DC-Build-Header: rdkit 201303-1 / 2013-07-15 15:14:12 +0000 DC-Task: source:rdkit version:201303-1 architecture:any chroot:unstable esttime:2907 logfile:/tmp/rdkit_201303-1_unstable_clang.log modes:binary-only:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " rdkit_201303-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-10-235-40-9.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rdkit 201303-1clang1 (amd64) 15 Jul 2013 15:14 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rdkit Version: 201303-1clang1 Source Version: 201303-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/rdkit-1q_tTQ/rdkit-201303' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rdkit-1q_tTQ' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-2586b994-2fbf-406e-be1c-688e6b1a76e2' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [204 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:6 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:7 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:8 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [1809 B] Get:9 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:10 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [12.9 kB] Get:11 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [1809 B] Get:12 http://localhost:9999 unstable/main amd64 2013-07-14-0231.07.pdiff [14.9 kB] Get:13 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [12.9 kB] Get:14 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [1384 B] Get:15 http://localhost:9999 unstable/main amd64 2013-07-14-0231.07.pdiff [14.9 kB] Get:16 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [4670 B] Get:17 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [1384 B] Get:18 http://localhost:9999 unstable/main amd64 2013-07-14-0832.16.pdiff [1624 B] Get:19 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [4670 B] Get:20 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [337 B] Get:21 http://localhost:9999 unstable/main amd64 2013-07-14-0832.16.pdiff [1624 B] Get:22 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [11.4 kB] Get:23 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [337 B] Get:24 http://localhost:9999 unstable/main amd64 2013-07-14-1431.18.pdiff [8223 B] Get:25 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [11.4 kB] Get:26 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [887 B] Get:27 http://localhost:9999 unstable/main amd64 2013-07-14-1431.18.pdiff [8223 B] Get:28 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [9038 B] Get:29 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [887 B] Get:30 http://localhost:9999 unstable/main amd64 2013-07-14-2031.21.pdiff [9955 B] Get:31 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [9038 B] Get:32 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [2736 B] Get:33 http://localhost:9999 unstable/main amd64 2013-07-14-2031.21.pdiff [9955 B] Get:34 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [9715 B] Get:35 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [2736 B] Get:36 http://localhost:9999 unstable/main amd64 2013-07-15-0229.01.pdiff [12.7 kB] Get:37 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [9715 B] Get:38 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [2239 B] Get:39 http://localhost:9999 unstable/main amd64 2013-07-15-0229.01.pdiff [12.7 kB] Get:40 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [3273 B] Get:41 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [2239 B] Get:42 http://localhost:9999 unstable/main amd64 2013-07-15-0830.19.pdiff [3964 B] Get:43 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [3273 B] Get:44 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [1357 B] Get:45 http://localhost:9999 unstable/main amd64 2013-07-15-0830.19.pdiff [3964 B] Get:46 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [1357 B] Fetched 381 kB in 27s (13.6 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: initscripts sysv-rc sysvinit sysvinit-utils 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 405 kB of archives. After this operation, 20.5 kB disk space will be freed. Get:1 http://localhost:9999/debian/ unstable/main sysvinit amd64 2.88dsf-42 [134 kB] Get:2 http://localhost:9999/debian/ unstable/main sysv-rc all 2.88dsf-42 [80.4 kB] Get:3 http://localhost:9999/debian/ unstable/main sysvinit-utils amd64 2.88dsf-42 [103 kB] Get:4 http://localhost:9999/debian/ unstable/main initscripts amd64 2.88dsf-42 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 405 kB in 0s (1036 kB/s) (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysvinit 2.88dsf-41 (using .../sysvinit_2.88dsf-42_amd64.deb) ... Unpacking replacement sysvinit ... Setting up sysvinit (2.88dsf-42) ... Not restarting sysvinit (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysv-rc 2.88dsf-41 (using .../sysv-rc_2.88dsf-42_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace sysvinit-utils 2.88dsf-41 (using .../sysvinit-utils_2.88dsf-42_amd64.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.88dsf-42) ... Setting up sysv-rc (2.88dsf-42) ... (Reading database ... 13844 files and directories currently installed.) Preparing to replace initscripts 2.88dsf-41 (using .../initscripts_2.88dsf-42_amd64.deb) ... Removing unmodified and obsolete conffile /etc/init.d/mtab.sh ... Unpacking replacement initscripts ... Setting up initscripts (2.88dsf-42) ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/checkroot-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/rmnologin ... Installing new version of config file /etc/network/if-up.d/mountnfs ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'rdkit' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debichem/unstable/rdkit/ Need to get 13.6 MB of source archives. Get:1 http://localhost:9999/debian/ unstable/main rdkit 201303-1 (dsc) [1616 B] Get:2 http://localhost:9999/debian/ unstable/main rdkit 201303-1 (tar) [13.6 MB] Get:3 http://localhost:9999/debian/ unstable/main rdkit 201303-1 (diff) [6921 B] Fetched 13.6 MB in 0s (14.0 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Install of clang' Install of clang + apt-get update Hit http://localhost:9999 unstable InRelease Hit http://localhost:9999 unstable/main Sources/DiffIndex Hit http://localhost:9999 unstable/main amd64 Packages/DiffIndex Hit http://localhost:9999 unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.3 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev Suggested packages: libstdc++6-4.7-doc Recommended packages: llvm-3.3-dev python The following NEW packages will be installed: clang-3.3 libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 27.2 MB of archives. After this operation, 80.8 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.0.13-4 [21.6 kB] Get:2 http://localhost:9999/debian/ unstable/main libllvm3.3 amd64 1:3.3-3 [8575 kB] Get:3 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.8.1-6 [160 kB] Get:4 http://localhost:9999/debian/ unstable/main libstdc++6-4.7-dev amd64 4.7.3-5 [1695 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc-4.7-dev amd64 4.7.3-5 [719 kB] Get:6 http://localhost:9999/debian/ unstable/main libclang-common-3.3-dev amd64 1:3.3-3 [574 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.3 amd64 1:3.3-3 [4579 kB] Get:8 http://localhost:9999/debian/ unstable/main clang-3.3 amd64 1:3.3-3 [10.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.2 MB in 4s (5728 kB/s) Selecting previously unselected package libffi6:amd64. (Reading database ... 13843 files and directories currently installed.) Unpacking libffi6:amd64 (from .../libffi6_3.0.13-4_amd64.deb) ... Selecting previously unselected package libllvm3.3:amd64. Unpacking libllvm3.3:amd64 (from .../libllvm3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.8.1-6_amd64.deb) ... Selecting previously unselected package libstdc++6-4.7-dev:amd64. Unpacking libstdc++6-4.7-dev:amd64 (from .../libstdc++6-4.7-dev_4.7.3-5_amd64.deb) ... Selecting previously unselected package libobjc-4.7-dev:amd64. Unpacking libobjc-4.7-dev:amd64 (from .../libobjc-4.7-dev_4.7.3-5_amd64.deb) ... Selecting previously unselected package libclang-common-3.3-dev. Unpacking libclang-common-3.3-dev (from .../libclang-common-3.3-dev_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libclang1-3.3. Unpacking libclang1-3.3 (from .../libclang1-3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package clang-3.3. Unpacking clang-3.3 (from .../clang-3.3_1%3a3.3-3_amd64.deb) ... Setting up libffi6:amd64 (3.0.13-4) ... Setting up libllvm3.3:amd64 (1:3.3-3) ... Setting up libobjc4:amd64 (4.8.1-6) ... Setting up libstdc++6-4.7-dev:amd64 (4.7.3-5) ... Setting up libobjc-4.7-dev:amd64 (4.7.3-5) ... Setting up libclang-common-3.3-dev (1:3.3-3) ... Setting up libclang1-3.3 (1:3.3-3) ... Setting up clang-3.3 (1:3.3-3) ... Processing triggers for libc-bin ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 + ln -s clang++ g++-4.8 + ln -s clang gcc-4.8 + ln -s clang cpp-4.8 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'gcc-4.8 hold' + dpkg --set-selections + echo 'cpp-4.8 hold' + dpkg --set-selections + echo 'g++-4.8 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-l4TffI/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14698 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bison, cmake, debhelper (>= 7.0.50~), flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, python-dev, python-numpy, python-pandas, python-support Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bison, cmake, debhelper (>= 7.0.50~), flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, python-dev, python-numpy, python-pandas, python-support dpkg-deb: building package `sbuild-build-depends-rdkit-dummy' in `/«BUILDDIR»/resolver-McWjf8/apt_archive/sbuild-build-depends-rdkit-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rdkit build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bison bsdmainutils cmake cmake-data debhelper emacsen-common file flex gccxml gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libbison-dev libblas3 libboost-date-time1.49-dev libboost-date-time1.49.0 libboost-dev libboost-python-dev libboost-python1.49-dev libboost-python1.49.0 libboost-regex-dev libboost-regex1.49-dev libboost-regex1.49.0 libboost-serialization1.49-dev libboost-serialization1.49.0 libboost-system-dev libboost-system1.49-dev libboost-system1.49.0 libboost-thread-dev libboost-thread1.49-dev libboost-thread1.49.0 libboost1.49-dev libcroco3 libcurl3-gnutls libexpat1 libexpat1-dev libgcrypt11 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libicu-dev libicu48 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 liblzo2-2 libmagic1 libncursesw5 libnettle4 libp11-kit0 libpipeline1 libprocps1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp0 libsasl2-2 libsasl2-modules libsigsegv2 libsqlite3-0 libsqlite3-dev libssh2-1 libssl1.0.0 libtasn1-3 libunistring0 libxml2 m4 man-db mime-support po-debconf procps python python-dateutil python-dev python-minimal python-numpy python-pandas python-pandas-lib python-support python-tz python2.7 python2.7-dev python2.7-minimal Suggested packages: bison-doc wamerican wordlist whois vacation codeblocks eclipse dh-make gettext-doc groff lrzip libboost-doc libboost1.49-doc python3 libboost-chrono1.49-dev libboost-filesystem1.49-dev libboost-graph-parallel1.49-dev libboost-graph1.49-dev libboost-iostreams1.49-dev libboost-locale1.49-dev libboost-math1.49-dev libboost-mpi1.49-dev libboost-program-options1.49-dev libboost-random1.49-dev libboost-signals1.49-dev libboost-test1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop rng-tools krb5-doc krb5-user icu-doc libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal sqlite3-doc less www-browser libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg python-nose gfortran python-pandas-doc python2.7-doc binfmt-support Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev ca-certificates libglib2.0-data shared-mime-info krb5-locales xml-core libmail-sendmail-perl psmisc python-scipy python-matplotlib python-tables python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt The following NEW packages will be installed: bison bsdmainutils cmake cmake-data debhelper emacsen-common file flex gccxml gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libbison-dev libblas3 libboost-date-time1.49-dev libboost-date-time1.49.0 libboost-dev libboost-python-dev libboost-python1.49-dev libboost-python1.49.0 libboost-regex-dev libboost-regex1.49-dev libboost-regex1.49.0 libboost-serialization1.49-dev libboost-serialization1.49.0 libboost-system-dev libboost-system1.49-dev libboost-system1.49.0 libboost-thread-dev libboost-thread1.49-dev libboost-thread1.49.0 libboost1.49-dev libcroco3 libcurl3-gnutls libexpat1 libexpat1-dev libgcrypt11 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libicu-dev libicu48 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 liblzo2-2 libmagic1 libncursesw5 libnettle4 libp11-kit0 libpipeline1 libprocps1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp0 libsasl2-2 libsasl2-modules libsigsegv2 libsqlite3-0 libsqlite3-dev libssh2-1 libssl1.0.0 libtasn1-3 libunistring0 libxml2 m4 man-db mime-support po-debconf procps python python-dateutil python-dev python-minimal python-numpy python-pandas python-pandas-lib python-support python-tz python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-rdkit-dummy 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 91.3 MB/91.3 MB of archives. After this operation, 315 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libncursesw5 amd64 5.9+20130608-1 [141 kB] Get:2 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.2.4-1 [41.0 kB] Get:3 http://localhost:9999/debian/ unstable/main libprocps1 amd64 1:3.3.8-2 [59.8 kB] Get:4 http://localhost:9999/debian/ unstable/main libssl1.0.0 amd64 1.0.1e-3 [1242 kB] Get:5 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-3 [747 kB] Get:6 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:7 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.5-2 [976 kB] Get:8 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.18.2.1-1 [28.9 kB] Get:9 http://localhost:9999/debian/ unstable/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:10 http://localhost:9999/debian/ unstable/main libgcrypt11 amd64 1.5.2-3 [296 kB] Get:11 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.18.4-1 [115 kB] Get:12 http://localhost:9999/debian/ unstable/main libtasn1-3 amd64 2.14-3 [68.5 kB] Get:13 http://localhost:9999/debian/ unstable/main libgnutls26 amd64 2.12.23-5 [617 kB] Get:14 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.5-7 [8808 B] Get:15 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.10.1+dfsg-6.1 [49.3 kB] Get:16 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.10.1+dfsg-6.1 [112 kB] Get:17 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.10.1+dfsg-6.1 [392 kB] Get:18 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.10.1+dfsg-6.1 [147 kB] Get:19 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.25-2 [178 kB] Get:20 http://localhost:9999/debian/ unstable/main libsasl2-modules amd64 2.1.25.dfsg1-13 [123 kB] Get:21 http://localhost:9999/debian/ unstable/main libsasl2-2 amd64 2.1.25.dfsg1-13 [109 kB] Get:22 http://localhost:9999/debian/ unstable/main libldap-2.4-2 amd64 2.4.31-1+nmu2 [243 kB] Get:23 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.14-2 [216 kB] Get:24 http://localhost:9999/debian/ unstable/main libsqlite3-0 amd64 3.7.17-1 [478 kB] Get:25 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-2 [911 kB] Get:26 http://localhost:9999/debian/ unstable/main libsigsegv2 amd64 2.10-2 [29.8 kB] Get:27 http://localhost:9999/debian/ unstable/main m4 amd64 1.4.16-5 [260 kB] Get:28 http://localhost:9999/debian/ unstable/main flex amd64 2.5.35-10.1 [332 kB] Get:29 http://localhost:9999/debian/ unstable/main liblzo2-2 amd64 2.06-1 [57.7 kB] Get:30 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-1 [189 kB] Get:31 http://localhost:9999/debian/ unstable/main libarchive13 amd64 3.1.2-7 [319 kB] Get:32 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.36.3-3 [2048 kB] Get:33 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-2 [133 kB] Get:34 http://localhost:9999/debian/ unstable/main librtmp0 amd64 2.4+20121230.gitdf6c518-1 [62.3 kB] Get:35 http://localhost:9999/debian/ unstable/main libssh2-1 amd64 1.4.3-1 [135 kB] Get:36 http://localhost:9999/debian/ unstable/main libcurl3-gnutls amd64 7.31.0-2 [279 kB] Get:37 http://localhost:9999/debian/ unstable/main libexpat1 amd64 2.1.0-4 [138 kB] Get:38 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.8.1-6 [345 kB] Get:39 http://localhost:9999/debian/ unstable/main libicu48 amd64 4.8.1.1-12 [4734 kB] Get:40 http://localhost:9999/debian/ unstable/main libpython2.7-minimal amd64 2.7.5-6 [520 kB] Get:41 http://localhost:9999/debian/ unstable/main mime-support all 3.54 [36.4 kB] Get:42 http://localhost:9999/debian/ unstable/main libpython2.7-stdlib amd64 2.7.5-6 [2482 kB] Get:43 http://localhost:9999/debian/ unstable/main libpython2.7 amd64 2.7.5-6 [1361 kB] Get:44 http://localhost:9999/debian/ unstable/main libexpat1-dev amd64 2.1.0-4 [223 kB] Get:45 http://localhost:9999/debian/ unstable/main libpython2.7-dev amd64 2.7.5-6 [23.5 MB] Get:46 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:47 http://localhost:9999/debian/ unstable/main python2.7-minimal amd64 2.7.5-6 [1552 kB] Get:48 http://localhost:9999/debian/ unstable/main procps amd64 1:3.3.8-2 [274 kB] Get:49 http://localhost:9999/debian/ unstable/main file amd64 1:5.14-2 [54.0 kB] Get:50 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.18.2.1-1 [156 kB] Get:51 http://localhost:9999/debian/ unstable/main python2.7 amd64 2.7.5-6 [229 kB] Get:52 http://localhost:9999/debian/ unstable/main python-minimal amd64 2.7.5-2 [42.7 kB] Get:53 http://localhost:9999/debian/ unstable/main libpython-stdlib amd64 2.7.5-2 [19.6 kB] Get:54 http://localhost:9999/debian/ unstable/main python amd64 2.7.5-2 [186 kB] Get:55 http://localhost:9999/debian/ unstable/main python-support all 1.0.15 [33.6 kB] Get:56 http://localhost:9999/debian/ unstable/main libbison-dev amd64 2:2.7.1.dfsg-1 [346 kB] Get:57 http://localhost:9999/debian/ unstable/main bison amd64 2:2.7.1.dfsg-1 [789 kB] Get:58 http://localhost:9999/debian/ unstable/main emacsen-common all 2.0.5 [20.9 kB] Get:59 http://localhost:9999/debian/ unstable/main cmake-data all 2.8.11.2-1 [1397 kB] Get:60 http://localhost:9999/debian/ unstable/main cmake amd64 2.8.11.2-1 [5129 kB] Get:61 http://localhost:9999/debian/ unstable/main gettext amd64 0.18.2.1-1 [2019 kB] Get:62 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:63 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:64 http://localhost:9999/debian/ unstable/main debhelper all 9.20130630 [710 kB] Get:65 http://localhost:9999/debian/ unstable/main gccxml amd64 0.9.0+git20130511-1 [4371 kB] Get:66 http://localhost:9999/debian/ unstable/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:67 http://localhost:9999/debian/ unstable/main libboost1.49-dev amd64 1.49.0-4 [9195 kB] Get:68 http://localhost:9999/debian/ unstable/main libboost-date-time1.49.0 amd64 1.49.0-4 [45.9 kB] Get:69 http://localhost:9999/debian/ unstable/main libboost-serialization1.49.0 amd64 1.49.0-4 [207 kB] Get:70 http://localhost:9999/debian/ unstable/main libboost-serialization1.49-dev amd64 1.49.0-4 [316 kB] Get:71 http://localhost:9999/debian/ unstable/main libboost-date-time1.49-dev amd64 1.49.0-4 [49.5 kB] Get:72 http://localhost:9999/debian/ unstable/main libboost-dev amd64 1.49.0.1 [3022 B] Get:73 http://localhost:9999/debian/ unstable/main libboost-python1.49.0 amd64 1.49.0-4 [347 kB] Get:74 http://localhost:9999/debian/ unstable/main libpython-dev amd64 2.7.5-2 [19.6 kB] Get:75 http://localhost:9999/debian/ unstable/main python2.7-dev amd64 2.7.5-6 [288 kB] Get:76 http://localhost:9999/debian/ unstable/main python-dev amd64 2.7.5-2 [1068 B] Get:77 http://localhost:9999/debian/ unstable/main libboost-python1.49-dev amd64 1.49.0-4 [495 kB] Get:78 http://localhost:9999/debian/ unstable/main libboost-python-dev amd64 1.49.0.1 [3108 B] Get:79 http://localhost:9999/debian/ unstable/main libboost-regex1.49.0 amd64 1.49.0-4 [441 kB] Get:80 http://localhost:9999/debian/ unstable/main libicu-dev amd64 4.8.1.1-12 [5706 kB] Get:81 http://localhost:9999/debian/ unstable/main libboost-regex1.49-dev amd64 1.49.0-4 [656 kB] Get:82 http://localhost:9999/debian/ unstable/main libboost-regex-dev amd64 1.49.0.1 [2970 B] Get:83 http://localhost:9999/debian/ unstable/main libboost-system1.49.0 amd64 1.49.0-4 [33.0 kB] Get:84 http://localhost:9999/debian/ unstable/main libboost-system1.49-dev amd64 1.49.0-4 [34.8 kB] Get:85 http://localhost:9999/debian/ unstable/main libboost-system-dev amd64 1.49.0.1 [2850 B] Get:86 http://localhost:9999/debian/ unstable/main libboost-thread1.49.0 amd64 1.49.0-4 [59.9 kB] Get:87 http://localhost:9999/debian/ unstable/main libboost-thread1.49-dev amd64 1.49.0-4 [67.1 kB] Get:88 http://localhost:9999/debian/ unstable/main libboost-thread-dev amd64 1.49.0.1 [2736 B] Get:89 http://localhost:9999/debian/ unstable/main liblapack3 amd64 3.4.2+dfsg-1 [5088 kB] Get:90 http://localhost:9999/debian/ unstable/main libsqlite3-dev amd64 3.7.17-1 [608 kB] Get:91 http://localhost:9999/debian/ unstable/main python-dateutil all 1.5+dfsg-0.1 [55.3 kB] Get:92 http://localhost:9999/debian/ unstable/main python-numpy amd64 1:1.7.1-2 [2013 kB] Get:93 http://localhost:9999/debian/ unstable/main python-tz all 2012c-1 [39.9 kB] Get:94 http://localhost:9999/debian/ unstable/main python-pandas-lib amd64 0.11.0-2 [1497 kB] Get:95 http://localhost:9999/debian/ unstable/main python-pandas all 0.11.0-2 [947 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 91.3 MB in 21s (4256 kB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 14698 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9+20130608-1_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.4-1_amd64.deb) ... Selecting previously unselected package libprocps1:amd64. Unpacking libprocps1:amd64 (from .../libprocps1_1%3a3.3.8-2_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.2.1-1_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.2-3_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.18.4-1_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.14-3_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.23-5_amd64.deb) ... Selecting previously unselected package libkeyutils1:amd64. Unpacking libkeyutils1:amd64 (from .../libkeyutils1_1.5.5-7_amd64.deb) ... Selecting previously unselected package libkrb5support0:amd64. Unpacking libkrb5support0:amd64 (from .../libkrb5support0_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libk5crypto3:amd64. Unpacking libk5crypto3:amd64 (from .../libk5crypto3_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libkrb5-3:amd64. Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libidn11:amd64. Unpacking libidn11:amd64 (from .../libidn11_1.25-2_amd64.deb) ... Selecting previously unselected package libsasl2-modules:amd64. Unpacking libsasl2-modules:amd64 (from .../libsasl2-modules_2.1.25.dfsg1-13_amd64.deb) ... Selecting previously unselected package libsasl2-2:amd64. Unpacking libsasl2-2:amd64 (from .../libsasl2-2_2.1.25.dfsg1-13_amd64.deb) ... Selecting previously unselected package libldap-2.4-2:amd64. Unpacking libldap-2.4-2:amd64 (from .../libldap-2.4-2_2.4.31-1+nmu2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.17-1_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.9.1+dfsg1-2_amd64.deb) ... Selecting previously unselected package libsigsegv2:amd64. Unpacking libsigsegv2:amd64 (from .../libsigsegv2_2.10-2_amd64.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../archives/m4_1.4.16-5_amd64.deb) ... Selecting previously unselected package flex. Unpacking flex (from .../flex_2.5.35-10.1_amd64.deb) ... Selecting previously unselected package liblzo2-2:amd64. Unpacking liblzo2-2:amd64 (from .../liblzo2-2_2.06-1_amd64.deb) ... Selecting previously unselected package libnettle4:amd64. Unpacking libnettle4:amd64 (from .../libnettle4_2.7.1-1_amd64.deb) ... Selecting previously unselected package libarchive13:amd64. Unpacking libarchive13:amd64 (from .../libarchive13_3.1.2-7_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.36.3-3_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.8-2_amd64.deb) ... Selecting previously unselected package librtmp0:amd64. Unpacking librtmp0:amd64 (from .../librtmp0_2.4+20121230.gitdf6c518-1_amd64.deb) ... Selecting previously unselected package libssh2-1:amd64. Unpacking libssh2-1:amd64 (from .../libssh2-1_1.4.3-1_amd64.deb) ... Selecting previously unselected package libcurl3-gnutls:amd64. Unpacking libcurl3-gnutls:amd64 (from .../libcurl3-gnutls_7.31.0-2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-4_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.8.1-6_amd64.deb) ... Selecting previously unselected package libicu48:amd64. Unpacking libicu48:amd64 (from .../libicu48_4.8.1.1-12_amd64.deb) ... Selecting previously unselected package libpython2.7-minimal. Unpacking libpython2.7-minimal (from .../libpython2.7-minimal_2.7.5-6_amd64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54_all.deb) ... Selecting previously unselected package libpython2.7-stdlib. Unpacking libpython2.7-stdlib (from .../libpython2.7-stdlib_2.7.5-6_amd64.deb) ... Selecting previously unselected package libpython2.7. Unpacking libpython2.7 (from .../libpython2.7_2.7.5-6_amd64.deb) ... Selecting previously unselected package libexpat1-dev:amd64. Unpacking libexpat1-dev:amd64 (from .../libexpat1-dev_2.1.0-4_amd64.deb) ... Selecting previously unselected package libpython2.7-dev. Unpacking libpython2.7-dev (from .../libpython2.7-dev_2.7.5-6_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package python2.7-minimal. Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.5-6_amd64.deb) ... Selecting previously unselected package procps. Unpacking procps (from .../procps_1%3a3.3.8-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.2.1-1_amd64.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.5-6_amd64.deb) ... Selecting previously unselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.7.5-2_amd64.deb) ... Selecting previously unselected package libpython-stdlib:amd64. Unpacking libpython-stdlib:amd64 (from .../libpython-stdlib_2.7.5-2_amd64.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.5-2_amd64.deb) ... Selecting previously unselected package python-support. Unpacking python-support (from .../python-support_1.0.15_all.deb) ... Selecting previously unselected package libbison-dev:amd64. Unpacking libbison-dev:amd64 (from .../libbison-dev_2%3a2.7.1.dfsg-1_amd64.deb) ... Selecting previously unselected package bison. Unpacking bison (from .../bison_2%3a2.7.1.dfsg-1_amd64.deb) ... Selecting previously unselected package emacsen-common. Unpacking emacsen-common (from .../emacsen-common_2.0.5_all.deb) ... Selecting previously unselected package cmake-data. Unpacking cmake-data (from .../cmake-data_2.8.11.2-1_all.deb) ... Selecting previously unselected package cmake. Unpacking cmake (from .../cmake_2.8.11.2-1_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.2.1-1_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130630_all.deb) ... Selecting previously unselected package gccxml. Unpacking gccxml (from .../gccxml_0.9.0+git20130511-1_amd64.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ... Selecting previously unselected package libboost1.49-dev. Unpacking libboost1.49-dev (from .../libboost1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-date-time1.49.0. Unpacking libboost-date-time1.49.0 (from .../libboost-date-time1.49.0_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-serialization1.49.0. Unpacking libboost-serialization1.49.0 (from .../libboost-serialization1.49.0_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-serialization1.49-dev. Unpacking libboost-serialization1.49-dev (from .../libboost-serialization1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-date-time1.49-dev. Unpacking libboost-date-time1.49-dev (from .../libboost-date-time1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-dev. Unpacking libboost-dev (from .../libboost-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libboost-python1.49.0. Unpacking libboost-python1.49.0 (from .../libboost-python1.49.0_1.49.0-4_amd64.deb) ... Selecting previously unselected package libpython-dev:amd64. Unpacking libpython-dev:amd64 (from .../libpython-dev_2.7.5-2_amd64.deb) ... Selecting previously unselected package python2.7-dev. Unpacking python2.7-dev (from .../python2.7-dev_2.7.5-6_amd64.deb) ... Selecting previously unselected package python-dev. Unpacking python-dev (from .../python-dev_2.7.5-2_amd64.deb) ... Selecting previously unselected package libboost-python1.49-dev. Unpacking libboost-python1.49-dev (from .../libboost-python1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-python-dev. Unpacking libboost-python-dev (from .../libboost-python-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libboost-regex1.49.0. Unpacking libboost-regex1.49.0 (from .../libboost-regex1.49.0_1.49.0-4_amd64.deb) ... Selecting previously unselected package libicu-dev. Unpacking libicu-dev (from .../libicu-dev_4.8.1.1-12_amd64.deb) ... Selecting previously unselected package libboost-regex1.49-dev. Unpacking libboost-regex1.49-dev (from .../libboost-regex1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-regex-dev. Unpacking libboost-regex-dev (from .../libboost-regex-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libboost-system1.49.0. Unpacking libboost-system1.49.0 (from .../libboost-system1.49.0_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-system1.49-dev. Unpacking libboost-system1.49-dev (from .../libboost-system1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-system-dev. Unpacking libboost-system-dev (from .../libboost-system-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libboost-thread1.49.0. Unpacking libboost-thread1.49.0 (from .../libboost-thread1.49.0_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-thread1.49-dev. Unpacking libboost-thread1.49-dev (from .../libboost-thread1.49-dev_1.49.0-4_amd64.deb) ... Selecting previously unselected package libboost-thread-dev. Unpacking libboost-thread-dev (from .../libboost-thread-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package liblapack3. Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_amd64.deb) ... Selecting previously unselected package libsqlite3-dev:amd64. Unpacking libsqlite3-dev:amd64 (from .../libsqlite3-dev_3.7.17-1_amd64.deb) ... Selecting previously unselected package python-dateutil. Unpacking python-dateutil (from .../python-dateutil_1.5+dfsg-0.1_all.deb) ... Selecting previously unselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.7.1-2_amd64.deb) ... Selecting previously unselected package python-tz. Unpacking python-tz (from .../python-tz_2012c-1_all.deb) ... Selecting previously unselected package python-pandas-lib. Unpacking python-pandas-lib (from .../python-pandas-lib_0.11.0-2_amd64.deb) ... Selecting previously unselected package python-pandas. Unpacking python-pandas (from .../python-pandas_0.11.0-2_all.deb) ... Selecting previously unselected package sbuild-build-depends-rdkit-dummy. Unpacking sbuild-build-depends-rdkit-dummy (from .../sbuild-build-depends-rdkit-dummy.deb) ... Setting up libncursesw5:amd64 (5.9+20130608-1) ... Setting up libpipeline1:amd64 (1.2.4-1) ... Setting up libprocps1:amd64 (1:3.3.8-2) ... Setting up libssl1.0.0:amd64 (1.0.1e-3) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.18.2.1-1) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.2-3) ... Setting up libp11-kit0:amd64 (0.18.4-1) ... Setting up libtasn1-3:amd64 (2.14-3) ... Setting up libgnutls26:amd64 (2.12.23-5) ... Setting up libkeyutils1:amd64 (1.5.5-7) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-6.1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-6.1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-6.1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-6.1) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-13) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-13) ... Setting up libldap-2.4-2:amd64 (2.4.31-1+nmu2) ... Setting up libmagic1:amd64 (1:5.14-2) ... Setting up libsqlite3-0:amd64 (3.7.17-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-2) ... Setting up libsigsegv2:amd64 (2.10-2) ... Setting up m4 (1.4.16-5) ... Setting up flex (2.5.35-10.1) ... Setting up liblzo2-2:amd64 (2.06-1) ... Setting up libnettle4:amd64 (2.7.1-1) ... Setting up libarchive13:amd64 (3.1.2-7) ... Setting up libglib2.0-0:amd64 (2.36.3-3) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up librtmp0:amd64 (2.4+20121230.gitdf6c518-1) ... Setting up libssh2-1:amd64 (1.4.3-1) ... Setting up libcurl3-gnutls:amd64 (7.31.0-2) ... Setting up libexpat1:amd64 (2.1.0-4) ... Setting up libgfortran3:amd64 (4.8.1-6) ... Setting up libicu48:amd64 (4.8.1.1-12) ... Setting up libpython2.7-minimal (2.7.5-6) ... Setting up mime-support (3.54) ... Setting up libpython2.7-stdlib (2.7.5-6) ... Setting up libpython2.7 (2.7.5-6) ... Setting up libexpat1-dev:amd64 (2.1.0-4) ... Setting up libpython2.7-dev (2.7.5-6) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up python2.7-minimal (2.7.5-6) ... Setting up procps (1:3.3.8-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up file (1:5.14-2) ... Setting up gettext-base (0.18.2.1-1) ... Setting up python2.7 (2.7.5-6) ... Setting up python-minimal (2.7.5-2) ... Setting up libpython-stdlib:amd64 (2.7.5-2) ... Setting up python (2.7.5-2) ... Setting up python-support (1.0.15) ... Setting up libbison-dev:amd64 (2:2.7.1.dfsg-1) ... Setting up bison (2:2.7.1.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up emacsen-common (2.0.5) ... Setting up cmake-data (2.8.11.2-1) ... Install cmake-data for emacs Setting up cmake (2.8.11.2-1) ... Setting up gettext (0.18.2.1-1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20130630) ... Setting up gccxml (0.9.0+git20130511-1) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libboost1.49-dev (1.49.0-4) ... Setting up libboost-date-time1.49.0 (1.49.0-4) ... Setting up libboost-serialization1.49.0 (1.49.0-4) ... Setting up libboost-serialization1.49-dev (1.49.0-4) ... Setting up libboost-date-time1.49-dev (1.49.0-4) ... Setting up libboost-dev (1.49.0.1) ... Setting up libboost-python1.49.0 (1.49.0-4) ... Setting up libpython-dev:amd64 (2.7.5-2) ... Setting up python2.7-dev (2.7.5-6) ... Setting up python-dev (2.7.5-2) ... Setting up libboost-python1.49-dev (1.49.0-4) ... Setting up libboost-python-dev (1.49.0.1) ... Setting up libboost-regex1.49.0 (1.49.0-4) ... Setting up libicu-dev (4.8.1.1-12) ... Setting up libboost-regex1.49-dev (1.49.0-4) ... Setting up libboost-regex-dev (1.49.0.1) ... Setting up libboost-system1.49.0 (1.49.0-4) ... Setting up libboost-system1.49-dev (1.49.0-4) ... Setting up libboost-system-dev (1.49.0.1) ... Setting up libboost-thread1.49.0 (1.49.0-4) ... Setting up libboost-thread1.49-dev (1.49.0-4) ... Setting up libboost-thread-dev (1.49.0.1) ... Setting up liblapack3 (3.4.2+dfsg-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libsqlite3-dev:amd64 (3.7.17-1) ... Setting up python-dateutil (1.5+dfsg-0.1) ... Setting up python-numpy (1:1.7.1-2) ... Setting up python-tz (2012c-1) ... Setting up python-pandas-lib (0.11.0-2) ... Setting up python-pandas (0.11.0-2) ... Setting up sbuild-build-depends-rdkit-dummy (0.invalid.0) ... Processing triggers for libc-bin ... Processing triggers for python-support ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.23.52.20130620-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc-4.6_4.6.4-4 gcc-4.7_4.7.3-5 gcc-4.8_4.8.1-6 libc6-dev_2.17-7 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-5 linux-libc-dev_3.9.8-1 Package versions: apt_0.9.9.1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130620-1 bison_2:2.7.1.dfsg-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-4 clang-3.3_1:3.3-3 cmake_2.8.11.2-1 cmake-data_2.8.11.2-1 coreutils_8.20-3 cpp_4:4.8.1-2 cpp-4.6_4.6.4-4 cpp-4.7_4.7.3-5 cpp-4.8_4.8.1-6 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 emacsen-common_2.0.5 fakeroot_1.19-2 file_1:5.14-2 findutils_4.4.2-6 flex_2.5.35-10.1 g++_4:4.8.1-2 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc_4:4.8.1-2 gcc-4.4-base_4.4.7-4 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-4 gcc-4.6-base_4.6.4-4 gcc-4.7_4.7.3-5 gcc-4.7-base_4.7.3-5 gcc-4.8_4.8.1-6 gcc-4.8-base_4.8.1-6 gccxml_0.9.0+git20130511-1 gettext_0.18.2.1-1 gettext-base_0.18.2.1-1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hostname_3.13 initscripts_2.88dsf-42 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.52-1 libapt-pkg4.12_0.9.9.1 libarchive13_3.1.2-7 libasan0_4.8.1-6 libasprintf0c2_0.18.2.1-1 libatomic1_4.8.1-6 libattr1_1:2.4.47-1 libbison-dev_2:2.7.1.dfsg-1 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.5 libboost-date-time1.49-dev_1.49.0-4 libboost-date-time1.49.0_1.49.0-4 libboost-dev_1.49.0.1 libboost-python-dev_1.49.0.1 libboost-python1.49-dev_1.49.0-4 libboost-python1.49.0_1.49.0-4 libboost-regex-dev_1.49.0.1 libboost-regex1.49-dev_1.49.0-4 libboost-regex1.49.0_1.49.0-4 libboost-serialization1.49-dev_1.49.0-4 libboost-serialization1.49.0_1.49.0-4 libboost-system-dev_1.49.0.1 libboost-system1.49-dev_1.49.0-4 libboost-system1.49.0_1.49.0-4 libboost-thread-dev_1.49.0.1 libboost-thread1.49-dev_1.49.0-4 libboost-thread1.49.0_1.49.0-4 libboost1.49-dev_1.49.0-4 libbz2-1.0_1.0.6-4 libc-bin_2.17-7 libc-dev-bin_2.17-7 libc6_2.17-7 libc6-dev_2.17-7 libcap2_1:2.22-1.2 libclang-common-3.3-dev_1:3.3-3 libclang1-3.3_1:3.3-3 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.0-2 libcloog-ppl1_0.16.1-3 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libcurl3-gnutls_7.31.0-2 libdb5.1_5.1.29-6 libdpkg-perl_1.16.10 libexpat1_2.1.0-4 libexpat1-dev_2.1.0-4 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.2d-5 libgcc-4.7-dev_4.7.3-5 libgcc-4.8-dev_4.8.1-6 libgcc1_1:4.8.1-6 libgcrypt11_1.5.2-3 libgdbm3_1.8.3-12 libgfortran3_4.8.1-6 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-2 libgmpxx4ldbl_2:5.1.2+dfsg-2 libgnutls26_2.12.23-5 libgomp1_4.8.1-6 libgpg-error0_1.10-3.1 libgpm2_1.20.4-6.1 libgssapi-krb5-2_1.10.1+dfsg-6.1 libicu-dev_4.8.1.1-12 libicu48_4.8.1.1-12 libidn11_1.25-2 libisl10_0.11.2-1 libitm1_4.8.1-6 libk5crypto3_1.10.1+dfsg-6.1 libkeyutils1_1.5.5-7 libkrb5-3_1.10.1+dfsg-6.1 libkrb5support0_1.10.1+dfsg-6.1 liblapack3_3.4.2+dfsg-1 libldap-2.4-2_2.4.31-1+nmu2 libllvm3.3_1:3.3-3 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.06-1 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnettle4_2.7.1-1 libobjc-4.7-dev_4.7.3-5 libobjc4_4.8.1-6 libp11-kit0_0.18.4-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libprocps1_1:3.3.8-2 libpython-dev_2.7.5-2 libpython-stdlib_2.7.5-2 libpython2.7_2.7.5-6 libpython2.7-dev_2.7.5-6 libpython2.7-minimal_2.7.5-6 libpython2.7-stdlib_2.7.5-6 libquadmath0_4.8.1-6 libreadline6_6.2+dfsg-0.1 librtmp0_2.4+20121230.gitdf6c518-1 libsasl2-2_2.1.25.dfsg1-13 libsasl2-modules_2.1.25.dfsg1-13 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libsigsegv2_2.10-2 libslang2_2.2.4-15 libsqlite3-0_3.7.17-1 libsqlite3-dev_3.7.17-1 libss2_1.42.8-1 libssh2-1_1.4.3-1 libssl1.0.0_1.0.1e-3 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-5 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libtsan0_4.8.1-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-2 linux-libc-dev_3.9.8-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12 m4_1.4.16-5 make_3.81-8.2 man-db_2.6.5-2 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 multiarch-support_2.17-7 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 procps_1:3.3.8-2 python_2.7.5-2 python-dateutil_1.5+dfsg-0.1 python-dev_2.7.5-2 python-minimal_2.7.5-2 python-numpy_1:1.7.1-2 python-pandas_0.11.0-2 python-pandas-lib_0.11.0-2 python-support_1.0.15 python-tz_2012c-1 python2.7_2.7.5-6 python2.7-dev_2.7.5-6 python2.7-minimal_2.7.5-6 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rdkit-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-42 sysvinit_2.88dsf-42 sysvinit-utils_2.88dsf-42 tar_1.26+dfsg-6 tzdata_2013c-2 ucf_3.0027+nmu1 util-linux_2.20.1-5.5 vim_2:7.3.923-3 vim-common_2:7.3.923-3 vim-runtime_2:7.3.923-3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat May 25 11:18:56 2013 UTC using DSA key ID 088F6B8C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rdkit_201303-1.dsc dpkg-source: info: extracting rdkit in rdkit-201303 dpkg-source: info: unpacking rdkit_201303.orig.tar.gz dpkg-source: info: unpacking rdkit_201303-1.debian.tar.gz dpkg-source: info: applying fix_ftbfs_mtsss.patch Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 201303-1clang1 User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-2586b994-2fbf-406e-be1c-688e6b1a76e2 SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package rdkit dpkg-buildpackage: source version 201303-1clang1 dpkg-source --before-build rdkit-201303 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --buildsystem=cmake --parallel dh_testdir -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' find /«PKGBUILDDIR» -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ Code/RDGeneral/versions.h rdkit/Chem/inchi.py dh_auto_clean make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean -O--buildsystem=cmake -O--parallel debian/rules build-arch dh build-arch --with python2 --buildsystem=cmake --parallel dh_testdir -a -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF \ -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -- The C compiler identification is Clang 3.3.0 -- The CXX compiler identification is Clang 3.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.5+") -- Found PythonInterp: /usr/bin/python (found version "2.7.5") -- Boost version: 1.49.0 -- Found the following Boost libraries: -- python Python Install directory /usr/lib/python2.7/dist-packages -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.49.0 -- Found the following Boost libraries: -- thread -- system -- python -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex -- Boost version: 1.49.0 -- Found the following Boost libraries: -- regex -- Configuring done -- Generating done -- Build files have been written to: /«PKGBUILDDIR»/obj-x86_64-linux-gnu make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build -a -O--buildsystem=cmake -O--parallel make[1]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -H/«PKGBUILDDIR» -B/«PKGBUILDDIR»/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f External/cmim-1.0/CMakeFiles/fastentropy.dir/build.make External/cmim-1.0/CMakeFiles/fastentropy.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/External/cmim-1.0 /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0/CMakeFiles/fastentropy.dir/DependInfo.cmake --color= Scanning dependencies of target fastentropy make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f External/cmim-1.0/CMakeFiles/fastentropy.dir/build.make External/cmim-1.0/CMakeFiles/fastentropy.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Building CXX object External/cmim-1.0/CMakeFiles/fastentropy.dir/fastentropy.cc.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/fastentropy.dir/fastentropy.cc.o -c /«PKGBUILDDIR»/External/cmim-1.0/fastentropy.cc /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Building CXX object External/cmim-1.0/CMakeFiles/fastentropy.dir/misc.cc.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/fastentropy.dir/misc.cc.o -c /«PKGBUILDDIR»/External/cmim-1.0/misc.cc Linking CXX static library libfastentropy.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/cmake -P CMakeFiles/fastentropy.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastentropy.dir/link.txt --verbose=1 /usr/bin/ar cr libfastentropy.a CMakeFiles/fastentropy.dir/fastentropy.cc.o CMakeFiles/fastentropy.dir/misc.cc.o /usr/bin/ranlib libfastentropy.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Built target fastentropy make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/External/INCHI-API /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/INCHI-API /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target inchi_support make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /«PKGBUILDDIR»/External/INCHI-API/python/noinchi.py /«PKGBUILDDIR»/rdkit/Chem/inchi.py make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Built target inchi_support make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeneral make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Invariant.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 54 [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/types.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/utils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/RDLog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Dict.cpp Linking CXX shared library ../../lib/libRDGeneral.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libRDGeneral.so.1 -o ../../lib/libRDGeneral.so.1.2013.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libRDGeneral.so.1 ../../lib/libRDGeneral.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 54 [ 1%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeneral_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 55 [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Invariant.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/types.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/types.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/types.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/utils.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/utils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/RDLog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 56 [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Dict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Dict.cpp Linking CXX static library libRDGeneral_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -P CMakeFiles/RDGeneral_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral_static.dir/link.txt --verbose=1 /usr/bin/ar cr libRDGeneral_static.a CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o CMakeFiles/RDGeneral_static.dir/types.cpp.o CMakeFiles/RDGeneral_static.dir/utils.cpp.o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o /usr/bin/ranlib libRDGeneral_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 55 56 [ 3%] Built target RDGeneral_static make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= Scanning dependencies of target testDict make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDict.dir/testDict.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp Linking CXX executable testDict cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -rdynamic ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Built target testDict make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDBoost /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= Scanning dependencies of target RDBoost make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /«PKGBUILDDIR»/Code/RDBoost/Wrap.cpp Linking CXX shared library ../../lib/libRDBoost.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libRDBoost.so.1 -o ../../lib/libRDBoost.so.1.2013.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDBoost.so.1.2013.03.2 ../../lib/libRDBoost.so.1 ../../lib/libRDBoost.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Built target RDBoost make -f Code/RDBoost/CMakeFiles/RDBoost_static.dir/build.make Code/RDBoost/CMakeFiles/RDBoost_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDBoost /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost_static.dir/DependInfo.cmake --color= Scanning dependencies of target RDBoost_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost_static.dir/build.make Code/RDBoost/CMakeFiles/RDBoost_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost_static.dir/Wrap.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDBoost_static.dir/Wrap.cpp.o -c /«PKGBUILDDIR»/Code/RDBoost/Wrap.cpp Linking CXX static library libRDBoost_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/cmake -P CMakeFiles/RDBoost_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost_static.dir/link.txt --verbose=1 /usr/bin/ar cr libRDBoost_static.a CMakeFiles/RDBoost_static.dir/Wrap.cpp.o /usr/bin/ranlib libRDBoost_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Built target RDBoost_static make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDBoost/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= Scanning dependencies of target rdBase make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdBase_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /«PKGBUILDDIR»/Code/RDBoost/Wrap/RDBase.cpp Linking CXX shared module ../../../rdkit/rdBase.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdBase.so -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Built target rdBase make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DataStructs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target DataStructs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/BitVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 7 [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/SparseBitVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/ExplicitBitVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Utils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/base64.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 8 [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/BitOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/DiscreteDistMat.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/DiscreteValueVect.cpp Linking CXX shared library ../../lib/libDataStructs.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libDataStructs.so.1 -o ../../lib/libDataStructs.so.1.2013.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libDataStructs.so.1 ../../lib/libDataStructs.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 7 8 [ 5%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/DataStructs_static.dir/build.make Code/DataStructs/CMakeFiles/DataStructs_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DataStructs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs_static.dir/DependInfo.cmake --color= Scanning dependencies of target DataStructs_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs_static.dir/build.make Code/DataStructs/CMakeFiles/DataStructs_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/BitVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/BitVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/BitVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 9 [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/SparseBitVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/ExplicitBitVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/Utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/Utils.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Utils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/base64.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/base64.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/base64.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 10 [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/BitOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/BitOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/DiscreteDistMat.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/DiscreteValueVect.cpp Linking CXX static library libDataStructs_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -P CMakeFiles/DataStructs_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs_static.dir/link.txt --verbose=1 /usr/bin/ar cr libDataStructs_static.a CMakeFiles/DataStructs_static.dir/BitVect.cpp.o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs_static.dir/Utils.cpp.o CMakeFiles/DataStructs_static.dir/base64.cpp.o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o /usr/bin/ranlib libDataStructs_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 9 10 [ 7%] Built target DataStructs_static make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DataStructs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target testDataStructs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/testDatastructs.cpp Linking CXX executable testDataStructs cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs -rdynamic ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Built target testDataStructs make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DataStructs/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target cDataStructs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/DataStructs.cpp In file included from /«PKGBUILDDIR»/Code/DataStructs/Wrap/DataStructs.cpp:20: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/DiscreteValueVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/SparseIntVect.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 73 [ 8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/wrap_SparseBV.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/wrap_BitOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DcDataStructs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /«PKGBUILDDIR»/Code/DataStructs/Wrap/wrap_Utils.cpp Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,cDataStructs.so -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 73 [ 8%] Built target cDataStructs make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeometryLib make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/point.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Transform2D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Transform3D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 57 [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/UniformGrid3D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/GridUtils.cpp Linking CXX shared library ../../lib/libRDGeometryLib.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libRDGeometryLib.so.1 -o ../../lib/libRDGeometryLib.so.1.2013.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1 ../../lib/libRDGeometryLib.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 57 [ 9%] Built target RDGeometryLib make -f Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeometryLib_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/point.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib_static.dir/point.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/point.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Transform2D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 58 [ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Transform3D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/UniformGrid3D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/GridUtils.cpp Linking CXX static library libRDGeometryLib_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -P CMakeFiles/RDGeometryLib_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib_static.dir/link.txt --verbose=1 /usr/bin/ar cr libRDGeometryLib_static.a CMakeFiles/RDGeometryLib_static.dir/point.cpp.o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o /usr/bin/ranlib libRDGeometryLib_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 58 [ 10%] Built target RDGeometryLib_static make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testGrid make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 10%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/testGrid.cpp Linking CXX executable testGrid cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid -rdynamic ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 10%] Built target testGrid make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 100 [ 11%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/testTransforms.cpp Linking CXX executable testTransforms cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms -rdynamic ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 100 [ 11%] Built target testTransforms make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Geometry/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 11%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdGeometry_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Wrap/Point.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 11%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdGeometry_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Wrap/UniformGrid3D.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 81 [ 12%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdGeometry_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /«PKGBUILDDIR»/Code/Geometry/Wrap/rdGeometry.cpp Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdGeometry.so -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 81 [ 12%] Built target rdGeometry make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= Scanning dependencies of target testMatrices make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 96 [ 13%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/testMatrices.cpp Linking CXX executable testMatrices cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices -rdynamic ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 96 [ 13%] Built target testMatrices make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Alignment /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Alignment/AlignPoints.cpp Linking CXX shared library ../../../lib/libAlignment.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libAlignment.so.1 -o ../../../lib/libAlignment.so.1.2013.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libAlignment.so.1 ../../../lib/libAlignment.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 13%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Alignment /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Alignment/AlignPoints.cpp Linking CXX static library libAlignment_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -P CMakeFiles/Alignment_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment_static.dir/link.txt --verbose=1 /usr/bin/ar cr libAlignment_static.a CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o /usr/bin/ranlib libAlignment_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 13%] Built target Alignment_static make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Alignment /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 92 [ 14%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Alignment/testAlignment.cpp Linking CXX executable testAlignment cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment -rdynamic ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 92 [ 14%] Built target testAlignment make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Alignment/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 78 [ 15%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdAlignment_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Alignment/Wrap/rdAlignment.cpp In file included from /«PKGBUILDDIR»/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:14: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdAlignment.so -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libAlignment.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 78 [ 15%] Built target rdAlignment make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/EigenSolvers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= Scanning dependencies of target EigenSolvers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp Linking CXX shared library ../../../lib/libEigenSolvers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libEigenSolvers.so.1 -o ../../../lib/libEigenSolvers.so.1.2013.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1 ../../../lib/libEigenSolvers.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Built target EigenSolvers make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/EigenSolvers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/DependInfo.cmake --color= Scanning dependencies of target EigenSolvers_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp Linking CXX static library libEigenSolvers_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -P CMakeFiles/EigenSolvers_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers_static.dir/link.txt --verbose=1 /usr/bin/ar cr libEigenSolvers_static.a CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o /usr/bin/ranlib libEigenSolvers_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Built target EigenSolvers_static make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Optimizer /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Optimizer/BFGSOpt.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Optimizer/LinearSearch.cpp Linking CXX shared library ../../../lib/libOptimizer.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libOptimizer.so.1 -o ../../../lib/libOptimizer.so.1.2013.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libOptimizer.so.1 ../../../lib/libOptimizer.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Built target Optimizer make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Optimizer /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Optimizer/BFGSOpt.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 52 [ 16%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Optimizer/LinearSearch.cpp Linking CXX static library libOptimizer_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -P CMakeFiles/Optimizer_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer_static.dir/link.txt --verbose=1 /usr/bin/ar cr libOptimizer_static.a CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o /usr/bin/ranlib libOptimizer_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 52 [ 16%] Built target Optimizer_static make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Numerics/Optimizer /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 16%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /«PKGBUILDDIR»/Code/Numerics/Optimizer/testOptimizer.cpp Linking CXX executable testOptimizer cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer -rdynamic ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 16%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ForceField /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 16%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/ForceField.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 28 [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/AngleBend.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/BondStretch.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/Nonbonded.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/TorsionAngle.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 29 [ 18%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/DistanceConstraint.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 18%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/Params.cpp Linking CXX shared library ../../lib/libForceField.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libForceField.so.1 -o ../../lib/libForceField.so.1.2013.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o ../../lib/libOptimizer.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libForceField.so.1.2013.03.2 ../../lib/libForceField.so.1 ../../lib/libForceField.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 28 29 [ 18%] Built target ForceField make -f Code/ForceField/CMakeFiles/ForceField_static.dir/build.make Code/ForceField/CMakeFiles/ForceField_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ForceField /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/ForceField_static.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField_static.dir/build.make Code/ForceField/CMakeFiles/ForceField_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 18%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/ForceField.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/ForceField.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/ForceField.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 18%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/AngleBend.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 31 [ 19%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/BondStretch.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 19%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/Nonbonded.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 19%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/TorsionAngle.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 19%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/DistanceConstraint.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 32 [ 20%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/UFF/Params.cpp Linking CXX static library libForceField_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -P CMakeFiles/ForceField_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField_static.dir/link.txt --verbose=1 /usr/bin/ar cr libForceField_static.a CMakeFiles/ForceField_static.dir/ForceField.cpp.o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o /usr/bin/ranlib libForceField_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 31 32 [ 20%] Built target ForceField_static make -f Code/ForceField/CMakeFiles/testForceField.dir/build.make Code/ForceField/CMakeFiles/testForceField.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ForceField /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/testForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testForceField make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ForceField/CMakeFiles/testForceField.dir/build.make Code/ForceField/CMakeFiles/testForceField.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 20%] Building CXX object Code/ForceField/CMakeFiles/testForceField.dir/testForceField.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testForceField.dir/testForceField.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/testForceField.cpp Linking CXX executable testForceField cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/testForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testForceField.dir/testForceField.cpp.o -o testForceField -rdynamic ../../lib/libForceField.so.1.2013.03.2 ../../lib/libOptimizer.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 20%] Built target testForceField make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ForceField/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 80 [ 21%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdForceField_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /«PKGBUILDDIR»/Code/ForceField/Wrap/ForceField.cpp Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdForceField.so -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 80 [ 21%] Built target rdForceField make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DistGeom /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 21%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/DistGeomUtils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 21%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/TriangleSmooth.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 17 [ 22%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/DistViolationContrib.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 22%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/ChiralViolationContrib.cpp Linking CXX shared library ../../lib/libDistGeometry.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libDistGeometry.so.1 -o ../../lib/libDistGeometry.so.1.2013.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libEigenSolvers.so.1.2013.03.2 ../../lib/libForceField.so.1.2013.03.2 ../../lib/libOptimizer.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDistGeometry.so.1.2013.03.2 ../../lib/libDistGeometry.so.1 ../../lib/libDistGeometry.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 17 [ 22%] Built target DistGeometry make -f Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DistGeom /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 22%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/DistGeomUtils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 22%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/TriangleSmooth.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 18 [ 23%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/DistViolationContrib.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/ChiralViolationContrib.cpp Linking CXX static library libDistGeometry_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -P CMakeFiles/DistGeometry_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry_static.dir/link.txt --verbose=1 /usr/bin/ar cr libDistGeometry_static.a CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o /usr/bin/ranlib libDistGeometry_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 18 [ 23%] Built target DistGeometry_static make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DistGeom /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeom make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/testDistGeom.cpp Linking CXX executable testDistGeom cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom -rdynamic ../../lib/libDistGeometry.so.1.2013.03.2 ../../lib/libEigenSolvers.so.1.2013.03.2 ../../lib/libForceField.so.1.2013.03.2 ../../lib/libOptimizer.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Built target testDistGeom make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DistGeom/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeom make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /«PKGBUILDDIR»/Code/DistGeom/Wrap/DistGeom.cpp In file included from /«PKGBUILDDIR»/Code/DistGeom/Wrap/DistGeom.cpp:15: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,DistGeom.so -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libDistGeometry.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Built target DistGeom make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Catalogs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= Scanning dependencies of target Catalogs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /«PKGBUILDDIR»/Code/Catalogs/Catalog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /«PKGBUILDDIR»/Code/Catalogs/CatalogParams.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 1 [ 24%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /«PKGBUILDDIR»/Code/Catalogs/CatalogEntry.cpp Linking CXX shared library ../../lib/libCatalogs.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libCatalogs.so.1 -o ../../lib/libCatalogs.so.1.2013.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libCatalogs.so.1.2013.03.2 ../../lib/libCatalogs.so.1 ../../lib/libCatalogs.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 1 [ 24%] Built target Catalogs make -f Code/Catalogs/CMakeFiles/Catalogs_static.dir/build.make Code/Catalogs/CMakeFiles/Catalogs_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Catalogs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs_static.dir/DependInfo.cmake --color= Scanning dependencies of target Catalogs_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs_static.dir/build.make Code/Catalogs/CMakeFiles/Catalogs_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 24%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/Catalog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Catalogs_static.dir/Catalog.cpp.o -c /«PKGBUILDDIR»/Code/Catalogs/Catalog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 24%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o -c /«PKGBUILDDIR»/Code/Catalogs/CatalogParams.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 24%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o -c /«PKGBUILDDIR»/Code/Catalogs/CatalogEntry.cpp Linking CXX static library libCatalogs_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -P CMakeFiles/Catalogs_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs_static.dir/link.txt --verbose=1 /usr/bin/ar cr libCatalogs_static.a CMakeFiles/Catalogs_static.dir/Catalog.cpp.o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o /usr/bin/ranlib libCatalogs_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 24%] Built target Catalogs_static make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Atom.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 35 [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/QueryAtom.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/QueryBond.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Bond.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 36 [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FindRings.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ROMol.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/RWMol.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PeriodicTable.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 37 [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/atomic_data.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/QueryOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolPickler.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Canon.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 38 [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/AtomIterators.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/BondIterators.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Aromaticity.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Kekulize.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 39 [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolDiscriminators.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ConjugHybrid.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/AddHs.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RankAtoms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/RankAtoms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/RankAtoms.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 40 [ 30%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Matrices.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 30%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Chirality.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 30%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/RingInfo.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 30%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Conformer.cpp Linking CXX shared library ../../lib/libGraphMol.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libGraphMol.so.1 -o ../../lib/libGraphMol.so.1.2013.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/RankAtoms.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libGraphMol.so.1 ../../lib/libGraphMol.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 35 36 37 38 39 40 [ 30%] Built target GraphMol make -f Code/GraphMol/CMakeFiles/GraphMol_static.dir/build.make Code/GraphMol/CMakeFiles/GraphMol_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol_static.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol_static.dir/build.make Code/GraphMol/CMakeFiles/GraphMol_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 41 [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Atom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Atom.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Atom.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/QueryAtom.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/QueryBond.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Bond.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Bond.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Bond.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 42 [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/FindRings.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FindRings.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ROMol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ROMol.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RWMol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/RWMol.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 43 [ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PeriodicTable.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/atomic_data.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/QueryOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolPickler.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 44 [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Canon.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Canon.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Canon.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/AtomIterators.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/BondIterators.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Aromaticity.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 45 [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Kekulize.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolDiscriminators.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ConjugHybrid.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AddHs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/AddHs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/AddHs.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 46 [ 36%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RankAtoms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/RankAtoms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/RankAtoms.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 36%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Matrices.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Matrices.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Matrices.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 36%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Chirality.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Chirality.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Chirality.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 36%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/RingInfo.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 47 [ 37%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Conformer.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/GraphMol_static.dir/Conformer.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Conformer.cpp Linking CXX static library libGraphMol_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -P CMakeFiles/GraphMol_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol_static.dir/link.txt --verbose=1 /usr/bin/ar cr libGraphMol_static.a CMakeFiles/GraphMol_static.dir/Atom.cpp.o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o CMakeFiles/GraphMol_static.dir/Bond.cpp.o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o CMakeFiles/GraphMol_static.dir/Canon.cpp.o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol_static.dir/AddHs.cpp.o CMakeFiles/GraphMol_static.dir/RankAtoms.cpp.o CMakeFiles/GraphMol_static.dir/Matrices.cpp.o CMakeFiles/GraphMol_static.dir/Chirality.cpp.o CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o CMakeFiles/GraphMol_static.dir/Conformer.cpp.o /usr/bin/ranlib libGraphMol_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 41 42 43 44 45 46 47 [ 37%] Built target GraphMol_static make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= Scanning dependencies of target SmilesParse make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesParse.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesParseOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesWrite.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 66 [ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmartsWrite.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smiles.tab.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smarts.tab.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/lex.yysmarts.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 67 [ 39%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSmilesParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/lex.yysmiles.cpp Linking CXX shared library ../../../lib/libSmilesParse.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSmilesParse.so.1 -o ../../../lib/libSmilesParse.so.1.2013.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1 ../../../lib/libSmilesParse.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 65 66 67 [ 40%] Built target SmilesParse make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolIterTest make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/itertest.cpp Linking CXX executable graphmolIterTest cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest -rdynamic ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 40%] Built target graphmolIterTest make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Substruct /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructMatch make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 40%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSubstructMatch_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Substruct/SubstructMatch.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 40%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSubstructMatch_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Substruct/SubstructUtils.cpp Linking CXX shared library ../../../lib/libSubstructMatch.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSubstructMatch.so.1 -o ../../../lib/libSubstructMatch.so.1.2013.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1 ../../../lib/libSubstructMatch.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 40%] Built target SubstructMatch make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= Scanning dependencies of target FileParsers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 19 [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/Mol2FileParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileStereochem.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 20 [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SDMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SmilesWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 21 [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SDWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TDTMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TDTWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TplFileParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 22 [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TplFileWriter.cpp Linking CXX shared library ../../../lib/libFileParsers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libFileParsers.so.1 -o ../../../lib/libFileParsers.so.1.2013.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libFileParsers.so.1 ../../../lib/libFileParsers.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 19 20 21 22 [ 44%] Built target FileParsers make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMolOpsTest make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/molopstest.cpp Linking CXX executable graphmolMolOpsTest cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest -rdynamic ../../lib/libSubstructMatch.so.1.2013.03.2 ../../lib/libFileParsers.so.1.2013.03.2 ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Built target graphmolMolOpsTest make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTest1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/test1.cpp Linking CXX executable graphmolTest1 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 -rdynamic ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Built target graphmolTest1 make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolcpTest make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/cptest.cpp Linking CXX executable graphmolcpTest cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest -rdynamic ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Built target graphmolcpTest make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 76 [ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/querytest.cpp Linking CXX executable graphmolqueryTest cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest -rdynamic ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 76 [ 45%] Built target graphmolqueryTest make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestCanon make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/testCanon.cpp Linking CXX executable graphmoltestCanon cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon -rdynamic ../../lib/libSubstructMatch.so.1.2013.03.2 ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Built target graphmoltestCanon make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestChirality make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/testChirality.cpp Linking CXX executable graphmoltestChirality cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality -rdynamic ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libFileParsers.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Built target graphmoltestChirality make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPickler make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/testPickler.cpp Linking CXX executable graphmoltestPickler cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler -rdynamic ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libSubstructMatch.so.1.2013.03.2 ../../lib/libFileParsers.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 ../../lib/libSmilesParse.so.1.2013.03.2 ../../lib/libGraphMol.so.1.2013.03.2 ../../lib/libRDGeometryLib.so.1.2013.03.2 ../../lib/libDataStructs.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Built target graphmoltestPickler make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Depictor /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 45%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/RDDepictor.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 11 [ 46%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/EmbeddedFrag.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 46%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/DepictUtils.cpp Linking CXX shared library ../../../lib/libDepictor.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libDepictor.so.1 -o ../../../lib/libDepictor.so.1.2013.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDepictor.so.1.2013.03.2 ../../../lib/libDepictor.so.1 ../../../lib/libDepictor.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 11 [ 46%] Built target Depictor make -f Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Depictor /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 46%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/RDDepictor.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 46%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/EmbeddedFrag.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 12 [ 47%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/DepictUtils.cpp Linking CXX static library libDepictor_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -P CMakeFiles/Depictor_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor_static.dir/link.txt --verbose=1 /usr/bin/ar cr libDepictor_static.a CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o /usr/bin/ranlib libDepictor_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 12 [ 47%] Built target Depictor_static make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target ChemTransforms make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 5 [ 48%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/ChemTransforms.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 48%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/MolFragmenter.cpp Linking CXX shared library ../../../lib/libChemTransforms.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libChemTransforms.so.1 -o ../../../lib/libChemTransforms.so.1.2013.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libChemTransforms.so.1 ../../../lib/libChemTransforms.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 5 [ 48%] Built target ChemTransforms make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Depictor /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target testDepictor make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 93 [ 49%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/testDepictor.cpp Linking CXX executable testDepictor cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor -rdynamic ../../../lib/libDepictor.so.1.2013.03.2 ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 93 [ 49%] Built target testDepictor make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Depictor/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target rdDepictor make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 49%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdDepictor_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:14: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdDepictor.so -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libDepictor.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libFileParsers.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread -lboost_thread-mt -lboost_system-mt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 49%] Built target rdDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/DependInfo.cmake --color= Scanning dependencies of target SmilesParse_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 49%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesParse.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 49%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesParseOps.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 49%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmilesWrite.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 69 [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/SmartsWrite.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smiles.tab.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smarts.tab.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/lex.yysmarts.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 70 [ 51%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/lex.yysmiles.cpp Linking CXX static library libSmilesParse_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -P CMakeFiles/SmilesParse_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse_static.dir/link.txt --verbose=1 /usr/bin/ar cr libSmilesParse_static.a CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o /usr/bin/ranlib libSmilesParse_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 68 69 70 [ 52%] Built target SmilesParse_static make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smaTest1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/smatest.cpp Linking CXX executable smaTest1 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 -rdynamic ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Built target smaTest1 make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/smiTest1.dir/test.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SmilesParse/test.cpp Linking CXX executable smiTest1 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 -rdynamic ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Built target smiTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/DependInfo.cmake --color= Scanning dependencies of target FileParsers_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/Mol2FileParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileStereochem.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 23 [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/MolFileWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SDMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 24 [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SmilesWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/SDWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TDTMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TDTWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 25 [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TplFileParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/TplFileWriter.cpp Linking CXX static library libFileParsers_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -P CMakeFiles/FileParsers_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers_static.dir/link.txt --verbose=1 /usr/bin/ar cr libFileParsers_static.a CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o /usr/bin/ranlib libFileParsers_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 23 24 25 [ 55%] Built target FileParsers_static make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersTest1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 75 [ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/test1.cpp Linking CXX executable fileParsersTest1 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 -rdynamic ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libDepictor.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 75 [ 56%] Built target fileParsersTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= Scanning dependencies of target testMol2ToMol make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/testMol2ToMol.cpp Linking CXX executable testMol2ToMol cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol -rdynamic ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 56%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= Scanning dependencies of target testMolSupplier make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 97 [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/testMolSupplier.cpp Linking CXX executable testMolSupplier cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier -rdynamic ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libDepictor.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 97 [ 57%] Built target testMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= Scanning dependencies of target testMolWriter make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/testMolWriter.cpp Linking CXX executable testMolWriter cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter -rdynamic ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= Scanning dependencies of target testTplParser make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FileParsers/testTpls.cpp Linking CXX executable testTplParser cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser -rdynamic ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Built target testTplParser make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Substruct /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructMatch_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Substruct/SubstructMatch.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 72 [ 58%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Substruct/SubstructUtils.cpp Linking CXX static library libSubstructMatch_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -P CMakeFiles/SubstructMatch_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch_static.dir/link.txt --verbose=1 /usr/bin/ar cr libSubstructMatch_static.a CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o /usr/bin/ranlib libSubstructMatch_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 72 [ 58%] Built target SubstructMatch_static make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Substruct /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target testSubstructMatch make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 58%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Substruct/test1.cpp Linking CXX executable testSubstructMatch cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch -rdynamic ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 58%] Built target testSubstructMatch make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemReactions /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target ChemReactions make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 2 [ 59%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/Reaction.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 59%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/MDLParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 59%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/DaylightParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 59%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/ReactionPickler.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 3 [ 60%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/ReactionWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 60%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/ReactionDepict.cpp Linking CXX shared library ../../../lib/libChemReactions.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libChemReactions.so.1 -o ../../../lib/libChemReactions.so.1.2013.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o ../../../lib/libDepictor.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemReactions.so.1.2013.03.2 ../../../lib/libChemReactions.so.1 ../../../lib/libChemReactions.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 2 3 [ 60%] Built target ChemReactions make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemReactions /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DependInfo.cmake --color= Scanning dependencies of target ChemReactions_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 60%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/Reaction.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 60%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/MDLParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 4 [ 61%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/DaylightParser.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/ReactionPickler.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/ReactionWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/ReactionDepict.cpp Linking CXX static library libChemReactions_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -P CMakeFiles/ChemReactions_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions_static.dir/link.txt --verbose=1 /usr/bin/ar cr libChemReactions_static.a CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o /usr/bin/ranlib libChemReactions_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 4 [ 61%] Built target ChemReactions_static make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemReactions /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= Scanning dependencies of target testReaction make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make 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-D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction -rdynamic ../../../lib/libChemReactions.so.1.2013.03.2 ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libDepictor.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Built target testReaction make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemReactions make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdChemReactions_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdChemReactions.so -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libChemReactions.so.1.2013.03.2 ../../../../lib/libChemTransforms.so.1.2013.03.2 ../../../../lib/libDepictor.so.1.2013.03.2 ../../../../lib/libFileParsers.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Built target rdChemReactions make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/DependInfo.cmake --color= Scanning dependencies of target ChemTransforms_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/ChemTransforms.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/MolFragmenter.cpp Linking CXX static library libChemTransforms_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -P CMakeFiles/ChemTransforms_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms_static.dir/link.txt --verbose=1 /usr/bin/ar cr libChemTransforms_static.a CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o /usr/bin/ranlib libChemTransforms_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Built target ChemTransforms_static make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testChemTransforms make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ChemTransforms/testChemTransforms.cpp Linking CXX executable testChemTransforms cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms -rdynamic ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Built target testChemTransforms make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= Scanning dependencies of target Subgraphs make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSubgraphs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/boost-numeric-bindings -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/Subgraphs.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSubgraphs_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/boost-numeric-bindings -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/SubgraphUtils.cpp Linking CXX shared library ../../../lib/libSubgraphs.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSubgraphs.so.1 -o ../../../lib/libSubgraphs.so.1.2013.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1 ../../../lib/libSubgraphs.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Built target Subgraphs make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/DependInfo.cmake --color= Scanning dependencies of target Subgraphs_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/boost-numeric-bindings -o CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/Subgraphs.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 71 [ 62%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/boost-numeric-bindings -o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/SubgraphUtils.cpp Linking CXX static library libSubgraphs_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -P CMakeFiles/Subgraphs_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs_static.dir/link.txt --verbose=1 /usr/bin/ar cr libSubgraphs_static.a CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o /usr/bin/ranlib libSubgraphs_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 71 [ 62%] Built target Subgraphs_static make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 99 [ 63%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/boost-numeric-bindings -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/test1.cpp Linking CXX executable testSubgraphs1 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 -rdynamic ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 99 [ 63%] Built target testSubgraphs1 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 63%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/boost-numeric-bindings -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Subgraphs/test2.cpp Linking CXX executable testSubgraphs2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 -rdynamic ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 63%] Built target testSubgraphs2 make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FragCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 63%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 63%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatGenerator.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 63%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 33 [ 64%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatParams.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 64%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragFPGenerator.cpp Linking CXX shared library ../../../lib/libFragCatalog.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libFragCatalog.so.1 -o ../../../lib/libFragCatalog.so.1.2013.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libCatalogs.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFragCatalog.so.1.2013.03.2 ../../../lib/libFragCatalog.so.1 ../../../lib/libFragCatalog.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 33 [ 64%] Built target FragCatalog make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FragCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 64%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 64%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatGenerator.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 34 [ 65%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragCatParams.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/FragFPGenerator.cpp Linking CXX static library libFragCatalog_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -P CMakeFiles/FragCatalog_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog_static.dir/link.txt --verbose=1 /usr/bin/ar cr libFragCatalog_static.a CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o /usr/bin/ranlib libFragCatalog_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 34 [ 65%] Built target FragCatalog_static make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FragCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testFragCatalog make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/test1.cpp Linking CXX executable testFragCatalog cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog -rdynamic ../../../lib/libFragCatalog.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libCatalogs.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Built target testFragCatalog make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfragcatalog make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdfragcatalog_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 88 [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdfragcatalog_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdfragcatalog_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdfragcatalog_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdfragcatalog_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdfragcatalog.so -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libFragCatalog.so.1.2013.03.2 ../../../../lib/libSubgraphs.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libCatalogs.so.1.2013.03.2 ../../../../lib/libFileParsers.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread -lboost_thread-mt -lboost_system-mt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 88 [ 66%] Built target rdfragcatalog make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/PartialCharges /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PartialCharges/GasteigerCharges.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PartialCharges/GasteigerParams.cpp Linking CXX shared library ../../../lib/libPartialCharges.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libPartialCharges.so.1 -o ../../../lib/libPartialCharges.so.1.2013.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libPartialCharges.so.1.2013.03.2 ../../../lib/libPartialCharges.so.1 ../../../lib/libPartialCharges.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Built target PartialCharges make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Descriptors /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Crippen.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/MolDescriptors.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/MolSurf.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 13 [ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Lipinski.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/MQN.cpp Linking CXX shared library ../../../lib/libDescriptors.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libDescriptors.so.1 -o ../../../lib/libDescriptors.so.1.2013.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o ../../../lib/libPartialCharges.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDescriptors.so.1.2013.03.2 ../../../lib/libDescriptors.so.1 ../../../lib/libDescriptors.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 13 [ 67%] Built target Descriptors make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Descriptors /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Crippen.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors_static.dir/Crippen.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Crippen.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 14 [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/MolDescriptors.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/MolSurf.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Lipinski.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 15 [ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MQN.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Descriptors_static.dir/MQN.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/MQN.cpp Linking CXX static library libDescriptors_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -P CMakeFiles/Descriptors_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors_static.dir/link.txt --verbose=1 /usr/bin/ar cr libDescriptors_static.a CMakeFiles/Descriptors_static.dir/Crippen.cpp.o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MQN.cpp.o /usr/bin/ranlib libDescriptors_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 14 15 [ 69%] Built target Descriptors_static make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Descriptors /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target testDescriptors make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/test.cpp Linking CXX executable testDescriptors cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors -rdynamic ../../../lib/libPartialCharges.so.1.2013.03.2 ../../../lib/libDescriptors.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libPartialCharges.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Built target testDescriptors make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Fingerprints /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/Fingerprints.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/PatternFingerprints.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/MorganFingerprints.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 26 [ 70%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/AtomPairs.cpp /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/AtomPairs.cpp:448:78: warning: operator '<<' has lower precedence than '+'; '+' will be evaluated first [-Wshift-op-parentheses] atomCodes.push_back(((*atomInvariants)[(*atomItI)->getIdx()])<<1 + 1); ~~~~^~~ /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/AtomPairs.cpp:448:78: note: place parentheses around the '+' expression to silence this warning atomCodes.push_back(((*atomInvariants)[(*atomItI)->getIdx()])<<1 + 1); ^ ( ) 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 70%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/MACCS.cpp Linking CXX shared library ../../../lib/libFingerprints.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libFingerprints.so.1 -o ../../../lib/libFingerprints.so.1.2013.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFingerprints.so.1.2013.03.2 ../../../lib/libFingerprints.so.1 ../../../lib/libFingerprints.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 26 [ 70%] Built target Fingerprints make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDescriptors make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 70%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolDescriptors_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:14: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdMolDescriptors.so -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libDescriptors.so.1.2013.03.2 ../../../../lib/libPartialCharges.so.1.2013.03.2 ../../../../lib/libFingerprints.so.1.2013.03.2 ../../../../lib/libFileParsers.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubgraphs.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 70%] Built target rdMolDescriptors make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Fingerprints /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 70%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/Fingerprints.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 70%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/PatternFingerprints.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 27 [ 71%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/MorganFingerprints.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/AtomPairs.cpp /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/AtomPairs.cpp:448:78: warning: operator '<<' has lower precedence than '+'; '+' will be evaluated first [-Wshift-op-parentheses] atomCodes.push_back(((*atomInvariants)[(*atomItI)->getIdx()])<<1 + 1); ~~~~^~~ /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/AtomPairs.cpp:448:78: note: place parentheses around the '+' expression to silence this warning atomCodes.push_back(((*atomInvariants)[(*atomItI)->getIdx()])<<1 + 1); ^ ( ) 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/MACCS.cpp Linking CXX static library libFingerprints_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -P CMakeFiles/Fingerprints_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints_static.dir/link.txt --verbose=1 /usr/bin/ar cr libFingerprints_static.a CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o /usr/bin/ranlib libFingerprints_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 27 [ 71%] Built target Fingerprints_static make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Fingerprints /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprints make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Fingerprints/test1.cpp Linking CXX executable testFingerprints cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints -rdynamic ../../../lib/libFingerprints.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Built target testFingerprints make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/PartialCharges /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PartialCharges/GasteigerCharges.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 53 [ 72%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PartialCharges/GasteigerParams.cpp Linking CXX static library libPartialCharges_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -P CMakeFiles/PartialCharges_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges_static.dir/link.txt --verbose=1 /usr/bin/ar cr libPartialCharges_static.a CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o /usr/bin/ranlib libPartialCharges_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 53 [ 72%] Built target PartialCharges_static make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/PartialCharges/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target rdPartialCharges make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 72%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdPartialCharges_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdPartialCharges.so -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libPartialCharges.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 72%] Built target rdPartialCharges make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target MolTransforms make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 72%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolTransforms/MolTransforms.cpp Linking CXX shared library ../../../lib/libMolTransforms.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libMolTransforms.so.1 -o ../../../lib/libMolTransforms.so.1.2013.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libMolTransforms.so.1 ../../../lib/libMolTransforms.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 72%] Built target MolTransforms make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/DependInfo.cmake --color= Scanning dependencies of target MolTransforms_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 51 [ 73%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolTransforms/MolTransforms.cpp Linking CXX static library libMolTransforms_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -P CMakeFiles/MolTransforms_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms_static.dir/link.txt --verbose=1 /usr/bin/ar cr libMolTransforms_static.a CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o /usr/bin/ranlib libMolTransforms_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 51 [ 73%] Built target MolTransforms_static make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testMolTransforms make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 73%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolTransforms/test1.cpp Linking CXX executable testMolTransforms cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms -rdynamic ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 73%] Built target testMolTransforms make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolTransforms/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolTransforms make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 84 [ 74%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolTransforms_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp:13: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdMolTransforms.so -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libMolTransforms.so.1.2013.03.2 ../../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 84 [ 74%] Built target rdMolTransforms make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolAlign /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolAlign/AlignMolecules.cpp Linking CXX shared library ../../../lib/libMolAlign.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libMolAlign.so.1 -o ../../../lib/libMolAlign.so.1.2013.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolAlign.so.1.2013.03.2 ../../../lib/libMolAlign.so.1 ../../../lib/libMolAlign.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Built target MolAlign make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/UFF /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/AtomTyper.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceFieldHelpers.dir/AtomTyper.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers.dir/Builder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceFieldHelpers.dir/Builder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp Linking CXX shared library ../../../../lib/libForceFieldHelpers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libForceFieldHelpers.so.1 -o ../../../../lib/libForceFieldHelpers.so.1.2013.03.2 CMakeFiles/ForceFieldHelpers.dir/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/Builder.cpp.o ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libForceField.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libOptimizer.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../../lib/libForceFieldHelpers.so.1 ../../../../lib/libForceFieldHelpers.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Built target ForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeomHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/Embedder.cpp Linking CXX shared library ../../../lib/libDistGeomHelpers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libDistGeomHelpers.so.1 -o ../../../lib/libDistGeomHelpers.so.1.2013.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../lib/libDistGeometry.so.1.2013.03.2 ../../../lib/libAlignment.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDistGeomHelpers.so.1.2013.03.2 ../../../lib/libDistGeomHelpers.so.1 ../../../lib/libDistGeomHelpers.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Built target DistGeomHelpers make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/testForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/testForceFieldHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/testForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testForceFieldHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/testForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/testForceFieldHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 95 [ 75%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/testForceFieldHelpers.dir/testHelpers.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testForceFieldHelpers.dir/testHelpers.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/testHelpers.cpp Linking CXX executable testForceFieldHelpers cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testForceFieldHelpers.dir/testHelpers.cpp.o -o testForceFieldHelpers -rdynamic ../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../lib/libDistGeomHelpers.so.1.2013.03.2 ../../../lib/libDistGeometry.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libMolAlign.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 95 [ 75%] Built target testForceFieldHelpers make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/UFF /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 30 [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/AtomTyper.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceFieldHelpers_static.dir/AtomTyper.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/ForceFieldHelpers_static.dir/Builder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ForceFieldHelpers_static.dir/Builder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp Linking CXX static library libForceFieldHelpers_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -P CMakeFiles/ForceFieldHelpers_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers_static.dir/link.txt --verbose=1 /usr/bin/ar cr libForceFieldHelpers_static.a CMakeFiles/ForceFieldHelpers_static.dir/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/Builder.cpp.o /usr/bin/ranlib libForceFieldHelpers_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 30 [ 76%] Built target ForceFieldHelpers_static make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceFieldHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdForceFieldHelpers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdForceFieldHelpers.so -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libForceField.so.1.2013.03.2 ../../../../lib/libOptimizer.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread -lpthread ../../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 76%] Built target rdForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeomHelpers_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 16 [ 77%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 77%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/Embedder.cpp Linking CXX static library libDistGeomHelpers_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -P CMakeFiles/DistGeomHelpers_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers_static.dir/link.txt --verbose=1 /usr/bin/ar cr libDistGeomHelpers_static.a CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o /usr/bin/ranlib libDistGeomHelpers_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 16 [ 77%] Built target DistGeomHelpers_static make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeomHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 94 [ 78%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp Linking CXX executable testDistGeomHelpers cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers -rdynamic ../../../lib/libDistGeomHelpers.so.1.2013.03.2 ../../../lib/libDistGeometry.so.1.2013.03.2 ../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libMolAlign.so.1.2013.03.2 ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 94 [ 78%] Built target testDistGeomHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target rdDistGeom make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdDistGeom_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:13: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdDistGeom.so -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libDistGeomHelpers.so.1.2013.03.2 ../../../../lib/libDistGeometry.so.1.2013.03.2 ../../../../lib/libFileParsers.so.1.2013.03.2 ../../../../lib/libMolTransforms.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../../lib/libForceField.so.1.2013.03.2 ../../../../lib/libMolAlign.so.1.2013.03.2 ../../../../lib/libOptimizer.so.1.2013.03.2 ../../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../../lib/libAlignment.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libMolTransforms.so.1.2013.03.2 ../../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 -lpthread ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Built target rdDistGeom make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolAlign /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolAlign/AlignMolecules.cpp Linking CXX static library libMolAlign_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -P CMakeFiles/MolAlign_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign_static.dir/link.txt --verbose=1 /usr/bin/ar cr libMolAlign_static.a CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o /usr/bin/ranlib libMolAlign_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Built target MolAlign_static make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolAlign /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target testMolAlign make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolAlign/testMolAlign.cpp Linking CXX executable testMolAlign cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign -rdynamic ../../../lib/libMolAlign.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libDistGeomHelpers.so.1.2013.03.2 ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libForceFieldHelpers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libDistGeometry.so.1.2013.03.2 ../../../lib/libForceField.so.1.2013.03.2 ../../../lib/libOptimizer.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Built target testMolAlign make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolAlign/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolAlign make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolAlign_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:14: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning 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Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdMolAlign.so -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libMolAlign.so.1.2013.03.2 ../../../../lib/libMolTransforms.so.1.2013.03.2 ../../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../../lib/libAlignment.so.1.2013.03.2 ../../../../lib/libOptimizer.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread -lpthread ../../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Built target rdMolAlign make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 49 [ 79%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp /usr/bin/cmake -E cmake_progress_report 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-DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 79%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp Linking CXX shared library ../../../lib/libMolChemicalFeatures.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libMolChemicalFeatures.so.1 -o ../../../lib/libMolChemicalFeatures.so.1.2013.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolChemicalFeatures.so.1.2013.03.2 ../../../lib/libMolChemicalFeatures.so.1 ../../../lib/libMolChemicalFeatures.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 49 [ 79%] Built target MolChemicalFeatures make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 50 [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp Linking CXX static library libMolChemicalFeatures_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -P CMakeFiles/MolChemicalFeatures_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures_static.dir/link.txt --verbose=1 /usr/bin/ar cr libMolChemicalFeatures_static.a CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o /usr/bin/ranlib libMolChemicalFeatures_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 50 [ 80%] Built target MolChemicalFeatures_static make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testFeatures make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp Linking CXX executable testFeatures cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures -rdynamic ../../../lib/libMolChemicalFeatures.so.1.2013.03.2 ../../../lib/libCatalogs.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Built target testFeatures make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolChemicalFeatures make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolChemicalFeatures_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 83 [ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolChemicalFeatures_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolChemicalFeatures_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolChemicalFeatures_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdMolChemicalFeatures.so -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libMolChemicalFeatures.so.1.2013.03.2 ../../../../lib/libCatalogs.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 -lpthread ../../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 83 [ 81%] Built target rdMolChemicalFeatures make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 81%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DShapeHelpers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 62 [ 82%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DShapeHelpers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp Linking CXX shared library ../../../lib/libShapeHelpers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libShapeHelpers.so.1 -o ../../../lib/libShapeHelpers.so.1.2013.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libShapeHelpers.so.1.2013.03.2 ../../../lib/libShapeHelpers.so.1 ../../../lib/libShapeHelpers.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 62 [ 82%] Built target ShapeHelpers make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp Linking CXX static library libShapeHelpers_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -P CMakeFiles/ShapeHelpers_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers_static.dir/link.txt --verbose=1 /usr/bin/ar cr libShapeHelpers_static.a CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o /usr/bin/ranlib libShapeHelpers_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Built target ShapeHelpers_static make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testShapeHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp Linking CXX executable testShapeHelpers cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers -rdynamic ../../../lib/libShapeHelpers.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libMolAlign.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libMolTransforms.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../lib/libAlignment.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Built target testShapeHelpers make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdShapeHelpers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdShapeHelpers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdShapeHelpers.so -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libShapeHelpers.so.1.2013.03.2 ../../../../lib/libMolTransforms.so.1.2013.03.2 ../../../../lib/libEigenSolvers.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Built target rdShapeHelpers make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target MolCatalog make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 48 [ 83%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/MolCatalogParams.cpp Linking CXX shared library ../../../lib/libMolCatalog.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libMolCatalog.so.1 -o ../../../lib/libMolCatalog.so.1.2013.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libCatalogs.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolCatalog.so.1.2013.03.2 ../../../lib/libMolCatalog.so.1 ../../../lib/libMolCatalog.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 48 [ 83%] Built target MolCatalog make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/DependInfo.cmake --color= Scanning dependencies of target MolCatalog_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/MolCatalogParams.cpp Linking CXX static library libMolCatalog_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -P CMakeFiles/MolCatalog_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog_static.dir/link.txt --verbose=1 /usr/bin/ar cr libMolCatalog_static.a CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o /usr/bin/ranlib libMolCatalog_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Built target MolCatalog_static make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testMolCatalog make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/test1.cpp Linking CXX executable testMolCatalog cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog -rdynamic ../../../lib/libMolCatalog.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libCatalogs.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Built target testMolCatalog make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolCatalog make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMolCatalog_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdMolCatalog.so -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libMolCatalog.so.1.2013.03.2 ../../../../lib/libFileParsers.so.1.2013.03.2 ../../../../lib/libCatalogs.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Built target rdMolCatalog make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SLNParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSLNParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/SLNParse.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSLNParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/SLNAttribs.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSLNParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/sln.tab.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 60 [ 84%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSLNParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/lex.yysln.cpp Linking CXX shared library ../../../lib/libSLNParse.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSLNParse.so.1 -o ../../../lib/libSLNParse.so.1.2013.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libGraphMol.so.1.2013.03.2 -lboost_regex-mt ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSLNParse.so.1.2013.03.2 ../../../lib/libSLNParse.so.1 ../../../lib/libSLNParse.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 59 60 [ 85%] Built target SLNParse make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SLNParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 85%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/SLNParse.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse_static.dir/SLNParse.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/SLNParse.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 61 [ 86%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/SLNAttribs.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse_static.dir/SLNAttribs.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/SLNAttribs.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/sln.tab.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse_static.dir/sln.tab.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/sln.tab.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse_static.dir/lex.yysln.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SLNParse_static.dir/lex.yysln.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/lex.yysln.cpp Linking CXX static library libSLNParse_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -P CMakeFiles/SLNParse_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse_static.dir/link.txt --verbose=1 /usr/bin/ar cr libSLNParse_static.a CMakeFiles/SLNParse_static.dir/SLNParse.cpp.o CMakeFiles/SLNParse_static.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse_static.dir/sln.tab.cpp.o CMakeFiles/SLNParse_static.dir/lex.yysln.cpp.o /usr/bin/ranlib libSLNParse_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 61 [ 86%] Built target SLNParse_static make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SLNParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target testSLNParse make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/test.cpp Linking CXX executable testSLNParse cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse -rdynamic ../../../lib/libSLNParse.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_regex-mt ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Built target testSLNParse make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/SLNParse/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target rdSLNParse make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdSLNParse_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdSLNParse.so -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libSLNParse.so.1.2013.03.2 ../../../../lib/libSmilesParse.so.1.2013.03.2 ../../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../../lib/libGraphMol.so.1.2013.03.2 ../../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_regex-mt ../../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Built target rdSLNParse make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= Scanning dependencies of target rdchem make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/rdchem.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/Wrap/rdchem.cpp:15: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 86 [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/Table.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/Table.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/Atom.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/Bond.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/Mol.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 87 [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/Conformer.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/RingInfo.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdchem_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/EditableMol.cpp Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdchem.so -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread -lboost_thread-mt -lboost_system-mt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 86 87 [ 88%] Built target rdchem make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolfiles make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 89 [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/rdmolfiles.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/SDMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/TDTMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 90 [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/SmilesMolSupplier.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/SmilesWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/SDWriter.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolfiles_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/TDTWriter.cpp Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdmolfiles.so -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 -lpthread -lboost_thread-mt -lboost_system-mt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 89 90 [ 90%] Built target rdmolfiles make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/GraphMol/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolops make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 91 [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolops_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/rdmolops.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/Wrap/rdmolops.cpp:15: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Drdmolops_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /«PKGBUILDDIR»/Code/GraphMol/Wrap/MolOps.cpp In file included from /«PKGBUILDDIR»/Code/GraphMol/Wrap/MolOps.cpp:14: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdmolops.so -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libFileParsers.so.1.2013.03.2 ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libFingerprints.so.1.2013.03.2 ../../../lib/libChemTransforms.so.1.2013.03.2 ../../../lib/libCatalogs.so.1.2013.03.2 ../../../lib/libSubgraphs.so.1.2013.03.2 ../../../lib/libSmilesParse.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../lib/libSubstructMatch.so.1.2013.03.2 ../../../lib/libGraphMol.so.1.2013.03.2 ../../../lib/libRDGeometryLib.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 -lpthread ../../../lib/libRDGeneral.so.1.2013.03.2 -lboost_thread-mt -lboost_system-mt make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 91 [ 91%] Built target rdmolops make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/Query /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Query /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= Scanning dependencies of target testQuery make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 98 [ 92%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Query && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testQuery.dir/test.cpp.o -c /«PKGBUILDDIR»/Code/Query/test.cpp Linking CXX executable testQuery cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testQuery.dir/test.cpp.o -o testQuery -rdynamic ../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 98 [ 92%] Built target testQuery make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DataManip/MetricMatrixCalc /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= Scanning dependencies of target testMatCalc make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 92%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /«PKGBUILDDIR»/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp Linking CXX executable testMatCalc cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc -rdynamic ../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 92%] Built target testMatCalc make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/DataManip/MetricMatrixCalc/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= Scanning dependencies of target rdMetricMatrixCalc make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 82 [ 93%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdMetricMatrixCalc_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /«PKGBUILDDIR»/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp In file included from /«PKGBUILDDIR»/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:14: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdMetricMatrixCalc.so -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread ../../../../lib/libRDGeneral.so.1.2013.03.2 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 82 [ 93%] Built target rdMetricMatrixCalc make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= Scanning dependencies of target hc make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 77 [ 94%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Dhc_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/hc.dir/hc.c.o -c /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh/hc.c /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 94%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -Dhc_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/hc.dir/hcdriver.c.o -c /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh/hcdriver.c Linking C shared library ../../../../lib/libhc.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libhc.so.1 -o ../../../../lib/libhc.so.1.2013.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libhc.so.1.2013.03.2 ../../../../lib/libhc.so.1 ../../../../lib/libhc.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 77 [ 94%] Built target hc make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/SimDivPickers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 94%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSimDivPickers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/DistPicker.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 63 [ 95%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSimDivPickers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/MaxMinPicker.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 95%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DSimDivPickers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/HierarchicalClusterPicker.cpp Linking CXX shared library ../../lib/libSimDivPickers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSimDivPickers.so.1 -o ../../lib/libSimDivPickers.so.1.2013.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libhc.so.1.2013.03.2 ../../lib/libRDGeneral.so.1.2013.03.2 cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libSimDivPickers.so.1.2013.03.2 ../../lib/libSimDivPickers.so.1 ../../lib/libSimDivPickers.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 63 [ 95%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/SimDivPickers /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 95%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/DistPicker.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 95%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/MaxMinPicker.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 64 [ 96%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/HierarchicalClusterPicker.cpp Linking CXX static library libSimDivPickers_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -P CMakeFiles/SimDivPickers_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers_static.dir/link.txt --verbose=1 /usr/bin/ar cr libSimDivPickers_static.a CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o /usr/bin/ranlib libSimDivPickers_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 64 [ 96%] Built target SimDivPickers_static make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/SimDivPickers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target rdSimDivPickers make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 85 [ 97%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdSimDivPickers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/Wrap/MaxMinPicker.cpp In file included from /«PKGBUILDDIR»/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:16: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdSimDivPickers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp In file included from /«PKGBUILDDIR»/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:16: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdSimDivPickers_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /«PKGBUILDDIR»/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp In file included from /«PKGBUILDDIR»/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:13: In file included from /usr/include/python2.7/numpy/oldnumeric.h:1: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdSimDivPickers.so -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libSimDivPickers.so.1.2013.03.2 ../../../lib/libhc.so.1.2013.03.2 ../../../lib/libDataStructs.so.1.2013.03.2 ../../../lib/libRDGeneral.so.1.2013.03.2 ../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 85 [ 97%] Built target rdSimDivPickers make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target Clustering make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh/Clustering.cpp In file included from /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh/Clustering.cpp:15: In file included from /usr/include/python2.7/numpy/arrayobject.h:15: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:17: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728: /usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ 1 warning generated. Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,Clustering.so -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libhc.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Built target Clustering make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/DependInfo.cmake --color= Scanning dependencies of target hc_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/hc.c.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/hc_static.dir/hc.c.o -c /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh/hc.c /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/hcdriver.c.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/hc_static.dir/hcdriver.c.o -c /«PKGBUILDDIR»/Code/ML/Cluster/Murtagh/hcdriver.c Linking C static library libhc_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -P CMakeFiles/hc_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc_static.dir/link.txt --verbose=1 /usr/bin/ar cr libhc_static.a CMakeFiles/hc_static.dir/hc.c.o CMakeFiles/hc_static.dir/hcdriver.c.o /usr/bin/ranlib libhc_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Built target hc_static make -f Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/build.make Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/ML/FeatureSelect/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/FeatureSelect/Wrap /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/DependInfo.cmake --color= Scanning dependencies of target rdFeatSelect make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/build.make Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building CXX object Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/rdFeatSelect.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/FeatureSelect/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_THREADSAFE_SSS -DrdFeatSelect_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -I/«PKGBUILDDIR»/External/cmim-1.0 -o CMakeFiles/rdFeatSelect.dir/rdFeatSelect.cpp.o -c /«PKGBUILDDIR»/Code/ML/FeatureSelect/Wrap/rdFeatSelect.cpp Linking CXX shared module ../../../../rdkit/ML/FeatureSelect/rdFeatSelect.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/ML/FeatureSelect/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFeatSelect.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,rdFeatSelect.so -o ../../../../rdkit/ML/FeatureSelect/rdFeatSelect.so CMakeFiles/rdFeatSelect.dir/rdFeatSelect.cpp.o ../../../../External/cmim-1.0/libfastentropy.a ../../../../lib/libDataStructs.so.1.2013.03.2 ../../../../lib/libRDGeneral.so.1.2013.03.2 ../../../../lib/libRDBoost.so.1.2013.03.2 -lpython2.7 -lboost_thread-mt -lboost_system-mt -lboost_python -lpthread /usr/bin/ld: ../../../../External/cmim-1.0/libfastentropy.a(fastentropy.cc.o): relocation R_X86_64_32S against `fe_logn' can not be used when making a shared object; recompile with -fPIC ../../../../External/cmim-1.0/libfastentropy.a: error adding symbols: Bad value clang: error: linker command failed with exit code 1 (use -v to see invocation) make[3]: *** [rdkit/ML/FeatureSelect/rdFeatSelect.so] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make[2]: *** [Code/ML/FeatureSelect/Wrap/CMakeFiles/rdFeatSelect.dir/all] Error 2 make[1]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make[2]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make[1]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130715-1552 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 837692 Build-Time: 2214 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 48 Job: rdkit_201303-1 Machine Architecture: amd64 Package: rdkit Package-Time: 2317 Source-Version: 201303-1 Space: 837692 Status: attempted Version: 201303-1clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20130715-1552 Build needed 00:38:37, 837692k disc space DC-Status: Failed 2319.74727491s DC-Time-Estimation: 2319.74727491 versus expected 2907 (r/m: 0.2531537514631992 ; m: 2319.74727491)