DC-Build-Header: pymol 1.7.2.1-1 / 2015-03-26 04:12:01 +0000 DC-Task: source:pymol version:1.7.2.1-1 architecture:any chroot:unstable esttime:1131 logfile:/tmp/pymol_1.7.2.1-1_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang pymol_1.7.2.1-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-4-233.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ pymol 1.7.2.1-1 (amd64) 26 Mar 2015 04:12 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: pymol Version: 1.7.2.1-1 Source Version: 1.7.2.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/pymol-8Aw98q/pymol-1.7.2.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/pymol-8Aw98q' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-051d695b-479f-4a3b-9502-120f3375372b' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [257 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2015-03-25-1448.37.pdiff [3021 B] Get:6 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [5545 B] Get:7 http://localhost:9999 unstable/main 2015-03-26-0248.39.pdiff [3389 B] Get:8 http://localhost:9999 unstable/main 2015-03-26-0248.39.pdiff [3389 B] Get:9 http://localhost:9999 unstable/main amd64 2015-03-25-1448.37.pdiff [4095 B] Get:10 http://localhost:9999 unstable/main amd64 2015-03-25-2049.47.pdiff [4595 B] Get:11 http://localhost:9999 unstable/main amd64 2015-03-26-0248.39.pdiff [3173 B] Get:12 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Get:13 http://localhost:9999 unstable/main amd64 2015-03-26-0248.39.pdiff [3173 B] Get:14 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Fetched 306 kB in 5s (52.8 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'pymol' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debichem/unstable/pymol/ Need to get 8793 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main pymol 1.7.2.1-1 (dsc) [2028 B] Get:2 http://localhost:9999/debian/ unstable/main pymol 1.7.2.1-1 (tar) [8745 kB] Get:3 http://localhost:9999/debian/ unstable/main pymol 1.7.2.1-1 (diff) [45.2 kB] Fetched 8793 kB in 0s (18.6 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/clang ────────── + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.6 + echo 'Install of clang-3.6' Install of clang-3.6 + apt-get update Hit http://localhost:9999 unstable InRelease Get:1 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:2 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Fetched 23.6 kB in 1s (12.7 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.6 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.6-doc Recommended packages: llvm-3.6-dev python The following NEW packages will be installed: clang-3.6 libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.1-2+b2 [20.1 kB] Get:4 http://localhost:9999/debian/ unstable/main libllvm3.6 amd64 1:3.6-2 [8137 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.9.2-10 [112 kB] Get:6 http://localhost:9999/debian/ unstable/main libobjc-4.9-dev amd64 4.9.2-10 [372 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.6 amd64 1:3.6-2 [3839 kB] Get:8 http://localhost:9999/debian/ unstable/main libclang-common-3.6-dev amd64 1:3.6-2 [706 kB] Get:9 http://localhost:9999/debian/ unstable/main clang-3.6 amd64 1:3.6-2 [25.8 MB] debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 39.2 MB in 1s (38.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11980 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+b2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+b2) ... Selecting previously unselected package libllvm3.6:amd64. Preparing to unpack .../libllvm3.6_1%3a3.6-2_amd64.deb ... Unpacking libllvm3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.2-10_amd64.deb ... Unpacking libobjc4:amd64 (4.9.2-10) ... Selecting previously unselected package libobjc-4.9-dev:amd64. Preparing to unpack .../libobjc-4.9-dev_4.9.2-10_amd64.deb ... Unpacking libobjc-4.9-dev:amd64 (4.9.2-10) ... Selecting previously unselected package libclang1-3.6:amd64. Preparing to unpack .../libclang1-3.6_1%3a3.6-2_amd64.deb ... Unpacking libclang1-3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libclang-common-3.6-dev. Preparing to unpack .../libclang-common-3.6-dev_1%3a3.6-2_amd64.deb ... Unpacking libclang-common-3.6-dev (1:3.6-2) ... Selecting previously unselected package clang-3.6. Preparing to unpack .../clang-3.6_1%3a3.6-2_amd64.deb ... Unpacking clang-3.6 (1:3.6-2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libffi6:amd64 (3.1-2+b2) ... Setting up libllvm3.6:amd64 (1:3.6-2) ... Setting up libobjc4:amd64 (4.9.2-10) ... Setting up libobjc-4.9-dev:amd64 (4.9.2-10) ... Setting up libclang1-3.6:amd64 (1:3.6-2) ... Setting up libclang-common-3.6-dev (1:3.6-2) ... Setting up clang-3.6 (1:3.6-2) ... Processing triggers for libc-bin (2.19-17) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.6 g++-4.6 + ln -s clang-3.6 gcc-4.6 + ln -s clang-3.6 cpp-4.6 + ln -s clang-3.6 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.6 g++-4.7 + ln -s clang-3.6 gcc-4.7 + ln -s clang-3.6 cpp-4.7 + ln -s clang-3.6 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.6 g++-4.8 + ln -s clang-3.6 gcc-4.8 + ln -s clang-3.6 cpp-4.8 + ln -s clang-3.6 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.6 g++-4.9 + ln -s clang-3.6 gcc-4.9 + ln -s clang-3.6 cpp-4.9 + ln -s clang-3.6 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections + echo 'g++-4.9 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.6 g++-5 + ln -s clang-3.6 gcc-5 + ln -s clang-3.6 cpp-5 + ln -s clang-3.6 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + cd - /«BUILDDIR» + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-DZ75_I/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/816 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>> 7.0.50~), freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libpng12-0-dev, python, python-dev, python-numpy, python-support (>= 0.4), texlive-latex-base, tk-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>> 7.0.50~), freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libpng12-0-dev, python, python-dev, python-numpy, python-support (>= 0.4), texlive-latex-base, tk-dev dpkg-deb: building package `sbuild-build-depends-pymol-dummy' in `/«BUILDDIR»/resolver-odR02A/apt_archive/sbuild-build-depends-pymol-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install pymol build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file fontconfig-config fonts-dejavu-core freeglut3 freeglut3-dev gettext gettext-base groff-base intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew-dev libglew1.10 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice-dev libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libmagic1 libnettle4 libopenjpeg5 libp11-kit0 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpoppler46 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsm-dev libsm6 libsqlite3-0 libssl1.0.0 libsynctex1 libtasn1-6 libtcl8.6 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxml2 libxmu6 libxpm4 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libzzip-0-13 man-db mesa-common-dev mime-support pkg-config po-debconf poppler-data python python-dev python-minimal python-numpy python-support python2.7 python2.7-dev python2.7-minimal tcl tcl-dev tcl8.6 tcl8.6-dev tex-common texlive-base texlive-binaries texlive-latex-base tk tk-dev tk8.6 tk8.6-dev ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff cups-common glew-utils gnutls-bin krb5-doc krb5-user libice-doc libjasper-runtime liblcms2-utils pciutils libsm-doc libxcb-doc libxext-doc libxt-doc www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python2.7-doc binfmt-support tcl-doc tcl-tclreadline tcl8.6-doc perl-tk gv postscript-viewer xpdf-reader pdf-viewer tk-doc tk8.6-doc gvfs-bin Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev dbus libgl1-mesa-dri libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid krb5-locales libx11-doc xml-core libmail-sendmail-perl lmodern ruby wish texlive-latex-base-doc xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bsdmainutils debhelper file fontconfig-config fonts-dejavu-core freeglut3 freeglut3-dev gettext gettext-base groff-base intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew-dev libglew1.10 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls-deb0-28 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhogweed2 libice-dev libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libmagic1 libnettle4 libopenjpeg5 libp11-kit0 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpoppler46 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsm-dev libsm6 libsqlite3-0 libssl1.0.0 libsynctex1 libtasn1-6 libtcl8.6 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxml2 libxmu6 libxpm4 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libzzip-0-13 man-db mesa-common-dev mime-support pkg-config po-debconf poppler-data python python-dev python-minimal python-numpy python-support python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-pymol-dummy tcl tcl-dev tcl8.6 tcl8.6-dev tex-common texlive-base texlive-binaries texlive-latex-base tk tk-dev tk8.6 tk8.6-dev ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 194 newly installed, 0 to remove and 0 not upgraded. Need to get 99.6 MB/99.6 MB of archives. After this operation, 319 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.4.0-1 [27.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libssl1.0.0 amd64 1.0.1k-3 [1037 kB] Get:3 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.3-1 [1205 kB] Get:4 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.6 [183 kB] Get:5 http://localhost:9999/debian/ unstable/main man-db amd64 2.7.0.2-5 [1000 kB] Get:6 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.19.3-2 [31.3 kB] Get:7 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-5 [176 kB] Get:8 http://localhost:9999/debian/ unstable/main libhogweed2 amd64 2.7.1-5 [125 kB] Get:9 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:10 http://localhost:9999/debian/ unstable/main libtasn1-6 amd64 4.2-2 [48.6 kB] Get:11 http://localhost:9999/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.8-6 [694 kB] Get:12 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:13 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.12.1+dfsg-19 [58.5 kB] Get:14 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.12.1+dfsg-19 [115 kB] Get:15 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.12.1+dfsg-19 [303 kB] Get:16 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19 [150 kB] Get:17 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.29-1+b2 [136 kB] Get:18 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.22+15-2 [249 kB] Get:19 http://localhost:9999/debian/ unstable/main libsqlite3-0 amd64 3.8.7.4-1 [439 kB] Get:20 http://localhost:9999/debian/ unstable/main libicu52 amd64 52.1-8 [6780 kB] Get:21 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.2+dfsg1-3 [934 kB] Get:22 http://localhost:9999/debian/ unstable/main libpython2.7-minimal amd64 2.7.9-2 [376 kB] Get:23 http://localhost:9999/debian/ unstable/main python2.7-minimal amd64 2.7.9-2 [1401 kB] Get:24 http://localhost:9999/debian/ unstable/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:25 http://localhost:9999/debian/ unstable/main mime-support all 3.58 [36.0 kB] Get:26 http://localhost:9999/debian/ unstable/main libexpat1 amd64 2.1.0-6+b3 [80.3 kB] Get:27 http://localhost:9999/debian/ unstable/main libpython2.7-stdlib amd64 2.7.9-2 [1844 kB] Get:28 http://localhost:9999/debian/ unstable/main python2.7 amd64 2.7.9-2 [251 kB] Get:29 http://localhost:9999/debian/ unstable/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:30 http://localhost:9999/debian/ unstable/main python amd64 2.7.9-1 [151 kB] Get:31 http://localhost:9999/debian/ unstable/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:32 http://localhost:9999/debian/ unstable/main libglapi-mesa amd64 10.4.2-2 [54.3 kB] Get:33 http://localhost:9999/debian/ unstable/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:34 http://localhost:9999/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:35 http://localhost:9999/debian/ unstable/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:36 http://localhost:9999/debian/ unstable/main libx11-data all 2:1.6.2-3 [126 kB] Get:37 http://localhost:9999/debian/ unstable/main libx11-6 amd64 2:1.6.2-3 [729 kB] Get:38 http://localhost:9999/debian/ unstable/main libx11-xcb1 amd64 2:1.6.2-3 [163 kB] Get:39 http://localhost:9999/debian/ unstable/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:40 http://localhost:9999/debian/ unstable/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:41 http://localhost:9999/debian/ unstable/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:42 http://localhost:9999/debian/ unstable/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:43 http://localhost:9999/debian/ unstable/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:44 http://localhost:9999/debian/ unstable/main libxfixes3 amd64 1:5.0.1-2+b2 [21.3 kB] Get:45 http://localhost:9999/debian/ unstable/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:46 http://localhost:9999/debian/ unstable/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:47 http://localhost:9999/debian/ unstable/main libxshmfence1 amd64 1.1-4 [6736 B] Get:48 http://localhost:9999/debian/ unstable/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:49 http://localhost:9999/debian/ unstable/main libgl1-mesa-glx amd64 10.4.2-2 [181 kB] Get:50 http://localhost:9999/debian/ unstable/main libxi6 amd64 2:1.7.4-1+b2 [79.7 kB] Get:51 http://localhost:9999/debian/ unstable/main freeglut3 amd64 2.8.1-2 [124 kB] Get:52 http://localhost:9999/debian/ unstable/main libavahi-common-data amd64 0.6.31-4+b2 [98.7 kB] Get:53 http://localhost:9999/debian/ unstable/main libavahi-common3 amd64 0.6.31-4+b2 [51.2 kB] Get:54 http://localhost:9999/debian/ unstable/main libdbus-1-3 amd64 1.8.16-1 [169 kB] Get:55 http://localhost:9999/debian/ unstable/main libavahi-client3 amd64 0.6.31-4+b2 [54.5 kB] Get:56 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.42.1-1 [2401 kB] Get:57 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:58 http://localhost:9999/debian/ unstable/main libcups2 amd64 1.7.5-11 [283 kB] Get:59 http://localhost:9999/debian/ unstable/main libcupsimage2 amd64 1.7.5-11 [116 kB] Get:60 http://localhost:9999/debian/ unstable/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:61 http://localhost:9999/debian/ unstable/main libpng12-0 amd64 1.2.50-2+b2 [172 kB] Get:62 http://localhost:9999/debian/ unstable/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:63 http://localhost:9999/debian/ unstable/main libtiff5 amd64 4.0.3-12.3 [217 kB] Get:64 http://localhost:9999/debian/ unstable/main libcupsfilters1 amd64 1.0.61-5 [106 kB] Get:65 http://localhost:9999/debian/ unstable/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:66 http://localhost:9999/debian/ unstable/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:67 http://localhost:9999/debian/ unstable/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:68 http://localhost:9999/debian/ unstable/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:69 http://localhost:9999/debian/ unstable/main libfreetype6 amd64 2.5.2-4 [466 kB] Get:70 http://localhost:9999/debian/ unstable/main ucf all 3.0030 [69.7 kB] Get:71 http://localhost:9999/debian/ unstable/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:72 http://localhost:9999/debian/ unstable/main fontconfig-config all 2.11.0-6.3 [273 kB] Get:73 http://localhost:9999/debian/ unstable/main libfontconfig1 amd64 2.11.0-6.3 [329 kB] Get:74 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.9.2-10 [255 kB] Get:75 http://localhost:9999/debian/ unstable/main x11-common all 1:7.7+7 [287 kB] Get:76 http://localhost:9999/debian/ unstable/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:77 http://localhost:9999/debian/ unstable/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:78 http://localhost:9999/debian/ unstable/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:79 http://localhost:9999/debian/ unstable/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:80 http://localhost:9999/debian/ unstable/main libglew1.10 amd64 1.10.0-3 [139 kB] Get:81 http://localhost:9999/debian/ unstable/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:82 http://localhost:9999/debian/ unstable/main libgraphite2-3 amd64 1.2.4-3 [57.4 kB] Get:83 http://localhost:9999/debian/ unstable/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:84 http://localhost:9999/debian/ unstable/main libharfbuzz-icu0 amd64 0.9.35-2 [360 kB] Get:85 http://localhost:9999/debian/ unstable/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:86 http://localhost:9999/debian/ unstable/main libjasper1 amd64 1.900.1-debian1-2.4 [133 kB] Get:87 http://localhost:9999/debian/ unstable/main liblcms2-2 amd64 2.6-3+b3 [141 kB] Get:88 http://localhost:9999/debian/ unstable/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:89 http://localhost:9999/debian/ unstable/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:90 http://localhost:9999/debian/ unstable/main libopenjpeg5 amd64 1:1.5.2-3 [111 kB] Get:91 http://localhost:9999/debian/ unstable/main libpoppler46 amd64 0.26.5-2 [1210 kB] Get:92 http://localhost:9999/debian/ unstable/main libpython2.7 amd64 2.7.9-2 [1080 kB] Get:93 http://localhost:9999/debian/ unstable/main libexpat1-dev amd64 2.1.0-6+b3 [126 kB] Get:94 http://localhost:9999/debian/ unstable/main libpython2.7-dev amd64 2.7.9-2 [18.6 MB] Get:95 http://localhost:9999/debian/ unstable/main libtcl8.6 amd64 8.6.2+dfsg-2 [978 kB] Get:96 http://localhost:9999/debian/ unstable/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:97 http://localhost:9999/debian/ unstable/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:98 http://localhost:9999/debian/ unstable/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:99 http://localhost:9999/debian/ unstable/main libtk8.6 amd64 8.6.2-1 [771 kB] Get:100 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:101 http://localhost:9999/debian/ unstable/main libxpm4 amd64 1:3.5.11-1+b1 [48.1 kB] Get:102 http://localhost:9999/debian/ unstable/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:103 http://localhost:9999/debian/ unstable/main libxcb-randr0 amd64 1.10-3+b1 [20.9 kB] Get:104 http://localhost:9999/debian/ unstable/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:105 http://localhost:9999/debian/ unstable/main libxcb-shape0 amd64 1.10-3+b1 [11.6 kB] Get:106 http://localhost:9999/debian/ unstable/main libxcb-xfixes0 amd64 1.10-3+b1 [14.9 kB] Get:107 http://localhost:9999/debian/ unstable/main libzzip-0-13 amd64 0.13.62-3 [55.5 kB] Get:108 http://localhost:9999/debian/ unstable/main poppler-data all 0.4.7-1 [1491 kB] Get:109 http://localhost:9999/debian/ unstable/main file amd64 1:5.22+15-2 [60.1 kB] Get:110 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.19.3-2 [121 kB] Get:111 http://localhost:9999/debian/ unstable/main python-support all 1.0.15 [33.6 kB] Get:112 http://localhost:9999/debian/ unstable/main gettext amd64 0.19.3-2 [1240 kB] Get:113 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:114 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu3 [220 kB] Get:115 http://localhost:9999/debian/ unstable/main debhelper all 9.20150101 [813 kB] Get:116 http://localhost:9999/debian/ unstable/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:117 http://localhost:9999/debian/ unstable/main x11proto-core-dev all 7.0.26-1 [729 kB] Get:118 http://localhost:9999/debian/ unstable/main libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:119 http://localhost:9999/debian/ unstable/main libxdmcp-dev amd64 1:1.1.1-1+b1 [40.2 kB] Get:120 http://localhost:9999/debian/ unstable/main x11proto-input-dev all 2.3.1-1 [157 kB] Get:121 http://localhost:9999/debian/ unstable/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:122 http://localhost:9999/debian/ unstable/main xtrans-dev all 1.3.5-1 [100 kB] Get:123 http://localhost:9999/debian/ unstable/main libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:124 http://localhost:9999/debian/ unstable/main libxcb1-dev amd64 1.10-3+b1 [83.8 kB] Get:125 http://localhost:9999/debian/ unstable/main libx11-dev amd64 2:1.6.2-3 [800 kB] Get:126 http://localhost:9999/debian/ unstable/main libdrm-dev amd64 2.4.58-2 [181 kB] Get:127 http://localhost:9999/debian/ unstable/main mesa-common-dev amd64 10.4.2-2 [326 kB] Get:128 http://localhost:9999/debian/ unstable/main libx11-xcb-dev amd64 2:1.6.2-3 [165 kB] Get:129 http://localhost:9999/debian/ unstable/main libxcb-dri3-dev amd64 1.10-3+b1 [11.8 kB] Get:130 http://localhost:9999/debian/ unstable/main libxcb-render0-dev amd64 1.10-3+b1 [22.8 kB] Get:131 http://localhost:9999/debian/ unstable/main libxcb-randr0-dev amd64 1.10-3+b1 [26.8 kB] Get:132 http://localhost:9999/debian/ unstable/main libxcb-shape0-dev amd64 1.10-3+b1 [13.1 kB] Get:133 http://localhost:9999/debian/ unstable/main libxcb-xfixes0-dev amd64 1.10-3+b1 [18.1 kB] Get:134 http://localhost:9999/debian/ unstable/main libxcb-sync-dev amd64 1.10-3+b1 [16.7 kB] Get:135 http://localhost:9999/debian/ unstable/main libxcb-present-dev amd64 1.10-3+b1 [12.8 kB] Get:136 http://localhost:9999/debian/ unstable/main libxshmfence-dev amd64 1.1-4 [6124 B] Get:137 http://localhost:9999/debian/ unstable/main libxcb-dri2-0-dev amd64 1.10-3+b1 [15.0 kB] Get:138 http://localhost:9999/debian/ unstable/main libxcb-glx0-dev amd64 1.10-3+b1 [37.8 kB] Get:139 http://localhost:9999/debian/ unstable/main x11proto-xext-dev all 7.3.0-1 [212 kB] Get:140 http://localhost:9999/debian/ unstable/main x11proto-fixes-dev all 1:5.0-2 [19.2 kB] Get:141 http://localhost:9999/debian/ unstable/main libxfixes-dev amd64 1:5.0.1-2+b2 [23.2 kB] Get:142 http://localhost:9999/debian/ unstable/main x11proto-damage-dev all 1:1.2.1-2 [11.8 kB] Get:143 http://localhost:9999/debian/ unstable/main libxdamage-dev amd64 1:1.1.4-2+b1 [14.4 kB] Get:144 http://localhost:9999/debian/ unstable/main libxext-dev amd64 2:1.3.3-1 [107 kB] Get:145 http://localhost:9999/debian/ unstable/main x11proto-xf86vidmode-dev all 2.3.1-2 [6114 B] Get:146 http://localhost:9999/debian/ unstable/main libxxf86vm-dev amd64 1:1.1.3-1+b1 [24.0 kB] Get:147 http://localhost:9999/debian/ unstable/main x11proto-dri2-dev all 2.8-2 [18.2 kB] Get:148 http://localhost:9999/debian/ unstable/main x11proto-gl-dev all 1.4.17-1 [28.0 kB] Get:149 http://localhost:9999/debian/ unstable/main libgl1-mesa-dev amd64 10.4.2-2 [38.2 kB] Get:150 http://localhost:9999/debian/ unstable/main libglu1-mesa-dev amd64 9.0.0-2 [198 kB] Get:151 http://localhost:9999/debian/ unstable/main libice-dev amd64 2:1.0.9-1+b1 [66.3 kB] Get:152 http://localhost:9999/debian/ unstable/main libsm-dev amd64 2:1.2.2-1+b1 [35.8 kB] Get:153 http://localhost:9999/debian/ unstable/main libxt-dev amd64 1:1.1.4-1+b1 [421 kB] Get:154 http://localhost:9999/debian/ unstable/main freeglut3-dev amd64 2.8.1-2 [177 kB] Get:155 http://localhost:9999/debian/ unstable/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:156 http://localhost:9999/debian/ unstable/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:157 http://localhost:9999/debian/ unstable/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:158 http://localhost:9999/debian/ unstable/main libpng12-dev amd64 1.2.50-2+b2 [248 kB] Get:159 http://localhost:9999/debian/ unstable/main libfreetype6-dev amd64 2.5.2-4 [640 kB] Get:160 http://localhost:9999/debian/ unstable/main pkg-config amd64 0.28-1 [57.5 kB] Get:161 http://localhost:9999/debian/ unstable/main libfontconfig1-dev amd64 2.11.0-6.3 [896 kB] Get:162 http://localhost:9999/debian/ unstable/main libglew-dev amd64 1.10.0-3 [114 kB] Get:163 http://localhost:9999/debian/ unstable/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:164 http://localhost:9999/debian/ unstable/main libgs9-common all 9.06~dfsg-2 [1979 kB] Get:165 http://localhost:9999/debian/ unstable/main libgs9 amd64 9.06~dfsg-2 [1914 kB] Get:166 http://localhost:9999/debian/ unstable/main libkpathsea6 amd64 2014.20140926.35254-6 [154 kB] Get:167 http://localhost:9999/debian/ unstable/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:168 http://localhost:9999/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:169 http://localhost:9999/debian/ unstable/main libpotrace0 amd64 1.11-2 [24.4 kB] Get:170 http://localhost:9999/debian/ unstable/main libptexenc1 amd64 2014.20140926.35254-6 [54.1 kB] Get:171 http://localhost:9999/debian/ unstable/main libpython-dev amd64 2.7.9-1 [19.6 kB] Get:172 http://localhost:9999/debian/ unstable/main libsynctex1 amd64 2014.20140926.35254-6 [61.1 kB] Get:173 http://localhost:9999/debian/ unstable/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:174 http://localhost:9999/debian/ unstable/main libxrender-dev amd64 1:0.9.8-1+b1 [38.9 kB] Get:175 http://localhost:9999/debian/ unstable/main libxft-dev amd64 2.3.2-1 [66.6 kB] Get:176 http://localhost:9999/debian/ unstable/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:177 http://localhost:9999/debian/ unstable/main libxss-dev amd64 1:1.2.2-1 [22.8 kB] Get:178 http://localhost:9999/debian/ unstable/main python2.7-dev amd64 2.7.9-2 [276 kB] Get:179 http://localhost:9999/debian/ unstable/main python-dev amd64 2.7.9-1 [1182 B] Get:180 http://localhost:9999/debian/ unstable/main python-numpy amd64 1:1.8.2-2 [1630 kB] Get:181 http://localhost:9999/debian/ unstable/main tcl8.6 amd64 8.6.2+dfsg-2 [122 kB] Get:182 http://localhost:9999/debian/ unstable/main tcl amd64 8.6.0+8 [5366 B] Get:183 http://localhost:9999/debian/ unstable/main tcl8.6-dev amd64 8.6.2+dfsg-2 [990 kB] Get:184 http://localhost:9999/debian/ unstable/main tcl-dev amd64 8.6.0+8 [7716 B] Get:185 http://localhost:9999/debian/ unstable/main tex-common all 5.03 [625 kB] Get:186 http://localhost:9999/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB] Get:187 http://localhost:9999/debian/ unstable/main texlive-binaries amd64 2014.20140926.35254-6 [6782 kB] Get:188 http://localhost:9999/debian/ unstable/main texlive-base all 2014.20141024-2 [17.7 MB] Get:189 http://localhost:9999/debian/ unstable/main texlive-latex-base all 2014.20141024-2 [858 kB] Get:190 http://localhost:9999/debian/ unstable/main tk8.6 amd64 8.6.2-1 [71.1 kB] Get:191 http://localhost:9999/debian/ unstable/main tk amd64 8.6.0+8 [5388 B] Get:192 http://localhost:9999/debian/ unstable/main tk8.6-dev amd64 8.6.2-1 [745 kB] Get:193 http://localhost:9999/debian/ unstable/main tk-dev amd64 8.6.0+8 [5174 B] Extracting templates from packages: 15% Extracting templates from packages: 30% Extracting templates from packages: 46% Extracting templates from packages: 61% Extracting templates from packages: 77% Extracting templates from packages: 92% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 99.6 MB in 3s (25.0 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.4.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.0-1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1k-3_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1k-3) ... 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Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.6:amd64 (8.6.2-1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libxpm4:amd64 (1:3.5.11-1+b1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxcb-randr0:amd64 (1.10-3+b1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shape0:amd64 (1.10-3+b1) ... Setting up libxcb-xfixes0:amd64 (1.10-3+b1) ... Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up poppler-data (0.4.7-1) ... Setting up file (1:5.22+15-2) ... Setting up gettext-base (0.19.3-2) ... Setting up python-support (1.0.15) ... Setting up gettext (0.19.3-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up debhelper (9.20150101) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up x11proto-core-dev (7.0.26-1) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1+b1) ... Setting up x11proto-input-dev (2.3.1-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up libxcb1-dev:amd64 (1.10-3+b1) ... Setting up libx11-dev:amd64 (2:1.6.2-3) ... Setting up libdrm-dev:amd64 (2.4.58-2) ... Setting up mesa-common-dev:amd64 (10.4.2-2) ... Setting up libx11-xcb-dev:amd64 (2:1.6.2-3) ... Setting up libxcb-dri3-dev:amd64 (1.10-3+b1) ... Setting up libxcb-render0-dev:amd64 (1.10-3+b1) ... Setting up libxcb-randr0-dev:amd64 (1.10-3+b1) ... Setting up libxcb-shape0-dev:amd64 (1.10-3+b1) ... Setting up libxcb-xfixes0-dev:amd64 (1.10-3+b1) ... Setting up libxcb-sync-dev:amd64 (1.10-3+b1) ... Setting up libxcb-present-dev:amd64 (1.10-3+b1) ... Setting up libxshmfence-dev:amd64 (1.1-4) ... Setting up libxcb-dri2-0-dev:amd64 (1.10-3+b1) ... Setting up libxcb-glx0-dev:amd64 (1.10-3+b1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up x11proto-fixes-dev (1:5.0-2) ... Setting up libxfixes-dev:amd64 (1:5.0.1-2+b2) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxdamage-dev:amd64 (1:1.1.4-2+b1) ... Setting up libxext-dev:amd64 (2:1.3.3-1) ... Setting up x11proto-xf86vidmode-dev (2.3.1-2) ... Setting up libxxf86vm-dev:amd64 (1:1.1.3-1+b1) ... Setting up x11proto-dri2-dev (2.8-2) ... Setting up x11proto-gl-dev (1.4.17-1) ... Setting up libgl1-mesa-dev:amd64 (10.4.2-2) ... Setting up libglu1-mesa-dev (9.0.0-2) ... Setting up libice-dev:amd64 (2:1.0.9-1+b1) ... Setting up libsm-dev:amd64 (2:1.2.2-1+b1) ... Setting up libxt-dev:amd64 (1:1.1.4-1+b1) ... Setting up freeglut3-dev:amd64 (2.8.1-2) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng12-dev:amd64 (1.2.50-2+b2) ... Setting up libfreetype6-dev (2.5.2-4) ... Setting up pkg-config (0.28-1) ... Setting up libfontconfig1-dev:amd64 (2.11.0-6.3) ... Setting up libglew-dev:amd64 (1.10.0-3) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.06~dfsg-2) ... Setting up libkpathsea6 (2014.20140926.35254-6) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpotrace0 (1.11-2) ... Setting up libptexenc1 (2014.20140926.35254-6) ... Setting up libpython-dev:amd64 (2.7.9-1) ... Setting up libsynctex1 (2014.20140926.35254-6) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev:amd64 (1:0.9.8-1+b1) ... Setting up libxft-dev (2.3.2-1) ... Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libxss-dev:amd64 (1:1.2.2-1) ... Setting up python2.7-dev (2.7.9-2) ... Setting up python-dev (2.7.9-1) ... Setting up python-numpy (1:1.8.2-2) ... Setting up tcl8.6 (8.6.2+dfsg-2) ... Setting up tcl (8.6.0+8) ... Setting up tcl8.6-dev:amd64 (8.6.2+dfsg-2) ... Setting up tcl-dev:amd64 (8.6.0+8) ... Setting up tex-common (5.03) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ... Setting up tk8.6 (8.6.2-1) ... Setting up tk (8.6.0+8) ... Setting up tk8.6-dev:amd64 (8.6.2-1) ... Setting up tk-dev:amd64 (8.6.0+8) ... Setting up libcupsimage2:amd64 (1.7.5-11) ... Setting up libcupsfilters1:amd64 (1.0.61-5) ... Setting up libgs9 (9.06~dfsg-2) ... Setting up texlive-binaries (2014.20140926.35254-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2014.20141024-2) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2014.20141024-2) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-pymol-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-17) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.24 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-17 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt7-1 Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.7 apt-utils_1.0.9.7 base-files_8 base-passwd_3.5.37 bash_4.3-12 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-5 build-essential_11.7 bzip2_1.0.6-7+b2 clang-3.6_1:3.6-2 coreutils_8.23-4 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4+b1 debconf_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debian-archive-keyring_2014.3 debianutils_4.4+b1 diffutils_1:3.3-1+b1 dmsetup_2:1.02.90-2.1 dpkg_1.17.24 dpkg-dev_1.17.24 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 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python2.7-minimal_2.7.9-2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pymol-dummy_0.invalid.0 sed_4.2.2-4+b1 sensible-utils_0.0.9 startpar_0.59-3 sudo_1.8.12-1 systemd_215-12 systemd-sysv_215-12 sysv-rc_2.88dsf-58 sysvinit-utils_2.88dsf-58 tar_1.27.1-2+b1 tcl_8.6.0+8 tcl-dev_8.6.0+8 tcl8.6_8.6.2+dfsg-2 tcl8.6-dev_8.6.2+dfsg-2 tex-common_5.03 texlive-base_2014.20141024-2 texlive-binaries_2014.20140926.35254-6 texlive-latex-base_2014.20141024-2 tk_8.6.0+8 tk-dev_8.6.0+8 tk8.6_8.6.2-1 tk8.6-dev_8.6.2-1 tzdata_2015b-1 ucf_3.0030 udev_215-12 util-linux_2.25.2-5 x11-common_1:7.7+7 x11proto-core-dev_7.0.26-1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.6-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xdg-utils_1.1.0~rc1+git20111210-7.4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.1.1alpha+20120614-2+b3 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Sep 14 14:46:54 2014 UTC using RSA key ID B43481B0 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./pymol_1.7.2.1-1.dsc dpkg-source: info: extracting pymol in pymol-1.7.2.1 dpkg-source: info: unpacking pymol_1.7.2.1.orig.tar.bz2 dpkg-source: info: unpacking pymol_1.7.2.1-1.debian.tar.xz dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 21_fix_png_batch_mode.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 29_fix_path_to_splash.patch dpkg-source: info: applying 31_fix_format-security.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-051d695b-479f-4a3b-9502-120f3375372b SCHROOT_UID=1001 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package pymol dpkg-buildpackage: source version 1.7.2.1-1 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Michael Banck dpkg-source --before-build pymol-1.7.2.1 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' [ ! -f Makefile ] || /usr/bin/make distclean dh_auto_clean -Spython_distutils running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_clean make[1]: Entering directory '/«PKGBUILDDIR»' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --with python2 --parallel dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure -Spython_distutils make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build -Spython_distutils running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/web copying modules/web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/web copying modules/web/__init__.py -> build/lib.linux-x86_64-2.7/web copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/make_cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 creating build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/__init__.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Vector.c -o build/temp.linux-x86_64-2.7/layer0/Vector.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVContext.c -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/ov_utility.c -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Feedback.c -o build/temp.linux-x86_64-2.7/layer0/Feedback.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Field.c -o build/temp.linux-x86_64-2.7/layer0/Field.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVRandom.c -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeap.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Match.c -o build/temp.linux-x86_64-2.7/layer0/Match.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Sphere.c -o build/temp.linux-x86_64-2.7/layer0/Sphere.o -ffast-math -funroll-loops -O3 -fcommon layer0/Sphere.c:34:20: warning: unused variable 'start_points' [-Wunused-const-variable] static const float start_points[13][3] = { ^ layer0/Sphere.c:49:18: warning: unused variable 'icosahedron' [-Wunused-const-variable] static const int icosahedron[21][3] = { ^ 2 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Pixmap.c -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Deferred.c -o build/temp.linux-x86_64-2.7/layer0/Deferred.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Matrix.c -o build/temp.linux-x86_64-2.7/layer0/Matrix.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Util.c -o build/temp.linux-x86_64-2.7/layer0/Util.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryCache.c -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Queue.c -o build/temp.linux-x86_64-2.7/layer0/Queue.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Texture.c -o build/temp.linux-x86_64-2.7/layer0/Texture.o -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Map.c -o build/temp.linux-x86_64-2.7/layer0/Map.o -ffast-math -funroll-loops -O3 -fcommon layer0/Map.c:246:3: error: unterminated function-like macro invocation PRINTFD(G, FB_Map) ^ layer0/Feedback.h:268:66: note: expanded from macro 'PRINTFD' #define PRINTFD(G,sysmod) {if(Feedback(G,sysmod,FB_Debugging)) { fprintf(stderr, ^ /usr/include/x86_64-linux-gnu/bits/stdio2.h:109:11: note: macro 'fprintf' defined here # define fprintf(stream, ...) \ ^ layer0/Map.c:1047:2: error: expected '}' } ^ layer0/Map.c:246:3: note: to match this '{' PRINTFD(G, FB_Map) ^ layer0/Feedback.h:268:64: note: expanded from macro 'PRINTFD' #define PRINTFD(G,sysmod) {if(Feedback(G,sysmod,FB_Debugging)) { fprintf(stderr, ^ layer0/Map.c:1047:2: error: expected '}' } ^ layer0/Map.c:246:3: note: to match this '{' PRINTFD(G, FB_Map) ^ layer0/Feedback.h:268:27: note: expanded from macro 'PRINTFD' #define PRINTFD(G,sysmod) {if(Feedback(G,sysmod,FB_Debugging)) { fprintf(stderr, ^ layer0/Map.c:1047:2: error: expected '}' } ^ layer0/Map.c:237:1: note: to match this '{' { /* setup a list of XY neighbors for each square */ ^ 4 errors generated. error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o -ffast-math -funroll-loops -O3 -fcommon dh_auto_build: python setup.py build --force returned exit code 1 make[1]: *** [override_dh_auto_build] Error 1 debian/rules:17: recipe for target 'override_dh_auto_build' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [build-arch] Error 2 debian/rules:11: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150326-0413 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 46756 Build-Time: 7 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 44 Job: pymol_1.7.2.1-1 Machine Architecture: amd64 Package: pymol Package-Time: 80 Source-Version: 1.7.2.1-1 Space: 46756 Status: attempted Version: 1.7.2.1-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150326-0413 Build needed 00:01:20, 46756k disc space DC-Status: Failed 80.693986784s DC-Time-Estimation: 80.693986784 versus expected 1131 (r/m: 13.015914259230211 ; m: 80.693986784)