DC-Build-Header: biococoa 2.2.2-2 / 2015-03-26 08:25:37 +0000 DC-Task: source:biococoa version:2.2.2-2 architecture:any chroot:unstable esttime:212 logfile:/tmp/biococoa_2.2.2-2_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang biococoa_2.2.2-2' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-4-109.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ biococoa 2.2.2-2 (amd64) 26 Mar 2015 08:25 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: biococoa Version: 2.2.2-2 Source Version: 2.2.2-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/biococoa-CnJdFy/biococoa-2.2.2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/biococoa-CnJdFy' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-ab513e09-0539-4ba9-b97f-ba563eee7c9f' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [257 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2015-03-25-1448.37.pdiff [3021 B] Get:6 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [5545 B] Get:7 http://localhost:9999 unstable/main 2015-03-26-0248.39.pdiff [3389 B] Get:8 http://localhost:9999 unstable/main 2015-03-26-0248.39.pdiff [3389 B] Get:9 http://localhost:9999 unstable/main amd64 2015-03-25-1448.37.pdiff [4095 B] Get:10 http://localhost:9999 unstable/main amd64 2015-03-25-2049.47.pdiff [4595 B] Get:11 http://localhost:9999 unstable/main amd64 2015-03-26-0248.39.pdiff [3173 B] Get:12 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Get:13 http://localhost:9999 unstable/main amd64 2015-03-26-0248.39.pdiff [3173 B] Get:14 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Fetched 306 kB in 4s (63.5 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'biococoa' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/biococoa/trunk/ Need to get 370 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main biococoa 2.2.2-2 (dsc) [1491 B] Get:2 http://localhost:9999/debian/ unstable/main biococoa 2.2.2-2 (tar) [359 kB] Get:3 http://localhost:9999/debian/ unstable/main biococoa 2.2.2-2 (diff) [9346 B] Fetched 370 kB in 0s (1458 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/clang ────────── + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.6 + echo 'Install of clang-3.6' Install of clang-3.6 + apt-get update Hit http://localhost:9999 unstable InRelease Get:1 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:2 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Fetched 23.6 kB in 1s (12.6 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.6 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.6-doc Recommended packages: llvm-3.6-dev python The following NEW packages will be installed: clang-3.6 libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.1-2+b2 [20.1 kB] Get:4 http://localhost:9999/debian/ unstable/main libllvm3.6 amd64 1:3.6-2 [8137 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.9.2-10 [112 kB] Get:6 http://localhost:9999/debian/ unstable/main libobjc-4.9-dev amd64 4.9.2-10 [372 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.6 amd64 1:3.6-2 [3839 kB] Get:8 http://localhost:9999/debian/ unstable/main libclang-common-3.6-dev amd64 1:3.6-2 [706 kB] Get:9 http://localhost:9999/debian/ unstable/main clang-3.6 amd64 1:3.6-2 [25.8 MB] debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 39.2 MB in 1s (39.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11980 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+b2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+b2) ... Selecting previously unselected package libllvm3.6:amd64. Preparing to unpack .../libllvm3.6_1%3a3.6-2_amd64.deb ... Unpacking libllvm3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.2-10_amd64.deb ... Unpacking libobjc4:amd64 (4.9.2-10) ... Selecting previously unselected package libobjc-4.9-dev:amd64. Preparing to unpack .../libobjc-4.9-dev_4.9.2-10_amd64.deb ... Unpacking libobjc-4.9-dev:amd64 (4.9.2-10) ... Selecting previously unselected package libclang1-3.6:amd64. Preparing to unpack .../libclang1-3.6_1%3a3.6-2_amd64.deb ... Unpacking libclang1-3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libclang-common-3.6-dev. Preparing to unpack .../libclang-common-3.6-dev_1%3a3.6-2_amd64.deb ... Unpacking libclang-common-3.6-dev (1:3.6-2) ... Selecting previously unselected package clang-3.6. Preparing to unpack .../clang-3.6_1%3a3.6-2_amd64.deb ... Unpacking clang-3.6 (1:3.6-2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libffi6:amd64 (3.1-2+b2) ... Setting up libllvm3.6:amd64 (1:3.6-2) ... Setting up libobjc4:amd64 (4.9.2-10) ... Setting up libobjc-4.9-dev:amd64 (4.9.2-10) ... Setting up libclang1-3.6:amd64 (1:3.6-2) ... Setting up libclang-common-3.6-dev (1:3.6-2) ... Setting up clang-3.6 (1:3.6-2) ... Processing triggers for libc-bin (2.19-17) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.6 g++-4.6 + ln -s clang-3.6 gcc-4.6 + ln -s clang-3.6 cpp-4.6 + ln -s clang-3.6 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.6 g++-4.7 + ln -s clang-3.6 gcc-4.7 + ln -s clang-3.6 cpp-4.7 + ln -s clang-3.6 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.6 g++-4.8 + ln -s clang-3.6 gcc-4.8 + ln -s clang-3.6 cpp-4.8 + ln -s clang-3.6 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.6 g++-4.9 + ln -s clang-3.6 gcc-4.9 + ln -s clang-3.6 cpp-4.9 + ln -s clang-3.6 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections + echo 'g++-4.9 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.6 g++-5 + ln -s clang-3.6 gcc-5 + ln -s clang-3.6 cpp-5 + ln -s clang-3.6 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + cd - /«BUILDDIR» + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-3KMyAi/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/818 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), cdbs, gnustep-make, debhelper (>= 9), libgnustep-base-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), cdbs, gnustep-make, debhelper (>= 9), libgnustep-base-dev dpkg-deb: building package `sbuild-build-depends-biococoa-dummy' in `/«BUILDDIR»/resolver-63FP7J/apt_archive/sbuild-build-depends-biococoa-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install biococoa build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils ca-certificates cdbs debhelper file gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-make gobjc gobjc-4.9 groff-base intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libdbus-1-3 libglib2.0-0 libgnustep-base-dev libgnustep-base1.24 libgnutls-deb0-28 libhogweed2 libicu52 libmagic1 libnettle4 libp11-kit0 libpipeline1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 libxslt1.1 man-db openssl po-debconf Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gnustep-base-doc gnustep-make-doc gobjc-multilib gobjc-4.9-multilib gcc-4.9-doc libobjc4-dbg groff gnutls-bin www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev dbus libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils ca-certificates cdbs debhelper file gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-make gobjc gobjc-4.9 groff-base intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libdbus-1-3 libglib2.0-0 libgnustep-base-dev libgnustep-base1.24 libgnutls-deb0-28 libhogweed2 libicu52 libmagic1 libnettle4 libp11-kit0 libpipeline1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 libxslt1.1 man-db openssl po-debconf sbuild-build-depends-biococoa-dummy 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 28.1 MB/28.1 MB of archives. After this operation, 103 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.4.0-1 [27.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libssl1.0.0 amd64 1.0.1k-3 [1037 kB] Get:3 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.3-1 [1205 kB] Get:4 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.6 [183 kB] Get:5 http://localhost:9999/debian/ unstable/main man-db amd64 2.7.0.2-5 [1000 kB] Get:6 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.19.3-2 [31.3 kB] Get:7 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-5 [176 kB] Get:8 http://localhost:9999/debian/ unstable/main libhogweed2 amd64 2.7.1-5 [125 kB] Get:9 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:10 http://localhost:9999/debian/ unstable/main libtasn1-6 amd64 4.2-2 [48.6 kB] Get:11 http://localhost:9999/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.8-6 [694 kB] Get:12 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.22+15-2 [249 kB] Get:13 http://localhost:9999/debian/ unstable/main libicu52 amd64 52.1-8 [6780 kB] Get:14 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.2+dfsg1-3 [934 kB] Get:15 http://localhost:9999/debian/ unstable/main libavahi-common-data amd64 0.6.31-4+b2 [98.7 kB] Get:16 http://localhost:9999/debian/ unstable/main libavahi-common3 amd64 0.6.31-4+b2 [51.2 kB] Get:17 http://localhost:9999/debian/ unstable/main libdbus-1-3 amd64 1.8.16-1 [169 kB] Get:18 http://localhost:9999/debian/ unstable/main libavahi-client3 amd64 0.6.31-4+b2 [54.5 kB] Get:19 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.42.1-1 [2401 kB] Get:20 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:21 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:22 http://localhost:9999/debian/ unstable/main libxslt1.1 amd64 1.1.28-2+b2 [232 kB] Get:23 http://localhost:9999/debian/ unstable/main file amd64 1:5.22+15-2 [60.1 kB] Get:24 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.19.3-2 [121 kB] Get:25 http://localhost:9999/debian/ unstable/main autotools-dev all 20140911.1 [70.5 kB] Get:26 http://localhost:9999/debian/ unstable/main openssl amd64 1.0.1k-3 [677 kB] Get:27 http://localhost:9999/debian/ unstable/main ca-certificates all 20141019 [200 kB] Get:28 http://localhost:9999/debian/ unstable/main cdbs all 0.4.129 [76.3 kB] Get:29 http://localhost:9999/debian/ unstable/main gettext amd64 0.19.3-2 [1240 kB] Get:30 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:31 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu3 [220 kB] Get:32 http://localhost:9999/debian/ unstable/main debhelper all 9.20150101 [813 kB] Get:33 http://localhost:9999/debian/ unstable/main gnustep-common amd64 2.6.6-3 [119 kB] Get:34 http://localhost:9999/debian/ unstable/main gnustep-base-common all 1.24.7-1 [244 kB] Get:35 http://localhost:9999/debian/ unstable/main libgnustep-base1.24 amd64 1.24.7-1 [1254 kB] Get:36 http://localhost:9999/debian/ unstable/main gnustep-base-runtime amd64 1.24.7-1 [189 kB] Get:37 http://localhost:9999/debian/ unstable/main gobjc-4.9 amd64 4.9.2-10 [4990 kB] Get:38 http://localhost:9999/debian/ unstable/main gobjc amd64 4:4.9.2-2 [954 B] Get:39 http://localhost:9999/debian/ unstable/main gnustep-make all 2.6.6-3 [201 kB] Get:40 http://localhost:9999/debian/ unstable/main libgnustep-base-dev amd64 1.24.7-1 [1639 kB] Extracting templates from packages: 73% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 28.1 MB in 0s (34.9 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.4.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.0-1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1k-3_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1k-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_amd64.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6_amd64.deb ... Unpacking bsdmainutils (9.0.6) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.0.2-5_amd64.deb ... Unpacking man-db (2.7.0.2-5) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.19.3-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.3-2) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-2) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2) ... Selecting previously unselected package libicu52:amd64. Preparing to unpack .../libicu52_52.1-8_amd64.deb ... Unpacking libicu52:amd64 (52.1-8) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+dfsg1-3) ... Selecting previously unselected package libavahi-common-data:amd64. 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Selecting previously unselected package libgnustep-base-dev. Preparing to unpack .../libgnustep-base-dev_1.24.7-1_amd64.deb ... Unpacking libgnustep-base-dev (1.24.7-1) ... Selecting previously unselected package sbuild-build-depends-biococoa-dummy. Preparing to unpack .../sbuild-build-depends-biococoa-dummy.deb ... Unpacking sbuild-build-depends-biococoa-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.4.0-1) ... Setting up libssl1.0.0:amd64 (1.0.1k-3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.19.3-2) ... Setting up libnettle4:amd64 (2.7.1-5) ... Setting up libhogweed2:amd64 (2.7.1-5) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6) ... Setting up libmagic1:amd64 (1:5.22+15-2) ... Setting up libicu52:amd64 (52.1-8) ... Setting up libxml2:amd64 (2.9.2+dfsg1-3) ... Setting up libavahi-common-data:amd64 (0.6.31-4+b2) ... Setting up libavahi-common3:amd64 (0.6.31-4+b2) ... Setting up libdbus-1-3:amd64 (1.8.16-1) ... Setting up libavahi-client3:amd64 (0.6.31-4+b2) ... Setting up libglib2.0-0:amd64 (2.42.1-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3+b1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libxslt1.1:amd64 (1.1.28-2+b2) ... Setting up file (1:5.22+15-2) ... Setting up gettext-base (0.19.3-2) ... Setting up autotools-dev (20140911.1) ... Setting up openssl (1.0.1k-3) ... Setting up ca-certificates (20141019) ... Setting up cdbs (0.4.129) ... Setting up gettext (0.19.3-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up debhelper (9.20150101) ... Setting up gnustep-common (2.6.6-3) ... Setting up gnustep-base-common (1.24.7-1) ... Setting up libgnustep-base1.24 (1.24.7-1) ... Setting up gnustep-base-runtime (1.24.7-1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up gobjc-4.9 (4.9.2-10) ... Setting up gobjc (4:4.9.2-2) ... Setting up gnustep-make (2.6.6-3) ... Setting up libgnustep-base-dev (1.24.7-1) ... Setting up sbuild-build-depends-biococoa-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-17) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 173 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.24 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-17 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt7-1 Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.7 apt-utils_1.0.9.7 autotools-dev_20140911.1 base-files_8 base-passwd_3.5.37 bash_4.3-12 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-5 build-essential_11.7 bzip2_1.0.6-7+b2 ca-certificates_20141019 cdbs_0.4.129 clang-3.6_1:3.6-2 coreutils_8.23-4 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4+b1 debconf_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debian-archive-keyring_2014.3 debianutils_4.4+b1 diffutils_1:3.3-1+b1 dmsetup_2:1.02.90-2.1 dpkg_1.17.24 dpkg-dev_1.17.24 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9+b1 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.3-2 gettext-base_0.19.3-2 gnupg_1.4.18-7 gnustep-base-common_1.24.7-1 gnustep-base-runtime_1.24.7-1 gnustep-common_2.6.6-3 gnustep-make_2.6.6-3 gobjc_4:4.9.2-2 gobjc-4.9_4.9.2-10 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 initscripts_2.88dsf-58 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 less_458-3 libacl1_2.2.52-2 libapt-inst1.5_1.0.9.7 libapt-pkg4.12_1.0.9.7 libasan1_4.9.2-10 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1+b1 libavahi-client3_0.6.31-4+b2 libavahi-common-data_0.6.31-4+b2 libavahi-common3_0.6.31-4+b2 libblkid1_2.25.2-5 libbsd0_0.7.0-2 libbz2-1.0_1.0.6-7+b2 libc-bin_2.19-17 libc-dev-bin_2.19-17 libc6_2.19-17 libc6-dev_2.19-17 libcap2_1:2.24-7 libcap2-bin_1:2.24-7 libcilkrts5_4.9.2-10 libclang-common-3.6-dev_1:3.6-2 libclang1-3.6_1:3.6-2 libcloog-isl4_0.18.2-1+b2 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3+b1 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.1 libdpkg-perl_1.17.24 libedit2_3.1-20140620-2 libfakeroot_1.20.2-1 libffi6_3.1-2+b2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.42.1-1 libgmp10_2:6.0.0+dfsg-6 libgnustep-base-dev_1.24.7-1 libgnustep-base1.24_1.24.7-1 libgnutls-deb0-28_3.3.8-6 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libhogweed2_2.7.1-5 libicu52_52.1-8 libisl10_0.12.2-2 libitm1_4.9.2-10 libkmod2_20-1 libllvm3.6_1:3.6-2 liblsan0_4.9.2-10 liblzma5_5.1.1alpha+20120614-2+b3 libmagic1_1:5.22+15-2 libmount1_2.25.2-5 libmpc3_1.0.3-1 libmpfr4_3.1.2-3 libncurses5_5.9+20140913-1+b1 libncursesw5_5.9+20140913-1+b1 libnettle4_2.7.1-5 libobjc-4.9-dev_4.9.2-10 libobjc4_4.9.2-10 libp11-kit0_0.20.7-1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libprocps3_2:3.3.9-9 libquadmath0_4.9.2-10 libreadline6_6.3-8+b3 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1+b1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-5 libss2_1.42.12-1.1 libssl1.0.0_1.0.1k-3 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsystemd0_215-12 libtasn1-6_4.2-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1+b1 libtsan0_4.9.2-10 libubsan0_4.9.2-10 libudev1_215-12 libunistring0_0.9.3-5.2+b1 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3+b2 libuuid1_2.25.2-5 libxml2_2.9.2+dfsg1-3 libxslt1.1_1.1.28-2+b2 linux-libc-dev_3.16.7-ckt7-1 login_1:4.2-3 lsb-base_4.1+Debian13+nmu1 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-5 multiarch-support_2.19-17 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1+b1 nvi_1.81.6-11+b1 openssl_1.0.1k-3 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-2 perl-base_5.20.2-2 perl-modules_5.20.2-2 po-debconf_1.0.16+nmu3 procps_2:3.3.9-9 readline-common_6.3-8 sbuild-build-depends-biococoa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-4+b1 sensible-utils_0.0.9 startpar_0.59-3 sudo_1.8.12-1 systemd_215-12 systemd-sysv_215-12 sysv-rc_2.88dsf-58 sysvinit-utils_2.88dsf-58 tar_1.27.1-2+b1 tzdata_2015b-1 udev_215-12 util-linux_2.25.2-5 xz-utils_5.1.1alpha+20120614-2+b3 zlib1g_1:1.2.8.dfsg-2+b1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Nov 11 14:13:41 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./biococoa_2.2.2-2.dsc dpkg-source: info: extracting biococoa in biococoa-2.2.2 dpkg-source: info: unpacking biococoa_2.2.2.orig.tar.gz dpkg-source: info: unpacking biococoa_2.2.2-2.debian.tar.gz dpkg-source: info: applying link-libs.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-ab513e09-0539-4ba9-b97f-ba563eee7c9f SCHROOT_UID=1001 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package biococoa dpkg-buildpackage: source version 2.2.2-2 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build biococoa-2.2.2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules rm -f debian/stamp-makefile-build debian/stamp-makefile-install GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -Wl,-z,defs -Wl,--as-needed" OPTFLAG=-O2 -k clean make[1]: Entering directory '/«PKGBUILDDIR»' This is gnustep-make 2.6.6. Type 'make print-gnustep-make-help' for help. rm -rf ./*~ ./obj Making clean in subprojects of framework BioCocoa... make[2]: Entering directory '/«PKGBUILDDIR»/BCFoundation' rm -rf ./*~ ./obj Making clean in subprojects of subproject BCFoundation... make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCAlignment' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCAnalysis' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCAnalysis' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCSequence' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCSequence' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCSymbol' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCSymbol' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCTools' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCTools' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCUtils' rm -rf ./*~ ./obj make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCUtils' make[2]: Leaving directory '/«PKGBUILDDIR»/BCFoundation' Making clean for framework BioCocoa... rm -rf \ \ ./BioCocoa.framework ./derived_src make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean rm -f debian/libbiococoa2.install rm -f debian/libbiococoa-dev.install debian/rules build-arch test -x debian/rules mkdir -p "." GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -Wl,-z,defs -Wl,--as-needed" OPTFLAG=-O2 make[1]: Entering directory '/«PKGBUILDDIR»' This is gnustep-make 2.6.6. Type 'make print-gnustep-make-help' for help. Making build-headers in subprojects of framework BioCocoa... make[2]: Entering directory '/«PKGBUILDDIR»/BCFoundation' Making build-headers in subprojects of subproject BCFoundation... make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCAlignment' Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /usr/bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /usr/bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /usr/bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCAnalysis' Making build-headers for subproject BCAnalysis... /usr/bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /usr/bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCAnalysis' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' Making build-headers for subproject BCGeneExpression... /usr/bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /usr/bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /usr/bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /usr/bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' Making build-headers for subproject BCGeneticCode... /usr/bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /usr/bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /usr/bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /usr/bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' Making build-headers for subproject BCProteinStructure... /usr/bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /usr/bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /usr/bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /usr/bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /usr/bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /usr/bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCSequence' Making build-headers for subproject BCSequence... /usr/bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /usr/bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /usr/bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /usr/bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCSequence' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' Making build-headers for subproject BCSequenceIO... /usr/bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /usr/bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /usr/bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /usr/bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCSymbol' Making build-headers for subproject BCSymbol... /usr/bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /usr/bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /usr/bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /usr/bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /usr/bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /usr/bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCSymbol' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCTools' Making build-headers for subproject BCTools... /usr/bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /usr/bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /usr/bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /usr/bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /usr/bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /usr/bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /usr/bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /usr/bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /usr/bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCTools' make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCUtils' Making build-headers for subproject BCUtils... /usr/bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /usr/bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /usr/bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCUtils' Making build-headers for subproject BCFoundation... /usr/bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /usr/bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /usr/bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /usr/bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h make[2]: Leaving directory '/«PKGBUILDDIR»/BCFoundation' Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of framework BioCocoa... make[2]: Entering directory '/«PKGBUILDDIR»/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of subproject BCFoundation... make[3]: Entering directory '/«PKGBUILDDIR»/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCPairwiseAlignment.m -c \ -MMD -MP -D_FORTIFY_SOURCE=2 -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o gcc BCScoreMatrix.m -c \ -MMD -MP -D_FORTIFY_SOURCE=2 -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/BCAlignment.obj/BCScoreMatrix.m.o gcc BCSequenceAlignment.m -c \ -MMD -MP -D_FORTIFY_SOURCE=2 -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/BCAlignment.obj/BCSequenceAlignment.m.o gcc -nostdlib -r -Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -pthread -fexceptions -o ./obj/subproject.o obj/BCAlignment.obj/BCPairwiseAlignment.m.o obj/BCAlignment.obj/BCScoreMatrix.m.o obj/BCAlignment.obj/BCSequenceAlignment.m.o ; clang: warning: argument unused during compilation: '-r' clang: warning: argument unused during compilation: '-pthread' /usr/bin/ld: warning: cannot find entry symbol _start; defaulting to 00000000004001c0 obj/BCAlignment.obj/BCPairwiseAlignment.m.o: In function `_c_BCSequenceAlignment_PairwiseAlignment_needlemanWunschAlignmentWithSequences_properties_': BCPairwiseAlignment.m:(.text+0x17): undefined reference to `BCSubstitutionMatrixProperty' BCPairwiseAlignment.m:(.text+0x2c): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x4e): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x6b): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x90): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0xad): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCPairwiseAlignment.m.o:BCPairwiseAlignment.m:(.text+0xc5): more undefined references to `objc_msg_lookup' follow obj/BCAlignment.obj/BCPairwiseAlignment.m.o: In function `_c_BCSequenceAlignment_PairwiseAlignment_needlemanWunschAlignmentWithSequences_properties_': BCPairwiseAlignment.m:(.text+0xef): undefined reference to `BCDefaultGapPenaltyProperty' BCPairwiseAlignment.m:(.text+0x104): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x124): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x147): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x160): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x184): undefined reference to `malloc' BCPairwiseAlignment.m:(.text+0x194): undefined reference to `malloc' BCPairwiseAlignment.m:(.text+0x1c3): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x2c0): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x396): undefined reference to `malloc' BCPairwiseAlignment.m:(.text+0x3a1): undefined reference to `malloc' BCPairwiseAlignment.m:(.text+0x45b): undefined reference to `malloc' BCPairwiseAlignment.m:(.text+0x466): undefined reference to `malloc' BCPairwiseAlignment.m:(.text+0x740): undefined reference to `objc_lookup_class' BCPairwiseAlignment.m:(.text+0x751): undefined reference to `objc_lookup_class' BCPairwiseAlignment.m:(.text+0x766): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x78e): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x7ac): undefined reference to `objc_lookup_class' BCPairwiseAlignment.m:(.text+0x7bd): undefined reference to `objc_lookup_class' BCPairwiseAlignment.m:(.text+0x7cb): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x7e7): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x803): undefined reference to `objc_lookup_class' BCPairwiseAlignment.m:(.text+0x818): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x831): undefined reference to `objc_lookup_class' BCPairwiseAlignment.m:(.text+0x846): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x873): undefined reference to `objc_msg_lookup' BCPairwiseAlignment.m:(.text+0x893): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCPairwiseAlignment.m.o: In function `.objc_load_function': BCPairwiseAlignment.m:(.text+0x8da): undefined reference to `__objc_exec_class' obj/BCAlignment.obj/BCPairwiseAlignment.m.o:(.data.rel.ro.__objc_class_ref_BCSequence[__objc_class_ref_BCSequence]+0x0): undefined reference to `__objc_class_name_BCSequence' obj/BCAlignment.obj/BCPairwiseAlignment.m.o:(.data.rel.ro.__objc_class_ref_NSString[__objc_class_ref_NSString]+0x0): undefined reference to `__objc_class_name_NSString' obj/BCAlignment.obj/BCPairwiseAlignment.m.o:(.data.rel.ro.__objc_class_ref_NSArray[__objc_class_ref_NSArray]+0x0): undefined reference to `__objc_class_name_NSArray' obj/BCAlignment.obj/BCScoreMatrix.m.o: In function `_i_BCScoreMatrix__initWithSymbolSet_matrix_': BCScoreMatrix.m:(.text+0x39): undefined reference to `objc_msg_lookup_super' BCScoreMatrix.m:(.text+0x5b): undefined reference to `objc_msg_lookup' BCScoreMatrix.m:(.text+0x7c): undefined reference to `objc_msg_lookup' BCScoreMatrix.m:(.text+0x92): undefined reference to `malloc' BCScoreMatrix.m:(.text+0xa6): undefined reference to `memcpy' obj/BCAlignment.obj/BCScoreMatrix.m.o: In function `_i_BCScoreMatrix__containsSymbol_': BCScoreMatrix.m:(.text+0xda): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCScoreMatrix.m.o: In function `_i_BCScoreMatrix__substituteSymbol_forSymbol_': BCScoreMatrix.m:(.text+0x10c): undefined reference to `objc_msg_lookup' BCScoreMatrix.m:(.text+0x12d): undefined reference to `objc_msg_lookup' BCScoreMatrix.m:(.text+0x14a): undefined reference to `objc_msg_lookup' BCScoreMatrix.m:(.text+0x160): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCScoreMatrix.m.o:BCScoreMatrix.m:(.text+0x17d): more undefined references to `objc_msg_lookup' follow obj/BCAlignment.obj/BCScoreMatrix.m.o: In function `_i_BCScoreMatrix__dealloc': BCScoreMatrix.m:(.text+0x1fd): undefined reference to `objc_msg_lookup_super' obj/BCAlignment.obj/BCScoreMatrix.m.o: In function `.objc_load_function': BCScoreMatrix.m:(.text+0x22a): undefined reference to `__objc_exec_class' obj/BCAlignment.obj/BCScoreMatrix.m.o:(.data.rel.ro.__objc_class_ref_NSObject[__objc_class_ref_NSObject]+0x0): undefined reference to `__objc_class_name_NSObject' obj/BCAlignment.obj/BCSequenceAlignment.m.o: In function `_i_BCSequenceAlignment__initWithSequenceArray_': BCSequenceAlignment.m:(.text+0x32): undefined reference to `objc_msg_lookup_super' BCSequenceAlignment.m:(.text+0x54): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCSequenceAlignment.m.o: In function `_i_BCSequenceAlignment__dealloc': BCSequenceAlignment.m:(.text+0x9e): undefined reference to `objc_msg_lookup' BCSequenceAlignment.m:(.text+0xcd): undefined reference to `objc_msg_lookup_super' obj/BCAlignment.obj/BCSequenceAlignment.m.o: In function `_i_BCSequenceAlignment_AlignmentQuerying_sequenceAtIndex_': BCSequenceAlignment.m:(.text+0x10a): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCSequenceAlignment.m.o: In function `_i_BCSequenceAlignment_AlignmentQuerying_length': BCSequenceAlignment.m:(.text+0x153): undefined reference to `objc_msg_lookup' BCSequenceAlignment.m:(.text+0x172): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCSequenceAlignment.m.o: In function `_i_BCSequenceAlignment_AlignmentQuerying_sequenceCount': BCSequenceAlignment.m:(.text+0x1a6): undefined reference to `objc_msg_lookup' obj/BCAlignment.obj/BCSequenceAlignment.m.o: In function `.objc_load_function': BCSequenceAlignment.m:(.text+0x1da): undefined reference to `__objc_exec_class' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[5]: *** [obj/subproject.o] Error 1 /usr/share/GNUstep/Makefiles/Instance/subproject.make:61: recipe for target 'obj/subproject.o' failed make[4]: *** [internal-subproject-all_] Error 2 /usr/share/GNUstep/Makefiles/Instance/subproject.make:45: recipe for target 'internal-subproject-all_' failed make[3]: *** [BCAlignment.all.subproject.variables] Error 2 /usr/share/GNUstep/Makefiles/Master/rules.make:298: recipe for target 'BCAlignment.all.subproject.variables' failed make[3]: Leaving directory '/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[2]: *** [BCFoundation.all.subproject.variables] Error 2 /usr/share/GNUstep/Makefiles/Master/rules.make:298: recipe for target 'BCFoundation.all.subproject.variables' failed make[2]: Leaving directory '/«PKGBUILDDIR»/BCFoundation' make[1]: *** [BioCocoa.all.framework.variables] Error 2 /usr/share/GNUstep/Makefiles/Master/rules.make:298: recipe for target 'BioCocoa.all.framework.variables' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [debian/stamp-makefile-build] Error 2 /usr/share/cdbs/1/class/makefile.mk:47: recipe for target 'debian/stamp-makefile-build' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150326-0826 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 2544 Build-Time: 4 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 19 Job: biococoa_2.2.2-2 Machine Architecture: amd64 Package: biococoa Package-Time: 49 Source-Version: 2.2.2-2 Space: 2544 Status: attempted Version: 2.2.2-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150326-0826 Build needed 00:00:49, 2544k disc space DC-Status: Failed 49.77574889s DC-Time-Estimation: 49.77574889 versus expected 212 (r/m: 3.259102167774537 ; m: 49.77574889)