DC-Build-Header: ncbi-seg 0.0.20000620-1 / Mon Jan 28 03:55:41 +0000 2013 DC-Task: logfile:/tmp/ncbi-seg_0.0.20000620-1_unstable_clang.log version:0.0.20000620-1 chroot:unstable modes:binary-only:clang source:ncbi-seg architecture:any esttime: DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang ncbi-seg_0.0.20000620-1' Could not create '/sbuild-nonexistent/logs': No such file or directory Could not create '/sbuild-nonexistent/logs': No such file or directory sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-30-130-111.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ncbi-seg 0.0.20000620-1 (amd64) 28 Jan 2013 03:55 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ncbi-seg Version: 0.0.20000620-1 Source Version: 0.0.20000620-1 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ncbi-seg-Ex9N_Y/ncbi-seg-0.0.20000620' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ncbi-seg-Ex9N_Y' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-2bc34e6b-9ca2-4a19-9e17-6bf98b2ed4f2' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [227 kB] Ign http://localhost unstable/main Sources/DiffIndex Ign http://localhost unstable/main amd64 Packages/DiffIndex Get:3 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:4 http://localhost unstable/main 2013-01-27-2011.16.pdiff [737 B] Get:5 http://localhost unstable/main 2013-01-27-2011.16.pdiff [737 B] Get:6 http://localhost unstable/main Sources [8234 kB] Get:7 http://localhost unstable/main amd64 Packages [8284 kB] Fetched 16.8 MB in 3s (4876 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'ncbi-seg' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/seg/trunk/ Need to get 98.5 kB of source archives. Get:1 http://localhost/debian/ unstable/main ncbi-seg 0.0.20000620-1 (dsc) [1424 B] Get:2 http://localhost/debian/ unstable/main ncbi-seg 0.0.20000620-1 (tar) [86.8 kB] Get:3 http://localhost/debian/ unstable/main ncbi-seg 0.0.20000620-1 (diff) [10.3 kB] Fetched 98.5 kB in 0s (390 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Add experimental as repository' Add experimental as repository + echo deb http://localhost:9999/debian experimental main + apt-get update Ign http://localhost unstable InRelease Ign http://localhost experimental InRelease Hit http://localhost unstable Release.gpg Get:1 http://localhost experimental Release.gpg [836 B] Hit http://localhost unstable Release Get:2 http://localhost experimental Release [161 kB] Ign http://localhost unstable/main Sources/DiffIndex Ign http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Get:3 http://localhost experimental/main Translation-en [704 kB] Get:4 http://localhost experimental/main amd64 Packages [1605 kB] Hit http://localhost unstable/main Sources Hit http://localhost unstable/main amd64 Packages Fetched 2471 kB in 1s (1311 kB/s) Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Ign http://localhost experimental InRelease Hit http://localhost unstable Release.gpg Hit http://localhost experimental Release.gpg Hit http://localhost unstable Release Hit http://localhost experimental Release Ign http://localhost unstable/main Sources/DiffIndex Ign http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Ign http://localhost experimental/main amd64 Packages/DiffIndex Get:1 http://localhost experimental/main Translation-en/DiffIndex [7819 B] Hit http://localhost unstable/main Sources Hit http://localhost unstable/main amd64 Packages Hit http://localhost experimental/main amd64 Packages Fetched 7819 B in 2s (3906 B/s) Reading package lists... + apt-get install --yes --no-install-recommends clang -t experimental Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: clang-3.2 compiler-rt cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base gcc-4.8-base libc-dev-bin libc6 libc6-dev libclang-common-dev libexpat1 libffi5 libgcc-4.7-dev libgcc1 libgomp1 libitm1 libllvm3.2 libncurses5 libncursesw5 libobjc-4.7-dev libobjc4 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 libstdc++6 libstdc++6-4.7-dev libtinfo5 mime-support python python-minimal python2.7 python2.7-minimal Suggested packages: gcc-4.7-locales g++-4.7-multilib gcc-4.7-doc libstdc++6-4.7-dbg gcc-4.7-multilib libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg libitm1-dbg libquadmath0-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7 binutils-gold glibc-doc libstdc++6-4.7-doc python-doc python-tk python2.7-doc binfmt-support Recommended packages: llvm-3.2-dev manpages-dev file The following NEW packages will be installed: clang clang-3.2 compiler-rt gcc-4.8-base libclang-common-dev libexpat1 libffi5 libgcc-4.7-dev libllvm3.2 libncursesw5 libobjc-4.7-dev libobjc4 libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support python python-minimal python2.7 python2.7-minimal The following packages will be upgraded: cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libitm1 libncurses5 libquadmath0 libstdc++6 libstdc++6-4.7-dev libtinfo5 15 upgraded, 21 newly installed, 0 to remove and 24 not upgraded. Need to get 56.7 MB of archives. After this operation, 72.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ experimental/main gcc-4.8-base amd64 4.8-20130123-1 [147 kB] Get:2 http://localhost/debian/ experimental/main libc6-dev amd64 2.16-0experimental1 [3086 kB] Get:3 http://localhost/debian/ experimental/main libc-dev-bin amd64 2.16-0experimental1 [226 kB] Get:4 http://localhost/debian/ experimental/main libc6 amd64 2.16-0experimental1 [4729 kB] Get:5 http://localhost/debian/ experimental/main libgcc1 amd64 1:4.8-20130123-1 [43.7 kB] Get:6 http://localhost/debian/ experimental/main libstdc++6 amd64 4.8-20130123-1 [336 kB] Get:7 http://localhost/debian/ experimental/main libtinfo5 amd64 5.9+20130119-1 [294 kB] Get:8 http://localhost/debian/ experimental/main libncurses5 amd64 5.9+20130119-1 [115 kB] Get:9 http://localhost/debian/ experimental/main libncursesw5 amd64 5.9+20130119-1 [142 kB] Get:10 http://localhost/debian/ unstable/main libssl1.0.0 amd64 1.0.1c-4 [1213 kB] Get:11 http://localhost/debian/ unstable/main libsqlite3-0 amd64 3.7.15.2-1 [463 kB] Get:12 http://localhost/debian/ experimental/main libexpat1 amd64 2.1.0-2 [138 kB] Get:13 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:14 http://localhost/debian/ experimental/main libgomp1 amd64 4.8-20130123-1 [27.4 kB] Get:15 http://localhost/debian/ experimental/main libitm1 amd64 4.8-20130123-1 [37.7 kB] Get:16 http://localhost/debian/ unstable/main libllvm3.2 amd64 3.2-2 [7865 kB] Get:17 http://localhost/debian/ experimental/main libobjc4 amd64 4.8-20130123-1 [163 kB] Get:18 http://localhost/debian/ experimental/main libquadmath0 amd64 4.8-20130123-1 [139 kB] Get:19 http://localhost/debian/ experimental/main libstdc++6-4.7-dev amd64 4.7.2-19 [1678 kB] Get:20 http://localhost/debian/ experimental/main g++-4.7 amd64 4.7.2-19 [5877 kB] Get:21 http://localhost/debian/ experimental/main gcc-4.7 amd64 4.7.2-19 [5831 kB] Get:22 http://localhost/debian/ experimental/main cpp-4.7 amd64 4.7.2-19 [5416 kB] Get:23 http://localhost/debian/ experimental/main libgcc-4.7-dev amd64 4.7.2-19 [2465 kB] Get:24 http://localhost/debian/ experimental/main gcc-4.7-base amd64 4.7.2-19 [148 kB] Get:25 http://localhost/debian/ experimental/main mime-support all 3.53~experimental2 [36.5 kB] Get:26 http://localhost/debian/ experimental/main libpython2.7-minimal amd64 2.7.3-15 [531 kB] Get:27 http://localhost/debian/ experimental/main python2.7-minimal amd64 2.7.3-15 [1220 kB] Get:28 http://localhost/debian/ experimental/main libpython2.7-stdlib amd64 2.7.3-15 [2367 kB] Get:29 http://localhost/debian/ experimental/main python2.7 amd64 2.7.3-15 [326 kB] Get:30 http://localhost/debian/ experimental/main python-minimal amd64 2.7.3-10 [41.8 kB] Get:31 http://localhost/debian/ experimental/main python amd64 2.7.3-10 [184 kB] Get:32 http://localhost/debian/ experimental/main libobjc-4.7-dev amd64 4.7.2-19 [717 kB] Get:33 http://localhost/debian/ experimental/main libclang-common-dev amd64 3.2-1~exp5 [303 kB] Get:34 http://localhost/debian/ experimental/main compiler-rt amd64 3.2-1~exp5 [315 kB] Get:35 http://localhost/debian/ experimental/main clang-3.2 amd64 3.2-1~exp5 [10.1 MB] Get:36 http://localhost/debian/ experimental/main clang all 3.2-1~exp5 [9506 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.7 MB in 1s (32.4 MB/s) Selecting previously unselected package gcc-4.8-base:amd64. (Reading database ... 13484 files and directories currently installed.) Unpacking gcc-4.8-base:amd64 (from .../gcc-4.8-base_4.8-20130123-1_amd64.deb) ... Setting up gcc-4.8-base:amd64 (4.8-20130123-1) ... (Reading database ... 13491 files and directories currently installed.) Preparing to replace libc6-dev:amd64 2.13-38 (using .../libc6-dev_2.16-0experimental1_amd64.deb) ... Unpacking replacement libc6-dev:amd64 ... Preparing to replace libc-dev-bin 2.13-38 (using .../libc-dev-bin_2.16-0experimental1_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6:amd64 2.13-38 (using .../libc6_2.16-0experimental1_amd64.deb) ... debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.16-0experimental1) ... debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 13509 files and directories currently installed.) Preparing to replace libgcc1:amd64 1:4.7.2-5 (using .../libgcc1_1%3a4.8-20130123-1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.8-20130123-1) ... (Reading database ... 13509 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.8-20130123-1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.8-20130123-1) ... (Reading database ... 13509 files and directories currently installed.) Preparing to replace libtinfo5:amd64 5.9-10 (using .../libtinfo5_5.9+20130119-1_amd64.deb) ... Unpacking replacement libtinfo5:amd64 ... Setting up libtinfo5:amd64 (5.9+20130119-1) ... (Reading database ... 13509 files and directories currently installed.) Preparing to replace libncurses5:amd64 5.9-10 (using .../libncurses5_5.9+20130119-1_amd64.deb) ... Unpacking replacement libncurses5:amd64 ... Setting up libncurses5:amd64 (5.9+20130119-1) ... Selecting previously unselected package libncursesw5:amd64. (Reading database ... 13509 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9+20130119-1_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-4_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.15.2-1_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-2_amd64.deb) ... Selecting previously unselected package libffi5:amd64. Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Preparing to replace libgomp1:amd64 4.7.2-5 (using .../libgomp1_4.8-20130123-1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace libitm1:amd64 4.7.2-5 (using .../libitm1_4.8-20130123-1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Selecting previously unselected package libllvm3.2:amd64. Unpacking libllvm3.2:amd64 (from .../libllvm3.2_3.2-2_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.8-20130123-1_amd64.deb) ... Preparing to replace libquadmath0:amd64 4.7.2-5 (using .../libquadmath0_4.8-20130123-1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace libstdc++6-4.7-dev 4.7.2-5 (using .../libstdc++6-4.7-dev_4.7.2-19_amd64.deb) ... Unpacking replacement libstdc++6-4.7-dev:amd64 ... Preparing to replace g++-4.7 4.7.2-5 (using .../g++-4.7_4.7.2-19_amd64.deb) ... Unpacking replacement g++-4.7 ... Preparing to replace gcc-4.7 4.7.2-5 (using .../gcc-4.7_4.7.2-19_amd64.deb) ... Unpacking replacement gcc-4.7 ... Preparing to replace cpp-4.7 4.7.2-5 (using .../cpp-4.7_4.7.2-19_amd64.deb) ... Unpacking replacement cpp-4.7 ... Selecting previously unselected package libgcc-4.7-dev:amd64. Unpacking libgcc-4.7-dev:amd64 (from .../libgcc-4.7-dev_4.7.2-19_amd64.deb) ... Preparing to replace gcc-4.7-base:amd64 4.7.2-5 (using .../gcc-4.7-base_4.7.2-19_amd64.deb) ... Unpacking replacement gcc-4.7-base:amd64 ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.53~experimental2_all.deb) ... Selecting previously unselected package libpython2.7-minimal:amd64. Unpacking libpython2.7-minimal:amd64 (from .../libpython2.7-minimal_2.7.3-15_amd64.deb) ... Selecting previously unselected package python2.7-minimal. Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-15_amd64.deb) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Unpacking libpython2.7-stdlib:amd64 (from .../libpython2.7-stdlib_2.7.3-15_amd64.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.3-15_amd64.deb) ... Selecting previously unselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.7.3-10_amd64.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.3-10_amd64.deb) ... Selecting previously unselected package libobjc-4.7-dev:amd64. Unpacking libobjc-4.7-dev:amd64 (from .../libobjc-4.7-dev_4.7.2-19_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.2-1~exp5_amd64.deb) ... Selecting previously unselected package compiler-rt. Unpacking compiler-rt (from .../compiler-rt_3.2-1~exp5_amd64.deb) ... Selecting previously unselected package clang-3.2. Unpacking clang-3.2 (from .../clang-3.2_3.2-1~exp5_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../clang_3.2-1~exp5_all.deb) ... Setting up libc-dev-bin (2.16-0experimental1) ... Setting up libc6-dev:amd64 (2.16-0experimental1) ... Setting up libncursesw5:amd64 (5.9+20130119-1) ... Setting up libssl1.0.0:amd64 (1.0.1c-4) ... debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype Setting up libsqlite3-0:amd64 (3.7.15.2-1) ... Setting up libexpat1:amd64 (2.1.0-2) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libgomp1:amd64 (4.8-20130123-1) ... Setting up libitm1:amd64 (4.8-20130123-1) ... Setting up libllvm3.2:amd64 (3.2-2) ... Setting up libobjc4:amd64 (4.8-20130123-1) ... Setting up libquadmath0:amd64 (4.8-20130123-1) ... Setting up gcc-4.7-base:amd64 (4.7.2-19) ... Setting up libgcc-4.7-dev:amd64 (4.7.2-19) ... Setting up libstdc++6-4.7-dev:amd64 (4.7.2-19) ... Setting up cpp-4.7 (4.7.2-19) ... Setting up gcc-4.7 (4.7.2-19) ... Setting up g++-4.7 (4.7.2-19) ... Setting up mime-support (3.53~experimental2) ... Setting up libpython2.7-minimal:amd64 (2.7.3-15) ... Setting up python2.7-minimal (2.7.3-15) ... Linking and byte-compiling packages for runtime python2.7... Setting up libpython2.7-stdlib:amd64 (2.7.3-15) ... Setting up python2.7 (2.7.3-15) ... Setting up python-minimal (2.7.3-10) ... Setting up python (2.7.3-10) ... Setting up libobjc-4.7-dev:amd64 (4.7.2-19) ... Setting up libclang-common-dev (3.2-1~exp5) ... Setting up compiler-rt (3.2-1~exp5) ... Setting up clang-3.2 (3.2-1~exp5) ... Setting up clang (3.2-1~exp5) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7' + cd /usr/bin + for VERSION in '$VERSIONS' + rm g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-MICg00/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/710 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14674 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), dh-autoreconf Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), dh-autoreconf dpkg-deb: building package `sbuild-build-depends-ncbi-seg-dummy' in `/«BUILDDIR»/resolver-ZmUeai/apt_archive/sbuild-build-depends-ncbi-seg-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ncbi-seg build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper dh-autoreconf file gettext gettext-base groff-base html2text intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libgettextpo-dev libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff libtool-doc automaken gfortran fortran95-compiler gcj less www-browser libmail-box-perl Recommended packages: autopoint curl wget lynx-cur libglib2.0-data shared-mime-info libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper dh-autoreconf file gettext gettext-base groff-base html2text intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libgettextpo-dev libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-ncbi-seg-dummy 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB/11.3 MB of archives. After this operation, 31.5 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.2-1 [39.9 kB] Get:2 http://localhost/debian/ unstable/main groff-base amd64 1.22.1-2 [741 kB] Get:3 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.4 [210 kB] Get:4 http://localhost/debian/ unstable/main man-db amd64 2.6.3-3 [898 kB] Get:5 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-10 [27.2 kB] Get:6 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-2 [202 kB] Get:7 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.31-2 [247 kB] Get:8 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-7 [903 kB] Get:9 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:10 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.6-2 [134 kB] Get:11 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:12 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-10 [145 kB] Get:13 http://localhost/debian/ unstable/main file amd64 5.11-2 [51.8 kB] Get:14 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-10 [154 kB] Get:15 http://localhost/debian/ unstable/main libsigsegv2 amd64 2.9-4 [28.9 kB] Get:16 http://localhost/debian/ unstable/main m4 amd64 1.4.16-4 [260 kB] Get:17 http://localhost/debian/ unstable/main autoconf all 2.69-1 [589 kB] Get:18 http://localhost/debian/ unstable/main autotools-dev all 20120608.1 [73.0 kB] Get:19 http://localhost/debian/ unstable/main automake all 1:1.11.6-1 [607 kB] Get:20 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:21 http://localhost/debian/ unstable/main libasprintf-dev amd64 0.18.1.1-10 [26.8 kB] Get:22 http://localhost/debian/ unstable/main libgettextpo-dev amd64 0.18.1.1-10 [184 kB] Get:23 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-10 [1815 kB] Get:24 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:25 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:26 http://localhost/debian/ unstable/main debhelper all 9.20120909 [705 kB] Get:27 http://localhost/debian/ unstable/main libtool amd64 2.4.2-1.2 [621 kB] Get:28 http://localhost/debian/ unstable/main dh-autoreconf all 7 [15.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.3 MB in 0s (22.3 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 14674 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-1_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.1-2_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.4_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.31-2_amd64.deb) ... Selecting previously unselected package libxml2:amd64. 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Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ... Selecting previously unselected package libtool. Unpacking libtool (from .../libtool_2.4.2-1.2_amd64.deb) ... Selecting previously unselected package dh-autoreconf. Unpacking dh-autoreconf (from .../dh-autoreconf_7_all.deb) ... Selecting previously unselected package sbuild-build-depends-ncbi-seg-dummy. Unpacking sbuild-build-depends-ncbi-seg-dummy (from .../sbuild-build-depends-ncbi-seg-dummy.deb) ... Processing triggers for mime-support ... Setting up libpipeline1:amd64 (1.2.2-1) ... Setting up groff-base (1.22.1-2) ... Setting up bsdmainutils (9.0.4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up libasprintf0c2:amd64 (0.18.1.1-10) ... Setting up libmagic1:amd64 (5.11-2) ... Setting up libpcre3:amd64 (1:8.31-2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.6-2) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-10) ... Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-10) ... Setting up libsigsegv2 (2.9-4) ... Setting up m4 (1.4.16-4) ... Setting up autoconf (2.69-1) ... Setting up autotools-dev (20120608.1) ... Setting up automake (1:1.11.6-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode Setting up html2text (1.3.2a-15) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ... Setting up gettext (0.18.1.1-10) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120909) ... Setting up libtool (2.4.2-1.2) ... Setting up dh-autoreconf (7) ... Setting up sbuild-build-depends-ncbi-seg-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-15 g++-4.7_4.7.2-19 gcc-4.6_4.6.3-15 gcc-4.7_4.7.2-19 libc6-dev_2.16-0experimental1 libstdc++6_4.8-20130123-1 libstdc++6-4.6-dev_4.6.3-15 libstdc++6-4.7-dev_4.7.2-19 linux-libc-dev_3.2.35-2 Package versions: apt_0.9.7.7 autoconf_2.69-1 automake_1:1.11.6-1 autotools-dev_20120608.1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-7.1 bsdmainutils_9.0.4 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 clang_3.2-1~exp5 clang-3.2_3.2-1~exp5 compiler-rt_3.2-1~exp5 coreutils_8.20-3 cpp_4:4.7.2-1 cpp-4.6_4.6.3-15 cpp-4.7_4.7.2-19 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 dh-autoreconf_7 diffutils_1:3.2-7 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-5 g++_4:4.7.2-1 g++-4.6_4.6.3-15 g++-4.7_4.7.2-19 gcc_4:4.7.2-1 gcc-4.4-base_4.4.7-3 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.3-15 gcc-4.6-base_4.6.3-15 gcc-4.7_4.7.2-19 gcc-4.7-base_4.7.2-19 gcc-4.8-base_4.8-20130123-1 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.1-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-39 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.7 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.16-0experimental1 libc6_2.16-0experimental1 libc6-dev_2.16-0experimental1 libclang-common-dev_3.2-1~exp5 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1 libcroco3_0.6.6-2 libdb5.1_5.1.29-5 libdpkg-perl_1.16.9 libexpat1_2.1.0-2 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-9.1 libgcc-4.7-dev_4.7.2-19 libgcc1_1:4.8-20130123-1 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libglib2.0-0_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.8-20130123-1 libgpm2_1.20.4-6 libitm1_4.8-20130123-1 libllvm3.2_3.2-2 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_5.11-2 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9+20130119-1 libncursesw5_5.9+20130119-1 libobjc-4.7-dev_4.7.2-19 libobjc4_4.8-20130123-1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.31-2 libpipeline1_1.2.2-1 libpython2.7-minimal_2.7.3-15 libpython2.7-stdlib_2.7.3-15 libquadmath0_4.8-20130123-1 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libsigsegv2_2.9-4 libslang2_2.2.4-15 libsqlite3-0_3.7.15.2-1 libss2_1.42.5-1 libssl1.0.0_1.0.1c-4 libstdc++6_4.8-20130123-1 libstdc++6-4.6-dev_4.6.3-15 libstdc++6-4.7-dev_4.7.2-19 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130119-1 libtool_2.4.2-1.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libxml2_2.8.0+dfsg1-7 linux-libc-dev_3.2.35-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 m4_1.4.16-4 make_3.81-8.2 man-db_2.6.3-3 mawk_1.3.3-17 mime-support_3.53~experimental2 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-17 perl-base_5.14.2-17 perl-modules_5.14.2-17 po-debconf_1.0.16+nmu2 python_2.7.3-10 python-minimal_2.7.3-10 python2.7_2.7.3-15 python2.7-minimal_2.7.3-15 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-seg-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1 sysv-rc_2.88dsf-39 sysvinit_2.88dsf-39 sysvinit-utils_2.88dsf-39 tar_1.26+dfsg-0.1 tzdata_2012j-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.3 vim_2:7.3.547-6 vim-common_2:7.3.547-6 vim-runtime_2:7.3.547-6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Jul 9 15:08:29 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-seg_0.0.20000620-1.dsc dpkg-source: info: extracting ncbi-seg in ncbi-seg-0.0.20000620 dpkg-source: info: unpacking ncbi-seg_0.0.20000620.orig.tar.gz dpkg-source: info: unpacking ncbi-seg_0.0.20000620-1.debian.tar.gz dpkg-source: info: applying makefile dpkg-source: info: applying example dpkg-source: info: applying seg.c dpkg-source: info: applying genwin.c dpkg-source: info: applying autotools dpkg-source: info: applying seg.pod Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-2bc34e6b-9ca2-4a19-9e17-6bf98b2ed4f2 SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package ncbi-seg dpkg-buildpackage: source version 0.0.20000620-1 dpkg-buildpackage: source changed by Laszlo Kajan dpkg-source --before-build ncbi-seg-0.0.20000620 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a debian/rules override_dh_autoreconf make[1]: Entering directory `/«PKGBUILDDIR»' dh_autoreconf -X./COPYING configure.ac:3: installing `./install-sh' configure.ac:3: installing `./missing' Makefile.am: installing `./INSTALL' Makefile.am: installing `./depcomp' make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_configure -a configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»' gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c seg.c In file included from seg.c:10: ./genwin.h:146:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern closedbase(); ~~~~~~ ^ ./genwin.h:149:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern closeseq(); ~~~~~~ ^ ./genwin.h:152:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern shiftwin(), closewin(); ~~~~~~ ^ ./genwin.h:152:20: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern shiftwin(), closewin(); ~~~~~~ ^ ./genwin.h:154:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern compon(), stateon(), enton(); ~~~~~~ ^ ./genwin.h:154:18: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern compon(), stateon(), enton(); ~~~~~~ ^ ./genwin.h:154:29: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern compon(), stateon(), enton(); ~~~~~~ ^ ./genwin.h:158:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern closemat(); ~~~~~~ ^ ./genwin.h:160:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern upper(), lower(), findchar(); ~~~~~~ ^ ./genwin.h:160:17: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern upper(), lower(), findchar(); ~~~~~~ ^ ./genwin.h:160:26: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern upper(), lower(), findchar(); ~~~~~~ ^ seg.c:49:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] main(argc, argv) ^~~~ seg.c:58:4: warning: implicit declaration of function 'genwininit' is invalid in C99 [-Wimplicit-function-declaration] genwininit(); ^ seg.c:60:4: warning: implicit declaration of function 'getparams' is invalid in C99 [-Wimplicit-function-declaration] getparams(argc, argv); ^ seg.c:61:4: warning: implicit declaration of function 'entropy_init' is invalid in C99 [-Wimplicit-function-declaration] entropy_init(window); ^ seg.c:72:7: warning: implicit declaration of function 'segseq' is invalid in C99 [-Wimplicit-function-declaration] segseq(seq, &segs, 0); ^ seg.c:73:7: warning: implicit declaration of function 'mergesegs' is invalid in C99 [-Wimplicit-function-declaration] mergesegs(seq, segs); ^ seg.c:75:22: warning: implicit declaration of function 'singreport' is invalid in C99 [-Wimplicit-function-declaration] if (singleseq) singreport(seq, segs); ^ seg.c:76:27: warning: implicit declaration of function 'prettyreport' is invalid in C99 [-Wimplicit-function-declaration] else if (prettyseq) prettyreport(seq, segs); ^ seg.c:77:28: warning: implicit declaration of function 'pretreereport' is invalid in C99 [-Wimplicit-function-declaration] else if (prettytree) pretreereport(seq, segs); ^ seg.c:78:12: warning: implicit declaration of function 'report' is invalid in C99 [-Wimplicit-function-declaration] else report(seq, segs); ^ seg.c:80:7: warning: implicit declaration of function 'freesegs' is invalid in C99 [-Wimplicit-function-declaration] freesegs(segs); ^ seg.c:90:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] getparams(argc, argv) ^~~~~~~~~ seg.c:103:7: warning: implicit declaration of function 'usage' is invalid in C99 [-Wimplicit-function-declaration] usage(); ^ seg.c:133:17: error: non-void function 'getparams' should return a value [-Wreturn-type] if (i==argc) return; ^ seg.c:137:14: warning: implicit declaration of function 'getopt' is invalid in C99 [-Wimplicit-function-declaration] while ((c=getopt(nargc, nargv, "m:olhaxpqc:nt:"))!=-1) ^ seg.c:205:4: error: non-void function 'getparams' should return a value [-Wreturn-type] return; ^ seg.c:210:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] segseq(seq, segs, offset) ^~~~~~ seg.c:223:17: error: non-void function 'segseq' should return a value [-Wreturn-type] if (H==NULL) return; ^ seg.c:233:16: warning: implicit declaration of function 'findlo' is invalid in C99 [-Wimplicit-function-declaration] loi = findlo(i, lowlim, H); ^ seg.c:234:16: warning: implicit declaration of function 'findhi' is invalid in C99 [-Wimplicit-function-declaration] hii = findhi(i, last, H); ^ seg.c:239:10: warning: implicit declaration of function 'trim' is invalid in C99 [-Wimplicit-function-declaration] trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); ^ seg.c:252:21: warning: implicit declaration of function 'appendseg' is invalid in C99 [-Wimplicit-function-declaration] else appendseg(*segs, leftsegs); ^ seg.c:273:14: warning: implicit declaration of function 'min' is invalid in C99 [-Wimplicit-function-declaration] i = min(hii, rightend+downset); ^ seg.c:280:4: error: non-void function 'segseq' should return a value [-Wreturn-type] return; ^ seg.c:312:31: warning: implicit declaration of function 'hasdash' is invalid in C99 [-Wimplicit-function-declaration] if (seq->punctuation && hasdash(win)) ^ seg.c:314:10: warning: implicit declaration of function 'shiftwin1' is invalid in C99 [-Wimplicit-function-declaration] shiftwin1(win); ^ seg.c:326:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] hasdash(win) ^~~~~~~ seg.c:343:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] findlo(i, limit, H) ^~~~~~ seg.c:360:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] findhi(i, limit, H) ^~~~~~ seg.c:377:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] trim(seq, leftend, rightend) ^~~~ seg.c:424:4: error: non-void function 'trim' should return a value [-Wreturn-type] return; ^ seg.c:507:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] mergesegs(seq, segs) ^~~~~~~~~ seg.c:514:18: error: non-void function 'mergesegs' should return a value [-Wreturn-type] if (overlaps) return; ^ seg.c:515:20: error: non-void function 'mergesegs' should return a value [-Wreturn-type] if (segs==NULL) return; ^ seg.c:548:4: error: non-void function 'mergesegs' should return a value [-Wreturn-type] return; ^ seg.c:553:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] report(seq, segs) ^~~~~~ seg.c:565:7: warning: implicit declaration of function 'seqout' is invalid in C99 [-Wimplicit-function-declaration] seqout(seq, hi, 1, seq->length); ^ seg.c:567:7: error: non-void function 'report' should return a value [-Wreturn-type] return; ^ seg.c:612:7: error: non-void function 'report' should return a value [-Wreturn-type] return; ^ seg.c:621:4: error: non-void function 'report' should return a value [-Wreturn-type] return; ^ seg.c:626:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] singreport(seq, segs) ^~~~~~~~~~ seg.c:663:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] prettyreport(seq, segs) ^~~~~~~~~~~~ seg.c:687:2: warning: implicit declaration of function 'space' is invalid in C99 [-Wimplicit-function-declaration] space(leftspace+1); ^ seg.c:718:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] pretreereport(seq, segs) ^~~~~~~~~~~~~ seg.c:811:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] space(len) ^~~~~ seg.c:832:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] seqout(seq, hilo, begin, end) ^~~~~~ seg.c:846:28: error: non-void function 'seqout' should return a value [-Wreturn-type] if (hionly && hilo==lo) return; ^ seg.c:847:28: error: non-void function 'seqout' should return a value [-Wreturn-type] if (loonly && hilo==hi) return; ^ seg.c:906:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] appendseg(segs, seg) ^~~~~~~~~ seg.c:925:4: error: non-void function 'appendseg' should return a value [-Wreturn-type] return; ^ seg.c:930:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] freesegs(segs) ^~~~~~~~ seg.c:945:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] usage() ^~~~~ 49 warnings and 14 errors generated. make[1]: *** [seg.o] Error 1 make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build: make -j1 returned exit code 2 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130128-0356 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 1156 Build-Time: 8 Distribution: unstable Fail-Stage: build Install-Time: 7 Job: ncbi-seg_0.0.20000620-1 Package: ncbi-seg Package-Time: 45 Source-Version: 0.0.20000620-1 Space: 1156 Status: attempted Version: 0.0.20000620-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20130128-0356 Build needed 00:00:45, 1156k disc space DC-Status: Failed 45.424349s DC-Time-Estimation: 45.424349 versus expected 1 (r/m: 44.424349 ; m: 1.0)