DC-Build-Header: bagel 0.0~git20160507-3 / 2016-08-29 15:24:14 +0000 DC-Task: type:rebuild-binarch-only source:bagel version:0.0~git20160507-3 chroot:unstable esttime:6679 logfile:/tmp/bagel_0.0~git20160507-3_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang bagel_0.0~git20160507-3' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-14-82.eu-central-1.compute.internal +==============================================================================+ | bagel 0.0~git20160507-3 (amd64) Mon, 29 Aug 2016 15:24:14 +0000 | +==============================================================================+ Package: bagel Version: 0.0~git20160507-3 Source Version: 0.0~git20160507-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-2a62b2e4-8463-43f0-ac5f-717e80d76287' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 2s (2088 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 0s (96.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/bagel-Wegcv1 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (69.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bagel' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debichem/unstable/bagel/ Need to get 23.2 MB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main bagel 0.0~git20160507-3 (dsc) [2191 B] Get:2 http://127.0.0.1:9999/debian unstable/main bagel 0.0~git20160507-3 (tar) [23.2 MB] Get:3 http://127.0.0.1:9999/debian unstable/main bagel 0.0~git20160507-3 (diff) [7272 B] Fetched 23.2 MB in 0s (43.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bagel-Wegcv1/bagel-0.0~git20160507' with '<>' I: NOTICE: Log filtering will replace 'build/bagel-Wegcv1' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sa6OXV/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-sa6OXV/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sa6OXV/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-sa6OXV/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sa6OXV/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-sa6OXV/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 774 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sa6OXV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 774 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, libblas-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, liblapack-dev, libmpich-dev, libxc-dev, python-dev Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, libblas-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, liblapack-dev, libmpich-dev, libxc-dev, python-dev dpkg-deb: building package 'sbuild-build-depends-bagel-dummy' in '/<>/resolver-AG1tLt/apt_archive/sbuild-build-depends-bagel-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bagel-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-AG1tLt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AG1tLt/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-AG1tLt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AG1tLt/apt_archive ./ Sources [407 B] Get:5 copy:/<>/resolver-AG1tLt/apt_archive ./ Packages [495 B] Fetched 1859 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install bagel build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-chrono1.61.0 libboost-python-dev libboost-python1.61-dev libboost-python1.61.0 libboost-regex-dev libboost-regex1.61-dev libboost-regex1.61.0 libboost-serialization-dev libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-system1.61.0 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost-timer1.61.0 libboost1.61-dev libcr-dev libcr0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libicu-dev libicu57 liblapack-dev liblapack3 libmagic-mgc libmagic1 libmpdec2 libmpich-dev libmpich12 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline6 libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl libtool libunistring0 libxc-dev libxc4 libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc-man liblapack-doc libboost1.61-doc gccxml libboost-atomic1.61-dev libboost-chrono1.61-dev libboost-context1.61-dev libboost-coroutine1.61-dev libboost-date-time1.61-dev libboost-exception1.61-dev libboost-filesystem1.61-dev libboost-graph1.61-dev libboost-graph-parallel1.61-dev libboost-iostreams1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-random1.61-dev libboost-signals1.61-dev libboost-system1.61-dev libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev blcr-dkms icu-doc libtool-doc gcj-jdk less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc readline-doc Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs mpich libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-chrono1.61.0 libboost-python-dev libboost-python1.61-dev libboost-python1.61.0 libboost-regex-dev libboost-regex1.61-dev libboost-regex1.61.0 libboost-serialization-dev libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-system1.61.0 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost-timer1.61.0 libboost1.61-dev libcr-dev libcr0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libicu-dev libicu57 liblapack-dev liblapack3 libmagic-mgc libmagic1 libmpdec2 libmpich-dev libmpich12 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline6 libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl libtool libunistring0 libxc-dev libxc4 libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common sbuild-build-depends-bagel-dummy 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After this operation, 630 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AG1tLt/apt_archive ./ sbuild-build-depends-bagel-dummy 0.invalid.0 [844 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.12-2 [387 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.12-2 [1348 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.11-2 [40.3 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 6.3-8 [57.7 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6 amd64 6.3-8+b4 [142 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.14.1-1 [559 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.12-2 [1875 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.12-2 [277 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.11-2 [19.8 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.11-2 [153 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.2-3 [568 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.2-3 [1644 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.1-4 [35.3 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.2-3 [2126 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.2-3 [214 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.1-4 [18.6 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20160818 [83.0 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.1-4 [21.6 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.2.0-1 [264 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran-6-dev amd64 6.2.0-1 [295 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 gfortran-6 amd64 6.2.0-1 [31.7 MB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 gfortran amd64 4:6.1.1-1 [1352 B] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-3 [172 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libblas-common amd64 3.6.1-2 [13.9 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.6.1-2 [157 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libblas-dev amd64 3.6.1-2 [18.9 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.61.0 amd64 1.61.0+dfsg-2.1 [32.1 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.61.0 amd64 1.61.0+dfsg-2.1 [35.8 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.61-dev amd64 1.61.0+dfsg-2.1 [6843 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.61.0 amd64 1.61.0+dfsg-2.1 [137 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.12-2 [1070 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.0-1 [128 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.12-2 [28.1 MB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.11-2 [19.8 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.12-2 [281 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.11-2 [1128 B] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5 amd64 3.5.2-3 [1368 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-dev amd64 3.5.2-3 [37.6 MB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-dev amd64 3.5.1-4 [18.7 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-dev amd64 3.5.2-3 [413 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 python3-dev amd64 3.5.1-4 [1152 B] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.61-dev amd64 1.61.0+dfsg-2.1 [163 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python-dev amd64 1.61.0.2 [3776 B] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.61.0 amd64 1.61.0+dfsg-2.1 [288 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-3 [16.3 MB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.61-dev amd64 1.61.0+dfsg-2.1 [331 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex-dev amd64 1.61.0.2 [3646 B] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.61.0 amd64 1.61.0+dfsg-2.1 [125 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.61-dev amd64 1.61.0+dfsg-2.1 [160 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization-dev amd64 1.61.0.2 [3614 B] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.61.0 amd64 1.61.0+dfsg-2.1 [34.2 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.61.0 amd64 1.61.0+dfsg-2.1 [226 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.61-dev amd64 1.61.0+dfsg-2.1 [262 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test-dev amd64 1.61.0.2 [3432 B] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libcr0 amd64 0.8.5-2.3 [32.9 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libcr-dev amd64 0.8.5-2.3 [40.1 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.6.1-2 [1963 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 liblapack-dev amd64 3.6.1-2 [1977 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libxc4 amd64 3.0.0-1 [367 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libxc-dev amd64 3.0.0-1 [432 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libmpich12 amd64 3.2-7 [904 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libmpich-dev amd64 3.2-7 [1199 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 164 MB in 2s (75.1 MB/s) Selecting previously unselected package groff-base. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_amd64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.10_amd64.deb ... Unpacking bsdmainutils (9.0.10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.12-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.12-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.12-2_amd64.deb ... Unpacking python2.7-minimal (2.7.12-2) ... 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Unpacking python (2.7.11-2) ... Selecting previously unselected package libpython3.5-minimal:amd64. Preparing to unpack .../1-libpython3.5-minimal_3.5.2-3_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.2-3) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../2-python3.5-minimal_3.5.2-3_amd64.deb ... Unpacking python3.5-minimal (3.5.2-3) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.5.1-4_amd64.deb ... Unpacking python3-minimal (3.5.1-4) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../4-libmpdec2_2.4.2-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-1) ... Selecting previously unselected package libpython3.5-stdlib:amd64. Preparing to unpack .../5-libpython3.5-stdlib_3.5.2-3_amd64.deb ... Unpacking libpython3.5-stdlib:amd64 (3.5.2-3) ... Selecting previously unselected package python3.5. Preparing to unpack .../6-python3.5_3.5.2-3_amd64.deb ... Unpacking python3.5 (3.5.2-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.5.1-4_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.5.1-4) ... Selecting previously unselected package dh-python. Preparing to unpack .../8-dh-python_2.20160818_all.deb ... Unpacking dh-python (2.20160818) ... Setting up libssl1.0.2:amd64 (1.0.2h-1) ... Setting up libpython3.5-minimal:amd64 (3.5.2-3) ... Setting up libexpat1:amd64 (2.2.0-1) ... Setting up python3.5-minimal (3.5.2-3) ... Setting up python3-minimal (3.5.1-4) ... Selecting previously unselected package python3. (Reading database ... 12131 files and directories currently installed.) Preparing to unpack .../00-python3_3.5.1-4_amd64.deb ... Unpacking python3 (3.5.1-4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.28-4_amd64.deb ... Unpacking libmagic-mgc (1:5.28-4) ... 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Unpacking libfile-stripnondeterminism-perl (0.023-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../21-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_0.023-2_all.deb ... Unpacking dh-strip-nondeterminism (0.023-2) ... Selecting previously unselected package libtool. Preparing to unpack .../23-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../24-dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../25-debhelper_9.20160814_all.deb ... Unpacking debhelper (9.20160814) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../26-libgfortran3_6.2.0-1_amd64.deb ... Unpacking libgfortran3:amd64 (6.2.0-1) ... 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Setting up libblas3 (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.23-5) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libsqlite3-0:amd64 (3.14.1-1) ... Setting up libexpat1-dev:amd64 (2.2.0-1) ... Setting up libboost-chrono1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up icu-devtools (57.1-3) ... Setting up bsdmainutils (9.0.10) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxc4:amd64 (3.0.0-1) ... Setting up libboost-serialization1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up autopoint (0.19.8.1-1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libcr-dev (0.8.5-2.3) ... Setting up libreadline6:amd64 (6.3-8+b4) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up gfortran-6 (6.2.0-1) ... Setting up libmpich12:amd64 (3.2-7) ... Setting up libboost-regex1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-1) ... Setting up libboost-serialization1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libxc-dev (3.0.0-1) ... Setting up liblapack3 (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.2-3) ... Setting up libboost-timer1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-3) ... Setting up file (1:5.28-4) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-regex1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up automake (1:1.15-4) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-regex-dev:amd64 (1.61.0.2) ... Setting up libboost-test1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-2) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.2-3) ... Setting up gfortran (4:6.1.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up libboost-serialization-dev:amd64 (1.61.0.2) ... Setting up po-debconf (1.0.19) ... Setting up libblas-dev (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libboost-test1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libpython3.5:amd64 (3.5.2-3) ... Setting up python2.7 (2.7.12-2) ... Setting up libpython3.5-dev:amd64 (3.5.2-3) ... Setting up libpython-stdlib:amd64 (2.7.11-2) ... Setting up libmpich-dev (3.2-7) ... update-alternatives: using /usr/include/mpich to provide /usr/include/mpi (mpi) in auto mode Setting up libpython2.7:amd64 (2.7.12-2) ... Setting up libpython2.7-dev:amd64 (2.7.12-2) ... Setting up libboost-test-dev:amd64 (1.61.0.2) ... Setting up python3.5-dev (3.5.2-3) ... Setting up python2.7-dev (2.7.12-2) ... Setting up python (2.7.11-2) ... Setting up libpython3-dev:amd64 (3.5.1-4) ... Setting up liblapack-dev (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libpython-dev:amd64 (2.7.11-2) ... Setting up python-dev (2.7.11-2) ... Setting up dh-autoreconf (12) ... Setting up python3 (3.5.1-4) ... Setting up python3-dev (3.5.1-4) ... Setting up dh-python (2.20160818) ... Setting up debhelper (9.20160814) ... Setting up libboost-python1.61-dev (1.61.0+dfsg-2.1) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up libboost-python-dev (1.61.0.2) ... Setting up sbuild-build-depends-bagel-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.27-6 dpkg-dev_1.18.10 g++-6_6.2.0-1 gcc-6_6.2.0-1 libc6-dev_2.23-5 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 linux-libc-dev_4.7.2-1 Package versions: adduser_3.115 apt_1.3~rc2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6 base-passwd_3.5.40 bash_4.3-15 binutils_2.27-6 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 clang-3.8_1:3.8.1-9 coreutils_8.25-2 cpp_4:6.1.1-1 cpp-6_6.2.0-1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debian-archive-keyring_2014.3 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 eatmydata_105-3 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1 g++-6_6.2.0-1 gcc_4:6.1.1-1 gcc-6_6.2.0-1 gcc-6-base_6.2.0-1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.2.0-1 gpgv_2.1.14-5 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-3 init-system-helpers_1.42 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapt-pkg5.0_1.3~rc2 libarchive-zip-perl_1.59-1 libasan3_6.2.0-1 libatomic1_6.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28.1-1 libboost-chrono1.61.0_1.61.0+dfsg-2.1 libboost-python-dev_1.61.0.2 libboost-python1.61-dev_1.61.0+dfsg-2.1 libboost-python1.61.0_1.61.0+dfsg-2.1 libboost-regex-dev_1.61.0.2 libboost-regex1.61-dev_1.61.0+dfsg-2.1 libboost-regex1.61.0_1.61.0+dfsg-2.1 libboost-serialization-dev_1.61.0.2 libboost-serialization1.61-dev_1.61.0+dfsg-2.1 libboost-serialization1.61.0_1.61.0+dfsg-2.1 libboost-system1.61.0_1.61.0+dfsg-2.1 libboost-test-dev_1.61.0.2 libboost-test1.61-dev_1.61.0+dfsg-2.1 libboost-test1.61.0_1.61.0+dfsg-2.1 libboost-timer1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-5 libc-dev-bin_2.23-5 libc6_2.23-5 libc6-dev_2.23-5 libcap-ng0_0.7.7-3 libcc1-0_6.2.0-1 libcilkrts5_6.2.0-1 libclang-common-3.8-dev_1:3.8.1-9 libclang1-3.8_1:3.8.1-9 libcomerr2_1.43.1-1 libcr-dev_0.8.5-2.3 libcr0_0.8.5-2.3 libcroco3_0.6.11-1 libdb5.3_5.3.28-12 libdebconfclient0_0.215 libdpkg-perl_1.18.10 libeatmydata1_105-3 libedit2_3.1-20150325-1+b1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.0-1 libgcc1_1:6.2.0-1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-1 libgfortran3_6.2.0-1 libglib2.0-0_2.48.1-3 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.2.0-1 libgpg-error0_1.24-1 libicu-dev_57.1-3 libicu57_57.1-3 libisl15_0.17.1-1 libitm1_6.2.0-1 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 libllvm3.8_1:3.8.1-9 liblsan0_6.2.0-1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28.1-1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.4-2 libmpich-dev_3.2-7 libmpich12_3.2-7 libmpx2_6.2.0-1 libncurses5_6.0+20160625-1 libncursesw5_6.0+20160625-1 libobjc-6-dev_6.2.0-1 libobjc4_6.2.0-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-2 libpython2.7-dev_2.7.12-2 libpython2.7-minimal_2.7.12-2 libpython2.7-stdlib_2.7.12-2 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-3 libpython3.5-dev_3.5.2-3 libpython3.5-minimal_3.5.2-3 libpython3.5-stdlib_3.5.2-3 libquadmath0_6.2.0-1 libreadline6_6.3-8+b4 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28.1-1 libsqlite3-0_3.14.1-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 libsystemd0_231-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtool_2.4.6-2 libtsan0_6.2.0-1 libubsan0_6.2.0-1 libudev1_231-5 libunistring0_0.9.6+really0.9.3-0.1 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libxc-dev_3.0.0-1 libxc4_3.0.0-1 libxml2_2.9.4+dfsg1-1+b1 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.1-1 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 python_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-2 python2.7-dev_2.7.12-2 python2.7-minimal_2.7.12-2 python3_3.5.1-4 python3-dev_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-3 python3.5-dev_3.5.2-3 python3.5-minimal_3.5.2-3 readline-common_6.3-8 sbuild-build-depends-bagel-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 util-linux_2.28.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 6 14:55:28 2016 UTC using RSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bagel_0.0~git20160507-3.dsc dpkg-source: info: extracting bagel in /<> dpkg-source: info: unpacking bagel_0.0~git20160507.orig.tar.gz dpkg-source: info: unpacking bagel_0.0~git20160507-3.debian.tar.xz dpkg-source: info: applying disable_large_integral_file.patch dpkg-source: info: applying fix_linking_error.patch dpkg-source: info: applying skip_failing_testcases.patch dpkg-source: info: applying skip_mrci.patch dpkg-source: info: applying add_missing_includes.patch dpkg-source: info: applying install_all_basis_sets.patch dpkg-source: info: applying gcc6.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-2a62b2e4-8463-43f0-ac5f-717e80d76287 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bagel dpkg-buildpackage: info: source version 0.0~git20160507-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build bagel-0.0~git20160507 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf /<>/src/testsuite make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:40: installing './config.guess' configure.ac:40: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ --datadir=/usr/share/bagel \ --libdir=/usr/lib/bagel \ --enable-static \ --disable-shared \ --with-boost \ --with-libxc=yes \ --with-mpi=openmpi \ --disable-scalapack \ --enable-smith ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-libxc=yes --with-mpi=openmpi --disable-scalapack --enable-smith configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none ..openmpi requested.. checking for mpicc... mpicc checking for mpicxx... mpicxx checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking dependency style of mpicc... (cached) none checking whether we are using the GNU C++ compiler... (cached) yes checking whether mpicxx accepts -g... (cached) yes checking dependency style of mpicxx... (cached) none checking whether mpicxx supports C++11 features by default... no checking whether mpicxx supports C++11 features with -std=c++11... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... failed checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /lib/cpp configure: error: in `/<>': configure: error: C preprocessor "/lib/cpp" fails sanity check See `config.log' for more details "tail -v -n +0 config.log" ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by BAGEL configure 1.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-libxc=yes --with-mpi=openmpi --disable-scalapack --enable-smith ## --------- ## ## Platform. ## ## --------- ## hostname = ip-172-31-14-82 uname -m = x86_64 uname -r = 3.16.0-4-amd64 uname -s = Linux uname -v = #1 SMP Debian 3.16.7-ckt25-2+deb8u3 (2016-07-02) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2586: checking for a BSD-compatible install configure:2654: result: /usr/bin/install -c configure:2665: checking whether build environment is sane configure:2720: result: yes configure:2871: checking for a thread-safe mkdir -p configure:2910: result: /bin/mkdir -p configure:2917: checking for gawk configure:2947: result: no configure:2917: checking for mawk configure:2933: found /usr/bin/mawk configure:2944: result: mawk configure:2955: checking whether make sets $(MAKE) configure:2977: result: yes configure:3006: checking whether make supports nested variables configure:3023: result: yes configure:3161: checking for python configure:3179: found /usr/bin/python configure:3191: result: /usr/bin/python configure:3212: checking for python version configure:3219: result: 2.7 configure:3231: checking for python platform configure:3238: result: linux2 configure:3264: checking for python script directory configure:3299: result: ${prefix}/lib/python2.7/dist-packages configure:3308: checking for python extension module directory configure:3343: result: ${exec_prefix}/lib/python2.7/dist-packages configure:3427: checking for gcc configure:3443: found /usr/bin/gcc configure:3454: result: gcc configure:3485: checking for C compiler version configure:3494: gcc --version >&5 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:3505: $? = 0 configure:3494: gcc -v >&5 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.2.0 Selected GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Candidate multilib: .;@m64 Selected multilib: .;@m64 configure:3505: $? = 0 configure:3494: gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3505: $? = 1 configure:3494: gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:3505: $? = 1 configure:3525: checking whether the C compiler works configure:3547: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c -lblas -llapack -lpthread -lmpi >&5 configure:3551: $? = 0 configure:3599: result: yes configure:3602: checking for C compiler default output file name configure:3604: result: a.out configure:3610: checking for suffix of executables configure:3617: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c -lblas -llapack -lpthread -lmpi >&5 configure:3621: $? = 0 configure:3643: result: configure:3665: checking whether we are cross compiling configure:3673: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c -lblas -llapack -lpthread -lmpi >&5 configure:3677: $? = 0 configure:3684: ./conftest configure:3688: $? = 0 configure:3703: result: no configure:3708: checking for suffix of object files configure:3730: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3734: $? = 0 configure:3755: result: o configure:3759: checking whether we are using the GNU C compiler configure:3778: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3778: $? = 0 configure:3787: result: yes configure:3796: checking whether gcc accepts -g configure:3816: gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3816: $? = 0 configure:3857: result: yes configure:3874: checking for gcc option to accept ISO C89 configure:3937: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3937: $? = 0 configure:3950: result: none needed configure:3975: checking whether gcc understands -c and -o together configure:3997: gcc -c conftest.c -o conftest2.o configure:4000: $? = 0 configure:3997: gcc -c conftest.c -o conftest2.o configure:4000: $? = 0 configure:4012: result: yes configure:4040: checking for style of include used by make configure:4068: result: GNU configure:4094: checking dependency style of gcc configure:4205: result: none configure:4278: checking for g++ configure:4294: found /usr/bin/g++ configure:4305: result: g++ configure:4332: checking for C++ compiler version configure:4341: g++ --version >&5 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:4352: $? = 0 configure:4341: g++ -v >&5 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.2.0 Selected GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Candidate multilib: .;@m64 Selected multilib: .;@m64 configure:4352: $? = 0 configure:4341: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:4352: $? = 1 configure:4341: g++ -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:4352: $? = 1 configure:4356: checking whether we are using the GNU C++ compiler configure:4375: g++ -c -g -O2 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:4375: $? = 0 configure:4384: result: yes configure:4393: checking whether g++ accepts -g configure:4413: g++ -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:4413: $? = 0 configure:4454: result: yes configure:4479: checking dependency style of g++ configure:4590: result: none configure:4630: checking for mpicc configure:4646: found /usr/bin/mpicc configure:4657: result: mpicc configure:4678: checking for mpicxx configure:4694: found /usr/bin/mpicxx configure:4705: result: mpicxx configure:4833: checking for C compiler version configure:4842: mpicc --version >&5 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:4853: $? = 0 configure:4842: mpicc -v >&5 mpicc for MPICH version 3.2 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.2.0 Selected GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Candidate multilib: .;@m64 Selected multilib: .;@m64 clang: warning: argument unused during compilation: '-I /usr/include/mpich' ... rest of stderr output deleted ... configure:4853: $? = 0 configure:4842: mpicc -V >&5 clang: error: unsupported option '-V -I/usr/include/mpich' configure:4853: $? = 1 configure:4842: mpicc -qversion >&5 clang: error: unknown argument: '-qversion' configure:4853: $? = 1 configure:4857: checking whether we are using the GNU C compiler configure:4885: result: yes configure:4894: checking whether mpicc accepts -g configure:4955: result: yes configure:4972: checking for mpicc option to accept ISO C89 configure:5048: result: none needed configure:5073: checking whether mpicc understands -c and -o together configure:5110: result: yes configure:5129: checking dependency style of mpicc configure:5240: result: none configure:5367: checking for C++ compiler version configure:5376: mpicxx --version >&5 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:5387: $? = 0 configure:5376: mpicxx -v >&5 mpicxx for MPICH version 3.2 clang version 3.8.1-9 (tags/RELEASE_381/final) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.2.0 Selected GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.2.0 Candidate multilib: .;@m64 Selected multilib: .;@m64 clang: warning: argument unused during compilation: '-I /usr/include/mpich' ... rest of stderr output deleted ... configure:5387: $? = 0 configure:5376: mpicxx -V >&5 clang: error: unsupported option '-V -I/usr/include/mpich' configure:5387: $? = 1 configure:5376: mpicxx -qversion >&5 clang: error: unknown argument: '-qversion' configure:5387: $? = 1 configure:5391: checking whether we are using the GNU C++ compiler configure:5419: result: yes configure:5428: checking whether mpicxx accepts -g configure:5489: result: yes configure:5514: checking dependency style of mpicxx configure:5625: result: none configure:5651: checking whether mpicxx supports C++11 features by default configure:5677: mpicxx -c -g -O2 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 conftest.cpp:15:21: error: expected parameter declarator static_assert(sizeof(int) <= sizeof(T), "not big enough"); ^ conftest.cpp:15:21: error: expected ')' conftest.cpp:15:20: note: to match this '(' static_assert(sizeof(int) <= sizeof(T), "not big enough"); ^ conftest.cpp:15:7: error: C++ requires a type specifier for all declarations static_assert(sizeof(int) <= sizeof(T), "not big enough"); ^ conftest.cpp:18:29: error: a space is required between consecutive right angle brackets (use '> >') typedef check> right_angle_brackets; ^~ > > conftest.cpp:21:5: error: unknown type name 'decltype' decltype(a) b; ^ conftest.cpp:21:16: error: expected ';' after top level declarator decltype(a) b; ^ ; conftest.cpp:25:15: warning: rvalue references are a C++11 extension [-Wc++11-extensions] check_type&& cr = static_cast(c); ^ conftest.cpp:25:45: warning: rvalue references are a C++11 extension [-Wc++11-extensions] check_type&& cr = static_cast(c); ^ conftest.cpp:27:5: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto d = a; ^ 3 warnings and 6 errors generated. configure:5677: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | /* end confdefs.h. */ | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | typedef check> right_angle_brackets; | | int a; | decltype(a) b; | | typedef check check_type; | check_type c; | check_type&& cr = static_cast(c); | | auto d = a; | configure:5684: result: no configure:5695: checking whether mpicxx supports C++11 features with -std=c++11 configure:5723: mpicxx -c -g -O2 -DNDEBUG -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:5723: $? = 0 configure:5732: result: yes configure:5797: checking build system type configure:5811: result: x86_64-pc-linux-gnu configure:5831: checking host system type configure:5844: result: x86_64-pc-linux-gnu configure:5885: checking how to print strings configure:5912: result: printf configure:5933: checking for a sed that does not truncate output configure:5997: result: /bin/sed configure:6015: checking for grep that handles long lines and -e configure:6073: result: /bin/grep configure:6078: checking for egrep configure:6140: result: /bin/grep -E configure:6145: checking for fgrep configure:6207: result: /bin/grep -F configure:6242: checking for ld used by mpicc configure:6309: result: /usr/bin/ld configure:6316: checking if the linker (/usr/bin/ld) is GNU ld configure:6331: result: yes configure:6343: checking for BSD- or MS-compatible name lister (nm) configure:6397: result: /usr/bin/nm -B configure:6527: checking the name lister (/usr/bin/nm -B) interface configure:6534: mpicc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:6537: /usr/bin/nm -B "conftest.o" /usr/bin/nm: 'conftest.o': No such file configure:6540: output configure:6547: result: BSD nm configure:6550: checking whether ln -s works configure:6554: result: yes configure:6562: checking the maximum length of command line arguments configure:6693: result: 1572864 configure:6741: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:6781: result: func_convert_file_noop configure:6788: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:6808: result: func_convert_file_noop configure:6815: checking for /usr/bin/ld option to reload object files configure:6822: result: -r configure:6896: checking for objdump configure:6912: found /usr/bin/objdump configure:6923: result: objdump configure:6955: checking how to recognize dependent libraries configure:7155: result: pass_all configure:7240: checking for dlltool configure:7270: result: no configure:7300: checking how to associate runtime and link libraries configure:7327: result: printf %s\n configure:7388: checking for ar configure:7404: found /usr/bin/ar configure:7415: result: ar configure:7452: checking for archiver @FILE support configure:7469: mpicc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:7469: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:7495: result: no configure:7553: checking for strip configure:7569: found /usr/bin/strip configure:7580: result: strip configure:7652: checking for ranlib configure:7668: found /usr/bin/ranlib configure:7679: result: ranlib configure:7781: checking command to parse /usr/bin/nm -B output from mpicc object configure:7934: mpicc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:7937: $? = 1 : failed program was: #ifdef __cplusplus extern "C" { #endif char nm_test_var; void nm_test_func(void); void nm_test_func(void){} #ifdef __cplusplus } #endif int main(){nm_test_var='a';nm_test_func();return(0);} configure:7934: mpicc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:7937: $? = 1 : failed program was: #ifdef __cplusplus extern "C" { #endif char nm_test_var; void nm_test_func(void); void nm_test_func(void){} #ifdef __cplusplus } #endif int main(){nm_test_var='a';nm_test_func();return(0);} configure:8048: result: failed configure:8098: checking for sysroot configure:8128: result: no configure:8135: checking for a working dd configure:8173: result: /bin/dd configure:8177: checking how to truncate binary pipes configure:8192: result: /bin/dd bs=4096 count=1 configure:8328: mpicc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:8331: $? = 1 configure:8521: checking for mt configure:8551: result: no configure:8571: checking if : is a manifest tool configure:8577: : '-?' configure:8585: result: no configure:9262: checking how to run the C preprocessor configure:9293: mpicc -E -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9293: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9293: mpicc -E -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9293: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9293: mpicc -E -traditional-cpp -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9293: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9293: mpicc -E -traditional-cpp -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9293: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9293: /lib/cpp -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9293: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9293: /lib/cpp -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9293: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9332: result: /lib/cpp configure:9352: /lib/cpp -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9352: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9352: /lib/cpp -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c error: invalid argument '-std=c++11' not allowed with 'C/ObjC' configure:9352: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "BAGEL" | #define PACKAGE_TARNAME "bagel" | #define PACKAGE_VERSION "1.0" | #define PACKAGE_STRING "BAGEL 1.0" | #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" | #define PACKAGE_URL "http://www.nubakery.org" | #define PACKAGE "bagel" | #define VERSION "1.0" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:9382: error: in `/<>': configure:9384: error: C preprocessor "/lib/cpp" fails sanity check See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -DNDEBUG' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-Wl,-z,relro ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value='-lblas -llapack -lpthread -lmpi' ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_PYTHON_set= ac_cv_env_PYTHON_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_host=x86_64-pc-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_PYTHON=/usr/bin/python ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=mawk ac_cv_prog_CPP=/lib/cpp ac_cv_prog_MPICC=mpicc ac_cv_prog_MPICXX=mpicxx ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes am_cv_python_platform=linux2 am_cv_python_pyexecdir='${exec_prefix}/lib/python2.7/dist-packages' am_cv_python_pythondir='${prefix}/lib/python2.7/dist-packages' am_cv_python_version=2.7 ax_cv_cxx_compile_cxx11=no ax_cv_cxx_compile_cxx11__std_cpp11=yes lt_cv_ar_at_file=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_gnu_ld=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_sys_global_symbol_pipe= lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl= lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /<>/missing aclocal-1.15' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /<>/missing autoconf' AUTOHEADER='${SHELL} /<>/missing autoheader' AUTOMAKE='${SHELL} /<>/missing automake-1.15' AWK='mawk' BOOST_CPPFLAGS='' BOOST_LDFLAGS='' CC='mpicc' CCDEPMODE='depmode=none' CFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CPP='/lib/cpp' CPPFLAGS='-std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2' CXX='mpicxx' CXXCPP='' CXXDEPMODE='depmode=none' CXXFLAGS='-g -O2 -DNDEBUG -std=c++11' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' FGREP='/bin/grep -F' GREP='/bin/grep' HAVE_CXX11='1' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld' LDFLAGS='-Wl,-z,relro' LIBOBJS='' LIBS=' -lblas -llapack -lpthread -lmpi' LIBTOOL='' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAKEINFO='${SHELL} /<>/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' MPICC='mpicc' MPICXX='mpicxx' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='bagel' PACKAGE_BUGREPORT='shiozaki@northwestern.edu' PACKAGE_NAME='BAGEL' PACKAGE_STRING='BAGEL 1.0' PACKAGE_TARNAME='bagel' PACKAGE_URL='http://www.nubakery.org' PACKAGE_VERSION='1.0' PATH_SEPARATOR=':' PYTHON='/usr/bin/python' PYTHON_EXEC_PREFIX='${exec_prefix}' PYTHON_PLATFORM='linux2' PYTHON_PREFIX='${prefix}' PYTHON_VERSION='2.7' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/bash' STRIP='strip' VERSION='1.0' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='/usr/share/bagel' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/install-sh' libdir='/usr/lib/bagel' libexecdir='${prefix}/lib/x86_64-linux-gnu' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' pkgpyexecdir='${pyexecdir}/bagel' pkgpythondir='${pythondir}/bagel' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' pyexecdir='${exec_prefix}/lib/python2.7/dist-packages' pythondir='${prefix}/lib/python2.7/dist-packages' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "BAGEL" #define PACKAGE_TARNAME "bagel" #define PACKAGE_VERSION "1.0" #define PACKAGE_STRING "BAGEL 1.0" #define PACKAGE_BUGREPORT "shiozaki@northwestern.edu" #define PACKAGE_URL "http://www.nubakery.org" #define PACKAGE "bagel" #define VERSION "1.0" #define HAVE_CXX11 1 configure: exit 1 dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-libxc=yes --with-mpi=openmpi --disable-scalapack --enable-smith returned exit code 1 debian/rules:16: recipe for target 'override_dh_auto_configure' failed make[1]: *** [override_dh_auto_configure] Error 2 make[1]: Leaving directory '/<>' debian/rules:9: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T15:25:39Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 11 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 45 Job: bagel_0.0~git20160507-3 Machine Architecture: amd64 Package: bagel Package-Time: 85 Source-Version: 0.0~git20160507-3 Space: 0 Status: failed Version: 0.0~git20160507-3 -------------------------------------------------------------------------------- Finished at 2016-08-29T15:25:39Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 85.888086414s DC-Time-Estimation: 85.888086414 versus expected 6679 (r/m: 76.76398658838094 ; m: 85.888086414)