) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-1) ... Setting up libkeyutils1:amd64 (1.5.5-2) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-1) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-4+b1) ... Setting up libldap-2.4-2:amd64 (2.4.28-1.3) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.5-1) ... Setting up librtmp0:amd64 (2.4+20111222.git4e06e21-1) ... Setting up libssh2-1:amd64 (1.4.2-1) ... Setting up libcurl3-gnutls:amd64 (7.26.0-1) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up libgfortran3:amd64 (4.7.1-1) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libdb4.8:amd64 (4.8.30-11) ... Setting up adduser (3.113+nmu3) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7-minimal (2.7.3-1) ... Setting up python2.7 (2.7.3-1) ... Setting up python-minimal (2.7.3~rc2-1) ... Setting up python (2.7.3~rc2-1) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up python2.6 (2.6.7-4) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up gfortran-4.7 (4.7.1-1) ... Setting up gfortran (4:4.7.0-6) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up hdf5-helpers (1.8.8-9) ... Setting up libcf0 (1:4.1.3-6) ... Setting up libexpat1-dev (2.1.0-1) ... Setting up libjpeg8-dev:amd64 (8d-1) ... Setting up libmxml1 (2.6-2) ... Setting up libmxml-dev (2.6-2) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc3-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up libhdf5-openmpi-7 (1.8.8-9) ... Setting up libnetcdfc7 (1:4.1.3-6) ... Setting up libnetcdff5 (1:4.1.3-6) ... Setting up libnetcdfc++4 (1:4.1.3-6) ... Setting up libnetcdf-dev (1:4.1.3-6) ... Setting up libpython2.6 (2.6.7-4) ... Setting up libpython2.7 (2.7.3-1) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libssl-dev (1.0.1c-3) ... Setting up lustre-utils (1.8.5+dfsg-3) ... Setting up lustre-dev (1.8.5+dfsg-3) ... Setting up python-all (2.7.3~rc2-1) ... Setting up python2.7-dev (2.7.3-1) ... Setting up python-dev (2.7.3~rc2-1) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-all-dev (2.7.3~rc2-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up libibverbs-dev (1.1.6-1) ... Setting up libopenmpi-dev (1.4.5-1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up libhdf5-openmpi-dev (1.8.8-9) ... Setting up mpi-default-dev (1.0.1) ... Setting up libhdf5-mpi-dev (1.8.8-9) ... Setting up sbuild-build-depends-adios-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: adduser_3.113+nmu3 apt_0.9.7 base-files_6.11 base-passwd_3.5.25 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gfortran_4:4.7.0-6 gfortran-4.7_4.7.1-1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 hdf5-helpers_1.8.8-9 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcf0_1:4.1.3-6 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libcurl3-gnutls_7.26.0-1 libdb4.8_4.8.30-11 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-1 libgomp1_4.7.1-1 libgpg-error0_1.10-3 libgssapi-krb5-2_1.10.1+dfsg-1 libhdf5-mpi-dev_1.8.8-9 libhdf5-openmpi-7_1.8.8-9 libhdf5-openmpi-dev_1.8.8-9 libibverbs-dev_1.1.6-1 libibverbs1_1.1.6-1 libidn11_1.25-2 libitm1_4.7.1-1 libjpeg8_8d-1 libjpeg8-dev_8d-1 libk5crypto3_1.10.1+dfsg-1 libkeyutils1_1.5.5-2 libkrb5-3_1.10.1+dfsg-1 libkrb5support0_1.10.1+dfsg-1 libldap-2.4-2_2.4.28-1.3 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libmxml-dev_2.6-2 libmxml1_2.6-2 libncurses5_5.9-9 libncursesw5_5.9-9 libnetcdf-dev_1:4.1.3-6 libnetcdfc++4_1:4.1.3-6 libnetcdfc7_1:4.1.3-6 libnetcdff5_1:4.1.3-6 libnuma1_2.0.8~rc3-1 libopenmpi-dev_1.4.5-1 libopenmpi1.3_1.4.5-1 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpython2.6_2.6.7-4 libpython2.7_2.7.3-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 librtmp0_2.4+20111222.git4e06e21-1 libsasl2-2_2.1.25.dfsg1-4+b1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsqlite3-0_3.7.13-1 libss2_1.42.4-3 libssh2-1_1.4.2-1 libssl-dev_1.0.1c-3 libssl1.0.0_1.0.1c-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libtorque2_2.4.16+dfsg-1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 lustre-dev_1.8.5+dfsg-3 lustre-utils_1.8.5+dfsg-3 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-5 mpi-default-dev_1.0.1 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 openmpi-common_1.4.5-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 python_2.7.3~rc2-1 python-all_2.7.3~rc2-1 python-all-dev_2.7.3~rc2-1 python-dev_2.7.3~rc2-1 python-minimal_2.7.3~rc2-1 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.3-1 python2.7-dev_2.7.3-1 python2.7-minimal_2.7.3-1 readline-common_6.2-8 sbuild-build-depends-adios-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Mar 23 14:11:19 2012 UTC using RSA key ID 5127742C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./adios_1.3-10.dsc dpkg-source: info: extracting adios in adios-1.3 dpkg-source: info: unpacking adios_1.3.orig.tar.gz dpkg-source: info: unpacking adios_1.3-10.debian.tar.gz dpkg-source: info: applying sh4.patch dpkg-source: info: applying mpi_in_place.patch dpkg-source: info: applying nompi_flag.patch dpkg-source: info: applying security.patch dpkg-source: warning: unexpected end of diff `adios-1.3/debian/patches/errno.patch' dpkg-source: info: applying errno.patch dpkg-source: info: applying netcdf-fix.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-6616118d-c98d-41b5-81c5-07a0eb3a2f3d SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package adios dpkg-buildpackage: source version 1.3-10 dpkg-buildpackage: source changed by Alastair McKinstry dpkg-source --before-build adios-1.3 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_clean find . -name '*.pyc' -delete make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean debian/rules build-arch dh build-arch --with python2 dh_testdir -a debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure -- --with-lustre=/usr --enable-shared --prefix=`pwd`/debian/tmp MPIFC=mpif77 CC=mpicc checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... mpicc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ANSI C... none needed checking dependency style of mpicc... none checking how to run the C preprocessor... mpicc -E checking for egrep... grep -E checking for preprocessor stringizing operator... yes checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ANSI C... (cached) none needed checking dependency style of mpicc... (cached) none checking whether mpicc and cc understand -c and -o together... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for mpicc... mpicc checking for MPI_Init... yes checking for mpi.h... yes checking for mpic++... mpic++ checking for mpi.h... yes checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking whether f95 understands -c and -o together... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lgcc_s -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for mpif90... mpif77 checking for mpif.h... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether f95 accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fPIC checking if mpicc PIC flag -fPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f95 option to produce PIC... -fPIC checking if f95 PIC flag -fPIC works... yes checking if f95 static flag -static works... yes checking if f95 supports -c -o file.o... yes checking whether the f95 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... mpicc checking mxml.h usability... yes checking mxml.h presence... yes checking for mxml.h... yes checking if mxml code can be linked... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes checking for library containing ibv_alloc_pd... -libverbs checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking portals/portals3.h usability... no checking portals/portals3.h presence... no checking for portals/portals3.h... no checking for p3nal_utcp.h... no checking for p3rt/p3rt.h... no configure: === checking for HDF5 === configure: === checking for Parallel HDF5 === checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking if phdf5 code can be compiled... yes configure: === checking for NetCDF === checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking if netcdf code can be compiled... yes configure: === checking NetCDF 4 Parallel === checking for netcdf.h... (cached) yes checking if nc4 parallel code can be compiled... no checking Attributes.h usability... no checking Attributes.h presence... no checking for Attributes.h... no checking nssi_client.h usability... no checking nssi_client.h presence... no checking for nssi_client.h... no checking dart.h usability... no checking dart.h presence... no checking for dart.h... no checking dimes.h usability... no checking dimes.h presence... no checking for dimes.h... no checking dmalloc.h usability... no checking dmalloc.h presence... no checking for dmalloc.h... no configure: === checking for Lustre === checking for csh... no checking for cygpath... echo Datatap dependency check failed configure: Use PHDF5 for sequential HDF5 tools #### Defined USE_PARALLEL_COMPILER to = [] configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating tests/C/Makefile config.status: creating tests/Fortran/Makefile config.status: creating tests/genarray/Makefile config.status: creating tests/bp_read/Makefile config.status: creating tests/suite/Makefile config.status: creating tests/suite/programs/Makefile config.status: creating utils/Makefile config.status: creating utils/adios_lint/Makefile config.status: creating utils/gpp/Makefile config.status: creating utils/bpdump/Makefile config.status: creating utils/bp2h5/Makefile config.status: creating utils/bp2ncd/Makefile config.status: creating utils/bp2ascii/Makefile config.status: creating utils/bpsplit/Makefile config.status: creating utils/bpls/Makefile config.status: creating utils/bp2bp/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/C/scalars/Makefile config.status: creating examples/C/arrays/Makefile config.status: creating examples/C/attributes/Makefile config.status: creating examples/C/manual/Makefile config.status: creating examples/C/global-array/Makefile config.status: creating examples/C/global-array-time/Makefile config.status: creating examples/C/stat/Makefile config.status: creating examples/C/read_all/Makefile config.status: creating examples/Fortran/Makefile config.status: creating examples/Fortran/scalars/Makefile config.status: creating examples/Fortran/arrays/Makefile config.status: creating examples/Fortran/global-array/Makefile config.status: creating examples/Fortran/global-array-time/Makefile config.status: creating adios_config.flags config.status: creating config.h config.status: executing depfiles commands ********************************* adios configured as follows: ********************************* - General Compile FLAGS - CC = mpicc - CXX = g++ - FC = f95 - CPPFLAGS = -D_FORTIFY_SOURCE=2 - CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security - CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security - FCFLAGS = -g -O2 - LDLAGS = -Wl,-z,relro -Wl,--as-needed - LIBS = - MPICC = mpicc - MPICXX = mpic++ - MPIFC = mpif77 - MPILIBS = - No research transport methods - MXML - MXML_CFLAGS = - MXML_CPPFLAGS = - MXML_LDFLAGS = - MXML_LIBS = -lmxml - LUSTRE - LUSTRE_CFLAGS = - LUSTRE_CPPFLAGS = -I/usr/include - LUSTRE_LDFLAGS = -L/usr/lib - LUSTRE_LIBS = -llustreapi - No Portals - INFINIBAND - INFINIBAND_CFLAGS = - INFINIBAND_CPPFLAGS = - INFINIBAND_LDFLAGS = - INFINIBAND_LIBS = -libverbs - No DataTap transport - No DART to build DART transport method - No DIMES to build DIMES transport method - PHDF5 - PHDF5_CFLAGS = - PHDF5_CPPFLAGS = - PHDF5_LDFLAGS = - PHDF5_LIBS = -lhdf5_hl -lhdf5 -lz - HDF5 - HDF5_CFLAGS = - HDF5_CPPFLAGS = - HDF5_LDFLAGS = - HDF5_LIBS = -lhdf5_hl -lhdf5 -lz - No NETCDF 4 Parallel - NetCDF - NETCDF_CFLAGS = - NETCDF_CPPFLAGS = - NETCDF_LDFLAGS = - NETCDF_LIBS = -lnetcdf - No NSSI - SVN version = unknown - Install path = /«PKGBUILDDIR»/debian/tmp make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/src' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios.o `test -f 'adios.c' || echo './'`adios.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' adios.c:244:9: warning: implicit declaration of function 'adios_copy_var_written' is invalid in C99 [-Wimplicit-function-declaration] adios_copy_var_written (&fd->group->vars_written, v, fd); ^ 1 warning generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-common_adios.o `test -f 'common_adios.c' || echo './'`common_adios.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_transport_hooks.o `test -f 'adios_transport_hooks.c' || echo './'`adios_transport_hooks.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_mpi.o `test -f 'adios_mpi.c' || echo './'`adios_mpi.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_mpi_lustre.o `test -f 'adios_mpi_lustre.c' || echo './'`adios_mpi_lustre.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' adios_mpi_lustre.c:234:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_lustre.c:245:10: warning: implicit declaration of function 'llapi_lov_get_uuids' is invalid in C99 [-Wimplicit-function-declaration] rc = llapi_lov_get_uuids(fd, uuids, &num_ost); ^ adios_mpi_lustre.c:260:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:260:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_lustre.c:260:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_lustre.c:281:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:281:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_lustre.c:281:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_lustre.c:299:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_offset")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:299:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_offset")) ^ ( ) adios_mpi_lustre.c:299:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_offset")) ^ == adios_mpi_lustre.c:317:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:317:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:317:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == adios_mpi_lustre.c:364:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:364:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:364:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == 7 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_mpi_amr.o `test -f 'adios_mpi_amr.c' || echo './'`adios_mpi_amr.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' adios_mpi_amr.c:239:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:239:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_amr.c:239:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_amr.c:257:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:257:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_amr.c:257:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_amr.c:274:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_amr.c:346:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_ost")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:346:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_ost")) ^ ( ) adios_mpi_amr.c:346:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_ost")) ^ == adios_mpi_amr.c:363:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_aggregators")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:363:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_aggregators")) ^ ( ) adios_mpi_amr.c:363:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_aggregators")) ^ == adios_mpi_amr.c:388:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "threading")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:388:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "threading")) ^ ( ) adios_mpi_amr.c:388:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "threading")) ^ == adios_mpi_amr.c:409:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "osts_to_skip")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:409:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "osts_to_skip")) ^ ( ) adios_mpi_amr.c:409:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "osts_to_skip")) ^ == adios_mpi_amr.c:424:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "aggregation_type")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:424:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "aggregation_type")) ^ ( ) adios_mpi_amr.c:424:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "aggregation_type")) ^ == adios_mpi_amr.c:740:5: warning: implicit declaration of function 'mkdir' is invalid in C99 [-Wimplicit-function-declaration] mkdir (dir_name, S_IRWXU | S_IRWXG); ^ adios_mpi_amr.c:1052:22: warning: implicit declaration of function 'llapi_lov_get_uuids' is invalid in C99 [-Wimplicit-function-declaration] rc = llapi_lov_get_uuids(f, uuids, &md->g_num_ost); ^ adios_mpi_amr.c:1078:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (ch = strrchr (fd->name, '/')) ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:1078:20: note: place parentheses around the assignment to silence this warning if (ch = strrchr (fd->name, '/')) ^ ( ) adios_mpi_amr.c:1078:20: note: use '==' to turn this assignment into an equality comparison if (ch = strrchr (fd->name, '/')) ^ == adios_mpi_amr.c:2255:17: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&buffer, &buffer_size, &buffer_offset, flag); ^ adios_mpi_amr.c:1792:13: warning: enumeration value 'adios_mode_update' not handled in switch [-Wswitch] switch (fd->mode) ^ 13 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_posix.o `test -f 'adios_posix.c' || echo './'`adios_posix.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' adios_posix.c:745:13: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, fd->buffer, to_write); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_posix.c:766:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, buffer, buffer_size); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_posix.c:1092:21: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&global_index_buffer ^ adios_posix.c:1278:21: warning: implicit declaration of function 'adios_sort_index_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_sort_index_v1 (&p->old_pg_root ^ 4 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_posix1.o `test -f 'adios_posix1.c' || echo './'`adios_posix1.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' adios_posix1.c:473:13: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, fd->buffer, to_write); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_posix1.c:494:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, buffer, buffer_size); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_internals.o `test -f 'adios_internals.c' || echo './'`adios_internals.c clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' adios_internals.c:56:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] strtod (temp, &extra); ^~~~~~ ~~~~~~~~~~~~ adios_internals.c:605:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_long', 'adios_real'... [-Wswitch] switch (type) ^ adios_internals.c:697:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_byte', 'adios_short'... [-Wswitch] switch (type) ^ adios_internals.c:2448:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (type) ^ adios_internals.c:2595:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (var->type) ^ adios_internals.c:2788:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (v->type) ^ adios_internals.c:3206:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (vars_root->type) ^ adios_internals.c:3904:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (v->type) ^ adios_internals.c:4046:9: error: non-void function 'adios_generate_var_characteristics_v1' should return a value [-Wreturn-type] return ; ^ 8 warnings and 1 error generated. make[3]: *** [libadios_a-adios_internals.o] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/src' make[2]: *** [all-recursive] Error 1 make[1]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-1627 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 9396 Build-Time: 24 Distribution: unstable Fail-Stage: build Install-Time: 20 Job: adios_1.3-10 Package: adios Package-Time: 68 Source-Version: 1.3-10 Space: 9396 Status: attempted Version: 1.3-10 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-1627 Build needed 00:01:08, 9396k disc space DC-Status: Failed 68.160471s DC-Time-Estimation: 68.160471 versus expected 185 (r/m: 1.71418312235548 ; m: 68.160471)