DC-Build-Header: mmtk 2.7.9-1 / 2014-09-04 18:01:12 +0000 DC-Task: source:mmtk version:2.7.9-1 architecture:any chroot:unstable esttime:602 logfile:/tmp/mmtk_2.7.9-1_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " mmtk_2.7.9-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-1-196.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mmtk 2.7.9-1clang1 (amd64) 04 Sep 2014 18:01 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mmtk Version: 2.7.9-1clang1 Source Version: 2.7.9-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/mmtk-I02S0e/mmtk-2.7.9' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mmtk-I02S0e' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-e94389a5-860b-49a6-811a-a612617ff43d' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [233 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2014-09-03-1436.55.pdiff [24.7 kB] Get:6 http://localhost:9999 unstable/main 2014-09-03-2030.01.pdiff [10.5 kB] Get:7 http://localhost:9999 unstable/main 2014-09-04-0229.22.pdiff [7545 B] Get:8 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [14.0 kB] Get:9 http://localhost:9999 unstable/main amd64 2014-09-03-1436.55.pdiff [26.7 kB] Get:10 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [14.0 kB] Get:11 http://localhost:9999 unstable/main amd64 2014-09-03-2030.01.pdiff [12.4 kB] Get:12 http://localhost:9999 unstable/main amd64 2014-09-04-0229.22.pdiff [5892 B] Get:13 http://localhost:9999 unstable/main amd64 2014-09-04-0831.05.pdiff [18.1 kB] Get:14 http://localhost:9999 unstable/main 2014-09-03-1436.55.pdiff [3960 B] Get:15 http://localhost:9999 unstable/main 2014-09-03-2030.01.pdiff [1010 B] Get:16 http://localhost:9999 unstable/main 2014-09-04-0229.22.pdiff [648 B] Get:17 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [61 B] Get:18 http://localhost:9999 unstable/main amd64 2014-09-04-0831.05.pdiff [18.1 kB] Get:19 http://localhost:9999 unstable/main 2014-09-04-0831.05.pdiff [61 B] Fetched 382 kB in 5s (69.1 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3310 kB of archives. After this operation, 50.2 kB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main binutils amd64 2.24.51.20140903-1 [3310 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3310 kB in 0s (29.9 MB/s) (Reading database ... 15135 files and directories currently installed.) Preparing to unpack .../binutils_2.24.51.20140903-1_amd64.deb ... Unpacking binutils (2.24.51.20140903-1) over (2.24.51.20140818-1) ... Setting up binutils (2.24.51.20140903-1) ... Processing triggers for libc-bin (2.19-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'mmtk' packaging is maintained in the 'Git' version control system at: git://anonscm.debian.org/debian-science/packages/mmtk.git Need to get 1228 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main mmtk 2.7.9-1 (dsc) [1416 B] Get:2 http://localhost:9999/debian/ unstable/main mmtk 2.7.9-1 (tar) [1214 kB] Get:3 http://localhost:9999/debian/ unstable/main mmtk 2.7.9-1 (diff) [13.2 kB] Fetched 1228 kB in 1s (682 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.5 + echo 'Install of clang-3.5' Install of clang-3.5 + apt-get update Hit http://localhost:9999 unstable InRelease Get:1 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:2 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Fetched 23.6 kB in 1s (12.1 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.5 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libbsd0 libclang-common-3.5-dev libclang1-3.5 libedit2 libffi6 libllvm3.5 libobjc-4.9-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.5-doc Recommended packages: llvm-3.5-dev python The following NEW packages will be installed: clang-3.5 libbsd0 libclang-common-3.5-dev libclang1-3.5 libedit2 libffi6 libllvm3.5 libobjc-4.9-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After this operation, 132 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.1-2 [19.8 kB] Get:4 http://localhost:9999/debian/ unstable/main libllvm3.5 amd64 1:3.5-1 [7609 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.9.1-12 [112 kB] Get:6 http://localhost:9999/debian/ unstable/main libobjc-4.9-dev amd64 4.9.1-12 [372 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.5 amd64 1:3.5-1 [3628 kB] Get:8 http://localhost:9999/debian/ unstable/main libclang-common-3.5-dev amd64 1:3.5-1 [677 kB] Get:9 http://localhost:9999/debian/ unstable/main clang-3.5 amd64 1:3.5-1 [20.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.3 MB in 1s (32.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15135 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2) ... Selecting previously unselected package libllvm3.5:amd64. Preparing to unpack .../libllvm3.5_1%3a3.5-1_amd64.deb ... Unpacking libllvm3.5:amd64 (1:3.5-1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.1-12_amd64.deb ... Unpacking libobjc4:amd64 (4.9.1-12) ... Selecting previously unselected package libobjc-4.9-dev:amd64. Preparing to unpack .../libobjc-4.9-dev_4.9.1-12_amd64.deb ... Unpacking libobjc-4.9-dev:amd64 (4.9.1-12) ... Selecting previously unselected package libclang1-3.5:amd64. Preparing to unpack .../libclang1-3.5_1%3a3.5-1_amd64.deb ... Unpacking libclang1-3.5:amd64 (1:3.5-1) ... Selecting previously unselected package libclang-common-3.5-dev. Preparing to unpack .../libclang-common-3.5-dev_1%3a3.5-1_amd64.deb ... Unpacking libclang-common-3.5-dev (1:3.5-1) ... Selecting previously unselected package clang-3.5. Preparing to unpack .../clang-3.5_1%3a3.5-1_amd64.deb ... Unpacking clang-3.5 (1:3.5-1) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libffi6:amd64 (3.1-2) ... Setting up libllvm3.5:amd64 (1:3.5-1) ... Setting up libobjc4:amd64 (4.9.1-12) ... Setting up libobjc-4.9-dev:amd64 (4.9.1-12) ... Setting up libclang1-3.5:amd64 (1:3.5-1) ... Setting up libclang-common-3.5-dev (1:3.5-1) ... Setting up clang-3.5 (1:3.5-1) ... Processing triggers for libc-bin (2.19-10) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.5 g++-4.6 + ln -s clang-3.5 gcc-4.6 + ln -s clang-3.5 cpp-4.6 + ln -s clang-3.5 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.5 g++-4.7 + ln -s clang-3.5 gcc-4.7 + ln -s clang-3.5 cpp-4.7 + ln -s clang-3.5 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.5 g++-4.8 + ln -s clang-3.5 gcc-4.8 + ln -s clang-3.5 cpp-4.8 + ln -s clang-3.5 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.5 g++-4.9 + ln -s clang-3.5 gcc-4.9 + ln -s clang-3.5 cpp-4.9 + ln -s clang-3.5 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections + dpkg --set-selections + echo 'g++-4.9 hold' + cd - /«BUILDDIR» + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-qkUZmn/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/816 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15338 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cython, libnetcdf-dev, python-all-dev, python-numpy, python-netcdf, python-scientific, python-sphinx (>= 1.0.7+dfsg) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cython, libnetcdf-dev, python-all-dev, python-numpy, python-netcdf, python-scientific, python-sphinx (>= 1.0.7+dfsg) dpkg-deb: building package `sbuild-build-depends-mmtk-dummy' in `/«BUILDDIR»/resolver-QbmYKb/apt_archive/sbuild-build-depends-mmtk-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mmtk build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cython debhelper docutils-common file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcf0 libcroco3 libcurl3-gnutls libexpat1-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgnutls26 libgssapi-krb5-2 libhdf5-8 libhogweed2 libidn11 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libmagic1 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnettle4 libp11-kit0 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-all-dev python-dev python-docutils python-jinja2 python-markupsafe python-minimal python-netcdf python-numpy python-pygments python-roman python-scientific python-sphinx python2.7 python2.7-dev python2.7-minimal sgml-base sphinx-common xml-core Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff gnutls-bin krb5-doc krb5-user netcdf-bin netcdf-doc less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french fonts-linuxlibertine ttf-linux-libertine python-jinja2-doc gfortran python-nose python-numpy-dbg python-numpy-doc ttf-bitstream-vera python-scientific-doc libjs-mathjax dvipng texlive-latex-extra texlive-fonts-recommended python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev ca-certificates libglib2.0-data shared-mime-info javascript-common krb5-locales pkg-config libsasl2-modules libmail-sendmail-perl python-pil libpaper-utils docutils-doc python-pkg-resources python-chardet pyro sphinx-doc The following NEW packages will be installed: bsdmainutils cython debhelper docutils-common file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcf0 libcroco3 libcurl3-gnutls libexpat1-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgnutls26 libgssapi-krb5-2 libhdf5-8 libhogweed2 libidn11 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libmagic1 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnettle4 libp11-kit0 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-all-dev python-dev python-docutils python-jinja2 python-markupsafe python-minimal python-netcdf python-numpy python-pygments python-roman python-scientific python-sphinx python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-mmtk-dummy sgml-base sphinx-common xml-core 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB/57.7 MB of archives. After this operation, 135 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.3.0-1 [25.8 kB] Get:2 http://localhost:9999/debian/ unstable/main libssl1.0.0 amd64 1.0.1i-2 [1026 kB] Get:3 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-7 [1142 kB] Get:4 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:5 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.7.1-1 [990 kB] Get:6 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.19.2-2 [30.8 kB] Get:7 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-3 [175 kB] Get:8 http://localhost:9999/debian/ unstable/main libhogweed2 amd64 2.7.1-3 [125 kB] Get:9 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.3-2 [153 kB] Get:10 http://localhost:9999/debian/ unstable/main libtasn1-6 amd64 4.1-1 [48.2 kB] Get:11 http://localhost:9999/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.7-2 [685 kB] Get:12 http://localhost:9999/debian/ unstable/main libgnutls26 amd64 2.12.23-17 [531 kB] Get:13 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.9-5 [11.7 kB] Get:14 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.12.1+dfsg-9 [57.8 kB] Get:15 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.12.1+dfsg-9 [113 kB] Get:16 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.12.1+dfsg-9 [302 kB] Get:17 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.12.1+dfsg-9 [150 kB] Get:18 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.29-1 [135 kB] Get:19 http://localhost:9999/debian/ unstable/main libsasl2-modules-db amd64 2.1.26.dfsg1-11 [66.8 kB] Get:20 http://localhost:9999/debian/ unstable/main libsasl2-2 amd64 2.1.26.dfsg1-11 [104 kB] Get:21 http://localhost:9999/debian/ unstable/main libldap-2.4-2 amd64 2.4.39-1.1+b1 [214 kB] Get:22 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.19-1 [237 kB] Get:23 http://localhost:9999/debian/ unstable/main libsqlite3-0 amd64 3.8.6-1 [431 kB] Get:24 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-4 [797 kB] Get:25 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.40.0-5 [2421 kB] Get:26 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-3 [135 kB] Get:27 http://localhost:9999/debian/ unstable/main librtmp1 amd64 2.4+20131018.git79459a2-4 [59.4 kB] Get:28 http://localhost:9999/debian/ unstable/main libssh2-1 amd64 1.4.3-4 [125 kB] Get:29 http://localhost:9999/debian/ unstable/main libcurl3-gnutls amd64 7.37.1-1 [247 kB] Get:30 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.9.1-12 [254 kB] Get:31 http://localhost:9999/debian/ unstable/main libhdf5-8 amd64 1.8.13+docs-8 [1047 kB] Get:32 http://localhost:9999/debian/ unstable/main libpython2.7-minimal amd64 2.7.8-6 [349 kB] Get:33 http://localhost:9999/debian/ unstable/main mime-support all 3.56 [35.5 kB] Get:34 http://localhost:9999/debian/ unstable/main libpython2.7-stdlib amd64 2.7.8-6 [1883 kB] Get:35 http://localhost:9999/debian/ unstable/main libpython2.7 amd64 2.7.8-6 [1055 kB] Get:36 http://localhost:9999/debian/ unstable/main libexpat1-dev amd64 2.1.0-6 [126 kB] Get:37 http://localhost:9999/debian/ unstable/main libpython2.7-dev amd64 2.7.8-6 [29.0 MB] Get:38 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5.2 [283 kB] Get:39 http://localhost:9999/debian/ unstable/main python2.7-minimal amd64 2.7.8-6 [1374 kB] Get:40 http://localhost:9999/debian/ unstable/main sgml-base all 1.26+nmu4 [14.6 kB] Get:41 http://localhost:9999/debian/ unstable/main file amd64 1:5.19-1 [58.0 kB] Get:42 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.19.2-2 [120 kB] Get:43 http://localhost:9999/debian/ unstable/main python2.7 amd64 2.7.8-6 [244 kB] Get:44 http://localhost:9999/debian/ unstable/main python-minimal amd64 2.7.8-1 [39.7 kB] Get:45 http://localhost:9999/debian/ unstable/main libpython-stdlib amd64 2.7.8-1 [19.2 kB] Get:46 http://localhost:9999/debian/ unstable/main python amd64 2.7.8-1 [151 kB] Get:47 http://localhost:9999/debian/ unstable/main cython amd64 0.20.2-1 [1393 kB] Get:48 http://localhost:9999/debian/ unstable/main gettext amd64 0.19.2-2 [1237 kB] Get:49 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:50 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu3 [220 kB] Get:51 http://localhost:9999/debian/ unstable/main debhelper all 9.20140817 [814 kB] Get:52 http://localhost:9999/debian/ unstable/main xml-core all 0.13+nmu2 [24.2 kB] Get:53 http://localhost:9999/debian/ unstable/main docutils-common all 0.12+dfsg-1 [185 kB] Get:54 http://localhost:9999/debian/ unstable/main libblas3 amd64 1.2.20110419-7 [159 kB] Get:55 http://localhost:9999/debian/ unstable/main libcf0 amd64 1:4.1.3-7.1+b1 [45.8 kB] Get:56 http://localhost:9999/debian/ unstable/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:57 http://localhost:9999/debian/ unstable/main libjs-underscore all 1.4.4-2 [49.1 kB] Get:58 http://localhost:9999/debian/ unstable/main libjs-sphinxdoc all 1.2.2+dfsg-3 [39.9 kB] Get:59 http://localhost:9999/debian/ unstable/main liblapack3 amd64 3.5.0-3 [1802 kB] Get:60 http://localhost:9999/debian/ unstable/main libnetcdfc7 amd64 1:4.1.3-7.1+b1 [277 kB] Get:61 http://localhost:9999/debian/ unstable/main libnetcdff5 amd64 1:4.1.3-7.1+b1 [102 kB] Get:62 http://localhost:9999/debian/ unstable/main libnetcdfc++4 amd64 1:4.1.3-7.1+b1 [54.4 kB] Get:63 http://localhost:9999/debian/ unstable/main libnetcdf-dev amd64 1:4.1.3-7.1+b1 [470 kB] Get:64 http://localhost:9999/debian/ unstable/main libpython-dev amd64 2.7.8-1 [19.3 kB] Get:65 http://localhost:9999/debian/ unstable/main libpython-all-dev amd64 2.7.8-1 [1008 B] Get:66 http://localhost:9999/debian/ unstable/main python-all amd64 2.7.8-1 [992 B] Get:67 http://localhost:9999/debian/ unstable/main python2.7-dev amd64 2.7.8-6 [276 kB] Get:68 http://localhost:9999/debian/ unstable/main python-dev amd64 2.7.8-1 [1180 B] Get:69 http://localhost:9999/debian/ unstable/main python-all-dev amd64 2.7.8-1 [1022 B] Get:70 http://localhost:9999/debian/ unstable/main python-roman all 2.0.0-1 [7898 B] Get:71 http://localhost:9999/debian/ unstable/main python-docutils all 0.12+dfsg-1 [361 kB] Get:72 http://localhost:9999/debian/ unstable/main python-markupsafe amd64 0.23-1+b1 [15.9 kB] Get:73 http://localhost:9999/debian/ unstable/main python-jinja2 all 2.7.3-1 [170 kB] Get:74 http://localhost:9999/debian/ unstable/main python-numpy amd64 1:1.8.2-2 [1630 kB] Get:75 http://localhost:9999/debian/ unstable/main python-scientific amd64 2.9.4-3 [156 kB] Get:76 http://localhost:9999/debian/ unstable/main python-netcdf amd64 2.9.4-3 [29.7 kB] Get:77 http://localhost:9999/debian/ unstable/main python-pygments all 1.6+dfsg-1 [547 kB] Get:78 http://localhost:9999/debian/ unstable/main sphinx-common all 1.2.2+dfsg-3 [391 kB] Get:79 http://localhost:9999/debian/ unstable/main python-sphinx all 1.2.2+dfsg-3 [269 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 4s (12.3 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 15338 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.3.0-1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1i-2_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1i-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-7_amd64.deb ... Unpacking groff-base (1.22.2-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5_amd64.deb ... Unpacking bsdmainutils (9.0.5) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_amd64.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.19.2-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.2-2) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-3_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-3) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-3_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-3) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.1-1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.1-1) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.7-2_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.7-2) ... Selecting previously unselected package libgnutls26:amd64. Preparing to unpack .../libgnutls26_2.12.23-17_amd64.deb ... Unpacking libgnutls26:amd64 (2.12.23-17) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-9_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-9_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-9_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-9_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-9) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.29-1_amd64.deb ... Unpacking libidn11:amd64 (1.29-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-11_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-11) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-11_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-11) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.39-1.1+b1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.39-1.1+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.19-1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.19-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.6-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.6-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-4_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-4) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.40.0-5_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.40.0-5) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20131018.git79459a2-4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20131018.git79459a2-4) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.4.3-4_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-4) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../libcurl3-gnutls_7.37.1-1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.37.1-1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.1-12_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.1-12) ... Selecting previously unselected package libhdf5-8:amd64. Preparing to unpack .../libhdf5-8_1.8.13+docs-8_amd64.deb ... Unpacking libhdf5-8:amd64 (1.8.13+docs-8) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.8-6_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.8-6) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.56_all.deb ... Unpacking mime-support (3.56) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.8-6_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.8-6) ... Selecting previously unselected package libpython2.7:amd64. Preparing to unpack .../libpython2.7_2.7.8-6_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.8-6) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../libexpat1-dev_2.1.0-6_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.1.0-6) ... Selecting previously unselected package libpython2.7-dev:amd64. Preparing to unpack .../libpython2.7-dev_2.7.8-6_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.8-6) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.8-6_amd64.deb ... Unpacking python2.7-minimal (2.7.8-6) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.26+nmu4_all.deb ... Unpacking sgml-base (1.26+nmu4) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.19-1_amd64.deb ... Unpacking file (1:5.19-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.2-2_amd64.deb ... Unpacking gettext-base (0.19.2-2) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.8-6_amd64.deb ... Unpacking python2.7 (2.7.8-6) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.8-1_amd64.deb ... Unpacking python-minimal (2.7.8-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.8-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.8-1) ... Selecting previously unselected package python. Preparing to unpack .../python_2.7.8-1_amd64.deb ... Unpacking python (2.7.8-1) ... Selecting previously unselected package cython. Preparing to unpack .../cython_0.20.2-1_amd64.deb ... Unpacking cython (0.20.2-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.2-2_amd64.deb ... Unpacking gettext (0.19.2-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20140817_all.deb ... Unpacking debhelper (9.20140817) ... Selecting previously unselected package xml-core. Preparing to unpack .../xml-core_0.13+nmu2_all.deb ... Unpacking xml-core (0.13+nmu2) ... Selecting previously unselected package docutils-common. Preparing to unpack .../docutils-common_0.12+dfsg-1_all.deb ... Unpacking docutils-common (0.12+dfsg-1) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-7_amd64.deb ... Unpacking libblas3 (1.2.20110419-7) ... Selecting previously unselected package libcf0. Preparing to unpack .../libcf0_1%3a4.1.3-7.1+b1_amd64.deb ... Unpacking libcf0 (1:4.1.3-7.1+b1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../libjs-jquery_1.7.2+dfsg-3.2_all.deb ... Unpacking libjs-jquery (1.7.2+dfsg-3.2) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../libjs-underscore_1.4.4-2_all.deb ... Unpacking libjs-underscore (1.4.4-2) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../libjs-sphinxdoc_1.2.2+dfsg-3_all.deb ... Unpacking libjs-sphinxdoc (1.2.2+dfsg-3) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-3_amd64.deb ... Unpacking liblapack3 (3.5.0-3) ... Selecting previously unselected package libnetcdfc7. Preparing to unpack .../libnetcdfc7_1%3a4.1.3-7.1+b1_amd64.deb ... Unpacking libnetcdfc7 (1:4.1.3-7.1+b1) ... Selecting previously unselected package libnetcdff5. Preparing to unpack .../libnetcdff5_1%3a4.1.3-7.1+b1_amd64.deb ... Unpacking libnetcdff5 (1:4.1.3-7.1+b1) ... Selecting previously unselected package libnetcdfc++4. Preparing to unpack .../libnetcdfc++4_1%3a4.1.3-7.1+b1_amd64.deb ... Unpacking libnetcdfc++4 (1:4.1.3-7.1+b1) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../libnetcdf-dev_1%3a4.1.3-7.1+b1_amd64.deb ... Unpacking libnetcdf-dev (1:4.1.3-7.1+b1) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../libpython-dev_2.7.8-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.8-1) ... Selecting previously unselected package libpython-all-dev:amd64. Preparing to unpack .../libpython-all-dev_2.7.8-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (2.7.8-1) ... Selecting previously unselected package python-all. Preparing to unpack .../python-all_2.7.8-1_amd64.deb ... Unpacking python-all (2.7.8-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../python2.7-dev_2.7.8-6_amd64.deb ... Unpacking python2.7-dev (2.7.8-6) ... Selecting previously unselected package python-dev. Preparing to unpack .../python-dev_2.7.8-1_amd64.deb ... Unpacking python-dev (2.7.8-1) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../python-all-dev_2.7.8-1_amd64.deb ... Unpacking python-all-dev (2.7.8-1) ... Selecting previously unselected package python-roman. Preparing to unpack .../python-roman_2.0.0-1_all.deb ... Unpacking python-roman (2.0.0-1) ... Selecting previously unselected package python-docutils. Preparing to unpack .../python-docutils_0.12+dfsg-1_all.deb ... Unpacking python-docutils (0.12+dfsg-1) ... Selecting previously unselected package python-markupsafe. Preparing to unpack .../python-markupsafe_0.23-1+b1_amd64.deb ... Unpacking python-markupsafe (0.23-1+b1) ... Selecting previously unselected package python-jinja2. Preparing to unpack .../python-jinja2_2.7.3-1_all.deb ... Unpacking python-jinja2 (2.7.3-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../python-numpy_1%3a1.8.2-2_amd64.deb ... Unpacking python-numpy (1:1.8.2-2) ... Selecting previously unselected package python-scientific. Preparing to unpack .../python-scientific_2.9.4-3_amd64.deb ... Unpacking python-scientific (2.9.4-3) ... Selecting previously unselected package python-netcdf. Preparing to unpack .../python-netcdf_2.9.4-3_amd64.deb ... Unpacking python-netcdf (2.9.4-3) ... Selecting previously unselected package python-pygments. Preparing to unpack .../python-pygments_1.6+dfsg-1_all.deb ... Unpacking python-pygments (1.6+dfsg-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../sphinx-common_1.2.2+dfsg-3_all.deb ... Unpacking sphinx-common (1.2.2+dfsg-3) ... Selecting previously unselected package python-sphinx. Preparing to unpack .../python-sphinx_1.2.2+dfsg-3_all.deb ... Unpacking python-sphinx (1.2.2+dfsg-3) ... Selecting previously unselected package sbuild-build-depends-mmtk-dummy. Preparing to unpack .../sbuild-build-depends-mmtk-dummy.deb ... Unpacking sbuild-build-depends-mmtk-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.3.0-1) ... Setting up libssl1.0.0:amd64 (1.0.1i-2) ... Setting up groff-base (1.22.2-7) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.19.2-2) ... Setting up libnettle4:amd64 (2.7.1-3) ... Setting up libhogweed2:amd64 (2.7.1-3) ... Setting up libp11-kit0:amd64 (0.20.3-2) ... Setting up libtasn1-6:amd64 (4.1-1) ... Setting up libgnutls-deb0-28:amd64 (3.3.7-2) ... Setting up libgnutls26:amd64 (2.12.23-17) ... Setting up libkeyutils1:amd64 (1.5.9-5) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-9) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-9) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-9) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-9) ... Setting up libidn11:amd64 (1.29-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-11) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-11) ... Setting up libldap-2.4-2:amd64 (2.4.39-1.1+b1) ... Setting up libmagic1:amd64 (1:5.19-1) ... Setting up libsqlite3-0:amd64 (3.8.6-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-4) ... Setting up libglib2.0-0:amd64 (2.40.0-5) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3) ... Setting up librtmp1:amd64 (2.4+20131018.git79459a2-4) ... Setting up libssh2-1:amd64 (1.4.3-4) ... Setting up libcurl3-gnutls:amd64 (7.37.1-1) ... Setting up libgfortran3:amd64 (4.9.1-12) ... Setting up libhdf5-8:amd64 (1.8.13+docs-8) ... Setting up libpython2.7-minimal:amd64 (2.7.8-6) ... Setting up mime-support (3.56) ... Setting up libpython2.7-stdlib:amd64 (2.7.8-6) ... Setting up libpython2.7:amd64 (2.7.8-6) ... Setting up libexpat1-dev:amd64 (2.1.0-6) ... Setting up libpython2.7-dev:amd64 (2.7.8-6) ... Setting up libunistring0:amd64 (0.9.3-5.2) ... Setting up python2.7-minimal (2.7.8-6) ... Setting up sgml-base (1.26+nmu4) ... Setting up file (1:5.19-1) ... Setting up gettext-base (0.19.2-2) ... Setting up python2.7 (2.7.8-6) ... Setting up python-minimal (2.7.8-1) ... Setting up libpython-stdlib:amd64 (2.7.8-1) ... Setting up python (2.7.8-1) ... Setting up cython (0.20.2-1) ... Setting up gettext (0.19.2-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up debhelper (9.20140817) ... Setting up xml-core (0.13+nmu2) ... Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libcf0 (1:4.1.3-7.1+b1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjs-underscore (1.4.4-2) ... Setting up libjs-sphinxdoc (1.2.2+dfsg-3) ... Setting up liblapack3 (3.5.0-3) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libnetcdfc7 (1:4.1.3-7.1+b1) ... Setting up libnetcdff5 (1:4.1.3-7.1+b1) ... Setting up libnetcdfc++4 (1:4.1.3-7.1+b1) ... Setting up libnetcdf-dev (1:4.1.3-7.1+b1) ... Setting up libpython-dev:amd64 (2.7.8-1) ... Setting up libpython-all-dev:amd64 (2.7.8-1) ... Setting up python-all (2.7.8-1) ... Setting up python2.7-dev (2.7.8-6) ... Setting up python-dev (2.7.8-1) ... Setting up python-all-dev (2.7.8-1) ... Setting up python-roman (2.0.0-1) ... Setting up python-markupsafe (0.23-1+b1) ... Setting up python-jinja2 (2.7.3-1) ... Setting up python-numpy (1:1.8.2-2) ... Setting up python-scientific (2.9.4-3) ... Setting up python-netcdf (2.9.4-3) ... Setting up python-pygments (1.6+dfsg-1) ... Setting up sphinx-common (1.2.2+dfsg-3) ... Processing triggers for sgml-base (1.26+nmu4) ... Setting up docutils-common (0.12+dfsg-1) ... Processing triggers for sgml-base (1.26+nmu4) ... Setting up python-docutils (0.12+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.2.2+dfsg-3) ... Setting up sbuild-build-depends-mmtk-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.24.51.20140903-1 dpkg-dev_1.17.13 g++-4.6_4.6.4-7 g++-4.9_4.9.1-12 gcc-4.6_4.6.4-7 gcc-4.7_4.7.4-3 gcc-4.9_4.9.1-12 libc6-dev_2.19-10 libstdc++-4.9-dev_4.9.1-12 libstdc++6_4.9.1-12 libstdc++6-4.6-dev_4.6.4-7 linux-libc-dev_3.14.15-2 Package versions: acl_2.2.52-1.1 adduser_3.113+nmu3 apt_1.0.7 base-files_7.5 base-passwd_3.5.35 bash_4.3-9 binutils_2.24.51.20140903-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.7 bzip2_1.0.6-7 clang-3.5_1:3.5-1 coreutils_8.23-2 cpp_4:4.9.1-3 cpp-4.6_4.6.4-7 cpp-4.7_4.7.4-3 cpp-4.9_4.9.1-12 cython_0.20.2-1 dash_0.5.7-4 dbus_1.8.6-2 debconf_1.5.53 debconf-i18n_1.5.53 debfoster_2.7-2 debhelper_9.20140817 debian-archive-keyring_2014.1 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.88-1 docutils-common_0.12+dfsg-1 dpkg_1.17.13 dpkg-dev_1.17.13 e2fslibs_1.42.12-1 e2fsprogs_1.42.12-1 fakeroot_1.20.1-1.1 file_1:5.19-1 findutils_4.4.2-9 g++_4:4.9.1-3 g++-4.6_4.6.4-7 g++-4.9_4.9.1-12 gcc_4:4.9.1-3 gcc-4.4-base_4.4.7-8 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-7 gcc-4.6-base_4.6.4-7 gcc-4.7_4.7.4-3 gcc-4.7-base_4.7.4-3 gcc-4.8-base_4.8.3-10 gcc-4.9_4.9.1-12 gcc-4.9-base_4.9.1-12 gettext_0.19.2-2 gettext-base_0.19.2-2 gnupg_1.4.18-3 gpgv_1.4.18-3 grep_2.20-2 groff-base_1.22.2-7 gzip_1.6-3 hostname_3.15 init_1.21 initscripts_2.88dsf-53.4 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.52-1.1 libalgorithm-c3-perl_0.09-1 libapt-pkg4.12_1.0.7 libarchive-extract-perl_0.72-1 libasan1_4.9.1-12 libasprintf0c2_0.19.2-2 libatomic1_4.9.1-12 libattr1_1:2.4.47-1 libaudit-common_1:2.3.7-1 libaudit1_1:2.3.7-1 libblas3_1.2.20110419-7 libblkid1_2.20.1-5.8 libbsd0_0.7.0-2 libbz2-1.0_1.0.6-7 libc-bin_2.19-10 libc-dev-bin_2.19-10 libc6_2.19-10 libc6-dev_2.19-10 libcap-ng0_0.7.4-2 libcap2_1:2.24-4 libcap2-bin_1:2.24-4 libcf0_1:4.1.3-7.1+b1 libcgi-fast-perl_1:2.02-1 libcgi-pm-perl_4.03-1 libcilkrts5_4.9.1-12 libclang-common-3.5-dev_1:3.5-1 libclang1-3.5_1:3.5-1 libclass-c3-perl_0.26-1 libclass-c3-xs-perl_0.13-2+b1 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.2-1 libcloog-ppl1_0.16.1-5 libcomerr2_1.42.12-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-1 libcurl3-gnutls_7.37.1-1 libdata-optlist-perl_0.109-1 libdata-section-perl_0.200006-1 libdb5.1_5.1.29-5 libdb5.3_5.3.28-6 libdbus-1-3_1.8.6-2 libdebconfclient0_0.191 libdevmapper1.02.1_2:1.02.88-1 libdpkg-perl_1.17.13 libedit2_3.1-20140620-2 libexpat1_2.1.0-6 libexpat1-dev_2.1.0-6 libfakeroot_1.20.1-1.1 libfcgi-perl_0.77-1+b1 libffi6_3.1-2 libfile-fcntllock-perl_0.22-1+b1 libgc1c2_1:7.2d-6.3 libgcc-4.7-dev_4.7.4-3 libgcc-4.9-dev_4.9.1-12 libgcc1_1:4.9.1-12 libgcrypt11_1.5.4-3 libgcrypt20_1.6.2-3 libgdbm3_1.8.3-13 libgfortran3_4.9.1-12 libglib2.0-0_2.40.0-5 libgmp10_2:6.0.0+dfsg-6 libgmpxx4ldbl_2:6.0.0+dfsg-6 libgnutls-deb0-28_3.3.7-2 libgnutls26_2.12.23-17 libgomp1_4.9.1-12 libgpg-error0_1.13-4 libgpm2_1.20.4-6.1 libgssapi-krb5-2_1.12.1+dfsg-9 libhdf5-8_1.8.13+docs-8 libhogweed2_2.7.1-3 libidn11_1.29-1 libisl10_0.12.2-2 libitm1_4.9.1-12 libjs-jquery_1.7.2+dfsg-3.2 libjs-sphinxdoc_1.2.2+dfsg-3 libjs-underscore_1.4.4-2 libk5crypto3_1.12.1+dfsg-9 libkeyutils1_1.5.9-5 libkmod2_18-1 libkrb5-3_1.12.1+dfsg-9 libkrb5support0_1.12.1+dfsg-9 liblapack3_3.5.0-3 libldap-2.4-2_2.4.39-1.1+b1 libllvm3.5_1:3.5-1 liblocale-gettext-perl_1.05-8+b1 liblog-message-perl_0.8-1 liblog-message-simple-perl_0.10-2 liblsan0_4.9.1-12 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.19-1 libmodule-build-perl_0.420800-1 libmodule-pluggable-perl_5.1-1 libmodule-signature-perl_0.73-1 libmount1_2.20.1-5.8 libmpc2_0.9-4 libmpc3_1.0.2-1 libmpfr4_3.1.2-1 libmro-compat-perl_0.12-1 libncurses5_5.9+20140712-2 libncursesw5_5.9+20140712-2 libnetcdf-dev_1:4.1.3-7.1+b1 libnetcdfc++4_1:4.1.3-7.1+b1 libnetcdfc7_1:4.1.3-7.1+b1 libnetcdff5_1:4.1.3-7.1+b1 libnettle4_2.7.1-3 libobjc-4.9-dev_4.9.1-12 libobjc4_4.9.1-12 libp11-kit0_0.20.3-2 libpackage-constants-perl_0.04-1 libpam-cap_1:2.24-4 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam-systemd_208-8 libpam0g_1.1.8-3.1 libparams-util-perl_1.07-2+b1 libpcre3_1:8.35-3 libpipeline1_1.3.0-1 libpod-latex-perl_0.61-1 libpod-readme-perl_0.11-1 libppl-c4_1:1.1-3 libppl13_1:1.1-3 libprocps3_1:3.3.9-7 libpython-all-dev_2.7.8-1 libpython-dev_2.7.8-1 libpython-stdlib_2.7.8-1 libpython2.7_2.7.8-6 libpython2.7-dev_2.7.8-6 libpython2.7-minimal_2.7.8-6 libpython2.7-stdlib_2.7.8-6 libquadmath0_4.9.1-12 libreadline6_6.3-8 libregexp-common-perl_2013031301-1 librtmp1_2.4+20131018.git79459a2-4 libsasl2-2_2.1.26.dfsg1-11 libsasl2-modules-db_2.1.26.dfsg1-11 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.2.4-17 libsoftware-license-perl_0.103010-1 libsqlite3-0_3.8.6-1 libss2_1.42.12-1 libssh2-1_1.4.3-4 libssl1.0.0_1.0.1i-2 libstdc++-4.9-dev_4.9.1-12 libstdc++6_4.9.1-12 libstdc++6-4.6-dev_4.6.4-7 libsub-exporter-perl_0.986-1 libsub-install-perl_0.928-1 libswitch-perl_2.17-1 libsystemd-daemon0_208-8 libsystemd-journal0_208-8 libsystemd-login0_208-8 libtasn1-6_4.1-1 libterm-ui-perl_0.42-1 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b2 libtext-soundex-perl_3.4-1+b2 libtext-template-perl_1.46-1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140712-2 libtsan0_4.9.1-12 libubsan0_4.9.1-12 libudev1_208-8 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-24 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.8 libwrap0_7.6.q-25 libxml2_2.9.1+dfsg1-4 linux-libc-dev_3.14.15-2 login_1:4.2-2+b1 lsb-base_4.1+Debian13 make_4.0-8 man-db_2.6.7.1-1 mawk_1.3.3-17 mime-support_3.56 mount_2.20.1-5.8 multiarch-support_2.19-10 ncurses-base_5.9+20140712-2 ncurses-bin_5.9+20140712-2 passwd_1:4.2-2+b1 patch_2.7.1-6 perl_5.20.0-6 perl-base_5.20.0-6 perl-modules_5.20.0-6 po-debconf_1.0.16+nmu3 procps_1:3.3.9-7 psmisc_22.21-2 python_2.7.8-1 python-all_2.7.8-1 python-all-dev_2.7.8-1 python-dev_2.7.8-1 python-docutils_0.12+dfsg-1 python-jinja2_2.7.3-1 python-markupsafe_0.23-1+b1 python-minimal_2.7.8-1 python-netcdf_2.9.4-3 python-numpy_1:1.8.2-2 python-pygments_1.6+dfsg-1 python-roman_2.0.0-1 python-scientific_2.9.4-3 python-sphinx_1.2.2+dfsg-3 python2.7_2.7.8-6 python2.7-dev_2.7.8-6 python2.7-minimal_2.7.8-6 readline-common_6.3-8 rename_0.20-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mmtk-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sphinx-common_1.2.2+dfsg-3 startpar_0.59-3 sudo_1.8.9p5-1 systemd_208-8 systemd-sysv_208-8 sysv-rc_2.88dsf-53.4 sysvinit_2.88dsf-53.4 sysvinit-utils_2.88dsf-53.4 tar_1.27.1-2 tcpd_7.6.q-25 tzdata_2014g-1 ucf_3.0030 udev_208-8 util-linux_2.20.1-5.8 vim_2:7.4.430-1 vim-common_2:7.4.430-1 vim-runtime_2:7.4.430-1 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Jun 16 12:36:17 2013 UTC using DSA key ID A59B1171 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mmtk_2.7.9-1.dsc dpkg-source: info: extracting mmtk in mmtk-2.7.9 dpkg-source: info: unpacking mmtk_2.7.9.orig.tar.gz dpkg-source: info: unpacking mmtk_2.7.9-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 2.7.9-1clang1 User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-e94389a5-860b-49a6-811a-a612617ff43d SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mmtk dpkg-buildpackage: source version 2.7.9-1clang1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mmtk-2.7.9 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2,sphinxdoc dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' # remove the cpython generated files distributed by upstream rm -f Src/MMTK_trajectory_action.c Src/MMTK_energy_term.c Src/MMTK_trajectory_generator.c Src/MMTK_state_accessor.c Src/MMTK_restraints.c # remove .pyc files rm -f # remove the doc rm -rf build make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean rm -f debian/python-mmtk.substvars rm -f debian/python-mmtk.*.debhelper rm -rf debian/python-mmtk/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build-arch dh build-arch --with python2,sphinxdoc dh_testdir -a dh_auto_configure -a dh_auto_build -a python setup.py build --force running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/MMTK copying MMTK/XML.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Visualization.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Utility.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Universe.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Units.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Trajectory.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ThreadManager.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/tess.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/surfm.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Subspace.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Solvation.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Skeleton.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Random.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/PyMOL.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Proteins.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ProteinFriction.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ProteinEnvironment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/PDBMoleculeFactory.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/PDBML.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/PDB.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ParticleProperties.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/NucleicAcids.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/MoleculeFactory.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/MoleculeEnvironment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/MolecularSurface.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Minimization.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/InternalCoordinates.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/GroupEnvironment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Geometry.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/FourierBasis.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Field.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Features.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Environment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Dynamics.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Deformation.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/DCD.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Database.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/CrystalEnvironment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ConfigIO.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ComplexEnvironment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Collections.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ChemicalObjects.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/ChargeFit.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/CCPNDataModel.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Bonds.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/Biopolymers.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/AtomEnvironment.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/__pkginfo__.py -> build/lib.linux-x86_64-2.7/MMTK copying MMTK/__init__.py -> build/lib.linux-x86_64-2.7/MMTK creating build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/SPCEFF.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/Restraints.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/NonBondedInteractions.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/MMForceField.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/LennardJonesFF.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/ForceFieldTest.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/ForceField.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/DeformationFF.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/CalphaFF.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/BondFF.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/BondedInteractions.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/ANMFF.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields copying MMTK/ForceFields/__init__.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields creating build/lib.linux-x86_64-2.7/MMTK/ForceFields/Amber copying MMTK/ForceFields/Amber/AmberForceField.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields/Amber copying MMTK/ForceFields/Amber/AmberData.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields/Amber copying MMTK/ForceFields/Amber/__init__.py -> build/lib.linux-x86_64-2.7/MMTK/ForceFields/Amber creating build/lib.linux-x86_64-2.7/MMTK/NormalModes copying MMTK/NormalModes/VibrationalModes.py -> build/lib.linux-x86_64-2.7/MMTK/NormalModes copying MMTK/NormalModes/EnergeticModes.py -> build/lib.linux-x86_64-2.7/MMTK/NormalModes copying MMTK/NormalModes/Core.py -> build/lib.linux-x86_64-2.7/MMTK/NormalModes copying MMTK/NormalModes/BrownianModes.py -> build/lib.linux-x86_64-2.7/MMTK/NormalModes copying MMTK/NormalModes/__init__.py -> build/lib.linux-x86_64-2.7/MMTK/NormalModes creating build/lib.linux-x86_64-2.7/MMTK/Tk copying MMTK/Tk/ProteinVisualization.py -> build/lib.linux-x86_64-2.7/MMTK/Tk copying MMTK/Tk/__init__.py -> build/lib.linux-x86_64-2.7/MMTK/Tk creating build/lib.linux-x86_64-2.7/MMTK/Tools copying MMTK/Tools/__init__.py -> build/lib.linux-x86_64-2.7/MMTK/Tools creating build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/TrajectoryViewer.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/TrajectoryServer.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/TrajectoryManager.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/TrajectoryInspector.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/Tkwindow.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/test.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/manager.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer copying MMTK/Tools/TrajectoryViewer/__init__.py -> build/lib.linux-x86_64-2.7/MMTK/Tools/TrajectoryViewer running build_ext building 'MMTK_DCD' extension C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/Src compile options: '-DLIBM_HAS_ERFC -D_LONG64_ -DEXTENDED_TYPES -IInclude -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' extra options: '-DNUMPY=1' x86_64-linux-gnu-gcc: Src/MMTK_DCD.c In file included from Src/MMTK_DCD.c:7: In file included from Include/MMTK/universe.h:8: In file included from Include/MMTK/core.h:11: In file included from Include/MMTK/arrayobject.h:2: In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/oldnumeric.h:1: In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ Src/MMTK_DCD.c:23:7: warning: comparison of array 'vars' not equal to a null pointer is always true [-Wtautological-pointer-compare] if (vars != NULL) { ^~~~ ~~~~ 2 warnings generated. x86_64-linux-gnu-gcc: Src/ReadDCD.c creating build/lib.linux-x86_64-2.7/MMTK/linux2 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/Src/MMTK_DCD.o build/temp.linux-x86_64-2.7/Src/ReadDCD.o -lm -o build/lib.linux-x86_64-2.7/MMTK/linux2/MMTK_DCD.so building 'MMTK_deformation' extension C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-DLIBM_HAS_ERFC -D_LONG64_ -DEXTENDED_TYPES -IInclude -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' extra options: '-DNUMPY=1 -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions -g' x86_64-linux-gnu-gcc: Src/MMTK_deformation.c clang: error: unknown argument: '-fkeep-inline-functions' error: Command "x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -DLIBM_HAS_ERFC -D_LONG64_ -DEXTENDED_TYPES -IInclude -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Src/MMTK_deformation.c -o build/temp.linux-x86_64-2.7/Src/MMTK_deformation.o -DNUMPY=1 -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions -g" failed with exit status 1 clang: error: unknown argument: '-fkeep-inline-functions' dh_auto_build: python setup.py build --force returned exit code 1 make: *** [build-arch] Error 1 debian/rules:34: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20140904-1802 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 11848 Build-Time: 4 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 31 Job: mmtk_2.7.9-1 Machine Architecture: amd64 Package: mmtk Package-Time: 67 Source-Version: 2.7.9-1 Space: 11848 Status: attempted Version: 2.7.9-1clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20140904-1802 Build needed 00:01:07, 11848k disc space DC-Status: Failed 68.435702083s DC-Time-Estimation: 68.435702083 versus expected 602 (r/m: 7.796578126280988 ; m: 68.435702083)