DC-Build-Header: autodock-vina 1.1.2-3 / 2016-08-29 16:21:40 +0000 DC-Task: type:rebuild-binarch-only source:autodock-vina version:1.1.2-3 chroot:unstable esttime:542 logfile:/tmp/autodock-vina_1.1.2-3_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang autodock-vina_1.1.2-3' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-3-116.eu-central-1.compute.internal +==============================================================================+ | autodock-vina 1.1.2-3 (amd64) Mon, 29 Aug 2016 16:21:40 +0000 | +==============================================================================+ Package: autodock-vina Version: 1.1.2-3 Source Version: 1.1.2-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-51905a10-4b67-46c1-9e93-7dbc70c5fa1c' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 2s (1990 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 0s (96.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/autodock-vina-LDzjJR + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (70.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'autodock-vina' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/autodock-vina/trunk/ Need to get 76.6 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main autodock-vina 1.1.2-3 (dsc) [1483 B] Get:2 http://127.0.0.1:9999/debian unstable/main autodock-vina 1.1.2-3 (tar) [69.5 kB] Get:3 http://127.0.0.1:9999/debian unstable/main autodock-vina 1.1.2-3 (diff) [5628 B] Fetched 76.6 kB in 0s (636 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/autodock-vina-LDzjJR/autodock-vina-1.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/autodock-vina-LDzjJR' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ui6y9x/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-ui6y9x/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ui6y9x/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-ui6y9x/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ui6y9x/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-ui6y9x/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 774 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ui6y9x/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 774 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), libboost-all-dev Filtered Build-Depends: debhelper (>= 9), libboost-all-dev dpkg-deb: building package 'sbuild-build-depends-autodock-vina-dummy' in '/<>/resolver-geaUYe/apt_archive/sbuild-build-depends-autodock-vina-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-autodock-vina-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-geaUYe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-geaUYe/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-geaUYe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-geaUYe/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-geaUYe/apt_archive ./ Packages [445 B] Fetched 1761 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install autodock-vina build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-all-dev libboost-atomic-dev libboost-atomic1.61-dev libboost-atomic1.61.0 libboost-chrono-dev libboost-chrono1.61-dev libboost-chrono1.61.0 libboost-context-dev libboost-context1.61-dev libboost-context1.61.0 libboost-coroutine-dev libboost-coroutine1.61-dev libboost-coroutine1.61.0 libboost-date-time-dev libboost-date-time1.61-dev libboost-date-time1.61.0 libboost-dev libboost-exception-dev libboost-exception1.61-dev libboost-filesystem-dev libboost-filesystem1.61-dev libboost-filesystem1.61.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.61-dev libboost-graph-parallel1.61.0 libboost-graph1.61-dev libboost-graph1.61.0 libboost-iostreams-dev libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-locale-dev libboost-locale1.61-dev libboost-locale1.61.0 libboost-log-dev libboost-log1.61-dev libboost-log1.61.0 libboost-math-dev libboost-math1.61-dev libboost-math1.61.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.61-dev libboost-mpi-python1.61.0 libboost-mpi1.61-dev libboost-mpi1.61.0 libboost-program-options-dev libboost-program-options1.61-dev libboost-program-options1.61.0 libboost-python-dev libboost-python1.61-dev libboost-python1.61.0 libboost-random-dev libboost-random1.61-dev libboost-random1.61.0 libboost-regex-dev libboost-regex1.61-dev libboost-regex1.61.0 libboost-serialization-dev libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-signals-dev libboost-signals1.61-dev libboost-signals1.61.0 libboost-system-dev libboost-system1.61-dev libboost-system1.61.0 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost-thread-dev libboost-thread1.61-dev libboost-thread1.61.0 libboost-timer-dev libboost-timer1.61-dev libboost-timer1.61.0 libboost-tools-dev libboost-wave-dev libboost-wave1.61-dev libboost-wave1.61.0 libboost1.61-dev libboost1.61-tools-dev libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline6 libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc graphviz libboost1.61-doc gccxml libmpfrc++-dev libntl-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop libhwloc-contrib-plugins icu-doc libtool-doc opennmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk less www-browser opencl-icd gfortran libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc readline-doc Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-all-dev libboost-atomic-dev libboost-atomic1.61-dev libboost-atomic1.61.0 libboost-chrono-dev libboost-chrono1.61-dev libboost-chrono1.61.0 libboost-context-dev libboost-context1.61-dev libboost-context1.61.0 libboost-coroutine-dev libboost-coroutine1.61-dev libboost-coroutine1.61.0 libboost-date-time-dev libboost-date-time1.61-dev libboost-date-time1.61.0 libboost-dev libboost-exception-dev libboost-exception1.61-dev libboost-filesystem-dev libboost-filesystem1.61-dev libboost-filesystem1.61.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.61-dev libboost-graph-parallel1.61.0 libboost-graph1.61-dev libboost-graph1.61.0 libboost-iostreams-dev libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-locale-dev libboost-locale1.61-dev libboost-locale1.61.0 libboost-log-dev libboost-log1.61-dev libboost-log1.61.0 libboost-math-dev libboost-math1.61-dev libboost-math1.61.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.61-dev libboost-mpi-python1.61.0 libboost-mpi1.61-dev libboost-mpi1.61.0 libboost-program-options-dev libboost-program-options1.61-dev libboost-program-options1.61.0 libboost-python-dev libboost-python1.61-dev libboost-python1.61.0 libboost-random-dev libboost-random1.61-dev libboost-random1.61.0 libboost-regex-dev libboost-regex1.61-dev libboost-regex1.61.0 libboost-serialization-dev libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-signals-dev libboost-signals1.61-dev libboost-signals1.61.0 libboost-system-dev libboost-system1.61-dev libboost-system1.61.0 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost-thread-dev libboost-thread1.61-dev libboost-thread1.61.0 libboost-timer-dev libboost-timer1.61-dev libboost-timer1.61.0 libboost-tools-dev libboost-wave-dev libboost-wave1.61-dev libboost-wave1.61.0 libboost1.61-dev libboost1.61-tools-dev libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline6 libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common sbuild-build-depends-autodock-vina-dummy 0 upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 136 MB of archives. After this operation, 507 MB of additional disk space will be used. Get:1 copy:/<>/resolver-geaUYe/apt_archive ./ sbuild-build-depends-autodock-vina-dummy 0.invalid.0 [792 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.12-2 [387 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.12-2 [1348 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.11-2 [40.3 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 6.3-8 [57.7 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6 amd64 6.3-8+b4 [142 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.14.1-1 [559 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.12-2 [1875 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.12-2 [277 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.11-2 [19.8 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.11-2 [153 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.2-3 [568 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.2-3 [1644 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.1-4 [35.3 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.2-3 [2126 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.2-3 [214 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.1-4 [18.6 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20160818 [83.0 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.1-4 [21.6 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-3 [172 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.61-dev amd64 1.61.0+dfsg-2.1 [6843 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.61.0.2 [3746 B] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.61-tools-dev amd64 1.61.0+dfsg-2.1 [1156 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libboost-tools-dev amd64 1.61.0.2 [3570 B] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.61.0 amd64 1.61.0+dfsg-2.1 [30.2 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.61-dev amd64 1.61.0+dfsg-2.1 [29.0 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic-dev amd64 1.61.0.2 [3698 B] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.61.0 amd64 1.61.0+dfsg-2.1 [32.1 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.61.0 amd64 1.61.0+dfsg-2.1 [35.8 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.61-dev amd64 1.61.0+dfsg-2.1 [36.0 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono-dev amd64 1.61.0.2 [4020 B] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libboost-context1.61.0 amd64 1.61.0+dfsg-2.1 [31.1 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libboost-context1.61-dev amd64 1.61.0+dfsg-2.1 [30.2 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libboost-context-dev amd64 1.61.0.2 [3594 B] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.61.0 amd64 1.61.0+dfsg-2.1 [71.2 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libboost-coroutine1.61.0 amd64 1.61.0+dfsg-2.1 [43.7 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libboost-coroutine1.61-dev amd64 1.61.0+dfsg-2.1 [44.1 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libboost-coroutine-dev amd64 1.61.0.2 [3658 B] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.61.0 amd64 1.61.0+dfsg-2.1 [42.6 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.61.0 amd64 1.61.0+dfsg-2.1 [125 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.61-dev amd64 1.61.0+dfsg-2.1 [160 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.61-dev amd64 1.61.0+dfsg-2.1 [49.6 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time-dev amd64 1.61.0.2 [3394 B] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost-exception1.61-dev amd64 1.61.0+dfsg-2.1 [28.5 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libboost-exception-dev amd64 1.61.0.2 [3380 B] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.61.0 amd64 1.61.0+dfsg-2.1 [62.9 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.61-dev amd64 1.61.0+dfsg-2.1 [32.7 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.61-dev amd64 1.61.0+dfsg-2.1 [71.0 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem-dev amd64 1.61.0.2 [3426 B] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.61.0 amd64 1.61.0+dfsg-2.1 [288 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph1.61.0 amd64 1.61.0+dfsg-2.1 [118 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.61.0 amd64 1.61.0+dfsg-2.1 [34.2 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.61.0 amd64 1.61.0+dfsg-2.1 [226 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.61-dev amd64 1.61.0+dfsg-2.1 [262 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph1.61-dev amd64 1.61.0+dfsg-2.1 [124 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-dev amd64 1.61.0.2 [3486 B] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.2.0-1 [264 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-1 [32.5 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.3-2 [104 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-1 [61.4 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-1 [135 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 1.2.0-2 [37.7 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1 [49.8 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.9-1 [36.1 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.3-2 [16.0 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi1.10 amd64 1.10.3-3 [2109 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi1.61.0 amd64 1.61.0+dfsg-2.1 [70.4 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-parallel1.61.0 amd64 1.61.0+dfsg-2.1 [86.0 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-parallel1.61-dev amd64 1.61.0+dfsg-2.1 [87.7 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-parallel-dev amd64 1.61.0.2 [3522 B] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-3 [16.3 MB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.61-dev amd64 1.61.0+dfsg-2.1 [331 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.61.0 amd64 1.61.0+dfsg-2.1 [50.5 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.61-dev amd64 1.61.0+dfsg-2.1 [56.2 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams-dev amd64 1.61.0.2 [3382 B] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libboost-locale1.61.0 amd64 1.61.0+dfsg-2.1 [263 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libboost-locale1.61-dev amd64 1.61.0+dfsg-2.1 [332 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libboost-locale-dev amd64 1.61.0.2 [3728 B] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libboost-log1.61.0 amd64 1.61.0+dfsg-2.1 [377 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.61-dev amd64 1.61.0+dfsg-2.1 [70.0 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libboost-log1.61-dev amd64 1.61.0+dfsg-2.1 [504 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libboost-log-dev amd64 1.61.0.2 [3588 B] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libboost-math1.61.0 amd64 1.61.0+dfsg-2.1 [319 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libboost-math1.61-dev amd64 1.61.0+dfsg-2.1 [758 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libboost-math-dev amd64 1.61.0.2 [3590 B] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 1.10.3-3 [143 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 1.2.0-2 [93.7 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-1 [45.5 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.3-2 [161 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 1.10.3-3 [628 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-dev amd64 1.7 [4786 B] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi1.61-dev amd64 1.61.0+dfsg-2.1 [152 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-dev amd64 1.61.0.2 [3470 B] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.61.0 amd64 1.61.0+dfsg-2.1 [137 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-bin amd64 1.10.3-3 [193 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-bin amd64 1.7 [3982 B] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-python1.61.0 amd64 1.61.0+dfsg-2.1 [231 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-python1.61-dev amd64 1.61.0+dfsg-2.1 [47.7 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-python-dev amd64 1.61.0.2 [3516 B] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.61.0 amd64 1.61.0+dfsg-2.1 [159 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.61-dev amd64 1.61.0+dfsg-2.1 [179 kB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options-dev amd64 1.61.0.2 [3404 B] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.12-2 [1070 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.0-1 [128 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.12-2 [28.1 MB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.11-2 [19.8 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.12-2 [281 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.11-2 [1128 B] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5 amd64 3.5.2-3 [1368 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-dev amd64 3.5.2-3 [37.6 MB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-dev amd64 3.5.1-4 [18.7 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-dev amd64 3.5.2-3 [413 kB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 python3-dev amd64 3.5.1-4 [1152 B] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.61-dev amd64 1.61.0+dfsg-2.1 [163 kB] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python-dev amd64 1.61.0.2 [3776 B] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 libboost-random1.61.0 amd64 1.61.0+dfsg-2.1 [35.2 kB] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 libboost-random1.61-dev amd64 1.61.0+dfsg-2.1 [34.3 kB] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 libboost-random-dev amd64 1.61.0.2 [3392 B] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex-dev amd64 1.61.0.2 [3646 B] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization-dev amd64 1.61.0.2 [3614 B] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 libboost-signals1.61.0 amd64 1.61.0+dfsg-2.1 [53.7 kB] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 libboost-signals1.61-dev amd64 1.61.0+dfsg-2.1 [57.1 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 libboost-signals-dev amd64 1.61.0.2 [3450 B] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system-dev amd64 1.61.0.2 [3530 B] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test-dev amd64 1.61.0.2 [3432 B] Get:161 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread-dev amd64 1.61.0.2 [3412 B] Get:162 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.61-dev amd64 1.61.0+dfsg-2.1 [33.6 kB] Get:163 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer-dev amd64 1.61.0.2 [3506 B] Get:164 http://127.0.0.1:9999/debian unstable/main amd64 libboost-wave1.61.0 amd64 1.61.0+dfsg-2.1 [203 kB] Get:165 http://127.0.0.1:9999/debian unstable/main amd64 libboost-wave1.61-dev amd64 1.61.0+dfsg-2.1 [246 kB] Get:166 http://127.0.0.1:9999/debian unstable/main amd64 libboost-wave-dev amd64 1.61.0.2 [3420 B] Get:167 http://127.0.0.1:9999/debian unstable/main amd64 libboost-all-dev amd64 1.61.0.2 [3712 B] debconf: delaying package configuration, since apt-utils is not installed 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Setting up libpython2.7-dev:amd64 (2.7.12-2) ... Setting up libboost-test-dev:amd64 (1.61.0.2) ... Setting up libboost-coroutine-dev:amd64 (1.61.0.2) ... Setting up python3.5-dev (3.5.2-3) ... Setting up python2.7-dev (2.7.12-2) ... Setting up libibverbs-dev (1.2.0-2) ... Setting up python (2.7.11-2) ... Setting up libpython3-dev:amd64 (3.5.1-4) ... Setting up libboost-locale-dev:amd64 (1.61.0.2) ... Setting up libpython-dev:amd64 (2.7.11-2) ... Setting up libboost-mpi1.61.0 (1.61.0+dfsg-2.1) ... Setting up python-dev (2.7.11-2) ... Setting up libboost-graph-dev:amd64 (1.61.0.2) ... Setting up libopenmpi-dev (1.10.3-3) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libboost-graph-parallel1.61.0 (1.61.0+dfsg-2.1) ... Setting up openmpi-bin (1.10.3-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-dev (1.7) ... Setting up libboost-graph-parallel1.61-dev (1.61.0+dfsg-2.1) ... Setting up libboost-graph-parallel-dev (1.61.0.2) ... Setting up mpi-default-bin (1.7) ... Setting up libboost-mpi1.61-dev (1.61.0+dfsg-2.1) ... Setting up libboost-mpi-dev (1.61.0.2) ... Setting up python3 (3.5.1-4) ... Setting up libboost-mpi-python1.61.0 (1.61.0+dfsg-2.1) ... Setting up libboost-mpi-python1.61-dev (1.61.0+dfsg-2.1) ... Setting up python3-dev (3.5.1-4) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up libboost-mpi-python-dev (1.61.0.2) ... Setting up dh-python (2.20160818) ... Setting up debhelper (9.20160814) ... Setting up dh-autoreconf (12) ... Setting up libboost-python1.61-dev (1.61.0+dfsg-2.1) ... Setting up libboost-python-dev (1.61.0.2) ... Setting up libboost-all-dev (1.61.0.2) ... Setting up sbuild-build-depends-autodock-vina-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.27-6 dpkg-dev_1.18.10 g++-6_6.2.0-1 gcc-6_6.2.0-1 libc6-dev_2.23-5 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 linux-libc-dev_4.7.2-1 Package versions: adduser_3.115 apt_1.3~rc2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6 base-passwd_3.5.40 bash_4.3-15 binutils_2.27-6 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 clang-3.8_1:3.8.1-9 coreutils_8.25-2 cpp_4:6.1.1-1 cpp-6_6.2.0-1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debian-archive-keyring_2014.3 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 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libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpciaccess0_0.13.4-1 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-2 libpython2.7-dev_2.7.12-2 libpython2.7-minimal_2.7.12-2 libpython2.7-stdlib_2.7.12-2 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-3 libpython3.5-dev_3.5.2-3 libpython3.5-minimal_3.5.2-3 libpython3.5-stdlib_3.5.2-3 libquadmath0_6.2.0-1 libreadline6_6.3-8+b4 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28.1-1 libsqlite3-0_3.14.1-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 libsystemd0_231-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtool_2.4.6-2 libtsan0_6.2.0-1 libubsan0_6.2.0-1 libudev1_231-5 libunistring0_0.9.6+really0.9.3-0.1 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libxml2_2.9.4+dfsg1-1+b1 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.1-1 mpi-default-bin_1.7 mpi-default-dev_1.7 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 ocl-icd-libopencl1_2.2.9-1 openmpi-bin_1.10.3-3 openmpi-common_1.10.3-3 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 python_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-2 python2.7-dev_2.7.12-2 python2.7-minimal_2.7.12-2 python3_3.5.1-4 python3-dev_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-3 python3.5-dev_3.5.2-3 python3.5-minimal_3.5.2-3 readline-common_6.3-8 sbuild-build-depends-autodock-vina-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 util-linux_2.28.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Nov 19 21:54:20 2013 UTC using DSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./autodock-vina_1.1.2-3.dsc dpkg-source: info: extracting autodock-vina in /<> dpkg-source: info: unpacking autodock-vina_1.1.2.orig.tar.gz dpkg-source: info: unpacking autodock-vina_1.1.2-3.debian.tar.gz dpkg-source: info: applying remove_static.patch dpkg-source: info: applying do_not_link_against_unneeded_libs.patch dpkg-source: info: applying annoying_static_removed_was_in_for_a_reason_questionmark.patch dpkg-source: info: applying fix_boost.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-51905a10-4b67-46c1-9e93-7dbc70c5fa1c SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package autodock-vina dpkg-buildpackage: info: source version 1.1.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build autodock-vina-1.1.2 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f build/linux/release/*.o build/linux/release/vina* make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make BASE=/usr -C build/linux/release CLFAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" LDFLAGS="-Wl,-z,relro --lto" make[2]: Entering directory '/<>/build/linux/release' g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp clang: error: unsupported option '--lto' ../../makefile_common:24: recipe for target 'main.o' failed make[2]: *** [main.o] Error 1 make[2]: Leaving directory '/<>/build/linux/release' debian/rules:17: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T16:25:17Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 0 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 189 Job: autodock-vina_1.1.2-3 Machine Architecture: amd64 Package: autodock-vina Package-Time: 217 Source-Version: 1.1.2-3 Space: 0 Status: failed Version: 1.1.2-3 -------------------------------------------------------------------------------- Finished at 2016-08-29T16:25:17Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 218.036329358s DC-Time-Estimation: 218.036329358 versus expected 542 (r/m: 1.48582427339471 ; m: 218.036329358)