DC-Build-Header: ncbi-blast+ 2.2.26-3 / Sat Jun 23 00:11:18 +0000 2012 DC-Task: logfile:/tmp/ncbi-blast+_2.2.26-3_unstable_clang.log version:2.2.26-3 chroot:unstable modes:binary-only:clang source:ncbi-blast+ architecture:any esttime:10762 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang ncbi-blast+_2.2.26-3' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-30-144-169.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ncbi-blast+ 2.2.26-3 (amd64) 23 Jun 2012 00:11 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ncbi-blast+ Version: 2.2.26-3 Source Version: 2.2.26-3 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-I4F0K7' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-9de83274-08f8-488b-bb66-b2aef89873e2' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-22-1416.06.pdiff [15.9 kB] Get:7 http://localhost unstable/main amd64 2012-06-22-1416.06.pdiff [23.9 kB] Get:8 http://localhost unstable/main 2012-06-22-1416.06.pdiff [15.9 kB] Get:9 http://localhost unstable/main 2012-06-22-1416.06.pdiff [1537 B] Get:10 http://localhost unstable/main amd64 2012-06-22-1416.06.pdiff [23.9 kB] Get:11 http://localhost unstable/main 2012-06-22-2014.37.pdiff [14.8 kB] Get:12 http://localhost unstable/main 2012-06-22-1416.06.pdiff [1537 B] Get:13 http://localhost unstable/main amd64 2012-06-22-2014.37.pdiff [12.8 kB] Get:14 http://localhost unstable/main 2012-06-22-2014.37.pdiff [14.8 kB] Get:15 http://localhost unstable/main 2012-06-22-2014.37.pdiff [234 B] Get:16 http://localhost unstable/main amd64 2012-06-22-2014.37.pdiff [12.8 kB] Get:17 http://localhost unstable/main 2012-06-22-2014.37.pdiff [234 B] Fetched 327 kB in 5s (59.0 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-passwd zlib1g 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 128 kB of archives. After this operation, 11.3 kB disk space will be freed. Get:1 http://localhost/debian/ unstable/main base-passwd amd64 3.5.25 [40.9 kB] Get:2 http://localhost/debian/ unstable/main zlib1g amd64 1:1.2.7.dfsg-13 [87.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 128 kB in 0s (9207 kB/s) (Reading database ... 11730 files and directories currently installed.) Preparing to replace base-passwd 3.5.24 (using .../base-passwd_3.5.25_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.25) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace zlib1g:amd64 1:1.2.7.dfsg-12 (using .../zlib1g_1%3a1.2.7.dfsg-13_amd64.deb) ... Unpacking replacement zlib1g:amd64 ... Setting up zlib1g:amd64 (1:1.2.7.dfsg-13) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'ncbi-blast+' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/ncbi-blast+/trunk/ Need to get 12.9 MB of source archives. Get:1 http://localhost/debian/ unstable/main ncbi-blast+ 2.2.26-3 (dsc) [2316 B] Get:2 http://localhost/debian/ unstable/main ncbi-blast+ 2.2.26-3 (tar) [12.9 MB] Get:3 http://localhost/debian/ unstable/main ncbi-blast+ 2.2.26-3 (diff) [22.2 kB] Fetched 12.9 MB in 0s (16.4 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (42.5 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /build/ncbi-blast+-I4F0K7 + echo 'Block the installation of new gcc version' Block the installation of new gcc version + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/ncbi-blast+-I4F0K7/resolver-ZQS4i0/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), autotools-dev (>= 20100122), debhelper (>= 7.0.50~), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libpcre3-dev, quilt (>= 0.46-7~), time, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), autotools-dev (>= 20100122), debhelper (>= 7.0.50~), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libpcre3-dev, quilt (>= 0.46-7~), time, zlib1g-dev dpkg-deb: building package `sbuild-build-depends-ncbi-blast+-dummy' in `/build/ncbi-blast+-I4F0K7/resolver-C_ugaq/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ncbi-blast+ build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libboost-test-dev libboost-test1.49-dev libboost-test1.49.0 libboost1.49-dev libbz2-dev libcroco3 libgettextpo0 libglib2.0-0 libicu48 libmagic1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt time zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libboost1.49-doc libboost-chrono1.49-dev libboost-date-time1.49-dev libboost-filesystem1.49-dev libboost-graph-parallel1.49-dev libboost-graph1.49-dev libboost-iostreams1.49-dev libboost-locale1.49-dev libboost-math1.49-dev libboost-mpi1.49-dev libboost-program-options1.49-dev libboost-python1.49-dev libboost-random1.49-dev libboost-regex1.49-dev libboost-serialization1.49-dev libboost-signals1.49-dev libboost-system1.49-dev libboost-thread1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libboost-test-dev libboost-test1.49-dev libboost-test1.49.0 libboost1.49-dev libbz2-dev libcroco3 libgettextpo0 libglib2.0-0 libicu48 libmagic1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 29.5 MB/29.5 MB of archives. After this operation, 148 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:2 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:3 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:4 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:5 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:6 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:7 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:8 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:9 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:10 http://localhost/debian/ unstable/main libicu48 amd64 4.8.1.1-8 [8138 kB] Get:11 http://localhost/debian/ unstable/main libpcrecpp0 amd64 1:8.30-5 [125 kB] Get:12 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:13 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:14 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:15 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:16 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:17 http://localhost/debian/ unstable/main time amd64 1.7-23.1 [33.1 kB] Get:18 http://localhost/debian/ unstable/main autotools-dev all 20120608.1 [73.0 kB] Get:19 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:20 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:21 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:22 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:23 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:24 http://localhost/debian/ unstable/main diffstat amd64 1.55-3 [30.0 kB] Get:25 http://localhost/debian/ unstable/main libboost1.49-dev amd64 1.49.0-3 [9266 kB] Get:26 http://localhost/debian/ unstable/main libboost-test1.49.0 amd64 1.49.0-3 [265 kB] Get:27 http://localhost/debian/ unstable/main libboost-test1.49-dev amd64 1.49.0-3 [657 kB] Get:28 http://localhost/debian/ unstable/main libboost-test-dev amd64 1.49.0.1 [2750 B] Get:29 http://localhost/debian/ unstable/main libbz2-dev amd64 1.0.6-3 [32.9 kB] Get:30 http://localhost/debian/ unstable/main libpcre3-dev amd64 1:8.30-5 [349 kB] Get:31 http://localhost/debian/ unstable/main quilt all 0.60-2 [377 kB] Get:32 http://localhost/debian/ unstable/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.5 MB in 0s (29.6 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.3-1_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0:amd64. Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libicu48:amd64. Unpacking libicu48:amd64 (from .../libicu48_4.8.1.1-8_amd64.deb) ... Selecting previously unselected package libpcrecpp0:amd64. Unpacking libpcrecpp0:amd64 (from .../libpcrecpp0_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-8_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.2-1_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package time. Unpacking time (from .../time_1.7-23.1_amd64.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120608.1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-3_amd64.deb) ... Selecting previously unselected package libboost1.49-dev. Unpacking libboost1.49-dev (from .../libboost1.49-dev_1.49.0-3_amd64.deb) ... Selecting previously unselected package libboost-test1.49.0. Unpacking libboost-test1.49.0 (from .../libboost-test1.49.0_1.49.0-3_amd64.deb) ... Selecting previously unselected package libboost-test1.49-dev. Unpacking libboost-test1.49-dev (from .../libboost-test1.49-dev_1.49.0-3_amd64.deb) ... Selecting previously unselected package libboost-test-dev. Unpacking libboost-test-dev (from .../libboost-test-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libbz2-dev:amd64. Unpacking libbz2-dev:amd64 (from .../libbz2-dev_1.0.6-3_amd64.deb) ... Selecting previously unselected package libpcre3-dev. Unpacking libpcre3-dev (from .../libpcre3-dev_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ... Selecting previously unselected package zlib1g-dev:amd64. Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-ncbi-blast+-dummy. Unpacking sbuild-build-depends-ncbi-blast+-dummy (from .../sbuild-build-depends-ncbi-blast+-dummy.deb) ... Setting up libpipeline1:amd64 (1.2.1-1) ... Setting up libasprintf0c2:amd64 (0.18.1.1-9) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.5-1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up libicu48:amd64 (4.8.1.1-8) ... Setting up libpcrecpp0:amd64 (1:8.30-5) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up time (1.7-23.1) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package time should be updated. Setting up autotools-dev (20120608.1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up diffstat (1.55-3) ... Setting up libboost1.49-dev (1.49.0-3) ... Setting up libboost-test1.49.0 (1.49.0-3) ... Setting up libboost-test1.49-dev (1.49.0-3) ... Setting up libboost-test-dev (1.49.0.1) ... Setting up libbz2-dev:amd64 (1.0.6-3) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up quilt (0.60-2) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: apt_0.9.7 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.25 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libboost-test-dev_1.49.0.1 libboost-test1.49-dev_1.49.0-3 libboost-test1.49.0_1.49.0-3 libboost1.49-dev_1.49.0-3 libbz2-1.0_1.0.6-3 libbz2-dev_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libicu48_4.8.1.1-8 libitm1_4.7.1-1 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpcre3-dev_1:8.30-5 libpcrecpp0_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 time_1.7-23.1 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri May 11 03:51:00 2012 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.2.26-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.2.26 dpkg-source: info: unpacking ncbi-blast+_2.2.26.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.2.26-3.debian.tar.gz dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying wrong_path_to_touch.patch dpkg-source: info: applying fix_gcc47_errors dpkg-source: info: applying use_pie_for_apps Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-9de83274-08f8-488b-bb66-b2aef89873e2 SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package ncbi-blast+ dpkg-buildpackage: source version 2.2.26-3 dpkg-buildpackage: source changed by Aaron M. Ucko dpkg-source --before-build ncbi-blast+-2.2.26 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev --with quilt dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ dh_quilt_unpatch -O-Dc\+\+ Removing patch use_pie_for_apps Restoring c++/src/build-system/Makefile.app.in Removing patch fix_gcc47_errors Restoring c++/src/serial/stdtypes.cpp Restoring c++/include/util/rangemap.hpp Restoring c++/include/util/linkedset.hpp Restoring c++/include/util/bitset/bmserial.h Restoring c++/include/util/bitset/bmfunc.h Restoring c++/include/serial/iterator.hpp Restoring c++/include/serial/impl/stltypes.hpp Restoring c++/include/corelib/ncbistr.hpp Restoring c++/include/corelib/ncbistl.hpp Restoring c++/include/corelib/ncbimisc.hpp Restoring c++/include/corelib/ncbiexpt.hpp Restoring c++/include/connect/ncbi_conn_stream.hpp Removing patch wrong_path_to_touch.patch Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Restoring c++/src/build-system/NEWS Restoring c++/src/build-system/Makefile.mk.in Restoring c++/src/build-system/Makefile.meta.in Removing patch no_multiarch_rpath Restoring c++/src/build-system/configure.ac Restoring c++/src/build-system/configure Removing patch fix_lib_deps Restoring c++/src/serial/Makefile.serial.lib Restoring c++/src/corelib/Makefile.test_mt.lib Restoring c++/src/corelib/Makefile.test_boost.lib Restoring c++/src/util/xregexp/Makefile.xregexp.lib Restoring c++/src/util/Makefile.util.lib Restoring c++/src/util/sequtil/Makefile.sequtil.lib Restoring c++/src/util/compress/api/Makefile.compress.lib Restoring c++/src/objmgr/split/Makefile.id2_split.lib Restoring c++/src/objmgr/util/Makefile.util.lib Restoring c++/src/connect/ext/Makefile.xconnext.lib Restoring c++/src/connect/Makefile.xconnect.lib Restoring c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib Restoring c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib Restoring c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib Restoring c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib Restoring c++/src/objtools/blast/services/Makefile.blast_services.lib Restoring c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib Restoring c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib Restoring c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib Restoring c++/src/objtools/simple/Makefile.xobjsimple.lib Restoring c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib Restoring c++/src/objtools/readers/Makefile.xobjread.lib Restoring c++/src/objtools/alnmgr/Makefile.alnmgr.lib Restoring c++/src/objtools/align_format/Makefile.align_format.lib Restoring c++/src/objects/seqsplit/Makefile.seqsplit.lib Restoring c++/src/objects/seqset/Makefile.seqset.lib Restoring c++/src/objects/seqcode/Makefile.seqcode.lib Restoring c++/src/objects/seq/Makefile.seq.lib Restoring c++/src/objects/pub/Makefile.pub.lib Restoring c++/src/objects/medline/Makefile.medline.lib Restoring c++/src/objects/id2/Makefile.id2.lib Restoring c++/src/objects/id1/Makefile.id1.lib Restoring c++/src/objects/genomecoll/Makefile.genome_collection.lib Restoring c++/src/objects/general/Makefile.general.lib Restoring c++/src/objects/blastdb/Makefile.blastdb.lib Restoring c++/src/objects/biblio/Makefile.biblio.lib Restoring c++/src/objects/submit/Makefile.submit.lib Restoring c++/src/objects/seqedit/Makefile.seqedit.lib Restoring c++/src/objects/scoremat/Makefile.scoremat.lib Restoring c++/src/objects/entrez2/Makefile.entrez2cli.lib Restoring c++/src/objects/entrez2/Makefile.entrez2.lib Restoring c++/src/objects/blastxml/Makefile.blastxml.lib Restoring c++/src/objects/blast/Makefile.blast.lib Restoring c++/src/objects/blast/Makefile.xnetblastcli.lib Restoring c++/src/html/Makefile.html.lib Restoring c++/src/cgi/Makefile.cgi.lib Restoring c++/src/algo/segmask/Makefile.xalgosegmask.lib Restoring c++/src/algo/dustmask/Makefile.xalgodustmask.lib Restoring c++/src/algo/winmask/Makefile.xalgowinmask.lib Restoring c++/src/algo/blast/Makefile.blast_macros.mk Restoring c++/src/algo/blast/blastinput/Makefile.blastinput.lib Restoring c++/src/algo/blast/api/Makefile.xblast.lib Restoring c++/src/algo/blast/format/Makefile.xblastformat.lib Restoring c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Restoring c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib Restoring c++/src/algo/blast/core/Makefile.blast.lib Removing patch legacy_rename_rpsblast Restoring c++/src/app/blast/legacy_blast.pl Removing patch hurd_fixes Restoring c++/src/connect/ext/ncbi_localnet.c Restoring c++/src/connect/ncbi_socket_cxx.cpp Restoring c++/src/build-system/configure.ac Restoring c++/src/build-system/configure No patches applied debian/rules override_dh_clean make[1]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' dh_clean for x in c++/src/objects/*/*.files; do \ (cd `dirname $x` && ../../../BUILD/build/new_module.sh \ `basename $x .files`.module purge_sources); \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in make[1]: [override_dh_clean] Error 2 (ignored) rm -rf c++/BUILD c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module make[1]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev --with quilt dh_testdir -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ dh_quilt_patch -a -O-Dc\+\+ Applying patch hurd_fixes patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac patching file c++/src/connect/ncbi_socket_cxx.cpp patching file c++/src/connect/ext/ncbi_localnet.c Applying patch legacy_rename_rpsblast patching file c++/src/app/blast/legacy_blast.pl Applying patch fix_lib_deps patching file c++/src/algo/blast/core/Makefile.blast.lib patching file c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib patching file c++/src/algo/blast/format/Makefile.xblastformat.lib patching file c++/src/algo/winmask/Makefile.xalgowinmask.lib patching file c++/src/cgi/Makefile.cgi.lib patching file c++/src/html/Makefile.html.lib patching file c++/src/objects/blast/Makefile.xnetblastcli.lib patching file c++/src/objtools/align_format/Makefile.align_format.lib patching file c++/src/objtools/alnmgr/Makefile.alnmgr.lib patching file c++/src/objtools/readers/Makefile.xobjread.lib patching file c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib patching file c++/src/objtools/simple/Makefile.xobjsimple.lib patching file c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib patching file c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib patching file c++/src/algo/blast/api/Makefile.xblast.lib patching file c++/src/algo/blast/blastinput/Makefile.blastinput.lib patching file c++/src/algo/dustmask/Makefile.xalgodustmask.lib patching file c++/src/connect/Makefile.xconnect.lib patching file c++/src/connect/ext/Makefile.xconnext.lib patching file c++/src/objects/blast/Makefile.blast.lib patching file c++/src/objects/blastxml/Makefile.blastxml.lib patching file c++/src/objects/entrez2/Makefile.entrez2.lib patching file c++/src/objects/entrez2/Makefile.entrez2cli.lib patching file c++/src/objects/scoremat/Makefile.scoremat.lib patching file c++/src/objects/seqedit/Makefile.seqedit.lib patching file c++/src/objects/submit/Makefile.submit.lib patching file c++/src/objmgr/util/Makefile.util.lib patching file c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib patching file c++/src/objtools/blast/services/Makefile.blast_services.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib patching file c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib patching file c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib patching file c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib patching file c++/src/util/compress/api/Makefile.compress.lib patching file c++/src/util/sequtil/Makefile.sequtil.lib patching file c++/src/corelib/Makefile.test_boost.lib patching file c++/src/corelib/Makefile.test_mt.lib patching file c++/src/objects/biblio/Makefile.biblio.lib patching file c++/src/objects/blastdb/Makefile.blastdb.lib patching file c++/src/objects/general/Makefile.general.lib patching file c++/src/objects/genomecoll/Makefile.genome_collection.lib patching file c++/src/objects/id1/Makefile.id1.lib patching file c++/src/objects/id2/Makefile.id2.lib patching file c++/src/objects/medline/Makefile.medline.lib patching file c++/src/objects/pub/Makefile.pub.lib patching file c++/src/objects/seq/Makefile.seq.lib patching file c++/src/objects/seqcode/Makefile.seqcode.lib patching file c++/src/objects/seqset/Makefile.seqset.lib patching file c++/src/objects/seqsplit/Makefile.seqsplit.lib patching file c++/src/serial/Makefile.serial.lib patching file c++/src/util/Makefile.util.lib patching file c++/src/util/xregexp/Makefile.xregexp.lib patching file c++/src/algo/segmask/Makefile.xalgosegmask.lib patching file c++/src/objmgr/split/Makefile.id2_split.lib patching file c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib patching file c++/src/algo/blast/Makefile.blast_macros.mk patching file c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Applying patch no_multiarch_rpath patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac Applying patch wrong_path_to_touch.patch patching file c++/src/build-system/Makefile.meta.in patching file c++/src/build-system/Makefile.mk.in patching file c++/src/build-system/NEWS patching file c++/src/build-system/configure.ac patching file c++/src/build-system/configure Applying patch fix_gcc47_errors patching file c++/include/connect/ncbi_conn_stream.hpp patching file c++/include/corelib/ncbiexpt.hpp patching file c++/include/corelib/ncbimisc.hpp patching file c++/include/corelib/ncbistl.hpp patching file c++/include/corelib/ncbistr.hpp patching file c++/include/serial/impl/stltypes.hpp patching file c++/include/serial/iterator.hpp patching file c++/include/util/bitset/bmfunc.h patching file c++/include/util/bitset/bmserial.h patching file c++/include/util/linkedset.hpp patching file c++/include/util/rangemap.hpp patching file c++/src/serial/stdtypes.cpp Applying patch use_pie_for_apps patching file c++/src/build-system/Makefile.app.in Now at patch use_pie_for_apps debian/rules override_dh_auto_configure make[1]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc supports -Wl,-E... yes checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for touch... /bin/touch checking for egrep... grep -E checking how to run grep -E quietly... grep -E -q checking for valgrind... no checking how to run the C++ preprocessor... /usr/bin/g++ -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc supports -Wl,--no-allow-shlib-undefined... no checking how to run the C preprocessor... /usr/bin/gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... (cached) yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking for unistd.h... (cached) yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for wstring... yes checking for socklen_t... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking 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type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... no checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for obsolete string::compare() syntax... no checking whether the auto_ptr template class works... yes checking for min/max templates... yes checking whether new C++ streams have ios_base::... yes checking for ios(_base)::register_callback... yes checking for std::char_traits::... yes checking for std::is_sorted<> in ... no checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... up checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... __forceinline checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... restrict checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/g++ supports C++0x nullptr... no checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... -lrt checking for library containing cplus_demangle... no checking for nanosleep... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for reentrant Sybase libraries... no checking for Sybase in ... no checking for FreeTDS in ... no checking for mysql_config... no checking for Berkeley DB libraries in /BerkeleyDB... no checking for python... no checking for python2.3... no checking for python2.4... no checking for python2.5... no checking Boost version... 1_49 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -mt (autodetected) checking for Boost.Regex in /boost... no checking for Boost.Spirit in /boost... yes checking for Boost.Test in /boost... included-only checking for Boost.Threads in /boost... no checking for the NCBI C toolkit in ... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for FLTK in /fltk... no checking for wx-config... no checking for wxWidgets in /wxwidgets... no checking for FastCGI libraries in /fcgi-current... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories in /SP... no checking for ORBacus in /corba/OB-4.0.1... no checking for ICU in /icu... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for Xerces-C++... no checking for Xalan-C++... no checking for libsqlite3... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libungif... no checking for libgif... no checking for libXpm in .... no checking for freetype-config... no checking for libmagic... no checking for libcurl... no configure: looking for configurables below /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++... configure: ...done updating cache config.cache configure: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/config.status config.status: creating 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config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/sysdep.sh config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/relocate.sh config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/run_sybase_app.sh config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/check.cfg config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/app/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/./Makefile config.status: creating /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib/ncbicfg.c is updated project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/Linux64/3.7.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/blob_storage.cpp -o blob_storage.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ddumpable.cpp -o ddumpable.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/env_reg.cpp -o env_reg.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/metareg.cpp -o metareg.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include ncbicfg.c -o ncbicfg.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:722:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ 1 warning generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbidll.cpp -o ncbidll.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbienv.cpp -o ncbienv.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbifile.cpp -o ncbifile.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbireg.cpp -o ncbireg.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbistr.cpp -o ncbistr.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbistre.cpp -o ncbistre.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbithr.cpp -o ncbithr.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbitime.cpp -o ncbitime.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/obj_store.cpp -o obj_store.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/stream_utils.cpp -o stream_utils.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/syslog.cpp -o syslog.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/version.cpp -o version.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/request_ctx.cpp -o request_ctx.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/request_control.cpp -o request_control.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/expr.cpp -o expr.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/resource_info.cpp -o resource_info.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/perf_log.cpp -o perf_log.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -shared -o libxncbi.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -ldl -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxncbi.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxncbi.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib/libxncbi.so ln -f .xncbi.dep /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/test_mt.cpp -o test_mt.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -shared -o libtest_mt.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtest_mt.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtest_mt.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib/libtest_mt.so ln -f .test_mt.dep /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/corelib/test_boost.cpp -o test_boost.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -shared -o libtest_boost.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O test_boost.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtest_boost.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtest_boost.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib/libtest_boost.so ln -f .test_boost.dep /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[2]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[2]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util TMPL=util -w all make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/random_gen.cpp -o random_gen.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/utf8.cpp -o utf8.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/checksum.cpp -o checksum.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/bytesrc.cpp -o bytesrc.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/strbuffer.cpp -o strbuffer.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/itree.cpp -o itree.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/smalldns.cpp -o smalldns.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/strsearch.cpp -o strsearch.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/logrotate.cpp -o logrotate.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/format_guess.cpp -o format_guess.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/ascii85.cpp -o ascii85.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/md5.cpp -o md5.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/file_obsolete.cpp -o file_obsolete.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/unicode.cpp -o unicode.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/dictionary.cpp -o dictionary.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/dictionary_util.cpp -o dictionary_util.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/sgml_entity.cpp -o sgml_entity.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/transmissionrw.cpp -o transmissionrw.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/miscmath.c -o miscmath.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/mutex_pool.cpp -o mutex_pool.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/line_reader.cpp -o line_reader.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/util_exception.cpp -o util_exception.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/uttp.cpp -o uttp.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/multi_writer.cpp -o multi_writer.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/itransaction.cpp -o itransaction.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/thread_pool.cpp -o thread_pool.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/scheduler.cpp -o scheduler.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/distribution.cpp -o distribution.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/util_misc.cpp -o util_misc.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/ncbi_url.cpp -o ncbi_url.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -shared -o libxutil.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o util_misc.o ncbi_url.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxutil.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxutil.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib/libxutil.so ln -f .xutil.dep /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/.xutil.dep make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' make[2]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' make[2]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[2]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' make[2]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/xregexp/regexp.cpp -o regexp.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -shared -o libxregexp.so -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxregexp.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxregexp.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib/libxregexp.so ln -f .xregexp.dep /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' make[2]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' make[2]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O -Wl,-E file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -lrt -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f project_tree_builder /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f project_tree_builder /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O LIBRARIES: build as dynamic by default FEATURES: GCC MT DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GNUTLS OPENSSL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 Boost.Regex Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW FLTK wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT Xerces Xalan SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType MAGIC CURL PROJECTS: enabled: cgi local_lbsm connext ncbi_crypt serial objects app algo disabled: bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build && make all_r or simply run make in the current directory Alternatively, cd /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build && make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' debian/rules override_dh_auto_build make[1]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' cd c++/BUILD/build && \ make -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" \ APP_LDFLAGS='-Wl,-E -fPIE -pie' make[2]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build' /usr/bin/make -w -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build' cd corelib/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[5]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[5]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=corelib sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd util/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' cd util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w sources make[4]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' cd serial/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=serial sources= configurables=configurables.null make[4]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial TMPL=serial -w all make[5]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/hookdata.cpp -o hookdata.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/hookdatakey.cpp -o hookdatakey.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/typeinfo.cpp -o typeinfo.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/typeinfo.cpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/objectinfo.cpp -o objectinfo.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/objectinfo.cpp:35: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/objectiter.cpp -o objectiter.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/objectiter.cpp:35: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/objectio.cpp -o objectio.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/objectio.cpp:34: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectio.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/typeref.cpp -o typeref.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/typeref.cpp:37: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialimpl.hpp:39: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stltypes.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/typemap.cpp -o typemap.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp -o stdtypes.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp:34: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypesimpl.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/enumerated.cpp -o enumerated.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/enumerated.cpp:37: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/enumerated.hpp:35: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/ptrinfo.cpp -o ptrinfo.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/ptrinfo.cpp:34: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/autoptrinfo.cpp:37: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/continfo.cpp -o continfo.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/continfo.cpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/stltypes.cpp -o stltypes.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/stltypes.cpp:35: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialimpl.hpp:39: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stltypes.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ 2 warnings generated. /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/memberid.cpp -o memberid.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/memberlist.cpp -o memberlist.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/item.cpp -o item.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/classinfob.cpp -o classinfob.o clang: warning: argument unused during compilation: '--param ssp-buffer-size=4' In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/classinfob.cpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46: In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:53: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:36: warning: sizeof on array function parameter will return size of 'unsigned int (*)[64]' instead of 'unsigned int [32][64]' [-Wsizeof-array-argument] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:502:15: note: declared here unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size]) ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/util/bitset/bmtrans.h:504:37: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] ::memset(tmatrix_out, 0, sizeof(tmatrix_out)); ~~~~~~~~~~~ ^~~~~~~~~~~ In file included from /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/src/serial/classinfob.cpp:37: /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:626:34: error: cannot catch reference to incomplete type 'ncbi::CEofException' } catch ( CEofException& ) { ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:613:7: note: forward declaration of 'ncbi::CEofException' class CEofException; ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:643:34: error: cannot catch reference to incomplete type 'ncbi::CEofException' } catch ( CEofException& ) { ^ /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:613:7: note: forward declaration of 'ncbi::CEofException' class CEofException; ^ 2 warnings and 2 errors generated. make[5]: *** [classinfob.o] Error 1 make[5]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' FAILED: src/serial/Makefile.serial.lib make[5]: Entering directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /bin/rm -f libxser.so .xser.dep .libxser.so.stamp /bin/rm -f /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/lib/libxser.so /build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/status/.xser.dep make[5]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' make[4]: *** [all.nonusr] Error 2 make[4]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build/serial' make[3]: *** [xser.lib.real] Error 2 make[2]: *** [ptb_all] Error 2 make[3]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build' make[2]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26/c++/BUILD/build' make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory `/build/ncbi-blast+-I4F0K7/ncbi-blast+-2.2.26' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-0014 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /build/ncbi-blast+-I4F0K7 Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 107828 Build-Time: 189 Distribution: unstable Fail-Stage: build Install-Time: 9 Job: ncbi-blast+_2.2.26-3 Package: ncbi-blast+ Package-Time: 220 Source-Version: 2.2.26-3 Space: 107828 Status: attempted Version: 2.2.26-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-0014 Build needed 00:03:40, 107828k disc space DC-Status: Failed 221.108645s DC-Time-Estimation: 221.108645 versus expected 10762 (r/m: 47.6729046709142 ; m: 221.108645)