DC-Build-Header: librostlab-blast 1.0.1-3 / 2014-09-04 18:20:23 +0000 DC-Task: source:librostlab-blast version:1.0.1-3 architecture:any chroot:unstable esttime:485 logfile:/tmp/librostlab-blast_1.0.1-3_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " librostlab-blast_1.0.1-3' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-11-43.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librostlab-blast 1.0.1-3clang1 (amd64) 04 Sep 2014 18:20 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librostlab-blast Version: 1.0.1-3clang1 Source Version: 1.0.1-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/librostlab-blast-5SF9ue/librostlab-blast-1.0.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librostlab-blast-5SF9ue' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-42a58562-0542-4a6a-a002-459e60e0b857' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [233 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2014-09-03-1436.55.pdiff [24.7 kB] Get:6 http://localhost:9999 unstable/main 2014-09-03-2030.01.pdiff [10.5 kB] Get:7 http://localhost:9999 unstable/main 2014-09-04-0229.22.pdiff [7545 B] Get:8 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [14.0 kB] Get:9 http://localhost:9999 unstable/main amd64 2014-09-03-1436.55.pdiff [26.7 kB] Get:10 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [14.0 kB] Get:11 http://localhost:9999 unstable/main amd64 2014-09-03-2030.01.pdiff [12.4 kB] Get:12 http://localhost:9999 unstable/main amd64 2014-09-04-0229.22.pdiff [5892 B] Get:13 http://localhost:9999 unstable/main amd64 2014-09-04-0831.05.pdiff [18.1 kB] Get:14 http://localhost:9999 unstable/main 2014-09-03-1436.55.pdiff [3960 B] Get:15 http://localhost:9999 unstable/main 2014-09-03-2030.01.pdiff [1010 B] Get:16 http://localhost:9999 unstable/main 2014-09-04-0229.22.pdiff [648 B] Get:17 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [61 B] Get:18 http://localhost:9999 unstable/main amd64 2014-09-04-0831.05.pdiff [18.1 kB] Get:19 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [61 B] Fetched 382 kB in 4s (81.7 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3310 kB of archives. After this operation, 50.2 kB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main binutils amd64 2.24.51.20140903-1 [3310 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3310 kB in 0s (35.0 MB/s) (Reading database ... 15135 files and directories currently installed.) Preparing to unpack .../binutils_2.24.51.20140903-1_amd64.deb ... Unpacking binutils (2.24.51.20140903-1) over (2.24.51.20140818-1) ... Setting up binutils (2.24.51.20140903-1) ... Processing triggers for libc-bin (2.19-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/ Need to get 390 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main librostlab-blast 1.0.1-3 (dsc) [2390 B] Get:2 http://localhost:9999/debian/ unstable/main librostlab-blast 1.0.1-3 (tar) [384 kB] Get:3 http://localhost:9999/debian/ unstable/main librostlab-blast 1.0.1-3 (diff) [3580 B] Fetched 390 kB in 1s (283 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.5 + echo 'Install of clang-3.5' Install of clang-3.5 + apt-get update Hit http://localhost:9999 unstable InRelease Get:1 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:2 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Fetched 23.6 kB in 1s (14.4 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.5 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libbsd0 libclang-common-3.5-dev libclang1-3.5 libedit2 libffi6 libllvm3.5 libobjc-4.9-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.5-doc Recommended packages: llvm-3.5-dev python The following NEW packages will be installed: clang-3.5 libbsd0 libclang-common-3.5-dev libclang1-3.5 libedit2 libffi6 libllvm3.5 libobjc-4.9-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After this operation, 132 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.1-2 [19.8 kB] Get:4 http://localhost:9999/debian/ unstable/main libllvm3.5 amd64 1:3.5-1 [7609 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.9.1-12 [112 kB] Get:6 http://localhost:9999/debian/ unstable/main libobjc-4.9-dev amd64 4.9.1-12 [372 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.5 amd64 1:3.5-1 [3628 kB] Get:8 http://localhost:9999/debian/ unstable/main libclang-common-3.5-dev amd64 1:3.5-1 [677 kB] Get:9 http://localhost:9999/debian/ unstable/main clang-3.5 amd64 1:3.5-1 [20.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.3 MB in 0s (36.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15135 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2) ... Selecting previously unselected package libllvm3.5:amd64. Preparing to unpack .../libllvm3.5_1%3a3.5-1_amd64.deb ... Unpacking libllvm3.5:amd64 (1:3.5-1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.1-12_amd64.deb ... Unpacking libobjc4:amd64 (4.9.1-12) ... Selecting previously unselected package libobjc-4.9-dev:amd64. Preparing to unpack .../libobjc-4.9-dev_4.9.1-12_amd64.deb ... Unpacking libobjc-4.9-dev:amd64 (4.9.1-12) ... Selecting previously unselected package libclang1-3.5:amd64. Preparing to unpack .../libclang1-3.5_1%3a3.5-1_amd64.deb ... Unpacking libclang1-3.5:amd64 (1:3.5-1) ... Selecting previously unselected package libclang-common-3.5-dev. Preparing to unpack .../libclang-common-3.5-dev_1%3a3.5-1_amd64.deb ... Unpacking libclang-common-3.5-dev (1:3.5-1) ... Selecting previously unselected package clang-3.5. Preparing to unpack .../clang-3.5_1%3a3.5-1_amd64.deb ... Unpacking clang-3.5 (1:3.5-1) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libffi6:amd64 (3.1-2) ... Setting up libllvm3.5:amd64 (1:3.5-1) ... Setting up libobjc4:amd64 (4.9.1-12) ... Setting up libobjc-4.9-dev:amd64 (4.9.1-12) ... Setting up libclang1-3.5:amd64 (1:3.5-1) ... Setting up libclang-common-3.5-dev (1:3.5-1) ... Setting up clang-3.5 (1:3.5-1) ... Processing triggers for libc-bin (2.19-10) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.5 g++-4.6 + ln -s clang-3.5 gcc-4.6 + ln -s clang-3.5 cpp-4.6 + ln -s clang-3.5 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.5 g++-4.7 + ln -s clang-3.5 gcc-4.7 + ln -s clang-3.5 cpp-4.7 + ln -s clang-3.5 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.5 g++-4.8 + ln -s clang-3.5 gcc-4.8 + ln -s clang-3.5 cpp-4.8 + ln -s clang-3.5 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.5 g++-4.9 + ln -s clang-3.5 gcc-4.9 + ln -s clang-3.5 cpp-4.9 + ln -s clang-3.5 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections + echo 'g++-4.9 hold' + dpkg --set-selections + cd - /«BUILDDIR» + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-GCwLrc/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/818 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15338 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package `sbuild-build-depends-librostlab-blast-dummy' in `/«BUILDDIR»/resolver-3fJ87E/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librostlab-blast build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf doxygen file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian latex-xcolor libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt5 libcgraph6 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdrm2 libegl1-mesa libfl-dev libfontconfig1 libfreetype6 libgbm1 libgd3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libllvm3.4 libltdl7 libmagic1 libnettle4 libopenjpeg5 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng12-0 libpoppler46 libpotrace0 libptexenc1 librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libsynctex1 libtasn1-6 libthai-data libthai0 libtiff5 libtool libtool-bin libunistring0 libvpx1 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-xcb1 libxapian22 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxxf86vm1 libzzip-0-13 m4 man-db po-debconf poppler-data preview-latex-style tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc gsfonts graphviz-doc groff cups-common libgd-tools gnutls-bin krb5-doc krb5-user libjasper-runtime liblcms2-utils librostlab-doc libtool-doc automaken gfortran fortran95-compiler gcj-jdk xapian-tools less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum xpdf-reader pdf-viewer gv postscript-viewer perl-tk python-pygments libfile-which-perl texlive-pstricks dot2tex libtcltk-ruby gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev fonts-liberation libegl1-mesa-drivers libgl1-mesa-dri libglib2.0-data shared-mime-info fonts-droid krb5-locales libltdl-dev xml-core libmail-sendmail-perl lmodern python ruby wish texlive-fonts-recommended-doc tipa tex-gyre texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc texlive-pictures-doc prerex libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf doxygen file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian latex-xcolor libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt5 libcgraph6 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdrm2 libegl1-mesa libfl-dev libfontconfig1 libfreetype6 libgbm1 libgd3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libllvm3.4 libltdl7 libmagic1 libnettle4 libopenjpeg5 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng12-0 libpoppler46 libpotrace0 libptexenc1 librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libsynctex1 libtasn1-6 libthai-data libthai0 libtiff5 libtool libtool-bin libunistring0 libvpx1 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-xcb1 libxapian22 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxxf86vm1 libzzip-0-13 m4 man-db po-debconf poppler-data preview-latex-style sbuild-build-depends-librostlab-blast-dummy tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures x11-common xdg-utils 0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB/102 MB of archives. After this operation, 358 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.3.0-1 [25.8 kB] Get:2 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-7 [1142 kB] Get:3 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:4 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.7.1-1 [990 kB] Get:5 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.19.2-2 [30.8 kB] Get:6 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-3 [175 kB] Get:7 http://localhost:9999/debian/ unstable/main libhogweed2 amd64 2.7.1-3 [125 kB] Get:8 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.3-2 [153 kB] Get:9 http://localhost:9999/debian/ unstable/main libtasn1-6 amd64 4.1-1 [48.2 kB] Get:10 http://localhost:9999/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.7-2 [685 kB] Get:11 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.9-5 [11.7 kB] Get:12 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.12.1+dfsg-9 [57.8 kB] Get:13 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.12.1+dfsg-9 [113 kB] Get:14 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.12.1+dfsg-9 [302 kB] Get:15 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.12.1+dfsg-9 [150 kB] Get:16 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.29-1 [135 kB] Get:17 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.19-1 [237 kB] Get:18 http://localhost:9999/debian/ unstable/main libsqlite3-0 amd64 3.8.6-1 [431 kB] Get:19 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-4 [797 kB] Get:20 http://localhost:9999/debian/ unstable/main libsigsegv2 amd64 2.10-4 [28.8 kB] Get:21 http://localhost:9999/debian/ unstable/main m4 amd64 1.4.17-4 [254 kB] Get:22 http://localhost:9999/debian/ unstable/main libfl-dev amd64 2.5.39-8 [75.0 kB] Get:23 http://localhost:9999/debian/ unstable/main flex amd64 2.5.39-8 [422 kB] Get:24 http://localhost:9999/debian/ unstable/main libavahi-common-data amd64 0.6.31-4 [98.3 kB] Get:25 http://localhost:9999/debian/ unstable/main libavahi-common3 amd64 0.6.31-4 [50.6 kB] Get:26 http://localhost:9999/debian/ unstable/main libavahi-client3 amd64 0.6.31-4 [53.8 kB] Get:27 http://localhost:9999/debian/ unstable/main libdrm2 amd64 2.4.56-1 [29.4 kB] Get:28 http://localhost:9999/debian/ unstable/main libglapi-mesa amd64 10.2.6-1 [53.4 kB] Get:29 http://localhost:9999/debian/ unstable/main libllvm3.4 amd64 1:3.4.2-8 [6722 kB] Get:30 http://localhost:9999/debian/ unstable/main libwayland-client0 amd64 1.5.0-1 [22.6 kB] Get:31 http://localhost:9999/debian/ unstable/main libwayland-server0 amd64 1.5.0-1 [27.6 kB] Get:32 http://localhost:9999/debian/ unstable/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:33 http://localhost:9999/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:34 http://localhost:9999/debian/ unstable/main libxcb1 amd64 1.10-3 [42.6 kB] Get:35 http://localhost:9999/debian/ unstable/main libx11-data all 2:1.6.2-3 [126 kB] Get:36 http://localhost:9999/debian/ unstable/main libx11-6 amd64 2:1.6.2-3 [729 kB] Get:37 http://localhost:9999/debian/ unstable/main libxcb-dri2-0 amd64 1.10-3 [12.4 kB] Get:38 http://localhost:9999/debian/ unstable/main libxext6 amd64 2:1.3.2-1 [56.5 kB] Get:39 http://localhost:9999/debian/ unstable/main libxfixes3 amd64 1:5.0.1-2 [20.9 kB] Get:40 http://localhost:9999/debian/ unstable/main libgbm1 amd64 10.2.6-1 [138 kB] Get:41 http://localhost:9999/debian/ unstable/main libx11-xcb1 amd64 2:1.6.2-3 [163 kB] Get:42 http://localhost:9999/debian/ unstable/main libxcb-render0 amd64 1.10-3 [16.7 kB] Get:43 http://localhost:9999/debian/ unstable/main libxcb-shape0 amd64 1.10-3 [11.2 kB] Get:44 http://localhost:9999/debian/ unstable/main libxcb-xfixes0 amd64 1.10-3 [14.2 kB] Get:45 http://localhost:9999/debian/ unstable/main libegl1-mesa amd64 10.2.6-1 [88.1 kB] Get:46 http://localhost:9999/debian/ unstable/main libpng12-0 amd64 1.2.50-2 [172 kB] Get:47 http://localhost:9999/debian/ unstable/main libfreetype6 amd64 2.5.2-1.1 [456 kB] Get:48 http://localhost:9999/debian/ unstable/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:49 http://localhost:9999/debian/ unstable/main fontconfig-config all 2.11.0-6.1 [275 kB] Get:50 http://localhost:9999/debian/ unstable/main libfontconfig1 amd64 2.11.0-6.1 [328 kB] Get:51 http://localhost:9999/debian/ unstable/main libxcb-dri3-0 amd64 1.10-3 [10.7 kB] Get:52 http://localhost:9999/debian/ unstable/main libxcb-glx0 amd64 1.10-3 [25.9 kB] Get:53 http://localhost:9999/debian/ unstable/main libxcb-present0 amd64 1.10-3 [10.8 kB] Get:54 http://localhost:9999/debian/ unstable/main libxcb-sync1 amd64 1.10-3 [13.8 kB] Get:55 http://localhost:9999/debian/ unstable/main libxdamage1 amd64 1:1.1.4-2 [14.3 kB] Get:56 http://localhost:9999/debian/ unstable/main libxshmfence1 amd64 1.1-3 [6680 B] Get:57 http://localhost:9999/debian/ unstable/main libxxf86vm1 amd64 1:1.1.3-1 [19.1 kB] Get:58 http://localhost:9999/debian/ unstable/main libgl1-mesa-glx amd64 10.2.6-1 [151 kB] Get:59 http://localhost:9999/debian/ unstable/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:60 http://localhost:9999/debian/ unstable/main libxcb-shm0 amd64 1.10-3 [11.0 kB] Get:61 http://localhost:9999/debian/ unstable/main libxrender1 amd64 1:0.9.8-1 [33.5 kB] Get:62 http://localhost:9999/debian/ unstable/main libcairo2 amd64 1.12.16-3 [1003 kB] Get:63 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.40.0-5 [2421 kB] Get:64 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-3 [135 kB] Get:65 http://localhost:9999/debian/ unstable/main libcups2 amd64 1.7.5-1 [282 kB] Get:66 http://localhost:9999/debian/ unstable/main libcupsimage2 amd64 1.7.5-1 [115 kB] Get:67 http://localhost:9999/debian/ unstable/main libjpeg8 amd64 8d1-1 [119 kB] Get:68 http://localhost:9999/debian/ unstable/main libjbig0 amd64 2.1-3 [30.4 kB] Get:69 http://localhost:9999/debian/ unstable/main libtiff5 amd64 4.0.3-10 [211 kB] Get:70 http://localhost:9999/debian/ unstable/main libcupsfilters1 amd64 1.0.58-1 [104 kB] Get:71 http://localhost:9999/debian/ unstable/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:72 http://localhost:9999/debian/ unstable/main libvpx1 amd64 1.3.0-2.1 [596 kB] Get:73 http://localhost:9999/debian/ unstable/main libxpm4 amd64 1:3.5.11-1 [47.3 kB] Get:74 http://localhost:9999/debian/ unstable/main libgd3 amd64 2.1.0-4 [146 kB] Get:75 http://localhost:9999/debian/ unstable/main libgraphite2-3 amd64 1.2.4-3 [57.4 kB] Get:76 http://localhost:9999/debian/ unstable/main libharfbuzz0b amd64 0.9.35-1 [485 kB] Get:77 http://localhost:9999/debian/ unstable/main libicu52 amd64 52.1-5 [6774 kB] Get:78 http://localhost:9999/debian/ unstable/main libharfbuzz-icu0 amd64 0.9.35-1 [360 kB] Get:79 http://localhost:9999/debian/ unstable/main x11-common all 1:7.7+7 [287 kB] Get:80 http://localhost:9999/debian/ unstable/main libice6 amd64 2:1.0.9-1 [58.1 kB] Get:81 http://localhost:9999/debian/ unstable/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:82 http://localhost:9999/debian/ unstable/main libjasper1 amd64 1.900.1-debian1-2 [132 kB] Get:83 http://localhost:9999/debian/ unstable/main liblcms2-2 amd64 2.6-3 [140 kB] Get:84 http://localhost:9999/debian/ unstable/main libltdl7 amd64 2.4.2-1.10 [45.1 kB] Get:85 http://localhost:9999/debian/ unstable/main libthai-data all 0.1.21-1 [159 kB] Get:86 http://localhost:9999/debian/ unstable/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:87 http://localhost:9999/debian/ unstable/main fontconfig amd64 2.11.0-6.1 [403 kB] Get:88 http://localhost:9999/debian/ unstable/main libpango-1.0-0 amd64 1.36.6-1 [288 kB] Get:89 http://localhost:9999/debian/ unstable/main libpangoft2-1.0-0 amd64 1.36.6-1 [211 kB] Get:90 http://localhost:9999/debian/ unstable/main libpangocairo-1.0-0 amd64 1.36.6-1 [198 kB] Get:91 http://localhost:9999/debian/ unstable/main libpaper1 amd64 1.1.24+nmu3 [21.4 kB] Get:92 http://localhost:9999/debian/ unstable/main libopenjpeg5 amd64 1.5.2-2 [109 kB] Get:93 http://localhost:9999/debian/ unstable/main libpoppler46 amd64 0.26.4-1 [1210 kB] Get:94 http://localhost:9999/debian/ unstable/main libsm6 amd64 2:1.2.2-1 [33.1 kB] Get:95 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5.2 [283 kB] Get:96 http://localhost:9999/debian/ unstable/main libxt6 amd64 1:1.1.4-1 [180 kB] Get:97 http://localhost:9999/debian/ unstable/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:98 http://localhost:9999/debian/ unstable/main libxaw7 amd64 2:1.0.12-2 [196 kB] Get:99 http://localhost:9999/debian/ unstable/main libxi6 amd64 2:1.7.4-1 [79.0 kB] Get:100 http://localhost:9999/debian/ unstable/main libzzip-0-13 amd64 0.13.62-3 [55.5 kB] Get:101 http://localhost:9999/debian/ unstable/main poppler-data all 0.4.7-1 [1491 kB] Get:102 http://localhost:9999/debian/ unstable/main file amd64 1:5.19-1 [58.0 kB] Get:103 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.19.2-2 [120 kB] Get:104 http://localhost:9999/debian/ unstable/main libxapian22 amd64 1.2.18-1.1 [995 kB] Get:105 http://localhost:9999/debian/ unstable/main autoconf all 2.69-8 [340 kB] Get:106 http://localhost:9999/debian/ unstable/main autotools-dev all 20140510.1 [70.3 kB] Get:107 http://localhost:9999/debian/ unstable/main automake all 1:1.14.1-3 [725 kB] Get:108 http://localhost:9999/debian/ unstable/main autopoint all 0.19.2-2 [408 kB] Get:109 http://localhost:9999/debian/ unstable/main libbison-dev amd64 2:3.0.2.dfsg-2 [426 kB] Get:110 http://localhost:9999/debian/ unstable/main bison amd64 2:3.0.2.dfsg-2 [765 kB] Get:111 http://localhost:9999/debian/ unstable/main d-shlibs all 0.58 [16.3 kB] Get:112 http://localhost:9999/debian/ unstable/main gettext amd64 0.19.2-2 [1237 kB] Get:113 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:114 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu3 [220 kB] Get:115 http://localhost:9999/debian/ unstable/main debhelper all 9.20140817 [814 kB] Get:116 http://localhost:9999/debian/ unstable/main libtool-bin amd64 2.4.2-1.10 [81.6 kB] Get:117 http://localhost:9999/debian/ unstable/main libtool all 2.4.2-1.10 [190 kB] Get:118 http://localhost:9999/debian/ unstable/main dh-autoreconf all 9 [15.5 kB] Get:119 http://localhost:9999/debian/ unstable/main doxygen amd64 1.8.8-3 [2764 kB] Get:120 http://localhost:9999/debian/ unstable/main libcdt5 amd64 2.38.0-6 [62.5 kB] Get:121 http://localhost:9999/debian/ unstable/main libcgraph6 amd64 2.38.0-6 [84.8 kB] Get:122 http://localhost:9999/debian/ unstable/main libpathplan4 amd64 2.38.0-6 [65.8 kB] Get:123 http://localhost:9999/debian/ unstable/main libxdot4 amd64 2.38.0-6 [58.6 kB] Get:124 http://localhost:9999/debian/ unstable/main libgvc6 amd64 2.38.0-6 [639 kB] Get:125 http://localhost:9999/debian/ unstable/main libgvpr2 amd64 2.38.0-6 [212 kB] Get:126 http://localhost:9999/debian/ unstable/main graphviz amd64 2.38.0-6 [716 kB] Get:127 http://localhost:9999/debian/ unstable/main tex-common all 5.02 [625 kB] Get:128 http://localhost:9999/debian/ unstable/main libkpathsea6 amd64 2014.20140528.34243-5 [152 kB] Get:129 http://localhost:9999/debian/ unstable/main libptexenc1 amd64 2014.20140528.34243-5 [53.4 kB] Get:130 http://localhost:9999/debian/ unstable/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:131 http://localhost:9999/debian/ unstable/main libgs9-common all 9.06~dfsg-1 [1978 kB] Get:132 http://localhost:9999/debian/ unstable/main libgs9 amd64 9.06~dfsg-1 [1911 kB] Get:133 http://localhost:9999/debian/ unstable/main libpotrace0 amd64 1.11-2 [24.4 kB] Get:134 http://localhost:9999/debian/ unstable/main libsynctex1 amd64 2014.20140528.34243-5 [60.6 kB] Get:135 http://localhost:9999/debian/ unstable/main texlive-binaries amd64 2014.20140528.34243-5 [6752 kB] Get:136 http://localhost:9999/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu3 [17.1 kB] Get:137 http://localhost:9999/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7.1 [64.6 kB] Get:138 http://localhost:9999/debian/ unstable/main texlive-base all 2014.20140821-1 [17.7 MB] Get:139 http://localhost:9999/debian/ unstable/main texlive-latex-base all 2014.20140821-1 [858 kB] Get:140 http://localhost:9999/debian/ unstable/main texlive-latex-recommended all 2014.20140821-1 [7550 kB] Get:141 http://localhost:9999/debian/ unstable/main latex-xcolor all 2014.20140821-1 [28.4 kB] Get:142 http://localhost:9999/debian/ unstable/main librostlab3 amd64 1.0.20-4 [5862 B] Get:143 http://localhost:9999/debian/ unstable/main librostlab3-dev amd64 1.0.20-4 [12.6 kB] Get:144 http://localhost:9999/debian/ unstable/main preview-latex-style all 11.87-1 [317 kB] Get:145 http://localhost:9999/debian/ unstable/main texlive-fonts-recommended all 2014.20140821-1 [5710 kB] Get:146 http://localhost:9999/debian/ unstable/main texlive-pictures all 2014.20140821-1 [3013 kB] Get:147 http://localhost:9999/debian/ unstable/main texlive-latex-extra all 2014.20140821-1 [7563 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 4s (24.5 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 15338 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.3.0-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-7_amd64.deb ... Unpacking groff-base (1.22.2-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5_amd64.deb ... Unpacking bsdmainutils (9.0.5) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_amd64.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.19.2-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.2-2) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-3_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-3) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-3_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-3) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.1-1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.1-1) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.7-2_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.7-2) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-9_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-9_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-9_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-9_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.29-1_amd64.deb ... Unpacking libidn11:amd64 (1.29-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.19-1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.19-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.6-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.6-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-4_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-4_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-4) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-4_amd64.deb ... Unpacking m4 (1.4.17-4) ... Selecting previously unselected package libfl-dev:amd64. Preparing to unpack .../libfl-dev_2.5.39-8_amd64.deb ... Unpacking libfl-dev:amd64 (2.5.39-8) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.5.39-8_amd64.deb ... Unpacking flex (2.5.39-8) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.31-4_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.31-4) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.31-4_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.31-4) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.31-4_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.31-4) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.56-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.56-1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../libglapi-mesa_10.2.6-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (10.2.6-1) ... Selecting previously unselected package libllvm3.4:amd64. Preparing to unpack .../libllvm3.4_1%3a3.4.2-8_amd64.deb ... Unpacking libllvm3.4:amd64 (1:3.4.2-8) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../libwayland-client0_1.5.0-1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.5.0-1) ... Selecting previously unselected package libwayland-server0:amd64. Preparing to unpack .../libwayland-server0_1.5.0-1_amd64.deb ... Unpacking libwayland-server0:amd64 (1.5.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-3_all.deb ... Unpacking libx11-data (2:1.6.2-3) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-3_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../libxcb-dri2-0_1.10-3_amd64.deb ... 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Setting up libk5crypto3:amd64 (1.12.1+dfsg-9) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-9) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-9) ... Setting up libidn11:amd64 (1.29-1) ... Setting up libmagic1:amd64 (1:5.19-1) ... Setting up libsqlite3-0:amd64 (3.8.6-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-4) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up m4 (1.4.17-4) ... Setting up libfl-dev:amd64 (2.5.39-8) ... Setting up flex (2.5.39-8) ... Setting up libavahi-common-data:amd64 (0.6.31-4) ... Setting up libavahi-common3:amd64 (0.6.31-4) ... Setting up libavahi-client3:amd64 (0.6.31-4) ... Setting up libdrm2:amd64 (2.4.56-1) ... Setting up libglapi-mesa:amd64 (10.2.6-1) ... Setting up libllvm3.4:amd64 (1:3.4.2-8) ... Setting up libwayland-client0:amd64 (1.5.0-1) ... Setting up libwayland-server0:amd64 (1.5.0-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.10-3) ... Setting up libx11-data (2:1.6.2-3) ... Setting up libx11-6:amd64 (2:1.6.2-3) ... Setting up libxcb-dri2-0:amd64 (1.10-3) ... Setting up libxext6:amd64 (2:1.3.2-1) ... Setting up libxfixes3:amd64 (1:5.0.1-2) ... Setting up libgbm1:amd64 (10.2.6-1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3) ... Setting up libxcb-render0:amd64 (1.10-3) ... Setting up libxcb-shape0:amd64 (1.10-3) ... Setting up libxcb-xfixes0:amd64 (1.10-3) ... Setting up libegl1-mesa:amd64 (10.2.6-1) ... Setting up libpng12-0:amd64 (1.2.50-2) ... Setting up libfreetype6:amd64 (2.5.2-1.1) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.1) ... Setting up libfontconfig1:amd64 (2.11.0-6.1) ... Setting up libxcb-dri3-0:amd64 (1.10-3) ... Setting up libxcb-glx0:amd64 (1.10-3) ... Setting up libxcb-present0:amd64 (1.10-3) ... Setting up libxcb-sync1:amd64 (1.10-3) ... Setting up libxdamage1:amd64 (1:1.1.4-2) ... Setting up libxshmfence1:amd64 (1.1-3) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1) ... Setting up libgl1-mesa-glx:amd64 (10.2.6-1) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-shm0:amd64 (1.10-3) ... Setting up libxrender1:amd64 (1:0.9.8-1) ... Setting up libcairo2:amd64 (1.12.16-3) ... Setting up libglib2.0-0:amd64 (2.40.0-5) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libcups2:amd64 (1.7.5-1) ... Setting up libjpeg8:amd64 (8d1-1) ... Setting up libjbig0:amd64 (2.1-3) ... Setting up libtiff5:amd64 (4.0.3-10) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libvpx1:amd64 (1.3.0-2.1) ... Setting up libxpm4:amd64 (1:3.5.11-1) ... Setting up libgd3:amd64 (2.1.0-4) ... Setting up libgraphite2-3:amd64 (1.2.4-3) ... Setting up libharfbuzz0b:amd64 (0.9.35-1) ... Setting up libicu52:amd64 (52.1-5) ... Setting up libharfbuzz-icu0:amd64 (0.9.35-1) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libjasper1:amd64 (1.900.1-debian1-2) ... Setting up liblcms2-2:amd64 (2.6-3) ... Setting up libltdl7:amd64 (2.4.2-1.10) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up fontconfig (2.11.0-6.1) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:amd64 (1.36.6-1) ... Setting up libpangoft2-1.0-0:amd64 (1.36.6-1) ... Setting up libpangocairo-1.0-0:amd64 (1.36.6-1) ... Setting up libpaper1:amd64 (1.1.24+nmu3) ... Creating config file /etc/papersize with new version Setting up libopenjpeg5:amd64 (1.5.2-2) ... Setting up libpoppler46:amd64 (0.26.4-1) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libunistring0:amd64 (0.9.3-5.2) ... Setting up libxt6:amd64 (1:1.1.4-1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2) ... Setting up libxi6:amd64 (2:1.7.4-1) ... Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up poppler-data (0.4.7-1) ... Setting up file (1:5.19-1) ... Setting up gettext-base (0.19.2-2) ... Setting up libxapian22 (1.2.18-1.1) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140510.1) ... Setting up automake (1:1.14.1-3) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.2-2) ... Setting up libbison-dev:amd64 (2:3.0.2.dfsg-2) ... Setting up bison (2:3.0.2.dfsg-2) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up d-shlibs (0.58) ... Setting up gettext (0.19.2-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up debhelper (9.20140817) ... Setting up libtool-bin (2.4.2-1.10) ... Setting up libtool (2.4.2-1.10) ... Setting up dh-autoreconf (9) ... Setting up doxygen (1.8.8-3) ... Setting up libcdt5 (2.38.0-6) ... Setting up libcgraph6 (2.38.0-6) ... Setting up libpathplan4 (2.38.0-6) ... Setting up libxdot4 (2.38.0-6) ... Setting up libgvc6 (2.38.0-6) ... Setting up libgvpr2 (2.38.0-6) ... Setting up graphviz (2.38.0-6) ... Setting up tex-common (5.02) ... Setting up libkpathsea6 (2014.20140528.34243-5) ... Setting up libptexenc1 (2014.20140528.34243-5) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.06~dfsg-1) ... Setting up libpotrace0 (1.11-2) ... Setting up libsynctex1 (2014.20140528.34243-5) ... Setting up libpaper-utils (1.1.24+nmu3) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.1) ... Setting up librostlab3 (1.0.20-4) ... Setting up librostlab3-dev (1.0.20-4) ... Setting up preview-latex-style (11.87-1) ... Setting up libcupsimage2:amd64 (1.7.5-1) ... Setting up libcupsfilters1:amd64 (1.0.58-1) ... Setting up libgs9 (9.06~dfsg-1) ... Setting up texlive-binaries (2014.20140528.34243-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2014.20140821-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common (5.02) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-fonts-recommended (2014.20140821-1) ... Setting up texlive-latex-base (2014.20140821-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.02) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2014.20140821-1) ... Processing triggers for tex-common (5.02) ... Running mktexlsr. This may take some time... done. Setting up latex-xcolor (2014.20140821-1) ... Setting up texlive-pictures (2014.20140821-1) ... Processing triggers for tex-common (5.02) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2014.20140821-1) ... Processing triggers for tex-common (5.02) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.24.51.20140903-1 dpkg-dev_1.17.13 g++-4.6_4.6.4-7 g++-4.9_4.9.1-12 gcc-4.6_4.6.4-7 gcc-4.7_4.7.4-3 gcc-4.9_4.9.1-12 libc6-dev_2.19-10 libstdc++-4.9-dev_4.9.1-12 libstdc++6_4.9.1-12 libstdc++6-4.6-dev_4.6.4-7 linux-libc-dev_3.14.15-2 Package versions: acl_2.2.52-1.1 adduser_3.113+nmu3 apt_1.0.7 autoconf_2.69-8 automake_1:1.14.1-3 autopoint_0.19.2-2 autotools-dev_20140510.1 base-files_7.5 base-passwd_3.5.35 bash_4.3-9 binutils_2.24.51.20140903-1 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.7 bzip2_1.0.6-7 clang-3.5_1:3.5-1 coreutils_8.23-2 cpp_4:4.9.1-3 cpp-4.6_4.6.4-7 cpp-4.7_4.7.4-3 cpp-4.9_4.9.1-12 d-shlibs_0.58 dash_0.5.7-4 dbus_1.8.6-2 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libdebconfclient0_0.191 libdevmapper1.02.1_2:1.02.88-1 libdpkg-perl_1.17.13 libdrm2_2.4.56-1 libedit2_3.1-20140620-2 libegl1-mesa_10.2.6-1 libexpat1_2.1.0-6 libfakeroot_1.20.1-1.1 libfcgi-perl_0.77-1+b1 libffi6_3.1-2 libfile-fcntllock-perl_0.22-1+b1 libfl-dev_2.5.39-8 libfontconfig1_2.11.0-6.1 libfreetype6_2.5.2-1.1 libgbm1_10.2.6-1 libgc1c2_1:7.2d-6.3 libgcc-4.7-dev_4.7.4-3 libgcc-4.9-dev_4.9.1-12 libgcc1_1:4.9.1-12 libgcrypt11_1.5.4-3 libgcrypt20_1.6.2-3 libgd3_2.1.0-4 libgdbm3_1.8.3-13 libgl1-mesa-glx_10.2.6-1 libglapi-mesa_10.2.6-1 libglib2.0-0_2.40.0-5 libgmp10_2:6.0.0+dfsg-6 libgmpxx4ldbl_2:6.0.0+dfsg-6 libgnutls-deb0-28_3.3.7-2 libgomp1_4.9.1-12 libgpg-error0_1.13-4 libgpm2_1.20.4-6.1 libgraphite2-3_1.2.4-3 libgs9_9.06~dfsg-1 libgs9-common_9.06~dfsg-1 libgssapi-krb5-2_1.12.1+dfsg-9 libgvc6_2.38.0-6 libgvpr2_2.38.0-6 libharfbuzz-icu0_0.9.35-1 libharfbuzz0b_0.9.35-1 libhogweed2_2.7.1-3 libice6_2:1.0.9-1 libicu52_52.1-5 libidn11_1.29-1 libijs-0.35_0.35-10 libisl10_0.12.2-2 libitm1_4.9.1-12 libjasper1_1.900.1-debian1-2 libjbig0_2.1-3 libjbig2dec0_0.11+20120125-1 libjpeg8_8d1-1 libk5crypto3_1.12.1+dfsg-9 libkeyutils1_1.5.9-5 libkmod2_18-1 libkpathsea6_2014.20140528.34243-5 libkrb5-3_1.12.1+dfsg-9 libkrb5support0_1.12.1+dfsg-9 liblcms2-2_2.6-3 libllvm3.4_1:3.4.2-8 libllvm3.5_1:3.5-1 liblocale-gettext-perl_1.05-8+b1 liblog-message-perl_0.8-1 liblog-message-simple-perl_0.10-2 liblsan0_4.9.1-12 libltdl7_2.4.2-1.10 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.19-1 libmodule-build-perl_0.420800-1 libmodule-pluggable-perl_5.1-1 libmodule-signature-perl_0.73-1 libmount1_2.20.1-5.8 libmpc2_0.9-4 libmpc3_1.0.2-1 libmpfr4_3.1.2-1 libmro-compat-perl_0.12-1 libncurses5_5.9+20140712-2 libncursesw5_5.9+20140712-2 libnettle4_2.7.1-3 libobjc-4.9-dev_4.9.1-12 libobjc4_4.9.1-12 libopenjpeg5_1.5.2-2 libp11-kit0_0.20.3-2 libpackage-constants-perl_0.04-1 libpam-cap_1:2.24-4 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam-systemd_208-8 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.6-1 libpangocairo-1.0-0_1.36.6-1 libpangoft2-1.0-0_1.36.6-1 libpaper-utils_1.1.24+nmu3 libpaper1_1.1.24+nmu3 libparams-util-perl_1.07-2+b1 libpathplan4_2.38.0-6 libpcre3_1:8.35-3 libpipeline1_1.3.0-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.50-2 libpod-latex-perl_0.61-1 libpod-readme-perl_0.11-1 libpoppler46_0.26.4-1 libpotrace0_1.11-2 libppl-c4_1:1.1-3 libppl13_1:1.1-3 libprocps3_1:3.3.9-7 libptexenc1_2014.20140528.34243-5 libquadmath0_4.9.1-12 libreadline6_6.3-8 libregexp-common-perl_2013031301-1 librostlab3_1.0.20-4 librostlab3-dev_1.0.20-4 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.2.4-17 libsm6_2:1.2.2-1 libsoftware-license-perl_0.103010-1 libsqlite3-0_3.8.6-1 libss2_1.42.12-1 libstdc++-4.9-dev_4.9.1-12 libstdc++6_4.9.1-12 libstdc++6-4.6-dev_4.6.4-7 libsub-exporter-perl_0.986-1 libsub-install-perl_0.928-1 libswitch-perl_2.17-1 libsynctex1_2014.20140528.34243-5 libsystemd-daemon0_208-8 libsystemd-journal0_208-8 libsystemd-login0_208-8 libtasn1-6_4.1-1 libterm-ui-perl_0.42-1 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b2 libtext-soundex-perl_3.4-1+b2 libtext-template-perl_1.46-1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.21-1 libthai0_0.1.21-1 libtiff5_4.0.3-10 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140712-2 libtool_2.4.2-1.10 libtool-bin_2.4.2-1.10 libtsan0_4.9.1-12 libubsan0_4.9.1-12 libudev1_208-8 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-24 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.8 libvpx1_1.3.0-2.1 libwayland-client0_1.5.0-1 libwayland-server0_1.5.0-1 libwrap0_7.6.q-25 libx11-6_2:1.6.2-3 libx11-data_2:1.6.2-3 libx11-xcb1_2:1.6.2-3 libxapian22_1.2.18-1.1 libxau6_1:1.0.8-1 libxaw7_2:1.0.12-2 libxcb-dri2-0_1.10-3 libxcb-dri3-0_1.10-3 libxcb-glx0_1.10-3 libxcb-present0_1.10-3 libxcb-render0_1.10-3 libxcb-shape0_1.10-3 libxcb-shm0_1.10-3 libxcb-sync1_1.10-3 libxcb-xfixes0_1.10-3 libxcb1_1.10-3 libxdamage1_1:1.1.4-2 libxdmcp6_1:1.1.1-1 libxdot4_2.38.0-6 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-2 libxi6_2:1.7.4-1 libxml2_2.9.1+dfsg1-4 libxmu6_2:1.1.2-1 libxpm4_1:3.5.11-1 libxrender1_1:0.9.8-1 libxshmfence1_1.1-3 libxt6_1:1.1.4-1 libxxf86vm1_1:1.1.3-1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.14.15-2 login_1:4.2-2+b1 lsb-base_4.1+Debian13 m4_1.4.17-4 make_4.0-8 man-db_2.6.7.1-1 mawk_1.3.3-17 mount_2.20.1-5.8 multiarch-support_2.19-10 ncurses-base_5.9+20140712-2 ncurses-bin_5.9+20140712-2 passwd_1:4.2-2+b1 patch_2.7.1-6 perl_5.20.0-6 perl-base_5.20.0-6 perl-modules_5.20.0-6 po-debconf_1.0.16+nmu3 poppler-data_0.4.7-1 preview-latex-style_11.87-1 procps_1:3.3.9-7 psmisc_22.21-2 readline-common_6.3-8 rename_0.20-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 sudo_1.8.9p5-1 systemd_208-8 systemd-sysv_208-8 sysv-rc_2.88dsf-53.4 sysvinit_2.88dsf-53.4 sysvinit-utils_2.88dsf-53.4 tar_1.27.1-2 tcpd_7.6.q-25 tex-common_5.02 texlive-base_2014.20140821-1 texlive-binaries_2014.20140528.34243-5 texlive-fonts-recommended_2014.20140821-1 texlive-latex-base_2014.20140821-1 texlive-latex-extra_2014.20140821-1 texlive-latex-recommended_2014.20140821-1 texlive-pictures_2014.20140821-1 tzdata_2014g-1 ucf_3.0030 udev_208-8 util-linux_2.20.1-5.8 vim_2:7.4.430-1 vim-common_2:7.4.430-1 vim-runtime_2:7.4.430-1 x11-common_1:7.7+7 xdg-utils_1.1.0~rc1+git20111210-7.1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Apr 13 21:40:23 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-3.dsc dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1 dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-3.debian.tar.xz Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 1.0.1-3clang1 User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-42a58562-0542-4a6a-a002-459e60e0b857 SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package librostlab-blast dpkg-buildpackage: source version 1.0.1-3clang1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build librostlab-blast-1.0.1 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --parallel --with autoreconf dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean --parallel rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean -O--parallel dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel --with autoreconf dh_testdir -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' configure.ac:7: installing './compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build --parallel make[2]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making all in lib make[4]: Entering directory '/«PKGBUILDDIR»/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /«PKGBUILDDIR»/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ /«PKGBUILDDIR»/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h make all-am make[5]: Entering directory '/«PKGBUILDDIR»/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from blast-parser-driver.cpp:19: ./rostlab/blast-parser-driver.h:61:12: error: 'token_type' (aka 'rostlab::blast::parser::token::yytokentype') is not a class, namespace, or scoped enumeration friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ In file included from blast-parser-parser.ypp:54: ./rostlab/blast-parser-driver.h:61:12: error: 'token_type' (aka 'rostlab::blast::parser::token::yytokentype') is not a class, namespace, or scoped enumeration friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ 5 errors generated. make[5]: *** [librostlab_blast_la-blast-parser-driver.lo] Error 1 make[5]: *** Waiting for unfinished jobs.... Makefile:538: recipe for target 'librostlab_blast_la-blast-parser-driver.lo' failed In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 5 errors generated. make[5]: *** [librostlab_blast_la-blast-parser-parser.lo] Error 1 Makefile:545: recipe for target 'librostlab_blast_la-blast-parser-parser.lo' failed make[5]: Leaving directory '/«PKGBUILDDIR»/lib' make[4]: *** [all] Error 2 Makefile:427: recipe for target 'all' failed make[4]: Leaving directory '/«PKGBUILDDIR»/lib' make[3]: *** [all-recursive] Error 1 make[2]: *** [all] Error 2 dh_auto_build: make -j10 returned exit code 2 make[1]: *** [override_dh_auto_build] Error 2 Makefile:472: recipe for target 'all-recursive' failed make[3]: Leaving directory '/«PKGBUILDDIR»' Makefile:382: recipe for target 'all' failed make[2]: Leaving directory '/«PKGBUILDDIR»' debian/rules:19: recipe for target 'override_dh_auto_build' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [build-arch] Error 2 debian/rules:6: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20140904-1822 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 8512 Build-Time: 24 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 50 Job: librostlab-blast_1.0.1-3 Machine Architecture: amd64 Package: librostlab-blast Package-Time: 104 Source-Version: 1.0.1-3 Space: 8512 Status: attempted Version: 1.0.1-3clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20140904-1822 Build needed 00:01:44, 8512k disc space DC-Status: Failed 104.698820155s DC-Time-Estimation: 104.698820155 versus expected 485 (r/m: 3.632334913440171 ; m: 104.698820155)