DC-Build-Header: velvet 1.2.03~nozlibcopy-1 / Sat Jun 23 16:21:35 +0000 2012 DC-Task: logfile:/tmp/velvet_1.2.03~nozlibcopy-1_unstable_clang.log version:1.2.03~nozlibcopy-1 chroot:unstable modes:binary-only:clang source:velvet architecture:any esttime:245 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang velvet_1.2.03~nozlibcopy-1' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-74-194.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ velvet 1.2.03~nozlibcopy-1 (amd64) 23 Jun 2012 16:21 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: velvet Version: 1.2.03~nozlibcopy-1 Source Version: 1.2.03~nozlibcopy-1 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/velvet-Spuasx/velvet-1.2.03~nozlibcopy' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/velvet-Spuasx' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-3a71199f-f3be-4d21-ac48-002ca65fcc7a' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:7 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:8 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:9 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:10 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:11 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Fetched 274 kB in 4s (60.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'velvet' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/velvet/trunk/ Need to get 3994 kB of source archives. Get:1 http://localhost/debian/ unstable/main velvet 1.2.03~nozlibcopy-1 (dsc) [2177 B] Get:2 http://localhost/debian/ unstable/main velvet 1.2.03~nozlibcopy-1 (tar) [3982 kB] Get:3 http://localhost/debian/ unstable/main velvet 1.2.03~nozlibcopy-1 (diff) [8940 B] Fetched 3994 kB in 0s (22.0 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (29.5 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-r7kA8m/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev, help2man, quilt, texlive-latex-base Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev, help2man, quilt, texlive-latex-base dpkg-deb: building package `sbuild-build-depends-velvet-dummy' in `/«BUILDDIR»/resolver-ea1Bpj/apt_archive/sbuild-build-depends-velvet-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install velvet build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper diffstat ed file fontconfig-config gettext gettext-base groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libfontconfig1 libfreetype6 libgettextpo0 libglib2.0-0 libgraphite3 libice6 libjbig0 libjpeg8 libkpathsea6 liblcms1 libmagic1 libopenjpeg2 libpaper-utils libpaper1 libpcre3 libpipeline1 libpng12-0 libpoppler19 libptexenc1 libsm6 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxt6 luatex man-db mime-support po-debconf quilt tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-latex-base ttf-dejavu-core x11-common zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff liblcms-utils less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent perl-tk xpdf-reader pdf-viewer ghostscript gv postscript-viewer Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info poppler-data xml-core texlive-luatex libmail-sendmail-perl lmodern python ruby wish texlive-latex-base-doc The following NEW packages will be installed: bsdmainutils debhelper diffstat ed file fontconfig-config gettext gettext-base groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libfontconfig1 libfreetype6 libgettextpo0 libglib2.0-0 libgraphite3 libice6 libjbig0 libjpeg8 libkpathsea6 liblcms1 libmagic1 libopenjpeg2 libpaper-utils libpaper1 libpcre3 libpipeline1 libpng12-0 libpoppler19 libptexenc1 libsm6 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxt6 luatex man-db mime-support po-debconf quilt sbuild-build-depends-velvet-dummy tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-latex-base ttf-dejavu-core x11-common zlib1g-dev 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 55.3 MB/55.3 MB of archives. After this operation, 139 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:2 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:3 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:4 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:5 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:6 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:7 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:8 http://localhost/debian/ unstable/main libexpat1 amd64 2.1.0-1 [141 kB] Get:9 http://localhost/debian/ unstable/main libfreetype6 amd64 2.4.9-1 [450 kB] Get:10 http://localhost/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:11 http://localhost/debian/ unstable/main fontconfig-config all 2.9.0-6 [232 kB] Get:12 http://localhost/debian/ unstable/main libfontconfig1 amd64 2.9.0-6 [299 kB] Get:13 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:14 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:15 http://localhost/debian/ unstable/main x11-common all 1:7.6+13 [278 kB] Get:16 http://localhost/debian/ unstable/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:17 http://localhost/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB] Get:18 http://localhost/debian/ unstable/main liblcms1 amd64 1.19.dfsg-1.1 [112 kB] Get:19 http://localhost/debian/ unstable/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:20 http://localhost/debian/ unstable/main libpng12-0 amd64 1.2.49-1 [190 kB] Get:21 http://localhost/debian/ unstable/main libopenjpeg2 amd64 1.3+dfsg-4+b1 [83.0 kB] Get:22 http://localhost/debian/ unstable/main libjbig0 amd64 2.0-2 [32.2 kB] Get:23 http://localhost/debian/ unstable/main libtiff4 amd64 3.9.6-5 [201 kB] Get:24 http://localhost/debian/ unstable/main libpoppler19 amd64 0.18.4-3 [1109 kB] Get:25 http://localhost/debian/ unstable/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:26 http://localhost/debian/ unstable/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:27 http://localhost/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:28 http://localhost/debian/ unstable/main libxcb1 amd64 1.8.1-1 [50.0 kB] Get:29 http://localhost/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB] Get:30 http://localhost/debian/ unstable/main libx11-6 amd64 2:1.5.0-1 [901 kB] Get:31 http://localhost/debian/ unstable/main libxext6 amd64 2:1.3.1-2 [55.3 kB] Get:32 http://localhost/debian/ unstable/main libxt6 amd64 1:1.1.3-1 [211 kB] Get:33 http://localhost/debian/ unstable/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:34 http://localhost/debian/ unstable/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:35 http://localhost/debian/ unstable/main libxaw7 amd64 2:1.0.10-2 [226 kB] Get:36 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:37 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:38 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:39 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:40 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:41 http://localhost/debian/ unstable/main mime-support all 3.52-1 [35.5 kB] Get:42 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:43 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:44 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:45 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:46 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:47 http://localhost/debian/ unstable/main diffstat amd64 1.55-3 [30.0 kB] Get:48 http://localhost/debian/ unstable/main ed amd64 1.6-2 [57.6 kB] Get:49 http://localhost/debian/ unstable/main help2man amd64 1.40.10 [96.2 kB] Get:50 http://localhost/debian/ unstable/main libgraphite3 amd64 1:2.3.1-0.2 [197 kB] Get:51 http://localhost/debian/ unstable/main libkpathsea6 amd64 2012.20120530-2+b1 [162 kB] Get:52 http://localhost/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:53 http://localhost/debian/ unstable/main libptexenc1 amd64 2012.20120530-2+b1 [54.8 kB] Get:54 http://localhost/debian/ unstable/main tex-common all 3.13 [640 kB] Get:55 http://localhost/debian/ unstable/main luatex amd64 0.70.1.20120524-2 [2437 kB] Get:56 http://localhost/debian/ unstable/main quilt all 0.60-2 [377 kB] Get:57 http://localhost/debian/ unstable/main texlive-common all 2012.20120611-1 [200 kB] Get:58 http://localhost/debian/ unstable/main texlive-doc-base all 2012.20120611-1 [1651 kB] Get:59 http://localhost/debian/ unstable/main texlive-binaries amd64 2012.20120530-2+b1 [17.3 MB] Get:60 http://localhost/debian/ unstable/main texlive-base all 2012.20120611-1 [14.2 MB] Get:61 http://localhost/debian/ unstable/main texlive-latex-base all 2012.20120611-1 [894 kB] Get:62 http://localhost/debian/ unstable/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.3 MB in 2s (27.4 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.3-1_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-6_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-6_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0:amd64. Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.6+13_all.deb) ... Selecting previously unselected package libice6:amd64. Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1_amd64.deb) ... Selecting previously unselected package liblcms1:amd64. Unpacking liblcms1:amd64 (from .../liblcms1_1.19.dfsg-1.1_amd64.deb) ... Selecting previously unselected package libpaper1:amd64. Unpacking libpaper1:amd64 (from .../libpaper1_1.1.24+nmu2_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1_amd64.deb) ... Selecting previously unselected package libopenjpeg2. Unpacking libopenjpeg2 (from .../libopenjpeg2_1.3+dfsg-4+b1_amd64.deb) ... Selecting previously unselected package libjbig0:amd64. Unpacking libjbig0:amd64 (from .../libjbig0_2.0-2_amd64.deb) ... Selecting previously unselected package libtiff4:amd64. Unpacking libtiff4:amd64 (from .../libtiff4_3.9.6-5_amd64.deb) ... Selecting previously unselected package libpoppler19:amd64. Unpacking libpoppler19:amd64 (from .../libpoppler19_0.18.4-3_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1_amd64.deb) ... Selecting previously unselected package libxext6:amd64. Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2_amd64.deb) ... Selecting previously unselected package libxt6:amd64. Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.3-1_amd64.deb) ... Selecting previously unselected package libxmu6:amd64. Unpacking libxmu6:amd64 (from .../libxmu6_2%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxpm4:amd64. Unpacking libxpm4:amd64 (from .../libxpm4_1%3a3.5.10-1_amd64.deb) ... Selecting previously unselected package libxaw7:amd64. Unpacking libxaw7:amd64 (from .../libxaw7_2%3a1.0.10-2_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-8_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.2-1_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.52-1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-3_amd64.deb) ... Selecting previously unselected package ed. Unpacking ed (from .../archives/ed_1.6-2_amd64.deb) ... Selecting previously unselected package help2man. Unpacking help2man (from .../help2man_1.40.10_amd64.deb) ... Selecting previously unselected package libgraphite3. Unpacking libgraphite3 (from .../libgraphite3_1%3a2.3.1-0.2_amd64.deb) ... Selecting previously unselected package libkpathsea6. Unpacking libkpathsea6 (from .../libkpathsea6_2012.20120530-2+b1_amd64.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_amd64.deb) ... Selecting previously unselected package libptexenc1. Unpacking libptexenc1 (from .../libptexenc1_2012.20120530-2+b1_amd64.deb) ... Selecting previously unselected package tex-common. Unpacking tex-common (from .../tex-common_3.13_all.deb) ... Selecting previously unselected package luatex. Unpacking luatex (from .../luatex_0.70.1.20120524-2_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ... Selecting previously unselected package texlive-common. Unpacking texlive-common (from .../texlive-common_2012.20120611-1_all.deb) ... Selecting previously unselected package texlive-doc-base. Unpacking texlive-doc-base (from .../texlive-doc-base_2012.20120611-1_all.deb) ... Selecting previously unselected package texlive-binaries. Unpacking texlive-binaries (from .../texlive-binaries_2012.20120530-2+b1_amd64.deb) ... Selecting previously unselected package texlive-base. Unpacking texlive-base (from .../texlive-base_2012.20120611-1_all.deb) ... Selecting previously unselected package texlive-latex-base. Unpacking texlive-latex-base (from .../texlive-latex-base_2012.20120611-1_all.deb) ... Selecting previously unselected package zlib1g-dev:amd64. Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-velvet-dummy. Unpacking sbuild-build-depends-velvet-dummy (from .../sbuild-build-depends-velvet-dummy.deb) ... Setting up libpipeline1:amd64 (1.2.1-1) ... Setting up libasprintf0c2:amd64 (0.18.1.1-9) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.5-1) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libfreetype6:amd64 (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-6) ... Setting up libfontconfig1:amd64 (2.9.0-6) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up liblcms1:amd64 (1.19.dfsg-1.1) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpng12-0:amd64 (1.2.49-1) ... Setting up libopenjpeg2 (1.3+dfsg-4+b1) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff4:amd64 (3.9.6-5) ... Setting up libpoppler19:amd64 (0.18.4-3) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxext6:amd64 (2:1.3.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libxaw7:amd64 (2:1.0.10-2) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up diffstat (1.55-3) ... Setting up ed (1.6-2) ... Setting up help2man (1.40.10) ... Setting up libgraphite3 (1:2.3.1-0.2) ... Setting up libkpathsea6 (2012.20120530-2+b1) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libptexenc1 (2012.20120530-2+b1) ... Setting up tex-common (3.13) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up luatex (0.70.1.20120524-2) ... texlive-base is not ready, cannot create formats Setting up quilt (0.60-2) ... Setting up texlive-common (2012.20120611-1) ... Setting up texlive-doc-base (2012.20120611-1) ... Setting up texlive-binaries (2012.20120530-2+b1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2012.20120611-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2012.20120611-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-velvet-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: apt_0.9.7 base-files_6.11 base-passwd_3.5.25 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 ed_1.6-2 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 fontconfig-config_2.9.0-6 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 help2man_1.40.10 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libgraphite3_1:2.3.1-0.2 libice6_2:1.0.8-2 libitm1_4.7.1-1 libjbig0_2.0-2 libjpeg8_8d-1 libkpathsea6_2012.20120530-2+b1 liblcms1_1.19.dfsg-1.1 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libopenjpeg2_1.3+dfsg-4+b1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpng12-0_1.2.49-1 libpoppler19_0.18.4-3 libptexenc1_2012.20120530-2+b1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsm6_2:1.2.1-2 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxaw7_2:1.0.10-2 libxcb1_1.8.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxml2_2.8.0+dfsg1-4 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 luatex_0.70.1.20120524-2 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-velvet-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tex-common_3.13 texlive-base_2012.20120611-1 texlive-binaries_2012.20120530-2+b1 texlive-common_2012.20120611-1 texlive-doc-base_2012.20120611-1 texlive-latex-base_2012.20120611-1 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 x11-common_1:7.6+13 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Feb 16 04:39:43 2012 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./velvet_1.2.03~nozlibcopy-1.dsc dpkg-source: info: extracting velvet in velvet-1.2.03~nozlibcopy dpkg-source: info: unpacking velvet_1.2.03~nozlibcopy.orig.tar.xz dpkg-source: info: unpacking velvet_1.2.03~nozlibcopy-1.debian.tar.gz dpkg-source: info: applying include_debians_zlib.patch dpkg-source: info: applying shuffleSequences_fasta.patch dpkg-source: info: applying fix-perl-path.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-3a71199f-f3be-4d21-ac48-002ca65fcc7a SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package velvet dpkg-buildpackage: source version 1.2.03~nozlibcopy-1 dpkg-buildpackage: source changed by Charles Plessy dpkg-source --before-build velvet-1.2.03~nozlibcopy dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with quilt dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_clean make[2]: Entering directory `/«PKGBUILDDIR»' rm obj/*.o obj/dbg/*.o ./velvet* rm: cannot remove `obj/*.o': No such file or directory rm: cannot remove `obj/dbg/*.o': No such file or directory rm: cannot remove `./velvet*': No such file or directory make[2]: [clean] Error 1 (ignored) rm -f doc/manual_src/Manual.toc doc/manual_src/Manual.aux doc/manual_src/Manual.out doc/manual_src/Manual.log rm -f doc/manual_src/Columbus_manual.aux doc/manual_src/Columbus_manual.out doc/manual_src/Columbus_manual.log make[2]: Leaving directory `/«PKGBUILDDIR»' rm -rf zlib make[1]: Leaving directory `/«PKGBUILDDIR»' dh_quilt_unpatch Removing patch fix-perl-path.patch Restoring contrib/select_paired/select_paired.pl Removing patch shuffleSequences_fasta.patch Restoring contrib/shuffleSequences_fasta/shuffleSequences_fasta.py Removing patch include_debians_zlib.patch Restoring src/binarySequences.c Restoring src/readSet.c No patches applied dh_clean debian/rules build-arch dh build-arch --with quilt dh_testdir -a dh_quilt_patch -a Applying patch include_debians_zlib.patch patching file src/readSet.c Hunk #1 succeeded at 37 (offset 2 lines). patching file src/binarySequences.c Applying patch shuffleSequences_fasta.patch patching file contrib/shuffleSequences_fasta/shuffleSequences_fasta.py Applying patch fix-perl-path.patch patching file contrib/select_paired/select_paired.pl Now at patch fix-perl-path.patch dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' touch zlib # prevents the zlib in the ‘third-party’ folder to be built. dh_auto_build -- OPENMP=1 make[2]: Entering directory `/«PKGBUILDDIR»' rm obj/*.o obj/dbg/*.o rm: cannot remove `obj/*.o': No such file or directory rm: cannot remove `obj/dbg/*.o': No such file or directory make[2]: [cleanobj] Error 1 (ignored) mkdir -p obj gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/tightString.c -o obj/tightString.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/run.c -o obj/run.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/splay.c -o obj/splay.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/splayTable.c -o obj/splayTable.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/graph.c -o obj/graph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/run2.c -o obj/run2.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/fibHeap.c -o obj/fibHeap.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/fib.c -o obj/fib.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/concatenatedGraph.c -o obj/concatenatedGraph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/passageMarker.c -o obj/passageMarker.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/graphStats.c -o obj/graphStats.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/correctedGraph.c -o obj/correctedGraph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/dfib.c -o obj/dfib.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/dfibHeap.c -o obj/dfibHeap.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/recycleBin.c -o obj/recycleBin.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/readSet.c -o obj/readSet.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/binarySequences.c -o obj/binarySequences.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/shortReadPairs.c -o obj/shortReadPairs.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/locallyCorrectedGraph.c -o obj/locallyCorrectedGraph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/graphReConstruction.c -o obj/graphReConstruction.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/roadMap.c -o obj/roadMap.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/preGraph.c -o obj/preGraph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/preGraphConstruction.c -o obj/preGraphConstruction.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/concatenatedPreGraph.c -o obj/concatenatedPreGraph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/readCoherentGraph.c -o obj/readCoherentGraph.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/utility.c -o obj/utility.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/kmer.c -o obj/kmer.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/scaffold.c -o obj/scaffold.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/kmerOccurenceTable.c -o obj/kmerOccurenceTable.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/allocArray.c -o obj/allocArray.o clang: warning: argument unused during compilation: '-fopenmp' gcc -Wall -fopenmp -O3 -o velveth obj/tightString.o obj/run.o obj/recycleBin.o obj/splay.o obj/splayTable.o obj/readSet.o obj/binarySequences.o obj/utility.o obj/kmer.o obj/kmerOccurenceTable.o -lz -lm obj/run.o: In function `main': src/run.c:(.text+0x3d2): undefined reference to `isCreateBinary' src/run.c:(.text+0x4d6): undefined reference to `isCreateBinary' obj/splayTable.o: In function `inputSequenceArrayIntoSplayTableAndArchive': src/splayTable.c:(.text+0x1444): undefined reference to `isCreateBinary' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [velveth] Error 1 make[2]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build: make -j1 OPENMP=1 returned exit code 2 make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory `/«PKGBUILDDIR»' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-1622 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 41712 Build-Time: 8 Distribution: unstable Fail-Stage: build Install-Time: 26 Job: velvet_1.2.03~nozlibcopy-1 Package: velvet Package-Time: 58 Source-Version: 1.2.03~nozlibcopy-1 Space: 41712 Status: attempted Version: 1.2.03~nozlibcopy-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-1622 Build needed 00:00:58, 41712k disc space DC-Status: Failed 58.753785s DC-Time-Estimation: 58.753785 versus expected 245 (r/m: 3.16994411508978 ; m: 58.753785)