DC-Build-Header: librostlab-blast 1.0.1-7 / 2016-08-29 16:03:58 +0000 DC-Task: type:rebuild-binarch-only source:librostlab-blast version:1.0.1-7 chroot:unstable esttime:786 logfile:/tmp/librostlab-blast_1.0.1-7_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang librostlab-blast_1.0.1-7' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-11-122.eu-central-1.compute.internal +==============================================================================+ | librostlab-blast 1.0.1-7 (amd64) Mon, 29 Aug 2016 16:03:58 +0000 | +==============================================================================+ Package: librostlab-blast Version: 1.0.1-7 Source Version: 1.0.1-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-13aed693-605c-4c88-8365-aa608706c275' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 2s (2030 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 1s (22.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/librostlab-blast-QhY5Jx + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (70.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/ Need to get 392 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main librostlab-blast 1.0.1-7 (dsc) [2489 B] Get:2 http://127.0.0.1:9999/debian unstable/main librostlab-blast 1.0.1-7 (tar) [384 kB] Get:3 http://127.0.0.1:9999/debian unstable/main librostlab-blast 1.0.1-7 (diff) [5480 B] Fetched 392 kB in 0s (2461 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/librostlab-blast-QhY5Jx/librostlab-blast-1.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-QhY5Jx' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tPM1km/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-tPM1km/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tPM1km/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-tPM1km/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tPM1km/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-tPM1km/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 768 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tPM1km/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 768 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package 'sbuild-build-depends-librostlab-blast-dummy' in '/<>/resolver-gJ4DSc/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-librostlab-blast-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-gJ4DSc/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gJ4DSc/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-gJ4DSc/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gJ4DSc/apt_archive ./ Sources [425 B] Get:5 copy:/<>/resolver-gJ4DSc/apt_archive ./ Packages [517 B] Fetched 1899 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install librostlab-blast build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file flex fontconfig fontconfig-config fonts-dejavu-core gcc-5-base gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libasan2 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt5 libcgraph6 libclang1-3.6 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdbus-1-3 libexpat1 libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libgcc-5-dev libgd3 libglib2.0-0 libgnutls30 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libllvm3.6v5 libltdl7 libmagic-mgc libmagic1 libmpx0 libnettle6 libnspr4 libnss3 libobjc-5-dev libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpoppler61 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline6 librostlab3 librostlab3-dev libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libssl1.0.2 libstdc++-5-dev libsynctex1 libtasn1-6 libtexlua52 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 lsb-base m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal readline-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff cups-common libgd-tools gnutls-bin krb5-doc krb5-user liblcms2-utils librostlab-doc libstdc++-5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support readline-doc perl-tk gv | postscript-viewer xpdf-reader | pdf-viewer libfile-which-perl python-pygments libspreadsheet-parseexcel-perl texlive-pstricks libtcltk-ruby prerex dot2tex gvfs-bin Recommended packages: curl | wget | lynx-cur fonts-liberation dbus libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libgts-bin krb5-locales libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl lmodern ruby wish tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc texlive-pictures-doc tk ruby | ruby-interpreter libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file flex fontconfig fontconfig-config fonts-dejavu-core gcc-5-base gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libasan2 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt5 libcgraph6 libclang1-3.6 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdbus-1-3 libexpat1 libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libgcc-5-dev libgd3 libglib2.0-0 libgnutls30 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libllvm3.6v5 libltdl7 libmagic-mgc libmagic1 libmpx0 libnettle6 libnspr4 libnss3 libobjc-5-dev libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpoppler61 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline6 librostlab3 librostlab3-dev libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libssl1.0.2 libstdc++-5-dev libsynctex1 libtasn1-6 libtexlua52 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 lsb-base m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal readline-common sbuild-build-depends-librostlab-blast-dummy t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils 0 upgraded, 160 newly installed, 0 to remove and 0 not upgraded. Need to get 130 MB of archives. After this operation, 474 MB of additional disk space will be used. Get:1 copy:/<>/resolver-gJ4DSc/apt_archive ./ sbuild-build-depends-librostlab-blast-dummy 0.invalid.0 [860 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.12-2 [387 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.12-2 [1348 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.11-2 [40.3 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 6.3-8 [57.7 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6 amd64 6.3-8+b4 [142 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.14.1-1 [559 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.12-2 [1875 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.12-2 [277 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.11-2 [19.8 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.11-2 [153 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libfl-dev amd64 2.6.1-1 [92.5 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 flex amd64 2.6.1-1 [428 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.24-2 [279 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.6.3-3+b1 [437 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.11.0-6.7 [331 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig amd64 2.11.0-6.7 [403 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-1.2 [158 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20160629 [27.6 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+16 [251 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [26.2 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.11.1-1.1 [45.3 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.3-1 [128 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.3-1 [742 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libxpm4 amd64 1:3.5.11-1+b1 [48.1 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libzzip-0-13 amd64 0.13.62-3 [55.5 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 poppler-data all 0.4.7-7 [1466 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1 [30.7 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 gcc-5-base amd64 5.4.1-1 [173 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libnettle6 amd64 3.2-1 [191 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libhogweed4 amd64 3.2-1 [136 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-1 [115 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libp11-kit0 amd64 0.23.2-5 [111 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libtasn1-6 amd64 4.9-4 [50.0 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libgnutls30 amd64 3.5.3-3 [801 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.14.3+dfsg-1 [61.0 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.14.3+dfsg-1 [115 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.14.3+dfsg-1 [311 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.14.3+dfsg-1 [154 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [66.9 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [103 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2+b2 [222 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libbison-dev amd64 2:3.0.4.dfsg-1 [432 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 bison amd64 2:3.0.4.dfsg-1 [780 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 d-shlibs all 0.75 [18.0 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.6v5 amd64 1:3.6.2-3 [8010 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libasan2 amd64 5.4.1-1 [261 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libmpx0 amd64 5.4.1-1 [9410 B] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libgcc-5-dev amd64 5.4.1-1 [2214 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libstdc++-5-dev amd64 5.4.1-1 [1417 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-5-dev amd64 5.4.1-1 [373 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.6 amd64 1:3.6.2-3 [3664 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 doxygen amd64 1.8.11-3 [3773 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libcdt5 amd64 2.38.0-15 [59.4 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libcgraph6 amd64 2.38.0-15 [82.0 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.0-1 [132 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.6-2 [222 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libwebp6 amd64 0.5.1-2 [235 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libgd3 amd64 2.2.3-3+b1 [136 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.33.6-1 [532 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.11.1-1.1 [17.5 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.11.1-1.1 [11.6 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.9-2 [31.8 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.14.6-1+b1 [767 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libthai-data all 0.1.25-1 [165 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libdatrie1 amd64 0.2.10-2 [35.8 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libthai0 amd64 0.1.25-1 [51.6 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libpango-1.0-0 amd64 1.40.1-1 [311 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.8-1 [76.4 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.2.7-1+b1 [612 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.40.1-1 [236 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.40.1-1 [223 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libpathplan4 amd64 2.38.0-15 [62.6 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libxdot4 amd64 2.38.0-15 [55.4 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libgvc6 amd64 2.38.0-15 [637 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libgvpr2 amd64 2.38.0-15 [210 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1 [200 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 graphviz amd64 2.38.0-15 [733 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common-data amd64 0.6.32-1 [118 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common3 amd64 0.6.32-1 [52.1 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libdbus-1-3 amd64 1.10.10-1 [190 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-client3 amd64 0.6.32-1 [55.4 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libcups2 amd64 2.1.4-4 [299 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libcupsimage2 amd64 2.1.4-4 [120 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 libcupsfilters1 amd64 1.10.0-1 [126 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libjbig2dec0 amd64 0.13-3 [59.8 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 liblcms2-2 amd64 2.7-1 [140 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libopenjp2-7 amd64 2.1.1-1 [120 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libgs9-common all 9.19~dfsg-2 [3030 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libgs9 amd64 9.19~dfsg-2 [2067 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz-icu0 amd64 1.2.7-1+b1 [439 kB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 libkpathsea6 amd64 2016.20160513.41080-6 [159 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libnspr4 amd64 2:4.12-6 [117 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 libnss3 amd64 2:3.26-1 [1158 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 libpoppler61 amd64 0.44.0-3 [1267 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 libpotrace0 amd64 1.13-2 [25.3 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 libptexenc1 amd64 2016.20160513.41080-6 [57.3 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 librostlab3 amd64 1.0.20-6 [5928 B] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 librostlab3-dev amd64 1.0.20-6 [13.8 kB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libsynctex1 amd64 2016.20160513.41080-6 [64.2 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua52 amd64 2016.20160513.41080-6 [110 kB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 libtexluajit2 amd64 2016.20160513.41080-6 [249 kB] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 libxi6 amd64 2:1.7.6-1 [80.6 kB] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 tex-common all 6.05 [564 kB] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 preview-latex-style all 11.88-1.1 [337 kB] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 t1utils amd64 1.39-2 [59.0 kB] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 xdg-utils all 1.1.1-1 [71.1 kB] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 texlive-binaries amd64 2016.20160513.41080-6 [6537 kB] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 texlive-base all 2016.20160819-2 [15.6 MB] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 texlive-fonts-recommended all 2016.20160819-2 [5687 kB] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-base all 2016.20160819-2 [860 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-recommended all 2016.20160819-2 [13.2 MB] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 texlive-pictures all 2016.20160819-2 [3788 kB] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-extra all 2016.20160819-1 [10.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 130 MB in 1s (91.2 MB/s) Selecting previously unselected package groff-base. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_amd64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.10_amd64.deb ... Unpacking bsdmainutils (9.0.10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.12-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.12-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.12-2_amd64.deb ... Unpacking python2.7-minimal (2.7.12-2) ... 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Setting up liblcms2-2:amd64 (2.7-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.7-7) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.48.1-3) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up d-shlibs (0.75) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libtiff5:amd64 (4.0.6-2) ... Setting up gettext-base (0.19.8.1-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up librostlab3 (1.0.20-6) ... Setting up libicu57:amd64 (57.1-3) ... Setting up libnspr4:amd64 (2:4.12-6) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1+b1) ... Setting up libfreetype6:amd64 (2.6.3-3+b1) ... Setting up libtasn1-6:amd64 (4.9-4) ... Setting up libmagic-mgc (1:5.28-4) ... Setting up libfl-dev:amd64 (2.6.1-1) ... Setting up libmagic1:amd64 (1:5.28-4) ... Setting up libhogweed4:amd64 (3.2-1) ... Setting up lsb-base (9.20160629) ... Setting up libgraphite2-3:amd64 (1.3.8-1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up libssl1.0.2:amd64 (1.0.2h-1) ... Setting up libjbig2dec0:amd64 (0.13-3) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up t1utils (1.39-2) ... Setting up libp11-kit0:amd64 (0.23.2-5) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libsqlite3-0:amd64 (3.14.1-1) ... Setting up libbison-dev:amd64 (2:3.0.4.dfsg-1) ... Setting up libpotrace0 (1.13-2) ... Setting up libthai-data (0.1.25-1) ... Setting up bison (2:3.0.4.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up bsdmainutils (9.0.10) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up x11-common (1:7.7+16) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080-6) ... Setting up libcdt5 (2.38.0-15) ... Setting up librostlab3-dev (1.0.20-6) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1) ... Setting up libidn11:amd64 (1.33-1) ... Setting up libdbus-1-3:amd64 (1.10.10-1) ... Setting up libreadline6:amd64 (6.3-8+b4) ... Setting up gcc-5-base:amd64 (5.4.1-1) ... Setting up libllvm3.6v5:amd64 (1:3.6.2-3) ... Setting up libavahi-common-data:amd64 (0.6.32-1) ... Setting up libcgraph6 (2.38.0-15) ... Setting up libwebp6:amd64 (0.5.1-2) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-1.2) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up tex-common (6.05) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libmpx0:amd64 (5.4.1-1) ... Setting up gettext (0.19.8.1-1) ... Setting up flex (2.6.1-1) ... Setting up libgvpr2 (2.38.0-15) ... Setting up libgnutls30:amd64 (3.5.3-3) ... Setting up libnss3:amd64 (2:3.26-1) ... Setting up libasan2:amd64 (5.4.1-1) ... Setting up libharfbuzz0b:amd64 (1.2.7-1+b1) ... Setting up preview-latex-style (11.88-1.1) ... update-language: texlive-base not installed and configured, doing nothing! Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done. Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done. update-fmtutil has updated the following file(s): /var/lib/texmf/fmtutil.cnf-DEBIAN /var/lib/texmf/fmtutil.cnf-TEXLIVEDIST If you want to activate the changes in the above file(s), you should run fmtutil-sys or fmtutil. Setting up autoconf (2.69-10) ... Setting up libthai0:amd64 (0.1.25-1) ... Setting up file (1:5.28-4) ... Setting up libkrb5support0:amd64 (1.14.3+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2+b2) ... Setting up libgcc-5-dev:amd64 (5.4.1-1) ... Setting up automake (1:1.15-4) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:amd64 (0.6.32-1) ... Setting up libxcb1:amd64 (1.11.1-1.1) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-2) ... Setting up libstdc++-5-dev:amd64 (5.4.1-1) ... Setting up libobjc-5-dev:amd64 (5.4.1-1) ... Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:amd64 (2.11.0-6.7) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libk5crypto3:amd64 (1.14.3+dfsg-1) ... Setting up libxcb-render0:amd64 (1.11.1-1.1) ... Setting up libharfbuzz-icu0:amd64 (1.2.7-1+b1) ... Setting up po-debconf (1.0.19) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up python2.7 (2.7.12-2) ... Setting up libpython-stdlib:amd64 (2.7.11-2) ... Setting up libclang1-3.6:amd64 (1:3.6.2-3) ... Setting up libxcb-shm0:amd64 (1.11.1-1.1) ... Setting up libxpm4:amd64 (1:3.5.11-1+b1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libavahi-client3:amd64 (0.6.32-1) ... Setting up libkrb5-3:amd64 (1.14.3+dfsg-1) ... Setting up libpoppler61:amd64 (0.44.0-3) ... Setting up python (2.7.11-2) ... Setting up fontconfig (2.11.0-6.7) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up doxygen (1.8.11-3) ... Setting up libgd3:amd64 (2.2.3-3+b1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ... Setting up libpango-1.0-0:amd64 (1.40.1-1) ... Setting up libcups2:amd64 (2.1.4-4) ... Setting up libxi6:amd64 (2:1.7.6-1) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up libcairo2:amd64 (1.14.6-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ... Setting up libgvc6 (2.38.0-15) ... Setting up graphviz (2.38.0-15) ... Setting up libcupsfilters1:amd64 (1.10.0-1) ... Setting up libcupsimage2:amd64 (2.1.4-4) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up libgs9 (9.19~dfsg-2) ... Setting up debhelper (9.20160814) ... Setting up dh-autoreconf (12) ... Setting up texlive-binaries (2016.20160513.41080-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Processing triggers for tex-common (6.05) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil --all call Setting up texlive-base (2016.20160819-2) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-base (2016.20160819-2) ... Setting up texlive-fonts-recommended (2016.20160819-2) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-recommended (2016.20160819-2) ... Setting up texlive-pictures (2016.20160819-2) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2016.20160819-1) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.27-6 dpkg-dev_1.18.10 g++-6_6.2.0-1 gcc-6_6.2.0-1 libc6-dev_2.23-5 libstdc++-5-dev_5.4.1-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 linux-libc-dev_4.7.2-1 Package versions: adduser_3.115 apt_1.3~rc2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6 base-passwd_3.5.40 bash_4.3-15 binutils_2.27-6 bison_2:3.0.4.dfsg-1 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 clang-3.8_1:3.8.1-9 coreutils_8.25-2 cpp_4:6.1.1-1 cpp-6_6.2.0-1 d-shlibs_0.75 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debian-archive-keyring_2014.3 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 doxygen_1.8.11-3 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 eatmydata_105-3 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 flex_2.6.1-1 fontconfig_2.11.0-6.7 fontconfig-config_2.11.0-6.7 fonts-dejavu-core_2.37-1 g++_4:6.1.1-1 g++-6_6.2.0-1 gcc_4:6.1.1-1 gcc-5-base_5.4.1-1 gcc-6_6.2.0-1 gcc-6-base_6.2.0-1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gpgv_2.1.14-5 graphviz_2.38.0-15 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init-system-helpers_1.42 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapt-pkg5.0_1.3~rc2 libarchive-zip-perl_1.59-1 libasan2_5.4.1-1 libasan3_6.2.0-1 libatomic1_6.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libavahi-client3_0.6.32-1 libavahi-common-data_0.6.32-1 libavahi-common3_0.6.32-1 libbison-dev_2:3.0.4.dfsg-1 libblkid1_2.28.1-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-5 libc-dev-bin_2.23-5 libc6_2.23-5 libc6-dev_2.23-5 libcairo2_1.14.6-1+b1 libcap-ng0_0.7.7-3 libcc1-0_6.2.0-1 libcdt5_2.38.0-15 libcgraph6_2.38.0-15 libcilkrts5_6.2.0-1 libclang-common-3.8-dev_1:3.8.1-9 libclang1-3.6_1:3.6.2-3 libclang1-3.8_1:3.8.1-9 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcups2_2.1.4-4 libcupsfilters1_1.10.0-1 libcupsimage2_2.1.4-4 libdatrie1_0.2.10-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.10-1 libdebconfclient0_0.215 libdpkg-perl_1.18.10 libeatmydata1_105-3 libedit2_3.1-20150325-1+b1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libfl-dev_2.6.1-1 libfontconfig1_2.11.0-6.7 libfreetype6_2.6.3-3+b1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.1-1 libgcc-6-dev_6.2.0-1 libgcc1_1:6.2.0-1 libgcrypt20_1.7.3-1 libgd3_2.2.3-3+b1 libgdbm3_1.8.3-14 libglib2.0-0_2.48.1-3 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-3 libgomp1_6.2.0-1 libgpg-error0_1.24-1 libgraphite2-3_1.3.8-1 libgs9_9.19~dfsg-2 libgs9-common_9.19~dfsg-2 libgssapi-krb5-2_1.14.3+dfsg-1 libgts-0.7-5_0.7.6+darcs121130-1.2 libgvc6_2.38.0-15 libgvpr2_2.38.0-15 libharfbuzz-icu0_1.2.7-1+b1 libharfbuzz0b_1.2.7-1+b1 libhogweed4_3.2-1 libice6_2:1.0.9-1+b1 libicu57_57.1-3 libidn11_1.33-1 libijs-0.35_0.35-12 libisl15_0.17.1-1 libitm1_6.2.0-1 libjbig0_2.1-3.1 libjbig2dec0_0.13-3 libjpeg62-turbo_1:1.5.0-1 libk5crypto3_1.14.3+dfsg-1 libkeyutils1_1.5.9-9 libkpathsea6_2016.20160513.41080-6 libkrb5-3_1.14.3+dfsg-1 libkrb5support0_1.14.3+dfsg-1 liblcms2-2_2.7-1 libldap-2.4-2_2.4.42+dfsg-2+b2 libllvm3.6v5_1:3.6.2-3 libllvm3.8_1:3.8.1-9 liblsan0_6.2.0-1 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libmpx0_5.4.1-1 libmpx2_6.2.0-1 libncurses5_6.0+20160625-1 libncursesw5_6.0+20160625-1 libnettle6_3.2-1 libnspr4_2:4.12-6 libnss3_2:3.26-1 libobjc-5-dev_5.4.1-1 libobjc-6-dev_6.2.0-1 libobjc4_6.2.0-1 libopenjp2-7_2.1.1-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpango-1.0-0_1.40.1-1 libpangocairo-1.0-0_1.40.1-1 libpangoft2-1.0-0_1.40.1-1 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpathplan4_2.38.0-15 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng16-16_1.6.24-2 libpoppler61_0.44.0-3 libpotrace0_1.13-2 libptexenc1_2016.20160513.41080-6 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-2 libpython2.7-stdlib_2.7.12-2 libquadmath0_6.2.0-1 libreadline6_6.3-8+b4 librostlab3_1.0.20-6 librostlab3-dev_1.0.20-6 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsm6_2:1.2.2-1+b1 libsmartcols1_2.28.1-1 libsqlite3-0_3.14.1-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-5-dev_5.4.1-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 libsynctex1_2016.20160513.41080-6 libsystemd0_231-5 libtasn1-6_4.9-4 libtexlua52_2016.20160513.41080-6 libtexluajit2_2016.20160513.41080-6 libthai-data_0.1.25-1 libthai0_0.1.25-1 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtool_2.4.6-2 libtsan0_6.2.0-1 libubsan0_6.2.0-1 libudev1_231-5 libunistring0_0.9.6+really0.9.3-0.1 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libwebp6_0.5.1-2 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.11.1-1.1 libxcb-shm0_1.11.1-1.1 libxcb1_1.11.1-1.1 libxdmcp6_1:1.1.2-1.1 libxdot4_2.38.0-15 libxext6_2:1.3.3-1 libxi6_2:1.7.6-1 libxml2_2.9.4+dfsg1-1+b1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1+b1 libxrender1_1:0.9.9-2 libxt6_1:1.1.5-1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 lsb-base_9.20160629 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.1-1 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 poppler-data_0.4.7-7 preview-latex-style_11.88-1.1 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-2 python2.7-minimal_2.7.12-2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 t1utils_1.39-2 tar_1.29b-1 tex-common_6.05 texlive-base_2016.20160819-2 texlive-binaries_2016.20160513.41080-6 texlive-fonts-recommended_2016.20160819-2 texlive-latex-base_2016.20160819-2 texlive-latex-extra_2016.20160819-1 texlive-latex-recommended_2016.20160819-2 texlive-pictures_2016.20160819-2 ucf_3.0036 util-linux_2.28.1-1 x11-common_1:7.7+16 xdg-utils_1.1.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 6 07:20:25 2016 UTC using RSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-7.dsc dpkg-source: info: extracting librostlab-blast in /<> dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-7.debian.tar.xz dpkg-source: info: applying reproducible.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-13aed693-605c-4c88-8365-aa608706c275 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package librostlab-blast dpkg-buildpackage: info: source version 1.0.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Tatiana Malygina dpkg-source --before-build librostlab-blast-1.0.1 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean --parallel rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --parallel --with autoreconf dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --parallel make -j1 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in lib make[4]: Entering directory '/<>/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /<>/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ /<>/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex make all-am make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from blast-parser-driver.cpp:19: ./rostlab/blast-parser-driver.h:61:12: warning: use of enumeration in a nested name specifier is a C++11 extension [-Wc++11-extensions] friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ ./rostlab/blast-parser-driver.h:61:12: error: no function named 'yylex' with type 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::parser::location_type *, rostlab::blast::parser_driver &, void *)' (aka 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::location *, rostlab::blast::parser_driver &, void *)') was found in the specified scope ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 1 warning and 6 errors generated. Makefile:550: recipe for target 'librostlab_blast_la-blast-parser-driver.lo' failed make[5]: *** [librostlab_blast_la-blast-parser-driver.lo] Error 1 make[5]: Leaving directory '/<>/lib' Makefile:440: recipe for target 'all' failed make[4]: *** [all] Error 2 make[4]: Leaving directory '/<>/lib' Makefile:482: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/<>' Makefile:393: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: make -j1 returned exit code 2 debian/rules:25: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' debian/rules:11: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T16:05:26Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 12 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 50 Job: librostlab-blast_1.0.1-7 Machine Architecture: amd64 Package: librostlab-blast Package-Time: 88 Source-Version: 1.0.1-7 Space: 0 Status: failed Version: 1.0.1-7 -------------------------------------------------------------------------------- Finished at 2016-08-29T16:05:26Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 89.15031071s DC-Time-Estimation: 89.15031071 versus expected 786 (r/m: 7.816570505926844 ; m: 89.15031071)