DC-Build-Header: librostlab-blast 1.0.0-2 / Sat Jun 23 16:20:20 +0000 2012 DC-Task: logfile:/tmp/librostlab-blast_1.0.0-2_unstable_clang.log version:1.0.0-2 chroot:unstable modes:binary-only:clang source:librostlab-blast architecture:any esttime:268 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang librostlab-blast_1.0.0-2' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-74-194.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librostlab-blast 1.0.0-2 (amd64) 23 Jun 2012 16:20 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librostlab-blast Version: 1.0.0-2 Source Version: 1.0.0-2 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/librostlab-blast-E2IeFR/librostlab-blast-1.0.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librostlab-blast-E2IeFR' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-a2f0bad9-525a-47fe-957b-28327439ba78' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:7 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:8 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:9 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:10 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:11 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Fetched 274 kB in 4s (60.0 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/ Need to get 497 kB of source archives. Get:1 http://localhost/debian/ unstable/main librostlab-blast 1.0.0-2 (dsc) [2381 B] Get:2 http://localhost/debian/ unstable/main librostlab-blast 1.0.0-2 (tar) [491 kB] Get:3 http://localhost/debian/ unstable/main librostlab-blast 1.0.0-2 (diff) [3187 B] Fetched 497 kB in 0s (1824 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (29.9 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Ogzhxc/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab3-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab3-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package `sbuild-build-depends-librostlab-blast-dummy' in `/«BUILDDIR»/resolver-3aMMmE/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librostlab-blast build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bison bsdmainutils debhelper doxygen ed file flex fontconfig fontconfig-config gettext gettext-base graphviz groff-base html2text intltool-debian latex-xcolor libasprintf0c2 libbison-dev libcairo2 libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgd2-noxpm libgettextpo0 libglib2.0-0 libgraph4 libgraphite3 libgvc5 libgvpr1 libice6 libjbig0 libjpeg8 libkpathsea6 liblcms1 libmagic1 libopenjpeg2 libpango1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpoppler19 libptexenc1 librostlab3 librostlab3-dev libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxt6 luatex m4 man-db mime-support po-debconf preview-latex-style tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-dejavu-core ttf-marvosym x11-common Suggested packages: bison-doc wamerican wordlist whois vacation dh-make doxygen-doc doxygen-gui gettext-doc gsfonts graphviz-doc groff libgd-tools liblcms-utils ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp librostlab-doc less www-browser libmail-box-perl perl-tk xpdf-reader pdf-viewer ghostscript gv postscript-viewer libfile-which-perl dot2tex Recommended packages: doxygen-latex curl wget lynx-cur autopoint ttf-liberation libglib2.0-data shared-mime-info poppler-data xml-core texlive-luatex libmail-sendmail-perl lmodern python ruby wish texlive-fonts-recommended-doc tex-gyre tipa texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc latex-beamer prosper texlive-pictures-doc pgf The following NEW packages will be installed: autotools-dev bison bsdmainutils debhelper doxygen ed file flex fontconfig fontconfig-config gettext gettext-base graphviz groff-base html2text intltool-debian latex-xcolor libasprintf0c2 libbison-dev libcairo2 libcdt4 libcgraph5 libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgd2-noxpm libgettextpo0 libglib2.0-0 libgraph4 libgraphite3 libgvc5 libgvpr1 libice6 libjbig0 libjpeg8 libkpathsea6 liblcms1 libmagic1 libopenjpeg2 libpango1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpoppler19 libptexenc1 librostlab3 librostlab3-dev libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxt6 luatex m4 man-db mime-support po-debconf preview-latex-style sbuild-build-depends-librostlab-blast-dummy tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-dejavu-core ttf-marvosym x11-common 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 85.0 MB/85.0 MB of archives. After this operation, 235 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:2 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:3 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:4 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:5 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:6 http://localhost/debian/ unstable/main m4 amd64 1.4.16-3 [260 kB] Get:7 http://localhost/debian/ unstable/main flex amd64 2.5.35-10 [332 kB] Get:8 http://localhost/debian/ unstable/main libexpat1 amd64 2.1.0-1 [141 kB] Get:9 http://localhost/debian/ unstable/main libfreetype6 amd64 2.4.9-1 [450 kB] Get:10 http://localhost/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:11 http://localhost/debian/ unstable/main fontconfig-config all 2.9.0-6 [232 kB] Get:12 http://localhost/debian/ unstable/main libfontconfig1 amd64 2.9.0-6 [299 kB] Get:13 http://localhost/debian/ unstable/main libpixman-1-0 amd64 0.26.0-2 [427 kB] Get:14 http://localhost/debian/ unstable/main libpng12-0 amd64 1.2.49-1 [190 kB] Get:15 http://localhost/debian/ unstable/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:16 http://localhost/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:17 http://localhost/debian/ unstable/main libxcb1 amd64 1.8.1-1 [50.0 kB] Get:18 http://localhost/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB] Get:19 http://localhost/debian/ unstable/main libx11-6 amd64 2:1.5.0-1 [901 kB] Get:20 http://localhost/debian/ unstable/main libxcb-render0 amd64 1.8.1-1 [18.4 kB] Get:21 http://localhost/debian/ unstable/main libxcb-shm0 amd64 1.8.1-1 [10.1 kB] Get:22 http://localhost/debian/ unstable/main libxrender1 amd64 1:0.9.7-1 [32.2 kB] Get:23 http://localhost/debian/ unstable/main libcairo2 amd64 1.12.2-2 [912 kB] Get:24 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:25 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:26 http://localhost/debian/ unstable/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:27 http://localhost/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB] Get:28 http://localhost/debian/ unstable/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-6.1 [229 kB] Get:29 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:30 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:31 http://localhost/debian/ unstable/main x11-common all 1:7.6+13 [278 kB] Get:32 http://localhost/debian/ unstable/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:33 http://localhost/debian/ unstable/main liblcms1 amd64 1.19.dfsg-1.1 [112 kB] Get:34 http://localhost/debian/ unstable/main libthai-data all 0.1.18-1 [205 kB] Get:35 http://localhost/debian/ unstable/main libthai0 amd64 0.1.18-1 [45.0 kB] Get:36 http://localhost/debian/ unstable/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:37 http://localhost/debian/ unstable/main fontconfig amd64 2.9.0-6 [349 kB] Get:38 http://localhost/debian/ unstable/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:39 http://localhost/debian/ unstable/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:40 http://localhost/debian/ unstable/main libopenjpeg2 amd64 1.3+dfsg-4+b1 [83.0 kB] Get:41 http://localhost/debian/ unstable/main libjbig0 amd64 2.0-2 [32.2 kB] Get:42 http://localhost/debian/ unstable/main libtiff4 amd64 3.9.6-5 [201 kB] Get:43 http://localhost/debian/ unstable/main libpoppler19 amd64 0.18.4-3 [1109 kB] Get:44 http://localhost/debian/ unstable/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:45 http://localhost/debian/ unstable/main libxext6 amd64 2:1.3.1-2 [55.3 kB] Get:46 http://localhost/debian/ unstable/main libxt6 amd64 1:1.1.3-1 [211 kB] Get:47 http://localhost/debian/ unstable/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:48 http://localhost/debian/ unstable/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:49 http://localhost/debian/ unstable/main libxaw7 amd64 2:1.0.10-2 [226 kB] Get:50 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:51 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:52 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:53 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:54 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:55 http://localhost/debian/ unstable/main mime-support all 3.52-1 [35.5 kB] Get:56 http://localhost/debian/ unstable/main autotools-dev all 20120608.1 [73.0 kB] Get:57 http://localhost/debian/ unstable/main libbison-dev amd64 1:2.5.dfsg-2.1 [289 kB] Get:58 http://localhost/debian/ unstable/main bison amd64 1:2.5.dfsg-2.1 [689 kB] Get:59 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:60 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:61 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:62 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:63 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:64 http://localhost/debian/ unstable/main doxygen amd64 1.8.1.1-1 [2561 kB] Get:65 http://localhost/debian/ unstable/main ed amd64 1.6-2 [57.6 kB] Get:66 http://localhost/debian/ unstable/main libcdt4 amd64 2.26.3-11 [59.1 kB] Get:67 http://localhost/debian/ unstable/main libcgraph5 amd64 2.26.3-11 [87.3 kB] Get:68 http://localhost/debian/ unstable/main libgraph4 amd64 2.26.3-11 [73.3 kB] Get:69 http://localhost/debian/ unstable/main libpathplan4 amd64 2.26.3-11 [64.5 kB] Get:70 http://localhost/debian/ unstable/main libxdot4 amd64 2.26.3-11 [53.7 kB] Get:71 http://localhost/debian/ unstable/main libgvc5 amd64 2.26.3-11 [555 kB] Get:72 http://localhost/debian/ unstable/main libgvpr1 amd64 2.26.3-11 [244 kB] Get:73 http://localhost/debian/ unstable/main graphviz amd64 2.26.3-11 [375 kB] Get:74 http://localhost/debian/ unstable/main libgraphite3 amd64 1:2.3.1-0.2 [197 kB] Get:75 http://localhost/debian/ unstable/main libkpathsea6 amd64 2012.20120530-2+b1 [162 kB] Get:76 http://localhost/debian/ unstable/main libptexenc1 amd64 2012.20120530-2+b1 [54.8 kB] Get:77 http://localhost/debian/ unstable/main tex-common all 3.13 [640 kB] Get:78 http://localhost/debian/ unstable/main texlive-common all 2012.20120611-1 [200 kB] Get:79 http://localhost/debian/ unstable/main texlive-binaries amd64 2012.20120530-2+b1 [17.3 MB] Get:80 http://localhost/debian/ unstable/main texlive-doc-base all 2012.20120611-1 [1651 kB] Get:81 http://localhost/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:82 http://localhost/debian/ unstable/main luatex amd64 0.70.1.20120524-2 [2437 kB] Get:83 http://localhost/debian/ unstable/main texlive-base all 2012.20120611-1 [14.2 MB] Get:84 http://localhost/debian/ unstable/main texlive-latex-base all 2012.20120611-1 [894 kB] Get:85 http://localhost/debian/ unstable/main texlive-latex-recommended all 2012.20120611-1 [6779 kB] Get:86 http://localhost/debian/ unstable/main latex-xcolor all 2.11-1.1 [610 kB] Get:87 http://localhost/debian/ unstable/main librostlab3 amd64 1.0.20-1 [5734 B] Get:88 http://localhost/debian/ unstable/main librostlab3-dev amd64 1.0.20-1 [13.5 kB] Get:89 http://localhost/debian/ unstable/main preview-latex-style all 11.86-10 [311 kB] Get:90 http://localhost/debian/ unstable/main ttf-marvosym all 0.1+dfsg-2 [46.8 kB] Get:91 http://localhost/debian/ unstable/main texlive-fonts-recommended all 2012.20120611-1 [5485 kB] Get:92 http://localhost/debian/ unstable/main texlive-pictures all 2012.20120611-1 [2276 kB] Get:93 http://localhost/debian/ unstable/main texlive-latex-extra all 2012.20120611-1 [6397 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.0 MB in 3s (25.0 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../archives/m4_1.4.16-3_amd64.deb) ... Selecting previously unselected package flex. Unpacking flex (from .../flex_2.5.35-10_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ... 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Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxcb-render0:amd64 (1.8.1-1) ... Setting up libxcb-shm0:amd64 (1.8.1-1) ... Setting up libxrender1:amd64 (1:0.9.7-1) ... Setting up libcairo2:amd64 (1.12.2-2) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.5-1) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libgd2-noxpm:amd64 (2.0.36~rc1~dfsg-6.1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up liblcms1:amd64 (1.19.dfsg-1.1) ... Setting up libthai-data (0.1.18-1) ... Setting up libthai0:amd64 (0.1.18-1) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-6) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libopenjpeg2 (1.3+dfsg-4+b1) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff4:amd64 (3.9.6-5) ... Setting up libpoppler19:amd64 (0.18.4-3) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxext6:amd64 (2:1.3.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libxaw7:amd64 (2:1.0.10-2) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up autotools-dev (20120608.1) ... Setting up libbison-dev:amd64 (1:2.5.dfsg-2.1) ... Setting up bison (1:2.5.dfsg-2.1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up doxygen (1.8.1.1-1) ... Setting up ed (1.6-2) ... Setting up libcdt4 (2.26.3-11) ... Setting up libcgraph5 (2.26.3-11) ... Setting up libgraph4 (2.26.3-11) ... Setting up libpathplan4 (2.26.3-11) ... Setting up libxdot4 (2.26.3-11) ... Setting up libgvc5 (2.26.3-11) ... Setting up libgvpr1 (2.26.3-11) ... Setting up graphviz (2.26.3-11) ... Setting up libgraphite3 (1:2.3.1-0.2) ... Setting up libkpathsea6 (2012.20120530-2+b1) ... Setting up libptexenc1 (2012.20120530-2+b1) ... Setting up tex-common (3.13) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-common (2012.20120611-1) ... Setting up texlive-binaries (2012.20120530-2+b1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Setting up texlive-doc-base (2012.20120611-1) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up luatex (0.70.1.20120524-2) ... texlive-base is not ready, cannot create formats Setting up librostlab3 (1.0.20-1) ... Setting up librostlab3-dev (1.0.20-1) ... Setting up preview-latex-style (11.86-10) ... Setting up ttf-marvosym (0.1+dfsg-2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2012.20120611-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-fonts-recommended (2012.20120611-1) ... Setting up texlive-pictures (2012.20120611-1) ... Setting up texlive-latex-base (2012.20120611-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2012.20120611-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up latex-xcolor (2.11-1.1) ... Setting up texlive-latex-extra (2012.20120611-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: apt_0.9.7 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.25 bash_4.2-2 binutils_2.22-6.1 bison_1:2.5.dfsg-2.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 doxygen_1.8.1.1-1 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 ed_1.6-2 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 flex_2.5.35-10 fontconfig_2.9.0-6 fontconfig-config_2.9.0-6 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 graphviz_2.26.3-11 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 latex-xcolor_2.11-1.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libbison-dev_1:2.5.dfsg-2.1 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcairo2_1.12.2-2 libcdt4_2.26.3-11 libcgraph5_2.26.3-11 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgd2-noxpm_2.0.36~rc1~dfsg-6.1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libgraph4_2.26.3-11 libgraphite3_1:2.3.1-0.2 libgvc5_2.26.3-11 libgvpr1_2.26.3-11 libice6_2:1.0.8-2 libitm1_4.7.1-1 libjbig0_2.0-2 libjpeg8_8d-1 libkpathsea6_2012.20120530-2+b1 liblcms1_1.19.dfsg-1.1 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libopenjpeg2_1.3+dfsg-4+b1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpathplan4_2.26.3-11 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-2 libpng12-0_1.2.49-1 libpoppler19_0.18.4-3 libptexenc1_2012.20120530-2+b1 libquadmath0_4.7.1-1 libreadline6_6.2-8 librostlab3_1.0.20-1 librostlab3-dev_1.0.20-1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxdot4_2.26.3-11 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-4 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxrender1_1:0.9.7-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 luatex_0.70.1.20120524-2 m4_1.4.16-3 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 preview-latex-style_11.86-10 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tex-common_3.13 texlive-base_2012.20120611-1 texlive-binaries_2012.20120530-2+b1 texlive-common_2012.20120611-1 texlive-doc-base_2012.20120611-1 texlive-fonts-recommended_2012.20120611-1 texlive-latex-base_2012.20120611-1 texlive-latex-extra_2012.20120611-1 texlive-latex-recommended_2012.20120611-1 texlive-pictures_2012.20120611-1 ttf-dejavu-core_2.33-2 ttf-marvosym_0.1+dfsg-2 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 x11-common_1:7.6+13 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Apr 4 09:56:03 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.0-2.dsc dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.0 dpkg-source: info: unpacking librostlab-blast_1.0.0.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.0-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-a2f0bad9-525a-47fe-957b-28327439ba78 SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package librostlab-blast dpkg-buildpackage: source version 1.0.0-2 dpkg-buildpackage: source changed by Laszlo Kajan dpkg-source --before-build librostlab-blast-1.0.0 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel rm -f debian/librostlab-blast0.substvars rm -f debian/librostlab-blast0.*.debhelper rm -rf debian/librostlab-blast0/ rm -f debian/librostlab-blast0-dev.substvars rm -f debian/librostlab-blast0-dev.*.debhelper rm -rf debian/librostlab-blast0-dev/ rm -f debian/librostlab-blast-doc.substvars rm -f debian/librostlab-blast-doc.*.debhelper rm -rf debian/librostlab-blast-doc/ rm -f debian/librostlab-blast0-dbg.substvars rm -f debian/librostlab-blast0-dbg.*.debhelper rm -rf debian/librostlab-blast0-dbg/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=\${prefix}/lib/librostlab-blast --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_build --parallel make -j1 make[2]: Entering directory `/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory `/«PKGBUILDDIR»' Making all in lib make[4]: Entering directory `/«PKGBUILDDIR»/lib' /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex make all-am make[5]: Entering directory `/«PKGBUILDDIR»/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wall -g -O2 -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from rostlab/blast-parser-parser.h:76: In file included from ./rostlab/blast-parser-location.h:44: rostlab/blast-parser-position.h:135:42: warning: '&&' within '||' [-Wlogical-op-parentheses] || pos1.filename && pos2.filename && *pos1.filename == *pos2.filename) ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rostlab/blast-parser-position.h:135:42: note: place parentheses around the '&&' expression to silence this warning || pos1.filename && pos2.filename && *pos1.filename == *pos2.filename) ^ ( ) In file included from blast-parser-driver.cpp:19: ./rostlab/blast-parser-driver.h:61:12: error: expected a class or namespace friend YY_DECL_FRIEND; ^~~~~~~~~~~~~~ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ~~~~~~~~~~~~~~~~~~~~~~~~^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 1 warning and 6 errors generated. make[5]: *** [librostlab_blast_la-blast-parser-driver.lo] Error 1 make[5]: Leaving directory `/«PKGBUILDDIR»/lib' make[4]: *** [all] Error 2 make[3]: *** [all-recursive] Error 1 make[2]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make[1]: *** [override_dh_auto_build] Error 2 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 make[4]: Leaving directory `/«PKGBUILDDIR»/lib' make[3]: Leaving directory `/«PKGBUILDDIR»' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-1621 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 6916 Build-Time: 11 Distribution: unstable Fail-Stage: build Install-Time: 39 Job: librostlab-blast_1.0.0-2 Package: librostlab-blast Package-Time: 74 Source-Version: 1.0.0-2 Space: 6916 Status: attempted Version: 1.0.0-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-1621 Build needed 00:01:14, 6916k disc space DC-Status: Failed 74.954429s DC-Time-Estimation: 74.954429 versus expected 268 (r/m: 2.57550585836629 ; m: 74.954429)