DC-Build-Header: minc 2.2.00-6 / 2015-03-26 07:48:38 +0000 DC-Task: source:minc version:2.2.00-6 architecture:any chroot:unstable esttime:775 logfile:/tmp/minc_2.2.00-6_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang minc_2.2.00-6' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-8-109.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ minc 2.2.00-6 (amd64) 26 Mar 2015 07:48 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: minc Version: 2.2.00-6 Source Version: 2.2.00-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/minc-mmR3J0/minc-2.2.00' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/minc-mmR3J0' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-2741c289-4444-47db-a9a4-c5dedb18a846' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [257 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2015-03-25-1448.37.pdiff [3021 B] Get:6 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [5545 B] Get:7 http://localhost:9999 unstable/main 2015-03-26-0248.39.pdiff [3389 B] Get:8 http://localhost:9999 unstable/main 2015-03-26-0248.39.pdiff [3389 B] Get:9 http://localhost:9999 unstable/main amd64 2015-03-25-1448.37.pdiff [4095 B] Get:10 http://localhost:9999 unstable/main amd64 2015-03-25-2049.47.pdiff [4595 B] Get:11 http://localhost:9999 unstable/main amd64 2015-03-26-0248.39.pdiff [3173 B] Get:12 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Get:13 http://localhost:9999 unstable/main amd64 2015-03-26-0248.39.pdiff [3173 B] Get:14 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Fetched 306 kB in 5s (57.1 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'minc' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/minc/trunk/ Need to get 1676 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main minc 2.2.00-6 (dsc) [2173 B] Get:2 http://localhost:9999/debian/ unstable/main minc 2.2.00-6 (tar) [1665 kB] Get:3 http://localhost:9999/debian/ unstable/main minc 2.2.00-6 (diff) [8548 B] Fetched 1676 kB in 0s (5966 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/clang ────────── + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.6 + echo 'Install of clang-3.6' Install of clang-3.6 + apt-get update Hit http://localhost:9999 unstable InRelease Get:1 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:2 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Fetched 23.6 kB in 2s (11.4 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.6 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.6-doc Recommended packages: llvm-3.6-dev python The following NEW packages will be installed: clang-3.6 libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.1-2+b2 [20.1 kB] Get:4 http://localhost:9999/debian/ unstable/main libllvm3.6 amd64 1:3.6-2 [8137 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.9.2-10 [112 kB] Get:6 http://localhost:9999/debian/ unstable/main libobjc-4.9-dev amd64 4.9.2-10 [372 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.6 amd64 1:3.6-2 [3839 kB] Get:8 http://localhost:9999/debian/ unstable/main libclang-common-3.6-dev amd64 1:3.6-2 [706 kB] Get:9 http://localhost:9999/debian/ unstable/main clang-3.6 amd64 1:3.6-2 [25.8 MB] debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 39.2 MB in 1s (35.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11980 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+b2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+b2) ... Selecting previously unselected package libllvm3.6:amd64. Preparing to unpack .../libllvm3.6_1%3a3.6-2_amd64.deb ... Unpacking libllvm3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.2-10_amd64.deb ... Unpacking libobjc4:amd64 (4.9.2-10) ... Selecting previously unselected package libobjc-4.9-dev:amd64. Preparing to unpack .../libobjc-4.9-dev_4.9.2-10_amd64.deb ... Unpacking libobjc-4.9-dev:amd64 (4.9.2-10) ... Selecting previously unselected package libclang1-3.6:amd64. Preparing to unpack .../libclang1-3.6_1%3a3.6-2_amd64.deb ... Unpacking libclang1-3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libclang-common-3.6-dev. Preparing to unpack .../libclang-common-3.6-dev_1%3a3.6-2_amd64.deb ... Unpacking libclang-common-3.6-dev (1:3.6-2) ... Selecting previously unselected package clang-3.6. Preparing to unpack .../clang-3.6_1%3a3.6-2_amd64.deb ... Unpacking clang-3.6 (1:3.6-2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libffi6:amd64 (3.1-2+b2) ... Setting up libllvm3.6:amd64 (1:3.6-2) ... Setting up libobjc4:amd64 (4.9.2-10) ... Setting up libobjc-4.9-dev:amd64 (4.9.2-10) ... Setting up libclang1-3.6:amd64 (1:3.6-2) ... Setting up libclang-common-3.6-dev (1:3.6-2) ... Setting up clang-3.6 (1:3.6-2) ... Processing triggers for libc-bin (2.19-17) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.6 g++-4.6 + ln -s clang-3.6 gcc-4.6 + ln -s clang-3.6 cpp-4.6 + ln -s clang-3.6 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.6 g++-4.7 + ln -s clang-3.6 gcc-4.7 + ln -s clang-3.6 cpp-4.7 + ln -s clang-3.6 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.6 g++-4.8 + ln -s clang-3.6 gcc-4.8 + ln -s clang-3.6 cpp-4.8 + ln -s clang-3.6 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.6 g++-4.9 + ln -s clang-3.6 gcc-4.9 + ln -s clang-3.6 cpp-4.9 + ln -s clang-3.6 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections + echo 'g++-4.9 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.6 g++-5 + ln -s clang-3.6 gcc-5 + ln -s clang-3.6 cpp-5 + ln -s clang-3.6 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + cd - /«BUILDDIR» + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-zcBzfj/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/816 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev, dh-autoreconf, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev, dh-autoreconf, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev dpkg-deb: building package `sbuild-build-depends-minc-dummy' in `/«BUILDDIR»/resolver-uyg_bp/apt_archive/sbuild-build-depends-minc-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install minc build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base hdf5-helpers intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcf0 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhdf5-8 libhdf5-cpp-8 libhdf5-dev libhogweed2 libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libmagic1 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnettle4 libopenjpeg5 libp11-kit0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng12-0 libpoppler46 libpotrace0 libptexenc1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libsynctex1 libtasn1-6 libtiff5 libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxt6 libzzip-0-13 m4 man-db po-debconf poppler-data tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff cups-common gnutls-bin krb5-doc krb5-user libhdf5-doc libjasper-runtime liblcms2-utils netcdf-bin netcdf-doc libtool-doc automaken gfortran fortran95-compiler gcj-jdk www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum perl-tk gv postscript-viewer xpdf-reader pdf-viewer gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev ca-certificates dbus libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid krb5-locales pkg-config libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl lmodern python ruby wish texlive-latex-base-doc libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base hdf5-helpers intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcf0 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhdf5-8 libhdf5-cpp-8 libhdf5-dev libhogweed2 libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libmagic1 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnettle4 libopenjpeg5 libp11-kit0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng12-0 libpoppler46 libpotrace0 libptexenc1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libsynctex1 libtasn1-6 libtiff5 libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxt6 libzzip-0-13 m4 man-db po-debconf poppler-data sbuild-build-depends-minc-dummy tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 68.5 MB/68.5 MB of archives. After this operation, 247 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.4.0-1 [27.9 kB] Get:2 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.3-1 [1205 kB] Get:3 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.6 [183 kB] Get:4 http://localhost:9999/debian/ unstable/main man-db amd64 2.7.0.2-5 [1000 kB] Get:5 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.19.3-2 [31.3 kB] Get:6 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-5 [176 kB] Get:7 http://localhost:9999/debian/ unstable/main libhogweed2 amd64 2.7.1-5 [125 kB] Get:8 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:9 http://localhost:9999/debian/ unstable/main libtasn1-6 amd64 4.2-2 [48.6 kB] Get:10 http://localhost:9999/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.8-6 [694 kB] Get:11 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:12 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.12.1+dfsg-19 [58.5 kB] Get:13 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.12.1+dfsg-19 [115 kB] Get:14 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.12.1+dfsg-19 [303 kB] Get:15 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19 [150 kB] Get:16 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.29-1+b2 [136 kB] Get:17 http://localhost:9999/debian/ unstable/main libsasl2-modules-db amd64 2.1.26.dfsg1-13 [67.0 kB] Get:18 http://localhost:9999/debian/ unstable/main libsasl2-2 amd64 2.1.26.dfsg1-13 [104 kB] Get:19 http://localhost:9999/debian/ unstable/main libldap-2.4-2 amd64 2.4.40-4 [217 kB] Get:20 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.22+15-2 [249 kB] Get:21 http://localhost:9999/debian/ unstable/main libicu52 amd64 52.1-8 [6780 kB] Get:22 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.2+dfsg1-3 [934 kB] Get:23 http://localhost:9999/debian/ unstable/main libavahi-common-data amd64 0.6.31-4+b2 [98.7 kB] Get:24 http://localhost:9999/debian/ unstable/main libavahi-common3 amd64 0.6.31-4+b2 [51.2 kB] Get:25 http://localhost:9999/debian/ unstable/main libdbus-1-3 amd64 1.8.16-1 [169 kB] Get:26 http://localhost:9999/debian/ unstable/main libavahi-client3 amd64 0.6.31-4+b2 [54.5 kB] Get:27 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.42.1-1 [2401 kB] Get:28 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:29 http://localhost:9999/debian/ unstable/main libcups2 amd64 1.7.5-11 [283 kB] Get:30 http://localhost:9999/debian/ unstable/main libcupsimage2 amd64 1.7.5-11 [116 kB] Get:31 http://localhost:9999/debian/ unstable/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:32 http://localhost:9999/debian/ unstable/main libpng12-0 amd64 1.2.50-2+b2 [172 kB] Get:33 http://localhost:9999/debian/ unstable/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:34 http://localhost:9999/debian/ unstable/main libtiff5 amd64 4.0.3-12.3 [217 kB] Get:35 http://localhost:9999/debian/ unstable/main libcupsfilters1 amd64 1.0.61-5 [106 kB] Get:36 http://localhost:9999/debian/ unstable/main librtmp1 amd64 2.4+20131018.git79459a2-5 [59.6 kB] Get:37 http://localhost:9999/debian/ unstable/main libssh2-1 amd64 1.4.3-4.1 [125 kB] Get:38 http://localhost:9999/debian/ unstable/main libcurl3-gnutls amd64 7.38.0-4 [251 kB] Get:39 http://localhost:9999/debian/ unstable/main libexpat1 amd64 2.1.0-6+b3 [80.3 kB] Get:40 http://localhost:9999/debian/ unstable/main libfreetype6 amd64 2.5.2-4 [466 kB] Get:41 http://localhost:9999/debian/ unstable/main ucf all 3.0030 [69.7 kB] Get:42 http://localhost:9999/debian/ unstable/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:43 http://localhost:9999/debian/ unstable/main fontconfig-config all 2.11.0-6.3 [273 kB] Get:44 http://localhost:9999/debian/ unstable/main libfontconfig1 amd64 2.11.0-6.3 [329 kB] Get:45 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.9.2-10 [255 kB] Get:46 http://localhost:9999/debian/ unstable/main libgraphite2-3 amd64 1.2.4-3 [57.4 kB] Get:47 http://localhost:9999/debian/ unstable/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:48 http://localhost:9999/debian/ unstable/main libharfbuzz-icu0 amd64 0.9.35-2 [360 kB] Get:49 http://localhost:9999/debian/ unstable/main libhdf5-8 amd64 1.8.13+docs-15 [1060 kB] Get:50 http://localhost:9999/debian/ unstable/main x11-common all 1:7.7+7 [287 kB] Get:51 http://localhost:9999/debian/ unstable/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:52 http://localhost:9999/debian/ unstable/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:53 http://localhost:9999/debian/ unstable/main libjasper1 amd64 1.900.1-debian1-2.4 [133 kB] Get:54 http://localhost:9999/debian/ unstable/main liblcms2-2 amd64 2.6-3+b3 [141 kB] Get:55 http://localhost:9999/debian/ unstable/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:56 http://localhost:9999/debian/ unstable/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:57 http://localhost:9999/debian/ unstable/main libopenjpeg5 amd64 1:1.5.2-3 [111 kB] Get:58 http://localhost:9999/debian/ unstable/main libpoppler46 amd64 0.26.5-2 [1210 kB] Get:59 http://localhost:9999/debian/ unstable/main libsigsegv2 amd64 2.10-4+b1 [29.2 kB] Get:60 http://localhost:9999/debian/ unstable/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:61 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:62 http://localhost:9999/debian/ unstable/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:63 http://localhost:9999/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:64 http://localhost:9999/debian/ unstable/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:65 http://localhost:9999/debian/ unstable/main libx11-data all 2:1.6.2-3 [126 kB] Get:66 http://localhost:9999/debian/ unstable/main libx11-6 amd64 2:1.6.2-3 [729 kB] Get:67 http://localhost:9999/debian/ unstable/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:68 http://localhost:9999/debian/ unstable/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:69 http://localhost:9999/debian/ unstable/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:70 http://localhost:9999/debian/ unstable/main libxpm4 amd64 1:3.5.11-1+b1 [48.1 kB] Get:71 http://localhost:9999/debian/ unstable/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:72 http://localhost:9999/debian/ unstable/main libxi6 amd64 2:1.7.4-1+b2 [79.7 kB] Get:73 http://localhost:9999/debian/ unstable/main libzzip-0-13 amd64 0.13.62-3 [55.5 kB] Get:74 http://localhost:9999/debian/ unstable/main poppler-data all 0.4.7-1 [1491 kB] Get:75 http://localhost:9999/debian/ unstable/main file amd64 1:5.22+15-2 [60.1 kB] Get:76 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.19.3-2 [121 kB] Get:77 http://localhost:9999/debian/ unstable/main m4 amd64 1.4.17-4 [254 kB] Get:78 http://localhost:9999/debian/ unstable/main autoconf all 2.69-8 [340 kB] Get:79 http://localhost:9999/debian/ unstable/main autotools-dev all 20140911.1 [70.5 kB] Get:80 http://localhost:9999/debian/ unstable/main automake all 1:1.14.1-4 [725 kB] Get:81 http://localhost:9999/debian/ unstable/main autopoint all 0.19.3-2 [413 kB] Get:82 http://localhost:9999/debian/ unstable/main gettext amd64 0.19.3-2 [1240 kB] Get:83 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:84 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu3 [220 kB] Get:85 http://localhost:9999/debian/ unstable/main debhelper all 9.20150101 [813 kB] Get:86 http://localhost:9999/debian/ unstable/main libtool all 2.4.2-1.11 [190 kB] Get:87 http://localhost:9999/debian/ unstable/main dh-autoreconf all 10 [15.2 kB] Get:88 http://localhost:9999/debian/ unstable/main hdf5-helpers amd64 1.8.13+docs-15 [36.5 kB] Get:89 http://localhost:9999/debian/ unstable/main libcf0 amd64 1:4.1.3-7.2 [45.8 kB] Get:90 http://localhost:9999/debian/ unstable/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:91 http://localhost:9999/debian/ unstable/main libgs9-common all 9.06~dfsg-2 [1979 kB] Get:92 http://localhost:9999/debian/ unstable/main libgs9 amd64 9.06~dfsg-2 [1914 kB] Get:93 http://localhost:9999/debian/ unstable/main libhdf5-cpp-8 amd64 1.8.13+docs-15 [121 kB] Get:94 http://localhost:9999/debian/ unstable/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:95 http://localhost:9999/debian/ unstable/main libjpeg62-turbo-dev amd64 1:1.3.1-12 [455 kB] Get:96 http://localhost:9999/debian/ unstable/main libjpeg-dev all 1:1.3.1-12 [49.3 kB] Get:97 http://localhost:9999/debian/ unstable/main libhdf5-dev amd64 1.8.13+docs-15 [4364 kB] Get:98 http://localhost:9999/debian/ unstable/main libkpathsea6 amd64 2014.20140926.35254-6 [154 kB] Get:99 http://localhost:9999/debian/ unstable/main libnetcdfc7 amd64 1:4.1.3-7.2 [276 kB] Get:100 http://localhost:9999/debian/ unstable/main libnetcdff5 amd64 1:4.1.3-7.2 [102 kB] Get:101 http://localhost:9999/debian/ unstable/main libnetcdfc++4 amd64 1:4.1.3-7.2 [54.2 kB] Get:102 http://localhost:9999/debian/ unstable/main libnetcdf-dev amd64 1:4.1.3-7.2 [471 kB] Get:103 http://localhost:9999/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:104 http://localhost:9999/debian/ unstable/main libpotrace0 amd64 1.11-2 [24.4 kB] Get:105 http://localhost:9999/debian/ unstable/main libptexenc1 amd64 2014.20140926.35254-6 [54.1 kB] Get:106 http://localhost:9999/debian/ unstable/main libsynctex1 amd64 2014.20140926.35254-6 [61.1 kB] Get:107 http://localhost:9999/debian/ unstable/main tex-common all 5.03 [625 kB] Get:108 http://localhost:9999/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB] Get:109 http://localhost:9999/debian/ unstable/main texlive-binaries amd64 2014.20140926.35254-6 [6782 kB] Get:110 http://localhost:9999/debian/ unstable/main texlive-base all 2014.20141024-2 [17.7 MB] Get:111 http://localhost:9999/debian/ unstable/main texlive-latex-base all 2014.20141024-2 [858 kB] Extracting templates from packages: 26% Extracting templates from packages: 53% Extracting templates from packages: 80% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 68.5 MB in 3s (19.5 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.4.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.0-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_amd64.deb ... Unpacking groff-base (1.22.3-1) ... 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Preparing to unpack .../texlive-latex-base_2014.20141024-2_all.deb ... Unpacking texlive-latex-base (2014.20141024-2) ... Selecting previously unselected package sbuild-build-depends-minc-dummy. Preparing to unpack .../sbuild-build-depends-minc-dummy.deb ... Unpacking sbuild-build-depends-minc-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.4.0-1) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.19.3-2) ... Setting up libnettle4:amd64 (2.7.1-5) ... Setting up libhogweed2:amd64 (2.7.1-5) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19) ... Setting up libidn11:amd64 (1.29-1+b2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13) ... Setting up libldap-2.4-2:amd64 (2.4.40-4) ... Setting up libmagic1:amd64 (1:5.22+15-2) ... Setting up libicu52:amd64 (52.1-8) ... Setting up libxml2:amd64 (2.9.2+dfsg1-3) ... Setting up libavahi-common-data:amd64 (0.6.31-4+b2) ... Setting up libavahi-common3:amd64 (0.6.31-4+b2) ... Setting up libdbus-1-3:amd64 (1.8.16-1) ... Setting up libavahi-client3:amd64 (0.6.31-4+b2) ... Setting up libglib2.0-0:amd64 (2.42.1-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3+b1) ... Setting up libcups2:amd64 (1.7.5-11) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libpng12-0:amd64 (1.2.50-2+b2) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3) ... Setting up librtmp1:amd64 (2.4+20131018.git79459a2-5) ... Setting up libssh2-1:amd64 (1.4.3-4.1) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4) ... Setting up libexpat1:amd64 (2.1.0-6+b3) ... Setting up libfreetype6:amd64 (2.5.2-4) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3) ... Setting up libfontconfig1:amd64 (2.11.0-6.3) ... Setting up libgfortran3:amd64 (4.9.2-10) ... Setting up libgraphite2-3:amd64 (1.2.4-3) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libharfbuzz-icu0:amd64 (0.9.35-2) ... Setting up libhdf5-8:amd64 (1.8.13+docs-15) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4) ... Setting up liblcms2-2:amd64 (2.6-3+b3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libopenjpeg5:amd64 (1:1.5.2-3) ... Setting up libpoppler46:amd64 (0.26.5-2) ... Setting up libsigsegv2:amd64 (2.10-4+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3) ... Setting up libx11-6:amd64 (2:1.6.2-3) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxpm4:amd64 (1:3.5.11-1+b1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxi6:amd64 (2:1.7.4-1+b2) ... Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up poppler-data (0.4.7-1) ... Setting up file (1:5.22+15-2) ... Setting up gettext-base (0.19.3-2) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.14.1-4) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.3-2) ... Setting up gettext (0.19.3-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up debhelper (9.20150101) ... Setting up libtool (2.4.2-1.11) ... Setting up dh-autoreconf (10) ... Setting up hdf5-helpers (1.8.13+docs-15) ... Setting up libcf0 (1:4.1.3-7.2) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.06~dfsg-2) ... Setting up libhdf5-cpp-8:amd64 (1.8.13+docs-15) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ... Setting up libjpeg-dev (1:1.3.1-12) ... Setting up libhdf5-dev (1.8.13+docs-15) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libkpathsea6 (2014.20140926.35254-6) ... Setting up libnetcdfc7 (1:4.1.3-7.2) ... Setting up libnetcdff5 (1:4.1.3-7.2) ... Setting up libnetcdfc++4 (1:4.1.3-7.2) ... Setting up libnetcdf-dev (1:4.1.3-7.2) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpotrace0 (1.11-2) ... Setting up libptexenc1 (2014.20140926.35254-6) ... Setting up libsynctex1 (2014.20140926.35254-6) ... Setting up tex-common (5.03) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ... Setting up libcupsimage2:amd64 (1.7.5-11) ... Setting up libcupsfilters1:amd64 (1.0.61-5) ... Setting up libgs9 (9.06~dfsg-2) ... Setting up texlive-binaries (2014.20140926.35254-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2014.20141024-2) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2014.20141024-2) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-minc-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-17) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.24 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-17 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt7-1 Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.7 apt-utils_1.0.9.7 autoconf_2.69-8 automake_1:1.14.1-4 autopoint_0.19.3-2 autotools-dev_20140911.1 base-files_8 base-passwd_3.5.37 bash_4.3-12 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-5 build-essential_11.7 bzip2_1.0.6-7+b2 clang-3.6_1:3.6-2 coreutils_8.23-4 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4+b1 debconf_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debian-archive-keyring_2014.3 debianutils_4.4+b1 dh-autoreconf_10 diffutils_1:3.3-1+b1 dmsetup_2:1.02.90-2.1 dpkg_1.17.24 dpkg-dev_1.17.24 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9+b1 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.34-1 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.3-2 gettext-base_0.19.3-2 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hdf5-helpers_1.8.13+docs-15 hostname_3.15 init_1.22 initscripts_2.88dsf-58 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 less_458-3 libacl1_2.2.52-2 libapt-inst1.5_1.0.9.7 libapt-pkg4.12_1.0.9.7 libasan1_4.9.2-10 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1+b1 libavahi-client3_0.6.31-4+b2 libavahi-common-data_0.6.31-4+b2 libavahi-common3_0.6.31-4+b2 libblkid1_2.25.2-5 libbsd0_0.7.0-2 libbz2-1.0_1.0.6-7+b2 libc-bin_2.19-17 libc-dev-bin_2.19-17 libc6_2.19-17 libc6-dev_2.19-17 libcap2_1:2.24-7 libcap2-bin_1:2.24-7 libcf0_1:4.1.3-7.2 libcilkrts5_4.9.2-10 libclang-common-3.6-dev_1:3.6-2 libclang1-3.6_1:3.6-2 libcloog-isl4_0.18.2-1+b2 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3+b1 libcryptsetup4_2:1.6.6-5 libcups2_1.7.5-11 libcupsfilters1_1.0.61-5 libcupsimage2_1.7.5-11 libcurl3-gnutls_7.38.0-4 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.1 libdpkg-perl_1.17.24 libedit2_3.1-20140620-2 libexpat1_2.1.0-6+b3 libfakeroot_1.20.2-1 libffi6_3.1-2+b2 libfontconfig1_2.11.0-6.3 libfreetype6_2.5.2-4 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_4.9.2-10 libglib2.0-0_2.42.1-1 libgmp10_2:6.0.0+dfsg-6 libgnutls-deb0-28_3.3.8-6 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libgraphite2-3_1.2.4-3 libgs9_9.06~dfsg-2 libgs9-common_9.06~dfsg-2 libgssapi-krb5-2_1.12.1+dfsg-19 libharfbuzz-icu0_0.9.35-2 libharfbuzz0b_0.9.35-2 libhdf5-8_1.8.13+docs-15 libhdf5-cpp-8_1.8.13+docs-15 libhdf5-dev_1.8.13+docs-15 libhogweed2_2.7.1-5 libice6_2:1.0.9-1+b1 libicu52_52.1-8 libidn11_1.29-1+b2 libijs-0.35_0.35-10 libisl10_0.12.2-2 libitm1_4.9.2-10 libjasper1_1.900.1-debian1-2.4 libjbig0_2.1-3.1 libjbig2dec0_0.11+20120125-1 libjpeg-dev_1:1.3.1-12 libjpeg62-turbo_1:1.3.1-12 libjpeg62-turbo-dev_1:1.3.1-12 libk5crypto3_1.12.1+dfsg-19 libkeyutils1_1.5.9-5+b1 libkmod2_20-1 libkpathsea6_2014.20140926.35254-6 libkrb5-3_1.12.1+dfsg-19 libkrb5support0_1.12.1+dfsg-19 liblcms2-2_2.6-3+b3 libldap-2.4-2_2.4.40-4 libllvm3.6_1:3.6-2 liblsan0_4.9.2-10 liblzma5_5.1.1alpha+20120614-2+b3 libmagic1_1:5.22+15-2 libmount1_2.25.2-5 libmpc3_1.0.3-1 libmpfr4_3.1.2-3 libncurses5_5.9+20140913-1+b1 libncursesw5_5.9+20140913-1+b1 libnetcdf-dev_1:4.1.3-7.2 libnetcdfc++4_1:4.1.3-7.2 libnetcdfc7_1:4.1.3-7.2 libnetcdff5_1:4.1.3-7.2 libnettle4_2.7.1-5 libobjc-4.9-dev_4.9.2-10 libobjc4_4.9.2-10 libopenjpeg5_1:1.5.2-3 libp11-kit0_0.20.7-1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.50-2+b2 libpoppler46_0.26.5-2 libpotrace0_1.11-2 libprocps3_2:3.3.9-9 libptexenc1_2014.20140926.35254-6 libquadmath0_4.9.2-10 libreadline6_6.3-8+b3 librtmp1_2.4+20131018.git79459a2-5 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1+b1 libsepol1_2.3-2 libsigsegv2_2.10-4+b1 libslang2_2.3.0-2 libsm6_2:1.2.2-1+b1 libsmartcols1_2.25.2-5 libss2_1.42.12-1.1 libssh2-1_1.4.3-4.1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsynctex1_2014.20140926.35254-6 libsystemd0_215-12 libtasn1-6_4.2-2 libtiff5_4.0.3-12.3 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1+b1 libtool_2.4.2-1.11 libtsan0_4.9.2-10 libubsan0_4.9.2-10 libudev1_215-12 libunistring0_0.9.3-5.2+b1 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3+b2 libuuid1_2.25.2-5 libx11-6_2:1.6.2-3 libx11-data_2:1.6.2-3 libxau6_1:1.0.8-1 libxaw7_2:1.0.12-2+b1 libxcb1_1.10-3+b1 libxdmcp6_1:1.1.1-1+b1 libxext6_2:1.3.3-1 libxi6_2:1.7.4-1+b2 libxml2_2.9.2+dfsg1-3 libxmu6_2:1.1.2-1 libxpm4_1:3.5.11-1+b1 libxt6_1:1.1.4-1+b1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.16.7-ckt7-1 login_1:4.2-3 lsb-base_4.1+Debian13+nmu1 m4_1.4.17-4 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-5 multiarch-support_2.19-17 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1+b1 nvi_1.81.6-11+b1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-2 perl-base_5.20.2-2 perl-modules_5.20.2-2 po-debconf_1.0.16+nmu3 poppler-data_0.4.7-1 procps_2:3.3.9-9 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-minc-dummy_0.invalid.0 sed_4.2.2-4+b1 sensible-utils_0.0.9 startpar_0.59-3 sudo_1.8.12-1 systemd_215-12 systemd-sysv_215-12 sysv-rc_2.88dsf-58 sysvinit-utils_2.88dsf-58 tar_1.27.1-2+b1 tex-common_5.03 texlive-base_2014.20141024-2 texlive-binaries_2014.20140926.35254-6 texlive-latex-base_2014.20141024-2 tzdata_2015b-1 ucf_3.0030 udev_215-12 util-linux_2.25.2-5 x11-common_1:7.7+7 xdg-utils_1.1.0~rc1+git20111210-7.4 xz-utils_5.1.1alpha+20120614-2+b3 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Oct 6 08:01:35 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./minc_2.2.00-6.dsc dpkg-source: info: extracting minc in minc-2.2.00 dpkg-source: info: unpacking minc_2.2.00.orig.tar.gz dpkg-source: info: unpacking minc_2.2.00-6.debian.tar.xz dpkg-source: info: applying maxpathlen.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying acrnema-version.patch dpkg-source: info: applying pod_fix.diff dpkg-source: info: applying clang.patch dpkg-source: info: applying fix-crash-filename-null-voxel-loop.patch dpkg-source: info: applying fix-crash-filename-null.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-2741c289-4444-47db-a9a4-c5dedb18a846 SCHROOT_UID=1001 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package minc dpkg-buildpackage: source version 2.2.00-6 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build minc-2.2.00 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf --with autotools_dev dh_testdir dh_auto_clean dh_autoreconf_clean dh_autotools-dev_restoreconfig dh_clean debian/rules build-arch dh build-arch --with autoreconf --with autotools_dev dh_testdir -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:29: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.in:29: the top level configure.in:29: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.in:29: the top level configure.in:29: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.in:29: the top level configure.in:29: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.in:29: the top level libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `ac_config_aux'. libtoolize: copying file `ac_config_aux/ltmain.sh' libtoolize: putting macros in `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.in and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' Makefile.am:24: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' libsrc2/test/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing 'ac_config_aux/test-driver' testdir/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') volume_io/Testing/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_autotools-dev_updateconfig -a debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure -- --enable-shared --enable-minc2 --enable-acr-nema CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" configure: WARNING: unrecognized options: --disable-maintainer-mode, --enable-minc2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking whether time.h and sys/time.h may both be included... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/stat.h... (cached) yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking values.h usability... yes checking values.h presence... yes checking for values.h... yes checking for int32_t... yes checking for int16_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for pod2man... /usr/bin/pod2man checking for library m... yes checking for library netcdf... yes checking for library z... yes checking for library hdf5... yes checking for strdup... yes checking for mkstemp... yes checking for tempnam... yes checking for tmpnam... yes checking for getpwnam... yes checking for select... yes checking for strerror... yes checking for sysconf... yes checking for pid_t... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for system... yes checking for popen... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating epm-header config.status: creating doc/Makefile config.status: creating testdir/Makefile config.status: creating libsrc2/test/Makefile config.status: creating volume_io/Makefile config.status: creating volume_io/Documentation/Makefile config.status: creating volume_io/Testing/Makefile config.status: creating progs/xfm/xfmflip config.status: creating progs/minccomplete/minccomplete config.status: creating progs/minchistory/minchistory config.status: creating progs/mincpik/mincpik config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --enable-minc2 make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build -a make[1]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»' Making all in . make[3]: Entering directory '/«PKGBUILDDIR»' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/ParseArgv.lo libsrc/ParseArgv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/ParseArgv.c -fPIC -DPIC -o libsrc/.libs/ParseArgv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/ParseArgv.c -o libsrc/ParseArgv.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/read_file_names.lo libsrc/read_file_names.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/read_file_names.c -fPIC -DPIC -o libsrc/.libs/read_file_names.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/read_file_names.c -o libsrc/read_file_names.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/dim_conversion.lo libsrc/dim_conversion.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/dim_conversion.c -fPIC -DPIC -o libsrc/.libs/dim_conversion.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/dim_conversion.c -o libsrc/dim_conversion.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/image_conversion.lo libsrc/image_conversion.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/image_conversion.c -fPIC -DPIC -o libsrc/.libs/image_conversion.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/image_conversion.c -o libsrc/image_conversion.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/minc_convenience.lo libsrc/minc_convenience.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_convenience.c -fPIC -DPIC -o libsrc/.libs/minc_convenience.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_convenience.c -o libsrc/minc_convenience.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/minc_error.lo libsrc/minc_error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_error.c -fPIC -DPIC -o libsrc/.libs/minc_error.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_error.c -o libsrc/minc_error.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/nd_loop.lo libsrc/nd_loop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/nd_loop.c -fPIC -DPIC -o libsrc/.libs/nd_loop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/nd_loop.c -o libsrc/nd_loop.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/netcdf_convenience.lo libsrc/netcdf_convenience.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/netcdf_convenience.c -fPIC -DPIC -o libsrc/.libs/netcdf_convenience.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/netcdf_convenience.c -o libsrc/netcdf_convenience.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/time_stamp.lo libsrc/time_stamp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/time_stamp.c -fPIC -DPIC -o libsrc/.libs/time_stamp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/time_stamp.c -o libsrc/time_stamp.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/value_conversion.lo libsrc/value_conversion.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/value_conversion.c -fPIC -DPIC -o libsrc/.libs/value_conversion.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/value_conversion.c -o libsrc/value_conversion.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/voxel_loop.lo libsrc/voxel_loop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/voxel_loop.c -fPIC -DPIC -o libsrc/.libs/voxel_loop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/voxel_loop.c -o libsrc/voxel_loop.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/hdf_convenience.lo libsrc/hdf_convenience.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/hdf_convenience.c -fPIC -DPIC -o libsrc/.libs/hdf_convenience.o libsrc/hdf_convenience.c:1110:58: warning: cast to 'void *' from smaller integer type 'hid_t' (aka 'int') [-Wint-to-void-pointer-cast] H5Aiterate1(var->dset_id, &i, hdf_copy_attr, (void *) new_dset_id); ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/hdf_convenience.c -o libsrc/hdf_convenience.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/minc_compat.lo libsrc/minc_compat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_compat.c -fPIC -DPIC -o libsrc/.libs/minc_compat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_compat.c -o libsrc/minc_compat.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc/minc_simple.lo libsrc/minc_simple.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_simple.c -fPIC -DPIC -o libsrc/.libs/minc_simple.o libsrc/minc_simple.c:407:43: warning: passing 'long [4]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] restructure_array(var_ndims, dataptr, count, nctypelen(nctype), ^~~~~ libsrc/minc_simple.c:65:52: note: passing argument to parameter 'lengths_perm' here const unsigned long *lengths_perm, ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc/minc_simple.c -o libsrc/minc_simple.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/convert.lo libsrc2/convert.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/convert.c -fPIC -DPIC -o libsrc2/.libs/convert.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/convert.c -o libsrc2/convert.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/datatype.lo libsrc2/datatype.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/datatype.c -fPIC -DPIC -o libsrc2/.libs/datatype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/datatype.c -o libsrc2/datatype.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/dimension.lo libsrc2/dimension.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/dimension.c -fPIC -DPIC -o libsrc2/.libs/dimension.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/dimension.c -o libsrc2/dimension.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/free.lo libsrc2/free.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/free.c -fPIC -DPIC -o libsrc2/.libs/free.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/free.c -o libsrc2/free.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/grpattr.lo libsrc2/grpattr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/grpattr.c -fPIC -DPIC -o libsrc2/.libs/grpattr.o libsrc2/grpattr.c:45:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:45:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:48:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:48:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:182:28: warning: passing 'int *' to parameter of type 'unsigned int *' converts between pointers to integer types with different sign [-Wpointer-sign] &data->frame_ptr->att_idx, milist_attr_op, data); ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5Apublic.h:110:52: note: passing argument to parameter 'attr_num' here H5_DLL herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, ^ libsrc2/grpattr.c:269:46: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, data->frame_ptr->relpath, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:269:46: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, data->frame_ptr->relpath, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:322:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:322:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:324:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:324:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:377:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:377:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:379:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:379:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:426:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:426:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:428:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:428:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:480:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:480:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:482:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:482:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:565:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:565:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:567:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:567:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:688:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:688:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:690:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:690:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:779:32: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:779:32: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, "/", sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 libsrc2/grpattr.c:781:29: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libsrc2/grpattr.c:781:29: note: change the argument to be the free space in the destination buffer minus the terminating null byte strncat(fullpath, path, sizeof (fullpath) - strlen(fullpath)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sizeof(fullpath) - strlen(fullpath) - 1 18 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/grpattr.c -o libsrc2/grpattr.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/hyper.lo libsrc2/hyper.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/hyper.c -fPIC -DPIC -o libsrc2/.libs/hyper.o libsrc2/hyper.c:427:52: warning: passing 'hsize_t [100]' to parameter of type 'hssize_t *' (aka 'long long *') converts between pointers to integer types with different sign [-Wpointer-sign] hdf_start, ^~~~~~~~~ libsrc2/hyper.c:284:39: note: passing argument to parameter 'hdf_start' here hssize_t hdf_start[], ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/hyper.c -o libsrc2/hyper.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/label.lo libsrc2/label.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/label.c -fPIC -DPIC -o libsrc2/.libs/label.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/label.c -o libsrc2/label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/m2util.lo libsrc2/m2util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/m2util.c -fPIC -DPIC -o libsrc2/.libs/m2util.o libsrc2/m2util.c:1605:45: warning: passing 'hsize_t [100]' to parameter of type 'hssize_t *' (aka 'long long *') converts between pointers to integer types with different sign [-Wpointer-sign] miconvert_hyperslab_to_real(volume, start, count, in_ptr); ^~~~~ libsrc2/m2util.c:1374:57: note: passing argument to parameter 'start' here miconvert_hyperslab_to_real(mihandle_t volume, hssize_t start[], ^ libsrc2/m2util.c:1618:46: warning: passing 'hsize_t [100]' to parameter of type 'hssize_t *' (aka 'long long *') converts between pointers to integer types with different sign [-Wpointer-sign] miconvert_hyperslab_to_voxel(volume, start, count, out_ptr, ^~~~~ libsrc2/m2util.c:1314:58: note: passing argument to parameter 'start' here miconvert_hyperslab_to_voxel(mihandle_t volume, hssize_t start[], ^ libsrc2/m2util.c:1627:32: warning: incompatible pointer types passing 'const hsize_t **' (aka 'const unsigned long long **') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *'); dereference with * [-Wincompatible-pointer-types] (const H5_START_T **) &start[0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * /usr/include/hdf5/serial/H5Spublic.h:129:37: note: passing argument to parameter 'coord' here size_t num_elem, const hsize_t *coord); ^ 3 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/m2util.c -o libsrc2/m2util.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/record.lo libsrc2/record.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/record.c -fPIC -DPIC -o libsrc2/.libs/record.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/record.c -o libsrc2/record.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/slice.lo libsrc2/slice.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/slice.c -fPIC -DPIC -o libsrc2/.libs/slice.o libsrc2/slice.c:87:5: warning: incompatible pointer types passing 'const hsize_t **' (aka 'const unsigned long long **') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *'); dereference with * [-Wincompatible-pointer-types] (const hsize_t **) &hdf_start); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * /usr/include/hdf5/serial/H5Spublic.h:129:37: note: passing argument to parameter 'coord' here size_t num_elem, const hsize_t *coord); ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/slice.c -o libsrc2/slice.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/valid.lo libsrc2/valid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/valid.c -fPIC -DPIC -o libsrc2/.libs/valid.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/valid.c -o libsrc2/valid.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/volprops.lo libsrc2/volprops.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/volprops.c -fPIC -DPIC -o libsrc2/.libs/volprops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/volprops.c -o libsrc2/volprops.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libsrc2/volume.lo libsrc2/volume.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/volume.c -fPIC -DPIC -o libsrc2/.libs/volume.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c libsrc2/volume.c -o libsrc2/volume.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libminc2.la -rpath /usr/lib/x86_64-linux-gnu libsrc/ParseArgv.lo libsrc/read_file_names.lo libsrc/dim_conversion.lo libsrc/image_conversion.lo libsrc/minc_convenience.lo libsrc/minc_error.lo libsrc/nd_loop.lo libsrc/netcdf_convenience.lo libsrc/time_stamp.lo libsrc/value_conversion.lo libsrc/voxel_loop.lo libsrc/hdf_convenience.lo libsrc/minc_compat.lo libsrc/minc_simple.lo libsrc2/convert.lo libsrc2/datatype.lo libsrc2/dimension.lo libsrc2/free.lo libsrc2/grpattr.lo libsrc2/hyper.lo libsrc2/label.lo libsrc2/m2util.lo libsrc2/record.lo libsrc2/slice.lo libsrc2/valid.lo libsrc2/volprops.lo libsrc2/volume.lo -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -shared -fPIC -DPIC libsrc/.libs/ParseArgv.o libsrc/.libs/read_file_names.o libsrc/.libs/dim_conversion.o libsrc/.libs/image_conversion.o libsrc/.libs/minc_convenience.o libsrc/.libs/minc_error.o libsrc/.libs/nd_loop.o libsrc/.libs/netcdf_convenience.o libsrc/.libs/time_stamp.o libsrc/.libs/value_conversion.o libsrc/.libs/voxel_loop.o libsrc/.libs/hdf_convenience.o libsrc/.libs/minc_compat.o libsrc/.libs/minc_simple.o libsrc2/.libs/convert.o libsrc2/.libs/datatype.o libsrc2/.libs/dimension.o libsrc2/.libs/free.o libsrc2/.libs/grpattr.o libsrc2/.libs/hyper.o libsrc2/.libs/label.o libsrc2/.libs/m2util.o libsrc2/.libs/record.o libsrc2/.libs/slice.o libsrc2/.libs/valid.o libsrc2/.libs/volprops.o libsrc2/.libs/volume.o -lhdf5 -lz -lnetcdf -lm -O2 -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libminc2.so.3 -o .libs/libminc2.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libminc2.so.3" && ln -s "libminc2.so.3.0.0" "libminc2.so.3") libtool: link: (cd ".libs" && rm -f "libminc2.so" && ln -s "libminc2.so.3.0.0" "libminc2.so") libtool: link: ar cru .libs/libminc2.a libsrc/ParseArgv.o libsrc/read_file_names.o libsrc/dim_conversion.o libsrc/image_conversion.o libsrc/minc_convenience.o libsrc/minc_error.o libsrc/nd_loop.o libsrc/netcdf_convenience.o libsrc/time_stamp.o libsrc/value_conversion.o libsrc/voxel_loop.o libsrc/hdf_convenience.o libsrc/minc_compat.o libsrc/minc_simple.o libsrc2/convert.o libsrc2/datatype.o libsrc2/dimension.o libsrc2/free.o libsrc2/grpattr.o libsrc2/hyper.o libsrc2/label.o libsrc2/m2util.o libsrc2/record.o libsrc2/slice.o libsrc2/valid.o libsrc2/volprops.o libsrc2/volume.o libtool: link: ranlib .libs/libminc2.a libtool: link: ( cd ".libs" && rm -f "libminc2.la" && ln -s "../libminc2.la" "libminc2.la" ) /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/colour.lo volume_io/Geometry/colour.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/colour.c -fPIC -DPIC -o volume_io/Geometry/.libs/colour.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/colour.c -o volume_io/Geometry/colour.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/colour_def.lo volume_io/Geometry/colour_def.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/colour_def.c -fPIC -DPIC -o volume_io/Geometry/.libs/colour_def.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/colour_def.c -o volume_io/Geometry/colour_def.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/gaussian.lo volume_io/Geometry/gaussian.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/gaussian.c -fPIC -DPIC -o volume_io/Geometry/.libs/gaussian.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/gaussian.c -o volume_io/Geometry/gaussian.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/inverse.lo volume_io/Geometry/inverse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/inverse.c -fPIC -DPIC -o volume_io/Geometry/.libs/inverse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/inverse.c -o volume_io/Geometry/inverse.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/newton.lo volume_io/Geometry/newton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/newton.c -fPIC -DPIC -o volume_io/Geometry/.libs/newton.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/newton.c -o volume_io/Geometry/newton.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/points.lo volume_io/Geometry/points.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/points.c -fPIC -DPIC -o volume_io/Geometry/.libs/points.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/points.c -o volume_io/Geometry/points.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/splines.lo volume_io/Geometry/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/splines.c -fPIC -DPIC -o volume_io/Geometry/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/splines.c -o volume_io/Geometry/splines.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/tensors.lo volume_io/Geometry/tensors.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/tensors.c -fPIC -DPIC -o volume_io/Geometry/.libs/tensors.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/tensors.c -o volume_io/Geometry/tensors.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Geometry/transforms.lo volume_io/Geometry/transforms.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/transforms.c -fPIC -DPIC -o volume_io/Geometry/.libs/transforms.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Geometry/transforms.c -o volume_io/Geometry/transforms.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/MNI_formats/gen_xf_io.lo volume_io/MNI_formats/gen_xf_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/gen_xf_io.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/gen_xf_io.o volume_io/MNI_formats/gen_xf_io.c:394:13: warning: enumeration values 'USER_TRANSFORM' and 'CONCATENATED_TRANSFORM' not handled in switch [-Wswitch] switch( type ) ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/gen_xf_io.c -o volume_io/MNI_formats/gen_xf_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/MNI_formats/gen_xfs.lo volume_io/MNI_formats/gen_xfs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/gen_xfs.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/gen_xfs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/gen_xfs.c -o volume_io/MNI_formats/gen_xfs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/MNI_formats/grid_transforms.lo volume_io/MNI_formats/grid_transforms.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/grid_transforms.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/grid_transforms.o volume_io/MNI_formats/grid_transforms.c:511:21: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VALUE_4D_TYPED( coefs[ind0], (Real), volume, ^ ./volume_io/Include/volume_io/volume.h:300:14: note: expanded from macro 'GET_VALUE_4D_TYPED' GET_VOXEL_4D_TYPED( value, vtype, volume, x, y, z, t ); \ ^ ./volume_io/Include/volume_io/volume.h:187:16: note: expanded from macro 'GET_VOXEL_4D_TYPED' GET_MULTIDIM_4D( value, vtype, (volume)->array, x, y, z, t ) ^ ./volume_io/Include/volume_io/multidim.h:198:12: note: expanded from macro 'GET_MULTIDIM_4D' GET_GIVEN_DIM( value, vtype, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/grid_transforms.c -o volume_io/MNI_formats/grid_transforms.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/MNI_formats/mni_io.lo volume_io/MNI_formats/mni_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/mni_io.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/mni_io.o volume_io/MNI_formats/mni_io.c:52:13: warning: add explicit braces to avoid dangling else [-Wdangling-else] else if( *ch == '\n' ) ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/mni_io.c -o volume_io/MNI_formats/mni_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/MNI_formats/tag_points.lo volume_io/MNI_formats/tag_points.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/tag_points.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/tag_points.o volume_io/MNI_formats/tag_points.c:387:20: warning: '&&' within '||' [-Wlogical-op-parentheses] (quoted && str[i] != '"' || ~~~~~~~^~~~~~~~~~~~~~~~ ~~ volume_io/MNI_formats/tag_points.c:387:20: note: place parentheses around the '&&' expression to silence this warning (quoted && str[i] != '"' || ^ ( ) volume_io/MNI_formats/tag_points.c:388:38: warning: '&&' within '||' [-Wlogical-op-parentheses] !quoted && str[i] != ' ' && str[i] != '\t') ) ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ volume_io/MNI_formats/tag_points.c:388:38: note: place parentheses around the '&&' expression to silence this warning !quoted && str[i] != ' ' && str[i] != '\t') ) ^ ( ) 2 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/tag_points.c -o volume_io/MNI_formats/tag_points.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/MNI_formats/thin_plate_spline.lo volume_io/MNI_formats/thin_plate_spline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/thin_plate_spline.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/thin_plate_spline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/MNI_formats/thin_plate_spline.c -o volume_io/MNI_formats/thin_plate_spline.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/alloc.lo volume_io/Prog_utils/alloc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/alloc.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/alloc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/alloc.c -o volume_io/Prog_utils/alloc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/alloc_check.lo volume_io/Prog_utils/alloc_check.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/alloc_check.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/alloc_check.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/alloc_check.c -o volume_io/Prog_utils/alloc_check.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/arrays.lo volume_io/Prog_utils/arrays.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/arrays.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/arrays.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/arrays.c -o volume_io/Prog_utils/arrays.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/files.lo volume_io/Prog_utils/files.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/files.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/files.o volume_io/Prog_utils/files.c:1567:20: warning: '&&' within '||' [-Wlogical-op-parentheses] (quoted && ch != quote || ~~~~~~~^~~~~~~~~~~~~~ ~~ volume_io/Prog_utils/files.c:1567:20: note: place parentheses around the '&&' expression to silence this warning (quoted && ch != quote || ^ ( ) volume_io/Prog_utils/files.c:1568:48: warning: '&&' within '||' [-Wlogical-op-parentheses] !quoted && ch != ' ' && ch != '\t' && ch != '\n') ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ volume_io/Prog_utils/files.c:1568:48: note: place parentheses around the '&&' expression to silence this warning !quoted && ch != ' ' && ch != '\t' && ch != '\n') ) ^ ( ) volume_io/Prog_utils/files.c:2354:23: warning: expression which evaluates to zero treated as a null pointer constant of type 'STRING' (aka 'char *') [-Wnon-literal-null-conversion] str[length] = END_OF_STRING; ^~~~~~~~~~~~~ ./volume_io/Include/volume_io/string_funcs.h:37:41: note: expanded from macro 'END_OF_STRING' #define END_OF_STRING ((char) 0) ^~~~~~~~~~ 3 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/files.c -o volume_io/Prog_utils/files.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/print.lo volume_io/Prog_utils/print.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/print.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/print.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/print.c -o volume_io/Prog_utils/print.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/progress.lo volume_io/Prog_utils/progress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/progress.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/progress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/progress.c -o volume_io/Prog_utils/progress.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/string.lo volume_io/Prog_utils/string.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/string.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/string.c -o volume_io/Prog_utils/string.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Prog_utils/time.lo volume_io/Prog_utils/time.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/time.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/time.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Prog_utils/time.c -o volume_io/Prog_utils/time.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/evaluate.lo volume_io/Volumes/evaluate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/evaluate.c -fPIC -DPIC -o volume_io/Volumes/.libs/evaluate.o volume_io/Volumes/evaluate.c:95:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_TYPED( voxel, (Real), volume, v0, v1, v2, v3, v4 ); ^ ./volume_io/Include/volume_io/volume.h:201:16: note: expanded from macro 'GET_VOXEL_TYPED' GET_MULTIDIM( value, vtype, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:208:19: note: expanded from macro 'GET_MULTIDIM' case 1: GET_MULTIDIM_1D( value, vtype, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:189:12: note: expanded from macro 'GET_MULTIDIM_1D' GET_GIVEN_DIM( value, vtype, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:95:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:201:16: note: expanded from macro 'GET_VOXEL_TYPED' GET_MULTIDIM( value, vtype, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:209:19: note: expanded from macro 'GET_MULTIDIM' case 2: GET_MULTIDIM_2D( value, vtype, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:192:12: note: expanded from macro 'GET_MULTIDIM_2D' GET_GIVEN_DIM( value, vtype, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:95:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:201:16: note: expanded from macro 'GET_VOXEL_TYPED' GET_MULTIDIM( value, vtype, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:210:19: note: expanded from macro 'GET_MULTIDIM' case 3: GET_MULTIDIM_3D( value, vtype, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:95:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:201:16: note: expanded from macro 'GET_VOXEL_TYPED' GET_MULTIDIM( value, vtype, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:211:19: note: expanded from macro 'GET_MULTIDIM' case 4: GET_MULTIDIM_4D( value, vtype, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:198:12: note: expanded from macro 'GET_MULTIDIM_4D' GET_GIVEN_DIM( value, vtype, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:95:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:201:16: note: expanded from macro 'GET_VOXEL_TYPED' GET_MULTIDIM( value, vtype, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:212:19: note: expanded from macro 'GET_MULTIDIM' case 5: GET_MULTIDIM_5D( value, vtype, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:201:12: note: expanded from macro 'GET_MULTIDIM_5D' GET_GIVEN_DIM( value, vtype, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:163:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] SET_VOXEL( volume, v0, v1, v2, v3, v4, voxel ); ^ ./volume_io/Include/volume_io/volume.h:161:16: note: expanded from macro 'SET_VOXEL' SET_MULTIDIM( (volume)->array, x, y, z, t, v, value ) ^ ./volume_io/Include/volume_io/multidim.h:143:19: note: expanded from macro 'SET_MULTIDIM' case 1: SET_MULTIDIM_1D( array, x, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:124:12: note: expanded from macro 'SET_MULTIDIM_1D' SET_GIVEN_DIM( array, *, [x], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:163:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:161:16: note: expanded from macro 'SET_VOXEL' SET_MULTIDIM( (volume)->array, x, y, z, t, v, value ) ^ ./volume_io/Include/volume_io/multidim.h:144:19: note: expanded from macro 'SET_MULTIDIM' case 2: SET_MULTIDIM_2D( array, x, y, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:127:12: note: expanded from macro 'SET_MULTIDIM_2D' SET_GIVEN_DIM( array, **, [x][y], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:163:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:161:16: note: expanded from macro 'SET_VOXEL' SET_MULTIDIM( (volume)->array, x, y, z, t, v, value ) ^ ./volume_io/Include/volume_io/multidim.h:145:19: note: expanded from macro 'SET_MULTIDIM' case 3: SET_MULTIDIM_3D( array, x, y, z, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:130:12: note: expanded from macro 'SET_MULTIDIM_3D' SET_GIVEN_DIM( array, ***, [x][y][z], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:163:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:161:16: note: expanded from macro 'SET_VOXEL' SET_MULTIDIM( (volume)->array, x, y, z, t, v, value ) ^ ./volume_io/Include/volume_io/multidim.h:146:19: note: expanded from macro 'SET_MULTIDIM' case 4: SET_MULTIDIM_4D( array, x, y, z, t, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:133:12: note: expanded from macro 'SET_MULTIDIM_4D' SET_GIVEN_DIM( array, ****, [x][y][z][t], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:163:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:161:16: note: expanded from macro 'SET_VOXEL' SET_MULTIDIM( (volume)->array, x, y, z, t, v, value ) ^ ./volume_io/Include/volume_io/multidim.h:147:19: note: expanded from macro 'SET_MULTIDIM' case 5: SET_MULTIDIM_5D( array, x, y, z, t, v, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:136:12: note: expanded from macro 'SET_MULTIDIM_5D' SET_GIVEN_DIM( array, *****, [x][y][z][t][v], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:257:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[0], (Real), volume, i , j , k ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:258:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[1], (Real), volume, i , j , k+1 ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:259:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[2], (Real), volume, i , j+1, k ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:260:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[3], (Real), volume, i , j+1, k+1 ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:261:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[4], (Real), volume, i+1, j , k ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:262:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[5], (Real), volume, i+1, j , k+1 ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:263:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[6], (Real), volume, i+1, j+1, k ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:264:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[7], (Real), volume, i+1, j+1, k+1 ); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:283:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_3D_TYPED( coefs[c], (Real), volume, i+dx, j+dy, k+dz); ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:562:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VALUE_1D_TYPED( coefs[ind], (Real), volume, v0 ); ^ ./volume_io/Include/volume_io/volume.h:282:14: note: expanded from macro 'GET_VALUE_1D_TYPED' GET_VOXEL_1D_TYPED( value, vtype, volume, x ); \ ^ ./volume_io/Include/volume_io/volume.h:169:16: note: expanded from macro 'GET_VOXEL_1D_TYPED' GET_MULTIDIM_1D( value, vtype, (volume)->array, x ) ^ ./volume_io/Include/volume_io/multidim.h:189:12: note: expanded from macro 'GET_MULTIDIM_1D' GET_GIVEN_DIM( value, vtype, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:572:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VALUE_2D_TYPED( coefs[ind], (Real), volume, v0, v1 ); ^ ./volume_io/Include/volume_io/volume.h:288:14: note: expanded from macro 'GET_VALUE_2D_TYPED' GET_VOXEL_2D_TYPED( value, vtype, volume, x, y ); \ ^ ./volume_io/Include/volume_io/volume.h:175:16: note: expanded from macro 'GET_VOXEL_2D_TYPED' GET_MULTIDIM_2D( value, vtype, (volume)->array, x, y ) ^ ./volume_io/Include/volume_io/multidim.h:192:12: note: expanded from macro 'GET_MULTIDIM_2D' GET_GIVEN_DIM( value, vtype, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:586:21: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VALUE_3D_TYPED( coefs[ind], (Real), volume, v0, v1, v2); ^ ./volume_io/Include/volume_io/volume.h:294:14: note: expanded from macro 'GET_VALUE_3D_TYPED' GET_VOXEL_3D_TYPED( value, vtype, volume, x, y, z ); \ ^ ./volume_io/Include/volume_io/volume.h:181:16: note: expanded from macro 'GET_VOXEL_3D_TYPED' GET_MULTIDIM_3D( value, vtype, (volume)->array, x, y, z ) ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:604:25: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VALUE_4D_TYPED( coefs[ind], (Real), ^ ./volume_io/Include/volume_io/volume.h:300:14: note: expanded from macro 'GET_VALUE_4D_TYPED' GET_VOXEL_4D_TYPED( value, vtype, volume, x, y, z, t ); \ ^ ./volume_io/Include/volume_io/volume.h:187:16: note: expanded from macro 'GET_VOXEL_4D_TYPED' GET_MULTIDIM_4D( value, vtype, (volume)->array, x, y, z, t ) ^ ./volume_io/Include/volume_io/multidim.h:198:12: note: expanded from macro 'GET_MULTIDIM_4D' GET_GIVEN_DIM( value, vtype, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:627:29: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VALUE_5D_TYPED( coefs[ind], (Real), volume, ^ ./volume_io/Include/volume_io/volume.h:306:14: note: expanded from macro 'GET_VALUE_5D_TYPED' GET_VOXEL_5D_TYPED( value, vtype, volume, x, y, z, t, v ); \ ^ ./volume_io/Include/volume_io/volume.h:193:16: note: expanded from macro 'GET_VOXEL_5D_TYPED' GET_MULTIDIM_5D( value, vtype, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:201:12: note: expanded from macro 'GET_MULTIDIM_5D' GET_GIVEN_DIM( value, vtype, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/evaluate.c:731:38: warning: '&&' within '||' [-Wlogical-op-parentheses] interpolating_dimensions[1] && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ volume_io/Volumes/evaluate.c:731:38: note: place parentheses around the '&&' expression to silence this warning interpolating_dimensions[1] && ^ 25 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/evaluate.c -o volume_io/Volumes/evaluate.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/get_hyperslab.lo volume_io/Volumes/get_hyperslab.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/get_hyperslab.c -fPIC -DPIC -o volume_io/Volumes/.libs/get_hyperslab.o volume_io/Volumes/get_hyperslab.c:261:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/get_hyperslab.c:509:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/get_hyperslab.c:753:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/get_hyperslab.c:928:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/get_hyperslab.c:1063:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/get_hyperslab.c:1210:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_5D( void_ptr, volume->array, v0, v1, v2, v3, v4 ) ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/get_hyperslab.c:1285:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_4D( void_ptr, volume->array, v0, v1, v2, v3 ) ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/get_hyperslab.c:1350:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_3D( void_ptr, volume->array, v0, v1, v2 ) ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/get_hyperslab.c:1405:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_2D( void_ptr, volume->array, v0, v1 ) ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/get_hyperslab.c:1450:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_1D( void_ptr, volume->array, v0 ) ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ 10 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/get_hyperslab.c -o volume_io/Volumes/get_hyperslab.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/input_free.lo volume_io/Volumes/input_free.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/input_free.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_free.o volume_io/Volumes/input_free.c:225:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ volume_io/Volumes/input_free.c:315:32: warning: '&&' within '||' [-Wlogical-op-parentheses] if( slice == 0 && i == 0 || value < min_value ) ~~~~~~~~~~~^~~~~~~~~ ~~ volume_io/Volumes/input_free.c:315:32: note: place parentheses around the '&&' expression to silence this warning if( slice == 0 && i == 0 || value < min_value ) ^ ( ) volume_io/Volumes/input_free.c:317:32: warning: '&&' within '||' [-Wlogical-op-parentheses] if( slice == 0 && i == 0 || value > max_value ) ~~~~~~~~~~~^~~~~~~~~ ~~ volume_io/Volumes/input_free.c:317:32: note: place parentheses around the '&&' expression to silence this warning if( slice == 0 && i == 0 || value > max_value ) ^ ( ) 3 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/input_free.c -o volume_io/Volumes/input_free.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/input_mnc.lo volume_io/Volumes/input_mnc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/input_mnc.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_mnc.o volume_io/Volumes/input_mnc.c:840:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, rgb_array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:840:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:840:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:840:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:840:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:844:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, buffer_array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:844:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:844:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:844:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:844:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:898:26: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM( rgb[i], (Real), rgb_array, ^ ./volume_io/Include/volume_io/multidim.h:208:19: note: expanded from macro 'GET_MULTIDIM' case 1: GET_MULTIDIM_1D( value, vtype, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:189:12: note: expanded from macro 'GET_MULTIDIM_1D' GET_GIVEN_DIM( value, vtype, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:898:26: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:209:19: note: expanded from macro 'GET_MULTIDIM' case 2: GET_MULTIDIM_2D( value, vtype, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:192:12: note: expanded from macro 'GET_MULTIDIM_2D' GET_GIVEN_DIM( value, vtype, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:898:26: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:210:19: note: expanded from macro 'GET_MULTIDIM' case 3: GET_MULTIDIM_3D( value, vtype, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:195:12: note: expanded from macro 'GET_MULTIDIM_3D' GET_GIVEN_DIM( value, vtype, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:898:26: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:211:19: note: expanded from macro 'GET_MULTIDIM' case 4: GET_MULTIDIM_4D( value, vtype, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:198:12: note: expanded from macro 'GET_MULTIDIM_4D' GET_GIVEN_DIM( value, vtype, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:898:26: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:212:19: note: expanded from macro 'GET_MULTIDIM' case 5: GET_MULTIDIM_5D( value, vtype, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:201:12: note: expanded from macro 'GET_MULTIDIM_5D' GET_GIVEN_DIM( value, vtype, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:905:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] SET_MULTIDIM( buffer_array, ^ ./volume_io/Include/volume_io/multidim.h:143:19: note: expanded from macro 'SET_MULTIDIM' case 1: SET_MULTIDIM_1D( array, x, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:124:12: note: expanded from macro 'SET_MULTIDIM_1D' SET_GIVEN_DIM( array, *, [x], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:905:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:144:19: note: expanded from macro 'SET_MULTIDIM' case 2: SET_MULTIDIM_2D( array, x, y, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:127:12: note: expanded from macro 'SET_MULTIDIM_2D' SET_GIVEN_DIM( array, **, [x][y], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:905:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:145:19: note: expanded from macro 'SET_MULTIDIM' case 3: SET_MULTIDIM_3D( array, x, y, z, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:130:12: note: expanded from macro 'SET_MULTIDIM_3D' SET_GIVEN_DIM( array, ***, [x][y][z], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:905:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:146:19: note: expanded from macro 'SET_MULTIDIM' case 4: SET_MULTIDIM_4D( array, x, y, z, t, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:133:12: note: expanded from macro 'SET_MULTIDIM_4D' SET_GIVEN_DIM( array, ****, [x][y][z][t], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:905:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:147:19: note: expanded from macro 'SET_MULTIDIM' case 5: SET_MULTIDIM_5D( array, x, y, z, t, v, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:136:12: note: expanded from macro 'SET_MULTIDIM_5D' SET_GIVEN_DIM( array, *****, [x][y][z][t][v], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:913:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, buffer_array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:913:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:913:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:913:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:913:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:969:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( array_data_ptr, volume->array, ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:969:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:969:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:969:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/input_mnc.c:969:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ 30 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/input_mnc.c -o volume_io/Volumes/input_mnc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/input_volume.lo volume_io/Volumes/input_volume.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/input_volume.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_volume.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/input_volume.c -o volume_io/Volumes/input_volume.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/multidim_arrays.lo volume_io/Volumes/multidim_arrays.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/multidim_arrays.c -fPIC -DPIC -o volume_io/Volumes/.libs/multidim_arrays.o volume_io/Volumes/multidim_arrays.c:108:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( type ) ^ volume_io/Volumes/multidim_arrays.c:128:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( type ) ^ volume_io/Volumes/multidim_arrays.c:648:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, *dest, dest_ind[0], dest_ind[1], dest_ind[2], ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:648:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:648:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:648:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:648:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:656:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, *src, src_ind[0], src_ind[1], src_ind[2], ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:656:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:656:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:656:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/multidim_arrays.c:656:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ 12 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/multidim_arrays.c -o volume_io/Volumes/multidim_arrays.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/output_mnc.lo volume_io/Volumes/output_mnc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/output_mnc.c -fPIC -DPIC -o volume_io/Volumes/.libs/output_mnc.o volume_io/Volumes/output_mnc.c:55:23: warning: '&&' within '||' [-Wlogical-op-parentheses] if( i == axis && dir_cosines[i] != 1.0 || ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ~~ volume_io/Volumes/output_mnc.c:55:23: note: place parentheses around the '&&' expression to silence this warning if( i == axis && dir_cosines[i] != 1.0 || ^ ( ) volume_io/Volumes/output_mnc.c:56:23: warning: '&&' within '||' [-Wlogical-op-parentheses] i != axis && dir_cosines[i] != 0.0 ) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ volume_io/Volumes/output_mnc.c:56:23: note: place parentheses around the '&&' expression to silence this warning i != axis && dir_cosines[i] != 0.0 ) ^ ( ) volume_io/Volumes/output_mnc.c:1095:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, buffer_array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1095:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1095:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1095:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1095:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1104:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( void_ptr, buffer_array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1104:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1104:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1104:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1104:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1231:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] SET_MULTIDIM( array, v[array_to_volume[0]], ^ ./volume_io/Include/volume_io/multidim.h:143:19: note: expanded from macro 'SET_MULTIDIM' case 1: SET_MULTIDIM_1D( array, x, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:124:12: note: expanded from macro 'SET_MULTIDIM_1D' SET_GIVEN_DIM( array, *, [x], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1231:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:144:19: note: expanded from macro 'SET_MULTIDIM' case 2: SET_MULTIDIM_2D( array, x, y, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:127:12: note: expanded from macro 'SET_MULTIDIM_2D' SET_GIVEN_DIM( array, **, [x][y], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1231:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:145:19: note: expanded from macro 'SET_MULTIDIM' case 3: SET_MULTIDIM_3D( array, x, y, z, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:130:12: note: expanded from macro 'SET_MULTIDIM_3D' SET_GIVEN_DIM( array, ***, [x][y][z], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1231:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:146:19: note: expanded from macro 'SET_MULTIDIM' case 4: SET_MULTIDIM_4D( array, x, y, z, t, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:133:12: note: expanded from macro 'SET_MULTIDIM_4D' SET_GIVEN_DIM( array, ****, [x][y][z][t], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1231:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:147:19: note: expanded from macro 'SET_MULTIDIM' case 5: SET_MULTIDIM_5D( array, x, y, z, t, v, value ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:136:12: note: expanded from macro 'SET_MULTIDIM_5D' SET_GIVEN_DIM( array, *****, [x][y][z][t][v], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1240:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( array_data_ptr, array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1240:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1240:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1240:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1240:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1248:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( array_data_ptr, volume->array, ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1248:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1248:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1248:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/output_mnc.c:1248:9: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ 27 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/output_mnc.c -o volume_io/Volumes/output_mnc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/output_volume.lo volume_io/Volumes/output_volume.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/output_volume.c -fPIC -DPIC -o volume_io/Volumes/.libs/output_volume.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/output_volume.c -o volume_io/Volumes/output_volume.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/set_hyperslab.lo volume_io/Volumes/set_hyperslab.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/set_hyperslab.c -fPIC -DPIC -o volume_io/Volumes/.libs/set_hyperslab.o volume_io/Volumes/set_hyperslab.c:269:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/set_hyperslab.c:518:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/set_hyperslab.c:730:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/set_hyperslab.c:904:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/set_hyperslab.c:1037:13: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( data_type ) ^ volume_io/Volumes/set_hyperslab.c:1184:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_5D( void_ptr, volume->array, v0, v1, v2, v3, v4 ) ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/set_hyperslab.c:1259:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_4D( void_ptr, volume->array, v0, v1, v2, v3 ) ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/set_hyperslab.c:1324:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_3D( void_ptr, volume->array, v0, v1, v2 ) ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/set_hyperslab.c:1379:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_2D( void_ptr, volume->array, v0, v1 ) ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/set_hyperslab.c:1424:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR_1D( void_ptr, volume->array, v0 ) ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ 10 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/set_hyperslab.c -o volume_io/Volumes/set_hyperslab.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/volume_cache.lo volume_io/Volumes/volume_cache.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/volume_cache.c -fPIC -DPIC -o volume_io/Volumes/.libs/volume_cache.o volume_io/Volumes/volume_cache.c:481:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( array_data_ptr, block->array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:481:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:481:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:481:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:481:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1062:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_PTR( array_data_ptr, block->array, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1062:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1062:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1062:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1062:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1416:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_MULTIDIM_1D( value, (Real), block->array, offset ); ^ ./volume_io/Include/volume_io/multidim.h:189:12: note: expanded from macro 'GET_MULTIDIM_1D' GET_GIVEN_DIM( value, vtype, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:158:18: note: expanded from macro 'GET_GIVEN_DIM' switch( (array).data_type ) \ ^ volume_io/Volumes/volume_cache.c:1462:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] SET_MULTIDIM_1D( block->array, offset, value ); ^ ./volume_io/Include/volume_io/multidim.h:124:12: note: expanded from macro 'SET_MULTIDIM_1D' SET_GIVEN_DIM( array, *, [x], value ) ^ ./volume_io/Include/volume_io/multidim.h:63:18: note: expanded from macro 'SET_GIVEN_DIM' switch( (array).data_type ) \ ^ 12 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/volume_cache.c -o volume_io/Volumes/volume_cache.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volume_io/Volumes/volumes.lo volume_io/Volumes/volumes.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/volumes.c -fPIC -DPIC -o volume_io/Volumes/.libs/volumes.o volume_io/Volumes/volumes.c:424:38: warning: '&&' within '||' [-Wlogical-op-parentheses] return( volume->is_cached_volume && ~~~~~~~~~~~~~~~~~~~~~~~~~^~ volume_io/Volumes/volumes.c:424:38: note: place parentheses around the '&&' expression to silence this warning return( volume->is_cached_volume && ^ volume_io/Volumes/volumes.c:426:39: warning: '&&' within '||' [-Wlogical-op-parentheses] !volume->is_cached_volume && ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ volume_io/Volumes/volumes.c:426:39: note: place parentheses around the '&&' expression to silence this warning !volume->is_cached_volume && ^ volume_io/Volumes/volumes.c:2098:17: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] switch( get_volume_data_type( volume ) ) ^ volume_io/Volumes/volumes.c:2445:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_PTR( src, volume, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2445:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2445:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2445:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2445:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2446:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] GET_VOXEL_PTR( dest, copy, 0, 0, 0, 0, 0 ); ^ ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:274:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 1: GET_MULTIDIM_PTR_1D( ptr, array, x ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:255:12: note: expanded from macro 'GET_MULTIDIM_PTR_1D' GET_GIVEN_DIM_PTR( ptr, array, *, [x] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2446:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:275:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 2: GET_MULTIDIM_PTR_2D( ptr, array, x, y ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:258:12: note: expanded from macro 'GET_MULTIDIM_PTR_2D' GET_GIVEN_DIM_PTR( ptr, array, **, [x][y] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2446:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:276:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 3: GET_MULTIDIM_PTR_3D( ptr, array, x, y, z ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:261:12: note: expanded from macro 'GET_MULTIDIM_PTR_3D' GET_GIVEN_DIM_PTR( ptr, array, ***, [x][y][z] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2446:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:277:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 4: GET_MULTIDIM_PTR_4D( ptr, array, x, y, z, t ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:264:12: note: expanded from macro 'GET_MULTIDIM_PTR_4D' GET_GIVEN_DIM_PTR( ptr, array, ****, [x][y][z][t] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ volume_io/Volumes/volumes.c:2446:5: warning: enumeration values 'NO_DATA_TYPE' and 'MAX_DATA_TYPE' not handled in switch [-Wswitch] ./volume_io/Include/volume_io/volume.h:266:15: note: expanded from macro 'GET_VOXEL_PTR' GET_MULTIDIM_PTR( ptr, (volume)->array, x, y, z, t, v ) ^ ./volume_io/Include/volume_io/multidim.h:278:19: note: expanded from macro 'GET_MULTIDIM_PTR' case 5: GET_MULTIDIM_PTR_5D( ptr, array, x, y, z, t, v ); break; \ ^ ./volume_io/Include/volume_io/multidim.h:267:12: note: expanded from macro 'GET_MULTIDIM_PTR_5D' GET_GIVEN_DIM_PTR( ptr, array, *****, [x][y][z][t][v] ) ^ ./volume_io/Include/volume_io/multidim.h:223:18: note: expanded from macro 'GET_GIVEN_DIM_PTR' switch( (array).data_type ) \ ^ 13 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c volume_io/Volumes/volumes.c -o volume_io/Volumes/volumes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libvolume_io2.la -rpath /usr/lib/x86_64-linux-gnu volume_io/Geometry/colour.lo volume_io/Geometry/colour_def.lo volume_io/Geometry/gaussian.lo volume_io/Geometry/inverse.lo volume_io/Geometry/newton.lo volume_io/Geometry/points.lo volume_io/Geometry/splines.lo volume_io/Geometry/tensors.lo volume_io/Geometry/transforms.lo volume_io/MNI_formats/gen_xf_io.lo volume_io/MNI_formats/gen_xfs.lo volume_io/MNI_formats/grid_transforms.lo volume_io/MNI_formats/mni_io.lo volume_io/MNI_formats/tag_points.lo volume_io/MNI_formats/thin_plate_spline.lo volume_io/Prog_utils/alloc.lo volume_io/Prog_utils/alloc_check.lo volume_io/Prog_utils/arrays.lo volume_io/Prog_utils/files.lo volume_io/Prog_utils/print.lo volume_io/Prog_utils/progress.lo volume_io/Prog_utils/string.lo volume_io/Prog_utils/time.lo volume_io/Volumes/evaluate.lo volume_io/Volumes/get_hyperslab.lo volume_io/Volumes/input_free.lo volume_io/Volumes/input_mnc.lo volume_io/Volumes/input_volume.lo volume_io/Volumes/multidim_arrays.lo volume_io/Volumes/output_mnc.lo volume_io/Volumes/output_volume.lo volume_io/Volumes/set_hyperslab.lo volume_io/Volumes/volume_cache.lo volume_io/Volumes/volumes.lo -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -shared -fPIC -DPIC volume_io/Geometry/.libs/colour.o volume_io/Geometry/.libs/colour_def.o volume_io/Geometry/.libs/gaussian.o volume_io/Geometry/.libs/inverse.o volume_io/Geometry/.libs/newton.o volume_io/Geometry/.libs/points.o volume_io/Geometry/.libs/splines.o volume_io/Geometry/.libs/tensors.o volume_io/Geometry/.libs/transforms.o volume_io/MNI_formats/.libs/gen_xf_io.o volume_io/MNI_formats/.libs/gen_xfs.o volume_io/MNI_formats/.libs/grid_transforms.o volume_io/MNI_formats/.libs/mni_io.o volume_io/MNI_formats/.libs/tag_points.o volume_io/MNI_formats/.libs/thin_plate_spline.o volume_io/Prog_utils/.libs/alloc.o volume_io/Prog_utils/.libs/alloc_check.o volume_io/Prog_utils/.libs/arrays.o volume_io/Prog_utils/.libs/files.o volume_io/Prog_utils/.libs/print.o volume_io/Prog_utils/.libs/progress.o volume_io/Prog_utils/.libs/string.o volume_io/Prog_utils/.libs/time.o volume_io/Volumes/.libs/evaluate.o volume_io/Volumes/.libs/get_hyperslab.o volume_io/Volumes/.libs/input_free.o volume_io/Volumes/.libs/input_mnc.o volume_io/Volumes/.libs/input_volume.o volume_io/Volumes/.libs/multidim_arrays.o volume_io/Volumes/.libs/output_mnc.o volume_io/Volumes/.libs/output_volume.o volume_io/Volumes/.libs/set_hyperslab.o volume_io/Volumes/.libs/volume_cache.o volume_io/Volumes/.libs/volumes.o -lhdf5 -lz -lnetcdf -lm -O2 -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libvolume_io2.so.3 -o .libs/libvolume_io2.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libvolume_io2.so.3" && ln -s "libvolume_io2.so.3.0.0" "libvolume_io2.so.3") libtool: link: (cd ".libs" && rm -f "libvolume_io2.so" && ln -s "libvolume_io2.so.3.0.0" "libvolume_io2.so") libtool: link: ar cru .libs/libvolume_io2.a volume_io/Geometry/colour.o volume_io/Geometry/colour_def.o volume_io/Geometry/gaussian.o volume_io/Geometry/inverse.o volume_io/Geometry/newton.o volume_io/Geometry/points.o volume_io/Geometry/splines.o volume_io/Geometry/tensors.o volume_io/Geometry/transforms.o volume_io/MNI_formats/gen_xf_io.o volume_io/MNI_formats/gen_xfs.o volume_io/MNI_formats/grid_transforms.o volume_io/MNI_formats/mni_io.o volume_io/MNI_formats/tag_points.o volume_io/MNI_formats/thin_plate_spline.o volume_io/Prog_utils/alloc.o volume_io/Prog_utils/alloc_check.o volume_io/Prog_utils/arrays.o volume_io/Prog_utils/files.o volume_io/Prog_utils/print.o volume_io/Prog_utils/progress.o volume_io/Prog_utils/string.o volume_io/Prog_utils/time.o volume_io/Volumes/evaluate.o volume_io/Volumes/get_hyperslab.o volume_io/Volumes/input_free.o volume_io/Volumes/input_mnc.o volume_io/Volumes/input_volume.o volume_io/Volumes/multidim_arrays.o volume_io/Volumes/output_mnc.o volume_io/Volumes/output_volume.o volume_io/Volumes/set_hyperslab.o volume_io/Volumes/volume_cache.o volume_io/Volumes/volumes.o libtool: link: ranlib .libs/libvolume_io2.a libtool: link: ( cd ".libs" && rm -f "libvolume_io2.la" && ln -s "../libvolume_io2.la" "libvolume_io2.la" ) /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/acr_io.lo conversion/Acr_nema/acr_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/acr_io.c -fPIC -DPIC -o conversion/Acr_nema/.libs/acr_io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/acr_io.c -o conversion/Acr_nema/acr_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/dicom_client_routines.lo conversion/Acr_nema/dicom_client_routines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/dicom_client_routines.c -fPIC -DPIC -o conversion/Acr_nema/.libs/dicom_client_routines.o conversion/Acr_nema/dicom_client_routines.c:481:42: warning: passing 'int *' to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] (char *) &sockbuflen, &sockoptlen) == 0) && ^~~~~~~~~~~ /usr/include/x86_64-linux-gnu/sys/socket.h:221:32: note: passing argument to parameter '__optlen' here socklen_t *__restrict __optlen) __THROW; ^ conversion/Acr_nema/dicom_client_routines.c:853:20: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((subitem == NULL)) continue; ~~~~~~~~^~~~~~~ conversion/Acr_nema/dicom_client_routines.c:853:20: note: remove extraneous parentheses around the comparison to silence this warning if ((subitem == NULL)) continue; ~ ^ ~ conversion/Acr_nema/dicom_client_routines.c:853:20: note: use '=' to turn this equality comparison into an assignment if ((subitem == NULL)) continue; ^~ = 2 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/dicom_client_routines.c -o conversion/Acr_nema/dicom_client_routines.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/dicom_network.lo conversion/Acr_nema/dicom_network.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/dicom_network.c -fPIC -DPIC -o conversion/Acr_nema/.libs/dicom_network.o conversion/Acr_nema/dicom_network.c:454:15: warning: 10 enumeration values not handled in switch: 'ACR_PROTOCOL_ERROR', 'ACR_OTHER_ERROR', 'ACR_ABNORMAL_END_OF_INPUT'... [-Wswitch] switch (status) { ^ conversion/Acr_nema/dicom_network.c:663:15: warning: 10 enumeration values not handled in switch: 'ACR_PROTOCOL_ERROR', 'ACR_OTHER_ERROR', 'ACR_ABNORMAL_END_OF_INPUT'... [-Wswitch] switch (status) { ^ 2 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/dicom_network.c -o conversion/Acr_nema/dicom_network.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/element.lo conversion/Acr_nema/element.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/element.c -fPIC -DPIC -o conversion/Acr_nema/.libs/element.o conversion/Acr_nema/element.c:980:41: warning: expression which evaluates to zero treated as a null pointer constant of type 'char *' [-Wnon-literal-null-conversion] ACR_VR_UNKNOWN, 0L, NULL); ^~~~~~~~~~~~~~ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/element.c -o conversion/Acr_nema/element.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/file_io.lo conversion/Acr_nema/file_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/file_io.c -fPIC -DPIC -o conversion/Acr_nema/.libs/file_io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/file_io.c -o conversion/Acr_nema/file_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/globals.lo conversion/Acr_nema/globals.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/globals.c -fPIC -DPIC -o conversion/Acr_nema/.libs/globals.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/globals.c -o conversion/Acr_nema/globals.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/group.lo conversion/Acr_nema/group.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/group.c -fPIC -DPIC -o conversion/Acr_nema/.libs/group.o conversion/Acr_nema/group.c:901:15: warning: 10 enumeration values not handled in switch: 'ACR_PROTOCOL_ERROR', 'ACR_OTHER_ERROR', 'ACR_ABNORMAL_END_OF_INPUT'... [-Wswitch] switch (status) { ^ 1 warning generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/group.c -o conversion/Acr_nema/group.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/message.lo conversion/Acr_nema/message.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/message.c -fPIC -DPIC -o conversion/Acr_nema/.libs/message.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/message.c -o conversion/Acr_nema/message.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/value_repr.lo conversion/Acr_nema/value_repr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/value_repr.c -fPIC -DPIC -o conversion/Acr_nema/.libs/value_repr.o conversion/Acr_nema/value_repr.c:213:17: warning: comparison of unsigned enum expression < 0 is always false [-Wtautological-compare] if ((vr_code < 0) || ~~~~~~~ ^ ~ conversion/Acr_nema/value_repr.c:306:21: warning: comparison of unsigned enum expression >= 0 is always true [-Wtautological-compare] return ((vr_code >= 0) && (vr_code < ACR_VR_NUM_TYPES)); ~~~~~~~ ^ ~ conversion/Acr_nema/value_repr.c:330:16: warning: comparison of unsigned enum expression >= 0 is always true [-Wtautological-compare] if (vr_code >= 0) { ~~~~~~~ ^ ~ 3 warnings generated. libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c conversion/Acr_nema/value_repr.c -o conversion/Acr_nema/value_repr.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o libacr_nema.la -rpath /usr/lib/x86_64-linux-gnu conversion/Acr_nema/acr_io.lo conversion/Acr_nema/dicom_client_routines.lo conversion/Acr_nema/dicom_network.lo conversion/Acr_nema/element.lo conversion/Acr_nema/file_io.lo conversion/Acr_nema/globals.lo conversion/Acr_nema/group.lo conversion/Acr_nema/message.lo conversion/Acr_nema/value_repr.lo -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -shared -fPIC -DPIC conversion/Acr_nema/.libs/acr_io.o conversion/Acr_nema/.libs/dicom_client_routines.o conversion/Acr_nema/.libs/dicom_network.o conversion/Acr_nema/.libs/element.o conversion/Acr_nema/.libs/file_io.o conversion/Acr_nema/.libs/globals.o conversion/Acr_nema/.libs/group.o conversion/Acr_nema/.libs/message.o conversion/Acr_nema/.libs/value_repr.o -lhdf5 -lz -lnetcdf -lm -O2 -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libacr_nema.so.3 -o .libs/libacr_nema.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libacr_nema.so.3" && ln -s "libacr_nema.so.3.0.0" "libacr_nema.so.3") libtool: link: (cd ".libs" && rm -f "libacr_nema.so" && ln -s "libacr_nema.so.3.0.0" "libacr_nema.so") libtool: link: ar cru .libs/libacr_nema.a conversion/Acr_nema/acr_io.o conversion/Acr_nema/dicom_client_routines.o conversion/Acr_nema/dicom_network.o conversion/Acr_nema/element.o conversion/Acr_nema/file_io.o conversion/Acr_nema/globals.o conversion/Acr_nema/group.o conversion/Acr_nema/message.o conversion/Acr_nema/value_repr.o libtool: link: ranlib .libs/libacr_nema.a libtool: link: ( cd ".libs" && rm -f "libacr_nema.la" && ln -s "../libacr_nema.la" "libacr_nema.la" ) gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/coordinates/voxeltoworld.o progs/coordinates/voxeltoworld.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o voxeltoworld progs/coordinates/voxeltoworld.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/voxeltoworld progs/coordinates/voxeltoworld.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/coordinates/worldtovoxel.o progs/coordinates/worldtovoxel.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o worldtovoxel progs/coordinates/worldtovoxel.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/worldtovoxel progs/coordinates/worldtovoxel.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minc_modify_header/minc_modify_header.o progs/minc_modify_header/minc_modify_header.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minc_modify_header progs/minc_modify_header/minc_modify_header.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minc_modify_header progs/minc_modify_header/minc_modify_header.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincaverage/mincaverage.o progs/mincaverage/mincaverage.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincaverage progs/mincaverage/mincaverage.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincaverage progs/mincaverage/mincaverage.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincblob/mincblob.o progs/mincblob/mincblob.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincblob progs/mincblob/mincblob.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincblob progs/mincblob/mincblob.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-minccalc.o `test -f 'progs/minccalc/minccalc.c' || echo './'`progs/minccalc/minccalc.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-gram.o `test -f 'progs/minccalc/gram.c' || echo './'`progs/minccalc/gram.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-eval.o `test -f 'progs/minccalc/eval.c' || echo './'`progs/minccalc/eval.c progs/minccalc/eval.c:141:18: warning: 20 enumeration values not handled in switch: 'NODETYPE_INDEX', 'NODETYPE_SUM', 'NODETYPE_PROD'... [-Wswitch] switch (n->type) { ^ 1 warning generated. gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-ident.o `test -f 'progs/minccalc/ident.c' || echo './'`progs/minccalc/ident.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-lex.o `test -f 'progs/minccalc/lex.c' || echo './'`progs/minccalc/lex.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-node.o `test -f 'progs/minccalc/node.c' || echo './'`progs/minccalc/node.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-optim.o `test -f 'progs/minccalc/optim.c' || echo './'`progs/minccalc/optim.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-scalar.o `test -f 'progs/minccalc/scalar.c' || echo './'`progs/minccalc/scalar.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-sym.o `test -f 'progs/minccalc/sym.c' || echo './'`progs/minccalc/sym.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccalc/minccalc-vector.o `test -f 'progs/minccalc/vector.c' || echo './'`progs/minccalc/vector.c /bin/bash ./libtool --tag=CC --mode=link gcc -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minccalc progs/minccalc/minccalc-minccalc.o progs/minccalc/minccalc-gram.o progs/minccalc/minccalc-eval.o progs/minccalc/minccalc-ident.o progs/minccalc/minccalc-lex.o progs/minccalc/minccalc-node.o progs/minccalc/minccalc-optim.o progs/minccalc/minccalc-scalar.o progs/minccalc/minccalc-sym.o progs/minccalc/minccalc-vector.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -Iprogs/minccalc -I./progs/minccalc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minccalc progs/minccalc/minccalc-minccalc.o progs/minccalc/minccalc-gram.o progs/minccalc/minccalc-eval.o progs/minccalc/minccalc-ident.o progs/minccalc/minccalc-lex.o progs/minccalc/minccalc-node.o progs/minccalc/minccalc-optim.o progs/minccalc/minccalc-scalar.o progs/minccalc/minccalc-sym.o progs/minccalc/minccalc-vector.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccmp/minccmp.o progs/minccmp/minccmp.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minccmp progs/minccmp/minccmp.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minccmp progs/minccmp/minccmp.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincconcat/mincconcat.o progs/mincconcat/mincconcat.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincconcat progs/mincconcat/mincconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincconcat progs/mincconcat/mincconcat.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minccopy/minccopy.o progs/minccopy/minccopy.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minccopy progs/minccopy/minccopy.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minccopy progs/minccopy/minccopy.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincexpand/mincexpand.o progs/mincexpand/mincexpand.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincexpand progs/mincexpand/mincexpand.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincexpand progs/mincexpand/mincexpand.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincextract/mincextract.o progs/mincextract/mincextract.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincextract progs/mincextract/mincextract.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincextract progs/mincextract/mincextract.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/escapes.o progs/mincgen/escapes.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/genlib.o progs/mincgen/genlib.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/getfill.o progs/mincgen/getfill.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/init.o progs/mincgen/init.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/load.o progs/mincgen/load.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/main.o progs/mincgen/main.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/ncgentab.o progs/mincgen/ncgentab.c progs/mincgen/ncgentab.c:1431:16: warning: implicit declaration of function 'yylex' is invalid in C99 [-Wimplicit-function-declaration] yychar = YYLEX; ^ progs/mincgen/ncgentab.c:786:16: note: expanded from macro 'YYLEX' # define YYLEX yylex () ^ progs/mincgen/ncgentab.c:2357:7: warning: implicit declaration of function 'yyerror' is invalid in C99 [-Wimplicit-function-declaration] yyerror (YY_("syntax error")); ^ 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincgen/ncgenyy.o progs/mincgen/ncgenyy.c ncgenyy.l:59:5: warning: implicit declaration of function 'yyerror' is invalid in C99 [-Wimplicit-function-declaration] yyerror("string too long, truncated\n"); ^ ncgenyy.l:131:17: warning: implicit declaration of function 'lookup' is invalid in C99 [-Wimplicit-function-declaration] if ((yylval = lookup((char *)yytext)) == YYLVAL_NULL) { ^ ncgenyy.l:132:13: warning: implicit declaration of function 'install' is invalid in C99 [-Wimplicit-function-declaration] yylval = install((char *)yytext); ^ 3 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincgen progs/mincgen/escapes.o progs/mincgen/genlib.o progs/mincgen/getfill.o progs/mincgen/init.o progs/mincgen/load.o progs/mincgen/main.o progs/mincgen/ncgentab.o progs/mincgen/ncgenyy.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincgen progs/mincgen/escapes.o progs/mincgen/genlib.o progs/mincgen/getfill.o progs/mincgen/init.o progs/mincgen/load.o progs/mincgen/main.o progs/mincgen/ncgentab.o progs/mincgen/ncgenyy.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincinfo/mincinfo.o progs/mincinfo/mincinfo.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincinfo progs/mincinfo/mincinfo.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincinfo progs/mincinfo/mincinfo.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minclookup/minclookup.o progs/minclookup/minclookup.c progs/minclookup/minclookup.c:325:15: warning: enumeration value 'LU_TABLE' not handled in switch [-Wswitch] switch (lookup_type) { ^ 1 warning generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minclookup progs/minclookup/minclookup.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minclookup progs/minclookup/minclookup.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincmakescalar/mincmakescalar.o progs/mincmakescalar/mincmakescalar.c progs/mincmakescalar/mincmakescalar.c:366:18: warning: enumeration value 'CONV_DEFAULT' not handled in switch [-Wswitch] switch (program_data->conversion_type) { ^ progs/mincmakescalar/mincmakescalar.c:385:18: warning: enumeration values 'CONV_DEFAULT', 'CONV_GREY', and 'CONV_LINEAR' not handled in switch [-Wswitch] switch (program_data->conversion_type) { ^ 2 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincmakescalar progs/mincmakescalar/mincmakescalar.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincmakescalar progs/mincmakescalar/mincmakescalar.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincmakevector/mincmakevector.o progs/mincmakevector/mincmakevector.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincmakevector progs/mincmakevector/mincmakevector.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincmakevector progs/mincmakevector/mincmakevector.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincmath/mincmath.o progs/mincmath/mincmath.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincmath progs/mincmath/mincmath.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincmath progs/mincmath/mincmath.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/mincmorph -I./progs/mincmorph -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincmorph/mincmorph-mincmorph.o `test -f 'progs/mincmorph/mincmorph.c' || echo './'`progs/mincmorph/mincmorph.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/mincmorph -I./progs/mincmorph -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincmorph/mincmorph-kernel_io.o `test -f 'progs/mincmorph/kernel_io.c' || echo './'`progs/mincmorph/kernel_io.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/mincmorph -I./progs/mincmorph -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincmorph/mincmorph-kernel_ops.o `test -f 'progs/mincmorph/kernel_ops.c' || echo './'`progs/mincmorph/kernel_ops.c /bin/bash ./libtool --tag=CC --mode=link gcc -Iprogs/mincmorph -I./progs/mincmorph -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincmorph progs/mincmorph/mincmorph-mincmorph.o progs/mincmorph/mincmorph-kernel_io.o progs/mincmorph/mincmorph-kernel_ops.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -Iprogs/mincmorph -I./progs/mincmorph -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincmorph progs/mincmorph/mincmorph-mincmorph.o progs/mincmorph/mincmorph-kernel_io.o progs/mincmorph/mincmorph-kernel_ops.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincresample/mincresample.o progs/mincresample/mincresample.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincresample/resample_volumes.o progs/mincresample/resample_volumes.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/Proglib/convert_origin_to_start.o progs/Proglib/convert_origin_to_start.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincresample progs/mincresample/mincresample.o progs/mincresample/resample_volumes.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincresample progs/mincresample/mincresample.o progs/mincresample/resample_volumes.o progs/Proglib/convert_origin_to_start.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincreshape/mincreshape.o progs/mincreshape/mincreshape.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincreshape/copy_data.o progs/mincreshape/copy_data.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincreshape progs/mincreshape/mincreshape.o progs/mincreshape/copy_data.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincreshape progs/mincreshape/mincreshape.o progs/mincreshape/copy_data.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/mincsample -I./progs/mincsample -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincsample/mincsample-mincsample.o `test -f 'progs/mincsample/mincsample.c' || echo './'`progs/mincsample/mincsample.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Iprogs/mincsample -I./progs/mincsample -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincsample/mincsample-mt19937ar.o `test -f 'progs/mincsample/mt19937ar.c' || echo './'`progs/mincsample/mt19937ar.c /bin/bash ./libtool --tag=CC --mode=link gcc -Iprogs/mincsample -I./progs/mincsample -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincsample progs/mincsample/mincsample-mincsample.o progs/mincsample/mincsample-mt19937ar.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -Iprogs/mincsample -I./progs/mincsample -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincsample progs/mincsample/mincsample-mincsample.o progs/mincsample/mincsample-mt19937ar.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincstats/mincstats.o progs/mincstats/mincstats.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincstats progs/mincstats/mincstats.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincstats progs/mincstats/mincstats.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/minctoraw/minctoraw.o progs/minctoraw/minctoraw.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minctoraw progs/minctoraw/minctoraw.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minctoraw progs/minctoraw/minctoraw.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincview/invert_raw_image.o progs/mincview/invert_raw_image.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o invert_raw_image progs/mincview/invert_raw_image.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/invert_raw_image progs/mincview/invert_raw_image.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincwindow/mincwindow.o progs/mincwindow/mincwindow.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincwindow progs/mincwindow/mincwindow.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincwindow progs/mincwindow/mincwindow.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/rawtominc/rawtominc.o progs/rawtominc/rawtominc.c progs/rawtominc/rawtominc.c:928:19: warning: implicit declaration of function 'swab' is invalid in C99 [-Wimplicit-function-declaration] swab(image, image, image_size); ^ 1 warning generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/xfm/transformtags.o progs/xfm/transformtags.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o transformtags progs/xfm/transformtags.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/transformtags progs/xfm/transformtags.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/xfm/xfm2def.o progs/xfm/xfm2def.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o xfm2def progs/xfm/xfm2def.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/xfm2def progs/xfm/xfm2def.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/xfm/xfmconcat.o progs/xfm/xfmconcat.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o xfmconcat progs/xfm/xfmconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/xfmconcat progs/xfm/xfmconcat.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/xfm/xfminvert.o progs/xfm/xfminvert.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o xfminvert progs/xfm/xfminvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/xfminvert progs/xfm/xfminvert.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincconvert/mincconvert.o progs/mincconvert/mincconvert.c progs/mincconvert/mincconvert.c:214:14: warning: implicit declaration of function 'micreatex' is invalid in C99 [-Wimplicit-function-declaration] new_fd = micreatex(new_fname, flags, &opts); ^ 1 warning generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincconvert progs/mincconvert/mincconvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincconvert progs/mincconvert/mincconvert.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincdump/mincdump.o progs/mincdump/mincdump.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincdump/vardata.o progs/mincdump/vardata.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincdump/dumplib.o progs/mincdump/dumplib.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/ecattominc/ecattominc.o conversion/ecattominc/ecattominc.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/ecattominc/insertblood.o conversion/ecattominc/insertblood.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/ecattominc/ecat_file.o conversion/ecattominc/ecat_file.c conversion/ecattominc/ecat_file.c:1025:7: warning: implicit declaration of function 'get_int32_value' is invalid in C99 [-Wimplicit-function-declaration] get_int32_value(&dirblock[offset], &value); ^ 1 warning generated. gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/ecattominc/machine_indep.o conversion/ecattominc/machine_indep.c conversion/ecattominc/machine_indep.c:20:22: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] *(short int *)to = ntohs(short_value); ^ conversion/ecattominc/machine_indep.c:27:21: warning: implicit declaration of function 'ntohl' is invalid in C99 [-Wimplicit-function-declaration] *(long int *)to = ntohl(long_value); ^ 2 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/minctoecat/minctoecat.o conversion/minctoecat/minctoecat.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/minctoecat/ecat_write.o conversion/minctoecat/ecat_write.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/minctoecat/machine_indep.o conversion/minctoecat/machine_indep.c conversion/minctoecat/machine_indep.c:28:6: warning: implicit declaration of function 'ntohs' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) swab(from, to, length); ^ conversion/minctoecat/machine_indep.c:28:21: warning: implicit declaration of function 'swab' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) swab(from, to, length); ^ conversion/minctoecat/machine_indep.c:41:21: warning: implicit declaration of function 'swaw' is invalid in C99 [-Wimplicit-function-declaration] if (ntohs(1) == 1) swaw((short*)from,to,length); ^ conversion/minctoecat/machine_indep.c:184:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] read_matrix_data( fptr, strtblk, nblks, dptr, dtype) ^ conversion/minctoecat/machine_indep.c:191:8: warning: implicit declaration of function 'mat_rblk' is invalid in C99 [-Wimplicit-function-declaration] err = mat_rblk( fptr, strtblk, dptr, nblks); ^ conversion/minctoecat/machine_indep.c:196:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] write_matrix_data( fptr, strtblk, nblks, dptr, dtype) ^ conversion/minctoecat/machine_indep.c:215:8: warning: implicit declaration of function 'mat_wblk' is invalid in C99 [-Wimplicit-function-declaration] if ( mat_wblk( fptr, strtblk, dptr, nblks) < 0) error_flag++; ^ conversion/minctoecat/machine_indep.c:240:33: warning: incompatible pointer types passing 'char *' to parameter of type 'unsigned short *' [-Wincompatible-pointer-types] ftovaxf(*((float*)&dptr[k]),&bufr2[j]); ^~~~~~~~~ 8 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/nifti1/mnc2nii.o conversion/nifti1/mnc2nii.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/nifti1/nifti1_io.o conversion/nifti1/nifti1_io.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/nifti1/znzlib.o conversion/nifti1/znzlib.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mnc2nii conversion/nifti1/mnc2nii.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mnc2nii conversion/nifti1/mnc2nii.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/nifti1/nii2mnc.o conversion/nifti1/nii2mnc.c conversion/nifti1/nii2mnc.c:220:13: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(&ana_hdr, sizeof (ana_hdr), 1, fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o nii2mnc conversion/nifti1/nii2mnc.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/nii2mnc conversion/nifti1/nii2mnc.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/micropet/upet2mnc.o conversion/micropet/upet2mnc.c conversion/micropet/upet2mnc.c:566:17: warning: implicit declaration of function 'isspace' is invalid in C99 [-Wimplicit-function-declaration] while (!isspace(*line_ptr)) { ^ conversion/micropet/upet2mnc.c:1077:12: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration] while (isdigit(*str_ptr)) { ^ 2 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o upet2mnc conversion/micropet/upet2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/upet2mnc conversion/micropet/upet2mnc.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dcm2mnc.c conversion/dcm2mnc/dcm2mnc.c:884:17: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fp, "%s", output_file_name); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ conversion/dcm2mnc/dcm2mnc.c:922:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(tst_str, 1, DICM_MAGIC_SIZE, fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ conversion/dcm2mnc/dcm2mnc.c:945:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3 warnings generated. gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/dicom_to_minc.c conversion/dcm2mnc/dicom_to_minc.c:777:14: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign] byte_ptr = element->data_pointer; ^ ~~~~~~~~~~~~~~~~~~~~~ conversion/dcm2mnc/dicom_to_minc.c:792:23: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] strncpy(name, (byte_ptr + byte_pos), 64); ^~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/string3.h:117:65: note: passing argument to parameter '__src' here __NTH (strncpy (char *__restrict __dest, const char *__restrict __src, ^ /usr/include/x86_64-linux-gnu/sys/cdefs.h:57:59: note: expanded from macro '__NTH' # define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct ^ conversion/dcm2mnc/dicom_to_minc.c:798:21: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] strncpy(vr, (byte_ptr + byte_pos), 4); ^~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/string3.h:117:65: note: passing argument to parameter '__src' here __NTH (strncpy (char *__restrict __dest, const char *__restrict __src, ^ /usr/include/x86_64-linux-gnu/sys/cdefs.h:57:59: note: expanded from macro '__NTH' # define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct ^ conversion/dcm2mnc/dicom_to_minc.c:820:30: warning: assigning to 'char *' from 'unsigned char *' converts between pointers to integer types with different sign [-Wpointer-sign] value[i] = (byte_ptr + byte_pos); ^ ~~~~~~~~~~~~~~~~~~~~~ conversion/dcm2mnc/dicom_to_minc.c:1050:2: warning: '/*' within block comment [-Wcomment] /* correct dynamic scan info if *MGH* diffusion scan: ^ conversion/dcm2mnc/dicom_to_minc.c:1414:9: warning: implicit declaration of function 'is_numaris3' is invalid in C99 [-Wimplicit-function-declaration] if (is_numaris3(group_list)) { ^ 6 warnings generated. gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/siemens_to_dicom.c conversion/dcm2mnc/siemens_to_dicom.c:218:61: warning: passing 'short *' to parameter of type 'Acr_Short *' (aka 'unsigned short *') converts between pointers to integer types with different sign [-Wpointer-sign] acr_get_short(ACR_BIG_ENDIAN, 1, &IMA_hdr.G28.Rows, &rows); ^~~~~ ./conversion/Acr_nema/acr_nema/acr_io.h:158:38: note: passing argument to parameter 'mach_value' here Acr_Short *mach_value); ^ conversion/dcm2mnc/siemens_to_dicom.c:219:64: warning: passing 'short *' to parameter of type 'Acr_Short *' (aka 'unsigned short *') converts between pointers to integer types with different sign [-Wpointer-sign] acr_get_short(ACR_BIG_ENDIAN, 1, &IMA_hdr.G28.Columns, &cols); ^~~~~ ./conversion/Acr_nema/acr_nema/acr_io.h:158:38: note: passing argument to parameter 'mach_value' here Acr_Short *mach_value); ^ conversion/dcm2mnc/siemens_to_dicom.c:649:15: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if ((hour < 0) || (hour >= 24)) ~~~~ ^ ~ conversion/dcm2mnc/siemens_to_dicom.c:651:17: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if ((minute < 0) || (minute >= 60)) ~~~~~~ ^ ~ conversion/dcm2mnc/siemens_to_dicom.c:653:17: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if ((second < 0) || (second >= 60)) ~~~~~~ ^ ~ conversion/dcm2mnc/siemens_to_dicom.c:655:15: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if ((msec < 0) || (msec > 999)) ~~~~ ^ ~ 6 warnings generated. gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/dicom_read.c conversion/dcm2mnc/dicom_read.c:808:17: warning: expression result unused [-Wunused-value] for(i;id_name != "." && np->d_name != "..") { ^ ~~~ conversion/vff2mnc/vff2mnc.c:1233:40: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if (np->d_name != "." && np->d_name != "..") { ^ ~~~~ 3 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o vff2mnc conversion/vff2mnc/vff2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/vff2mnc conversion/vff2mnc/vff2mnc.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/acr_test.o conversion/Acr_nema/acr_test.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o acr_test conversion/Acr_nema/acr_test.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/acr_test conversion/Acr_nema/acr_test.o ./.libs/libacr_nema.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/dump_acr_nema.o conversion/Acr_nema/dump_acr_nema.c conversion/Acr_nema/dump_acr_nema.c:218:33: warning: incompatible pointer types assigning to 'acr_name_proc_t' (aka 'char *(*)(unsigned int, unsigned int)') from 'char *(unsigned short, unsigned short)' [-Wincompatible-pointer-types] _acr_name_proc = get_name; ^ ~~~~~~~~ 1 warning generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o dump_acr_nema conversion/Acr_nema/dump_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/dump_acr_nema conversion/Acr_nema/dump_acr_nema.o ./.libs/libacr_nema.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/extract_acr_nema.o conversion/Acr_nema/extract_acr_nema.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o extract_acr_nema conversion/Acr_nema/extract_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/extract_acr_nema conversion/Acr_nema/extract_acr_nema.o ./.libs/libacr_nema.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/read_acr_nema.o conversion/Acr_nema/read_acr_nema.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o read_acr_nema conversion/Acr_nema/read_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/read_acr_nema conversion/Acr_nema/read_acr_nema.o ./.libs/libacr_nema.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/dicom_test.o conversion/Acr_nema/dicom_test.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o dicom_test conversion/Acr_nema/dicom_test.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/dicom_test conversion/Acr_nema/dicom_test.o ./.libs/libacr_nema.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/Acr_nema/copy_acr_nema.o conversion/Acr_nema/copy_acr_nema.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o copy_acr_nema conversion/Acr_nema/copy_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/copy_acr_nema conversion/Acr_nema/copy_acr_nema.o ./.libs/libacr_nema.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/image_filters/byte_swap.o conversion/image_filters/byte_swap.c conversion/image_filters/byte_swap.c:20:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] main() ^ 1 warning generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o byte_swap conversion/image_filters/byte_swap.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/byte_swap conversion/image_filters/byte_swap.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o conversion/image_filters/extract.o conversion/image_filters/extract.c conversion/image_filters/extract.c:32:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] main(int argc, char **argv) ^ conversion/image_filters/extract.c:41:23: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if ((argc > 0) && (strcmp(*argv,"-h") == 0)) { ^ conversion/image_filters/extract.c:41:23: note: include the header or explicitly provide a declaration for 'strcmp' 2 warnings generated. /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o extract conversion/image_filters/extract.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/extract conversion/image_filters/extract.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincexample/mincexample1.o progs/mincexample/mincexample1.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincexample1 progs/mincexample/mincexample1.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincexample1 progs/mincexample/mincexample1.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o progs/mincexample/mincexample2.o progs/mincexample/mincexample2.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincexample2 progs/mincexample/mincexample2.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincexample2 progs/mincexample/mincexample2.o ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm /usr/bin/pod2man --section=1 progs/minccomplete/minccomplete > progs/minccomplete/minccomplete.man1 /usr/bin/pod2man --section=1 progs/minchistory/minchistory > progs/minchistory/minchistory.man1 /usr/bin/pod2man --section=1 progs/mincpik/mincpik > progs/mincpik/mincpik.man1 make[3]: Leaving directory '/«PKGBUILDDIR»' Making all in volume_io make[3]: Entering directory '/«PKGBUILDDIR»/volume_io' Making all in Documentation make[4]: Entering directory '/«PKGBUILDDIR»/volume_io/Documentation' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/volume_io/Documentation' Making all in Testing make[4]: Entering directory '/«PKGBUILDDIR»/volume_io/Testing' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o example_modify.o example_modify.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o example_modify example_modify.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/example_modify example_modify.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o example_tags.o example_tags.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o example_tags example_tags.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/example_tags example_tags.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o example_volume_io.o example_volume_io.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o example_volume_io example_volume_io.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/example_volume_io example_volume_io.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm make[4]: Leaving directory '/«PKGBUILDDIR»/volume_io/Testing' make[4]: Entering directory '/«PKGBUILDDIR»/volume_io' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/volume_io' make[3]: Leaving directory '/«PKGBUILDDIR»/volume_io' Making all in testdir make[3]: Entering directory '/«PKGBUILDDIR»/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh make[3]: Leaving directory '/«PKGBUILDDIR»/testdir' Making all in doc make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc' Making all in libsrc2/test make[3]: Entering directory '/«PKGBUILDDIR»/libsrc2/test' cd . && chmod +x testminctools.sh make[3]: Leaving directory '/«PKGBUILDDIR»/libsrc2/test' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -a make[1]: Entering directory '/«PKGBUILDDIR»' Making check in . make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' Making check in volume_io make[2]: Entering directory '/«PKGBUILDDIR»/volume_io' Making check in Documentation make[3]: Entering directory '/«PKGBUILDDIR»/volume_io/Documentation' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/volume_io/Documentation' Making check in Testing make[3]: Entering directory '/«PKGBUILDDIR»/volume_io/Testing' make test-xfm make[4]: Entering directory '/«PKGBUILDDIR»/volume_io/Testing' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o test-xfm.o test-xfm.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o test-xfm test-xfm.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/test-xfm test-xfm.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm make[4]: Leaving directory '/«PKGBUILDDIR»/volume_io/Testing' make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/volume_io/Testing' make[5]: Entering directory '/«PKGBUILDDIR»/volume_io/Testing' PASS: check_xfm.sh make[6]: Entering directory '/«PKGBUILDDIR»/volume_io/Testing' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/volume_io/Testing' ============================================================================ Testsuite summary for minc 2.2.00 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/volume_io/Testing' make[4]: Leaving directory '/«PKGBUILDDIR»/volume_io/Testing' make[3]: Leaving directory '/«PKGBUILDDIR»/volume_io/Testing' make[3]: Entering directory '/«PKGBUILDDIR»/volume_io' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/volume_io' make[2]: Leaving directory '/«PKGBUILDDIR»/volume_io' Making check in testdir make[2]: Entering directory '/«PKGBUILDDIR»/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh make minc test_mconv minc_types icv icv_range icv_dim test_speed icv_dim1 icv_fillvalue test_xfm create_grid_xfm mincapi test_speed test_arg_parse make[3]: Entering directory '/«PKGBUILDDIR»/testdir' gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o minc.o minc.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minc minc.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minc minc.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o test_mconv.o test_mconv.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o test_mconv test_mconv.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/test_mconv test_mconv.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o minc_types.o minc_types.c minc_types.c:50:22: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (argc == 2 && !strcmp(argv[1], "-2")) { ^ minc_types.c:50:22: note: include the header or explicitly provide a declaration for 'strcmp' 1 warning generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o minc_types minc_types.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/minc_types minc_types.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o icv.o icv.c icv.c:42:22: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (argc == 2 && !strcmp(argv[1], "-2")) { ^ icv.c:42:22: note: include the header or explicitly provide a declaration for 'strcmp' 1 warning generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o icv icv.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/icv icv.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o icv_range.o icv_range.c icv_range.c:43:22: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (argc == 2 && !strcmp(argv[1], "-2")) { ^ icv_range.c:43:22: note: include the header or explicitly provide a declaration for 'strcmp' 1 warning generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o icv_range icv_range.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/icv_range icv_range.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o icv_dim.o icv_dim.c icv_dim.c:11:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] main(int argc, char **argv) ^ icv_dim.c:44:22: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (argc == 2 && !strcmp(argv[1], "-2")) { ^ icv_dim.c:44:22: note: include the header or explicitly provide a declaration for 'strcmp' 2 warnings generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o icv_dim icv_dim.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/icv_dim icv_dim.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o test_speed.o test_speed.c test_speed.c:99:16: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (!strcmp(signtype, MI_UNSIGNED)) { ^ test_speed.c:99:16: note: include the header or explicitly provide a declaration for 'strcmp' test_speed.c:204:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]) ^ 2 warnings generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o test_speed test_speed.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/test_speed test_speed.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o icv_dim1.o icv_dim1.c icv_dim1.c:44:22: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (argc == 2 && !strcmp(argv[1], "-2")) { ^ icv_dim1.c:44:22: note: include the header or explicitly provide a declaration for 'strcmp' 1 warning generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o icv_dim1 icv_dim1.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/icv_dim1 icv_dim1.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o icv_fillvalue.o icv_fillvalue.c icv_fillvalue.c:35:22: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' if (argc == 2 && !strcmp(argv[1], "-2")) { ^ icv_fillvalue.c:35:22: note: include the header or explicitly provide a declaration for 'strcmp' 1 warning generated. /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o icv_fillvalue icv_fillvalue.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/icv_fillvalue icv_fillvalue.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o test_xfm.o test_xfm.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o test_xfm test_xfm.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/test_xfm test_xfm.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o create_grid_xfm.o create_grid_xfm.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o create_grid_xfm create_grid_xfm.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/create_grid_xfm create_grid_xfm.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o mincapi.o mincapi.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o mincapi mincapi.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/mincapi mincapi.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm make[3]: 'test_speed' is up to date. gcc -DHAVE_CONFIG_H -I. -I.. -I../libsrc -I../volume_io/Include -I../volume_io/Include -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o test_arg_parse.o test_arg_parse.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o test_arg_parse test_arg_parse.o ../libvolume_io2.la ../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/test_arg_parse test_arg_parse.o ../.libs/libvolume_io2.so ../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm make[3]: Leaving directory '/«PKGBUILDDIR»/testdir' make check-TESTS make[3]: Entering directory '/«PKGBUILDDIR»/testdir' make[4]: Entering directory '/«PKGBUILDDIR»/testdir' PASS: run_test_arg_parse.sh PASS: run_tests.sh PASS: run_test2.sh PASS: xfmconcat_01.sh PASS: xfmconcat_02.sh PASS: mincapi PASS: run_test_progs.sh make[5]: Entering directory '/«PKGBUILDDIR»/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh make[5]: Leaving directory '/«PKGBUILDDIR»/testdir' ============================================================================ Testsuite summary for minc 2.2.00 ============================================================================ # TOTAL: 7 # PASS: 7 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/«PKGBUILDDIR»/testdir' make[3]: Leaving directory '/«PKGBUILDDIR»/testdir' make[2]: Leaving directory '/«PKGBUILDDIR»/testdir' Making check in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making check in libsrc2/test make[2]: Entering directory '/«PKGBUILDDIR»/libsrc2/test' cd . && chmod +x testminctools.sh make create-test-images create-test-images-2 datatype-test dimension-test full-test grpattr-test hyper-test hyper-test-2 label-test record-test slice-test valid-test volprops-test multires-test convert-test vector_dimension-test make[3]: Entering directory '/«PKGBUILDDIR»/libsrc2/test' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o create-test-images.o create-test-images.c create-test-images.c:59:56: warning: passing 'long [2]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_SHORT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ create-test-images.c:59:63: warning: passing 'long [2]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_SHORT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ create-test-images.c:62:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ create-test-images.c:105:59: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_USHORT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ create-test-images.c:105:66: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_USHORT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ create-test-images.c:112:34: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_slice_range(hvol,start,NDIMS , max, min); ^~~~~ ../../libsrc2/minc2.h:393:29: note: passing argument to parameter 'start_positions' here const unsigned long start_positions[], ^ create-test-images.c:116:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ create-test-images.c:163:58: warning: passing 'long [4]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_UBYTE, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ create-test-images.c:163:65: warning: passing 'long [4]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_UBYTE, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ create-test-images.c:174:29: warning: passing 'long [4]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_slice_range(hvol,start,NDIMS+1 , max, min); ^~~~~ ../../libsrc2/minc2.h:393:29: note: passing argument to parameter 'start_positions' here const unsigned long start_positions[], ^ create-test-images.c:179:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ 11 warnings generated. /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o create-test-images create-test-images.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/create-test-images create-test-images.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o create-test-images-2.o create-test-images-2.c create-test-images-2.c:60:56: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_INT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ create-test-images-2.c:60:63: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_INT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ create-test-images-2.c:67:34: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_slice_range(hvol,start,NDIMS , max, min); ^~~~~ ../../libsrc2/minc2.h:393:29: note: passing argument to parameter 'start_positions' here const unsigned long start_positions[], ^ create-test-images-2.c:71:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ create-test-images-2.c:114:58: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_FLOAT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ create-test-images-2.c:114:65: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_FLOAT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ create-test-images-2.c:121:34: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_slice_range(hvol,start,NDIMS , max, min); ^~~~~ ../../libsrc2/minc2.h:393:29: note: passing argument to parameter 'start_positions' here const unsigned long start_positions[], ^ create-test-images-2.c:125:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ 8 warnings generated. /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o create-test-images-2 create-test-images-2.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/create-test-images-2 create-test-images-2.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o datatype-test.o datatype-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o datatype-test datatype-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/datatype-test datatype-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o dimension-test.o dimension-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o dimension-test dimension-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/dimension-test dimension-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o full-test.o full-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o full-test full-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/full-test full-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o grpattr-test.o grpattr-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o grpattr-test grpattr-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/grpattr-test grpattr-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hyper-test.o hyper-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o hyper-test hyper-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/hyper-test hyper-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hyper-test-2.o hyper-test-2.c hyper-test-2.c:69:59: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_USHORT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ hyper-test-2.c:69:66: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_voxel_value_hyperslab(hvol, MI_TYPE_USHORT, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ hyper-test-2.c:76:34: warning: passing 'long [3]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] r = miset_slice_range(hvol,start, 3, max, min); ^~~~~ ../../libsrc2/minc2.h:393:29: note: passing argument to parameter 'start_positions' here const unsigned long start_positions[], ^ 3 warnings generated. /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o hyper-test-2 hyper-test-2.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/hyper-test-2 hyper-test-2.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o label-test.o label-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o label-test label-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/label-test label-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o record-test.o record-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o record-test record-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/record-test record-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o slice-test.o slice-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o slice-test slice-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/slice-test slice-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o valid-test.o valid-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o valid-test valid-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/valid-test valid-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o volprops-test.o volprops-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o volprops-test volprops-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/volprops-test volprops-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o multires-test.o multires-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o multires-test multires-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/multires-test multires-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o convert-test.o convert-test.c /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o convert-test convert-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/convert-test convert-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vector_dimension-test.o vector_dimension-test.c vector_dimension-test.c:52:53: warning: passing 'long [4]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] miset_voxel_value_hyperslab(hvol, MI_TYPE_BYTE, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:451:60: note: passing argument to parameter 'start' here const unsigned long start[], ^ vector_dimension-test.c:52:60: warning: passing 'long [4]' to parameter of type 'const unsigned long *' converts between pointers to integer types with different sign [-Wpointer-sign] miset_voxel_value_hyperslab(hvol, MI_TYPE_BYTE, start, count, buf); ^~~~~ ../../libsrc2/minc2.h:452:60: note: passing argument to parameter 'count' here const unsigned long count[], ^ 2 warnings generated. /bin/bash ../../libtool --tag=CC --mode=link gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o vector_dimension-test vector_dimension-test.o ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -DAPPARENTORDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -o .libs/vector_dimension-test vector_dimension-test.o ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm make[3]: Leaving directory '/«PKGBUILDDIR»/libsrc2/test' make check-TESTS make[3]: Entering directory '/«PKGBUILDDIR»/libsrc2/test' make[4]: Entering directory '/«PKGBUILDDIR»/libsrc2/test' FAIL: create-test-images FAIL: create-test-images-2 PASS: datatype-test PASS: dimension-test PASS: full-test PASS: grpattr-test PASS: hyper-test PASS: hyper-test-2 PASS: label-test PASS: record-test PASS: slice-test PASS: valid-test PASS: volprops-test PASS: multires-test PASS: convert-test PASS: vector_dimension-test PASS: testminctools.sh make[5]: Entering directory '/«PKGBUILDDIR»/libsrc2/test' cd . && chmod +x testminctools.sh make[5]: Leaving directory '/«PKGBUILDDIR»/libsrc2/test' ============================================================================ Testsuite summary for minc 2.2.00 ============================================================================ # TOTAL: 17 # PASS: 15 # SKIP: 0 # XFAIL: 0 # FAIL: 2 make[4]: *** [test-suite.log] Error 1 # XPASS: 0 # ERROR: 0 ============================================================================ See libsrc2/test/test-suite.log Please report to a.janke@gmail.com ============================================================================ Makefile:822: recipe for target 'test-suite.log' failed make[4]: Leaving directory '/«PKGBUILDDIR»/libsrc2/test' make[3]: *** [check-TESTS] Error 2 Makefile:928: recipe for target 'check-TESTS' failed make[3]: Leaving directory '/«PKGBUILDDIR»/libsrc2/test' make[2]: *** [check-am] Error 2 Makefile:1113: recipe for target 'check-am' failed make[2]: Leaving directory '/«PKGBUILDDIR»/libsrc2/test' make[1]: *** [check-recursive] Error 1 Makefile:3059: recipe for target 'check-recursive' failed make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test: make -j1 check returned exit code 2 make: *** [build-arch] Error 2 debian/rules:4: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150326-0752 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 109680 Build-Time: 175 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 39 Job: minc_2.2.00-6 Machine Architecture: amd64 Package: minc Package-Time: 242 Source-Version: 2.2.00-6 Space: 109680 Status: attempted Version: 2.2.00-6 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150326-0752 Build needed 00:04:02, 109680k disc space DC-Status: Failed 243.00803362s DC-Time-Estimation: 243.00803362 versus expected 775 (r/m: 2.1891949762117497 ; m: 243.00803362)