DC-Build-Header: molds 0.3.1-1 / 2016-08-29 16:26:11 +0000 DC-Task: type:rebuild-binarch-only source:molds version:0.3.1-1 chroot:unstable esttime:485 logfile:/tmp/molds_0.3.1-1_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang molds_0.3.1-1' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-15-104.eu-central-1.compute.internal +==============================================================================+ | molds 0.3.1-1 (amd64) Mon, 29 Aug 2016 16:26:11 +0000 | +==============================================================================+ Package: molds Version: 0.3.1-1 Source Version: 0.3.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-625a1829-b92f-4369-8fd0-1671c12deb65' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 3s (1711 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 0s (95.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/molds-KpEgFG + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (67.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'molds' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debichem/unstable/molds/ Need to get 1056 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main molds 0.3.1-1 (dsc) [2044 B] Get:2 http://127.0.0.1:9999/debian unstable/main molds 0.3.1-1 (tar) [1049 kB] Get:3 http://127.0.0.1:9999/debian unstable/main molds 0.3.1-1 (diff) [4956 B] Fetched 1056 kB in 0s (6833 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/molds-KpEgFG/molds-0.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/molds-KpEgFG' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Bui9kw/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Bui9kw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Bui9kw/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Bui9kw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Bui9kw/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Bui9kw/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Bui9kw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 7.0.50~), ruby, gawk, libopenblas-dev, liblapacke-dev, libblas-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, libboost-thread-dev, mpi-default-bin, mpi-default-dev Filtered Build-Depends: debhelper (>= 7.0.50~), ruby, gawk, libopenblas-dev, liblapacke-dev, libblas-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, libboost-thread-dev, mpi-default-bin, mpi-default-dev dpkg-deb: building package 'sbuild-build-depends-molds-dummy' in '/<>/resolver-Q2Olx5/apt_archive/sbuild-build-depends-molds-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-molds-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Q2Olx5/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Q2Olx5/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Q2Olx5/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Q2Olx5/apt_archive ./ Sources [416 B] Get:5 copy:/<>/resolver-Q2Olx5/apt_archive ./ Packages [508 B] Fetched 1881 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install molds build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gawk gettext gettext-base gfortran gfortran-6 groff-base intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-atomic1.61-dev libboost-atomic1.61.0 libboost-chrono1.61-dev libboost-chrono1.61.0 libboost-date-time1.61-dev libboost-date-time1.61.0 libboost-dev libboost-mpi-dev libboost-mpi1.61-dev libboost-mpi1.61.0 libboost-serialization-dev libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-system1.61-dev libboost-system1.61.0 libboost-thread-dev libboost-thread1.61-dev libboost-thread1.61.0 libboost1.61-dev libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 liblapacke liblapacke-dev libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenblas-base libopenblas-dev libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1 libreadline6 libruby2.3 libsigsegv2 libssl1.0.2 libtimedate-perl libtmglib-dev libtmglib3 libtool libunistring0 libxml2 libyaml-0-2 m4 man-db mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssl po-debconf rake readline-common ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc-man liblapack-doc libboost-doc libboost-graph1.61-dev libboost1.61-doc libboost-context1.61-dev libboost-coroutine1.61-dev libboost-exception1.61-dev libboost-filesystem1.61-dev libboost-graph-parallel1.61-dev libboost-iostreams1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-python1.61-dev libboost-random1.61-dev libboost-regex1.61-dev libboost-signals1.61-dev libboost-test1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev libhwloc-contrib-plugins libtool-doc opennmpi-doc pciutils gcj-jdk less www-browser opencl-icd libmail-box-perl readline-doc ri ruby-dev bundler Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gawk gettext gettext-base gfortran gfortran-6 groff-base intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-atomic1.61-dev libboost-atomic1.61.0 libboost-chrono1.61-dev libboost-chrono1.61.0 libboost-date-time1.61-dev libboost-date-time1.61.0 libboost-dev libboost-mpi-dev libboost-mpi1.61-dev libboost-mpi1.61.0 libboost-serialization-dev libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-system1.61-dev libboost-system1.61.0 libboost-thread-dev libboost-thread1.61-dev libboost-thread1.61.0 libboost1.61-dev libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 liblapacke liblapacke-dev libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenblas-base libopenblas-dev libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1 libreadline6 libruby2.3 libsigsegv2 libssl1.0.2 libtimedate-perl libtmglib-dev libtmglib3 libtool libunistring0 libxml2 libyaml-0-2 m4 man-db mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssl po-debconf rake readline-common ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration sbuild-build-depends-molds-dummy 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 80.1 MB of archives. After this operation, 486 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Q2Olx5/apt_archive ./ sbuild-build-depends-molds-dummy 0.invalid.0 [848 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 6.3-8 [57.7 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6 amd64 6.3-8+b4 [142 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gawk amd64 1:4.1.3+dfsg-0.1 [545 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 openssl amd64 1.0.2h-1 [681 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 ca-certificates all 20160104 [200 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.2.0-1 [264 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran-6-dev amd64 6.2.0-1 [295 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 gfortran-6 amd64 6.2.0-1 [31.7 MB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 gfortran amd64 4:6.1.1-1 [1352 B] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libblas-common amd64 3.6.1-2 [13.9 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.6.1-2 [157 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libblas-dev amd64 3.6.1-2 [18.9 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.61-dev amd64 1.61.0+dfsg-2.1 [6843 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.61.0 amd64 1.61.0+dfsg-2.1 [30.2 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.61-dev amd64 1.61.0+dfsg-2.1 [29.0 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.61.0 amd64 1.61.0+dfsg-2.1 [32.1 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.61.0 amd64 1.61.0+dfsg-2.1 [35.8 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.61-dev amd64 1.61.0+dfsg-2.1 [36.0 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.61.0 amd64 1.61.0+dfsg-2.1 [42.6 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.61.0 amd64 1.61.0+dfsg-2.1 [125 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.61-dev amd64 1.61.0+dfsg-2.1 [160 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.61-dev amd64 1.61.0+dfsg-2.1 [49.6 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.61.0.2 [3746 B] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-1 [32.5 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.3-2 [104 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-1 [61.4 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-1 [135 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 1.2.0-2 [37.7 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1 [49.8 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.9-1 [36.1 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.3-2 [16.0 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi1.10 amd64 1.10.3-3 [2109 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi1.61.0 amd64 1.61.0+dfsg-2.1 [70.4 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 1.10.3-3 [143 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 1.2.0-2 [93.7 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-1 [45.5 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.3-2 [161 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 1.10.3-3 [628 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-dev amd64 1.7 [4786 B] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi1.61-dev amd64 1.61.0+dfsg-2.1 [152 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-dev amd64 1.61.0.2 [3470 B] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization-dev amd64 1.61.0.2 [3614 B] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.61-dev amd64 1.61.0+dfsg-2.1 [32.7 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.61.0 amd64 1.61.0+dfsg-2.1 [71.2 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.61-dev amd64 1.61.0+dfsg-2.1 [70.0 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread-dev amd64 1.61.0.2 [3412 B] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libopenblas-base amd64 0.2.18-1 [5101 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libtmglib3 amd64 3.6.1-2 [131 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 liblapacke amd64 3.6.1-2 [341 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libopenblas-dev amd64 0.2.18-1 [3313 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libtmglib-dev amd64 3.6.1-2 [132 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 liblapacke-dev amd64 3.6.1-2 [307 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 rubygems-integration all 1.10 [4882 B] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libruby2.3 amd64 2.3.1-5 [3093 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 ruby2.3 amd64 2.3.1-5 [178 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 ruby amd64 1:2.3.0+4 [10.5 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 rake all 10.5.0-2 [49.4 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-bin amd64 1.10.3-3 [193 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-bin amd64 1.7 [3982 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.1 MB in 1s (62.5 MB/s) Selecting previously unselected package groff-base. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../0-groff-base_1.22.3-8_amd64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_9.0.10_amd64.deb ... Unpacking bsdmainutils (9.0.10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../2-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../3-man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_6.3-8_all.deb ... Unpacking readline-common (6.3-8) ... Selecting previously unselected package libreadline6:amd64. Preparing to unpack .../5-libreadline6_6.3-8+b4_amd64.deb ... Unpacking libreadline6:amd64 (6.3-8+b4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../6-libsigsegv2_2.10-5_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-5) ... Setting up readline-common (6.3-8) ... Setting up libreadline6:amd64 (6.3-8+b4) ... Setting up libsigsegv2:amd64 (2.10-5) ... Selecting previously unselected package gawk. (Reading database ... 10357 files and directories currently installed.) Preparing to unpack .../00-gawk_1%3a4.1.3+dfsg-0.1_amd64.deb ... Unpacking gawk (1:4.1.3+dfsg-0.1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../01-libyaml-0-2_0.1.6-3_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.6-3) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../02-libssl1.0.2_1.0.2h-1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2h-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.28-4_amd64.deb ... Unpacking libmagic-mgc (1:5.28-4) ... Selecting previously unselected package libmagic1:amd64. 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Unpacking sbuild-build-depends-molds-dummy (0.invalid.0) ... Setting up libboost-system1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libblas-common (3.6.1-2) ... Setting up libboost-date-time1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libnuma1:amd64 (2.0.11-1) ... Setting up libgfortran3:amd64 (6.2.0-1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.48.1-3) ... No schema files found: doing nothing. Setting up libgfortran-6-dev:amd64 (6.2.0-1) ... Setting up gettext-base (0.19.8.1-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up gawk (1:4.1.3+dfsg-0.1) ... Setting up libicu57:amd64 (57.1-3) ... Setting up libboost1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1+b1) ... Setting up libmagic-mgc (1:5.28-4) ... Setting up libmagic1:amd64 (1:5.28-4) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up libboost-atomic1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libssl1.0.2:amd64 (1.0.2h-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up libboost-atomic1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libblas3 (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up openmpi-common (1.10.3-3) ... Processing triggers for libc-bin (2.23-5) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up openssl (1.0.2h-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libpciaccess0:amd64 (0.13.4-1) ... Setting up libboost-chrono1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-dev:amd64 (1.61.0.2) ... Setting up libnuma-dev:amd64 (2.0.11-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.9-1) ... Setting up bsdmainutils (9.0.10) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-1) ... Setting up ruby-minitest (5.9.0-1) ... Setting up ca-certificates (20160104) ... Setting up libboost-serialization1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up autopoint (0.19.8.1-1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up libopenblas-base (0.2.18-1) ... update-alternatives: using /usr/lib/openblas-base/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/openblas-base/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libboost-system1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-thread1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up gfortran-6 (6.2.0-1) ... Setting up libtmglib3 (3.6.1-2) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up gettext (0.19.8.1-1) ... Setting up libboost-serialization1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libnl-route-3-200:amd64 (3.2.27-1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-4) ... Setting up libhwloc5:amd64 (1.11.3-2) ... Setting up libboost-chrono1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libhwloc-plugins (1.11.3-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-date-time1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up automake (1:1.15-4) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up rubygems-integration (1.10) ... Setting up liblapacke (3.6.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up gfortran (4:6.1.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libibverbs1 (1.2.0-2) ... Setting up libboost-serialization-dev:amd64 (1.61.0.2) ... Setting up libboost-thread1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-thread-dev:amd64 (1.61.0.2) ... Setting up po-debconf (1.0.19) ... Setting up libhwloc-dev:amd64 (1.11.3-2) ... Setting up libblas-dev (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libopenmpi1.10 (1.10.3-3) ... Setting up libopenblas-dev (0.2.18-1) ... update-alternatives: using /usr/lib/openblas-base/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode update-alternatives: using /usr/lib/openblas-base/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libibverbs-dev (1.2.0-2) ... Setting up libtmglib-dev (3.6.1-2) ... Setting up libboost-mpi1.61.0 (1.61.0+dfsg-2.1) ... Setting up libopenmpi-dev (1.10.3-3) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up liblapacke-dev (3.6.1-2) ... Setting up openmpi-bin (1.10.3-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-dev (1.7) ... Setting up mpi-default-bin (1.7) ... Setting up libboost-mpi1.61-dev (1.61.0+dfsg-2.1) ... Setting up libboost-mpi-dev (1.61.0.2) ... Setting up dh-autoreconf (12) ... Setting up rake (10.5.0-2) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up libruby2.3:amd64 (2.3.1-5) ... Setting up debhelper (9.20160814) ... Setting up ruby2.3 (2.3.1-5) ... Setting up ruby (1:2.3.0+4) ... Setting up sbuild-build-depends-molds-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... Processing triggers for ca-certificates (20160104) ... Updating certificates in /etc/ssl/certs... 173 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.27-6 dpkg-dev_1.18.10 g++-6_6.2.0-1 gcc-6_6.2.0-1 libc6-dev_2.23-5 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 linux-libc-dev_4.7.2-1 Package versions: adduser_3.115 apt_1.3~rc2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6 base-passwd_3.5.40 bash_4.3-15 binutils_2.27-6 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20160104 clang-3.8_1:3.8.1-9 coreutils_8.25-2 cpp_4:6.1.1-1 cpp-6_6.2.0-1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debian-archive-keyring_2014.3 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 eatmydata_105-3 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1 g++-6_6.2.0-1 gawk_1:4.1.3+dfsg-0.1 gcc_4:6.1.1-1 gcc-6_6.2.0-1 gcc-6-base_6.2.0-1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.2.0-1 gpgv_2.1.14-5 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init-system-helpers_1.42 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapt-pkg5.0_1.3~rc2 libarchive-zip-perl_1.59-1 libasan3_6.2.0-1 libatomic1_6.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28.1-1 libboost-atomic1.61-dev_1.61.0+dfsg-2.1 libboost-atomic1.61.0_1.61.0+dfsg-2.1 libboost-chrono1.61-dev_1.61.0+dfsg-2.1 libboost-chrono1.61.0_1.61.0+dfsg-2.1 libboost-date-time1.61-dev_1.61.0+dfsg-2.1 libboost-date-time1.61.0_1.61.0+dfsg-2.1 libboost-dev_1.61.0.2 libboost-mpi-dev_1.61.0.2 libboost-mpi1.61-dev_1.61.0+dfsg-2.1 libboost-mpi1.61.0_1.61.0+dfsg-2.1 libboost-serialization-dev_1.61.0.2 libboost-serialization1.61-dev_1.61.0+dfsg-2.1 libboost-serialization1.61.0_1.61.0+dfsg-2.1 libboost-system1.61-dev_1.61.0+dfsg-2.1 libboost-system1.61.0_1.61.0+dfsg-2.1 libboost-thread-dev_1.61.0.2 libboost-thread1.61-dev_1.61.0+dfsg-2.1 libboost-thread1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-5 libc-dev-bin_2.23-5 libc6_2.23-5 libc6-dev_2.23-5 libcap-ng0_0.7.7-3 libcc1-0_6.2.0-1 libcilkrts5_6.2.0-1 libclang-common-3.8-dev_1:3.8.1-9 libclang1-3.8_1:3.8.1-9 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libdb5.3_5.3.28-12 libdebconfclient0_0.215 libdpkg-perl_1.18.10 libeatmydata1_105-3 libedit2_3.1-20150325-1+b1 libfakeroot_1.21-1 libfdisk1_2.28.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.0-1 libgcc1_1:6.2.0-1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-1 libgfortran3_6.2.0-1 libglib2.0-0_2.48.1-3 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.2.0-1 libgpg-error0_1.24-1 libhwloc-dev_1.11.3-2 libhwloc-plugins_1.11.3-2 libhwloc5_1.11.3-2 libibverbs-dev_1.2.0-2 libibverbs1_1.2.0-2 libicu57_57.1-3 libisl15_0.17.1-1 libitm1_6.2.0-1 liblapacke_3.6.1-2 liblapacke-dev_3.6.1-2 libllvm3.8_1:3.8.1-9 liblsan0_6.2.0-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libmpx2_6.2.0-1 libncurses5_6.0+20160625-1 libncursesw5_6.0+20160625-1 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libnuma-dev_2.0.11-1 libnuma1_2.0.11-1 libobjc-6-dev_6.2.0-1 libobjc4_6.2.0-1 libopenblas-base_0.2.18-1 libopenblas-dev_0.2.18-1 libopenmpi-dev_1.10.3-3 libopenmpi1.10_1.10.3-3 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpciaccess0_0.13.4-1 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libquadmath0_6.2.0-1 libreadline6_6.3-8+b4 libruby2.3_2.3.1-5 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28.1-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 libsystemd0_231-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtmglib-dev_3.6.1-2 libtmglib3_3.6.1-2 libtool_2.4.6-2 libtsan0_6.2.0-1 libubsan0_6.2.0-1 libudev1_231-5 libunistring0_0.9.6+really0.9.3-0.1 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libxml2_2.9.4+dfsg1-1+b1 libyaml-0-2_0.1.6-3 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mount_2.28.1-1 mpi-default-bin_1.7 mpi-default-dev_1.7 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 ocl-icd-libopencl1_2.2.9-1 openmpi-bin_1.10.3-3 openmpi-common_1.10.3-3 openssl_1.0.2h-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 rake_10.5.0-2 readline-common_6.3-8 ruby_1:2.3.0+4 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.9.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.1.7-2 ruby2.3_2.3.1-5 rubygems-integration_1.10 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-molds-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 util-linux_2.28.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 26 19:15:58 2014 UTC using RSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./molds_0.3.1-1.dsc dpkg-source: info: extracting molds in /<> dpkg-source: info: unpacking molds_0.3.1.orig.tar.gz dpkg-source: info: unpacking molds_0.3.1-1.debian.tar.xz dpkg-source: info: applying makefile_flags.patch dpkg-source: info: applying testsuite_output.patch dpkg-source: info: applying fix-ftbfs-with-GCC-4.9.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-625a1829-b92f-4369-8fd0-1671c12deb65 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package molds dpkg-buildpackage: info: source version 0.3.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build molds-0.3.1 dpkg-buildpackage: info: host architecture amd64 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' (cd src; make -f Makefile_GNU clean) make[2]: Entering directory '/<>/src' mpicxx -MM base/Enums.cpp base/PrintController.cpp base/MolDSException.cpp base/MallocerFreer.cpp mpi/MpiProcess.cpp mpi/AsyncCommunicator.cpp wrappers/Blas.cpp wrappers/Lapack.cpp base/Utilities.cpp base/MathUtilities.cpp base/EularAngle.cpp base/Parameters.cpp base/atoms/Atom.cpp base/atoms/Hatom.cpp base/atoms/Liatom.cpp base/atoms/Catom.cpp base/atoms/Natom.cpp base/atoms/Oatom.cpp base/atoms/Satom.cpp base/atoms/mm/EnvironmentalPointCharge.cpp base/factories/AtomFactory.cpp base/Molecule.cpp base/InputParser.cpp base/GTOExpansionSTO.cpp base/RealSphericalHarmonicsIndex.cpp base/loggers/MOLogger.cpp base/loggers/DensityLogger.cpp base/loggers/HoleDensityLogger.cpp base/loggers/ParticleDensityLogger.cpp cndo/Cndo2.cpp indo/Indo.cpp zindo/ZindoS.cpp mndo/Mndo.cpp am1/Am1.cpp am1/Am1D.cpp pm3/Pm3.cpp pm3/Pm3D.cpp pm3/Pm3Pddg.cpp base/factories/ElectronicStructureFactory.cpp md/MD.cpp mc/MC.cpp rpmd/RPMD.cpp nasco/NASCO.cpp optimization/Optimizer.cpp optimization/ConjugateGradient.cpp optimization/SteepestDescent.cpp optimization/BFGS.cpp optimization/GEDIIS.cpp base/factories/OptimizerFactory.cpp base/MolDS.cpp Main.cpp -I/usr/include/mpi -I/usr/lib/openblas-base//include/ | sed 's/^\([^ ]\)/obj\/\1/g' | sed 's/\($*\)\.o[ :]*/\1.o : /g' > obj/objfile.dep clang: warning: -Wl,-rpath: 'linker' input unused clang: warning: -Wl,/usr/lib/openmpi/lib: 'linker' input unused clang: warning: -Wl,--enable-new-dtags: 'linker' input unused clang: warning: -lmpi_cxx: 'linker' input unused clang: warning: -lmpi: 'linker' input unused clang: warning: argument unused during compilation: '-L/usr/lib/openmpi/lib' In file included from base/PrintController.cpp:30: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/MallocerFreer.cpp:34: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. mpi/MpiProcess.cpp:26:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from mpi/AsyncCommunicator.cpp:34: mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from wrappers/Blas.cpp:34: wrappers/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from wrappers/Lapack.cpp:33: wrappers/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/Utilities.cpp:26:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/MathUtilities.cpp:33: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/Parameters.cpp:36: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Atom.cpp:35: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Hatom.cpp:33: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Liatom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Catom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Natom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Oatom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Satom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/mm/EnvironmentalPointCharge.cpp:32: base/atoms/mm/../../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/factories/AtomFactory.cpp:32: base/factories/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/Molecule.cpp:27:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/InputParser.cpp:37: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/MOLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/DensityLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/HoleDensityLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/ParticleDensityLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. cndo/Cndo2.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from indo/Indo.cpp:35: indo/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. zindo/ZindoS.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. mndo/Mndo.cpp:27:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from am1/Am1.cpp:33: am1/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from am1/Am1D.cpp:32: am1/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from pm3/Pm3.cpp:33: pm3/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from pm3/Pm3D.cpp:33: pm3/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from pm3/Pm3Pddg.cpp:33: pm3/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/factories/ElectronicStructureFactory.cpp:33: base/factories/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from md/MD.cpp:36: md/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from mc/MC.cpp:36: mc/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from rpmd/RPMD.cpp:36: rpmd/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from nasco/NASCO.cpp:36: nasco/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/Optimizer.cpp:37: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/ConjugateGradient.cpp:36: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/SteepestDescent.cpp:36: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/BFGS.cpp:39: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/GEDIIS.cpp:38: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/factories/OptimizerFactory.cpp:34: base/factories/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/MolDS.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from Main.cpp:32: ./mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. rm -f obj/Enums.o obj/PrintController.o obj/MolDSException.o obj/MallocerFreer.o obj/MpiProcess.o obj/AsyncCommunicator.o obj/Blas.o obj/Lapack.o obj/Utilities.o obj/MathUtilities.o obj/EularAngle.o obj/Parameters.o obj/Atom.o obj/Hatom.o obj/Liatom.o obj/Catom.o obj/Natom.o obj/Oatom.o obj/Satom.o obj/EnvironmentalPointCharge.o obj/AtomFactory.o obj/Molecule.o obj/InputParser.o obj/GTOExpansionSTO.o obj/RealSphericalHarmonicsIndex.o obj/MOLogger.o obj/DensityLogger.o obj/HoleDensityLogger.o obj/ParticleDensityLogger.o obj/Cndo2.o obj/Indo.o obj/ZindoS.o obj/Mndo.o obj/Am1.o obj/Am1D.o obj/Pm3.o obj/Pm3D.o obj/Pm3Pddg.o obj/ElectronicStructureFactory.o obj/MD.o obj/MC.o obj/RPMD.o obj/NASCO.o obj/Optimizer.o obj/ConjugateGradient.o obj/SteepestDescent.o obj/BFGS.o obj/GEDIIS.o obj/OptimizerFactory.o obj/MolDS.o obj/Main.o molds obj/objfile.dep make[2]: Leaving directory '/<>/src' rm -f test/temp.dat make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' (cd src; make -f Makefile_GNU) make[2]: Entering directory '/<>/src' mpicxx -MM base/Enums.cpp base/PrintController.cpp base/MolDSException.cpp base/MallocerFreer.cpp mpi/MpiProcess.cpp mpi/AsyncCommunicator.cpp wrappers/Blas.cpp wrappers/Lapack.cpp base/Utilities.cpp base/MathUtilities.cpp base/EularAngle.cpp base/Parameters.cpp base/atoms/Atom.cpp base/atoms/Hatom.cpp base/atoms/Liatom.cpp base/atoms/Catom.cpp base/atoms/Natom.cpp base/atoms/Oatom.cpp base/atoms/Satom.cpp base/atoms/mm/EnvironmentalPointCharge.cpp base/factories/AtomFactory.cpp base/Molecule.cpp base/InputParser.cpp base/GTOExpansionSTO.cpp base/RealSphericalHarmonicsIndex.cpp base/loggers/MOLogger.cpp base/loggers/DensityLogger.cpp base/loggers/HoleDensityLogger.cpp base/loggers/ParticleDensityLogger.cpp cndo/Cndo2.cpp indo/Indo.cpp zindo/ZindoS.cpp mndo/Mndo.cpp am1/Am1.cpp am1/Am1D.cpp pm3/Pm3.cpp pm3/Pm3D.cpp pm3/Pm3Pddg.cpp base/factories/ElectronicStructureFactory.cpp md/MD.cpp mc/MC.cpp rpmd/RPMD.cpp nasco/NASCO.cpp optimization/Optimizer.cpp optimization/ConjugateGradient.cpp optimization/SteepestDescent.cpp optimization/BFGS.cpp optimization/GEDIIS.cpp base/factories/OptimizerFactory.cpp base/MolDS.cpp Main.cpp -I/usr/include/mpi -I/usr/lib/openblas-base//include/ | sed 's/^\([^ ]\)/obj\/\1/g' | sed 's/\($*\)\.o[ :]*/\1.o : /g' > obj/objfile.dep clang: warning: -Wl,-rpath: 'linker' input unused clang: warning: -Wl,/usr/lib/openmpi/lib: 'linker' input unused clang: warning: -Wl,--enable-new-dtags: 'linker' input unused clang: warning: -lmpi_cxx: 'linker' input unused clang: warning: -lmpi: 'linker' input unused clang: warning: argument unused during compilation: '-L/usr/lib/openmpi/lib' In file included from base/PrintController.cpp:30: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/MallocerFreer.cpp:34: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. mpi/MpiProcess.cpp:26:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from mpi/AsyncCommunicator.cpp:34: mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from wrappers/Blas.cpp:34: wrappers/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from wrappers/Lapack.cpp:33: wrappers/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/Utilities.cpp:26:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/MathUtilities.cpp:33: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/Parameters.cpp:36: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Atom.cpp:35: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Hatom.cpp:33: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Liatom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Catom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Natom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Oatom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/Satom.cpp:32: base/atoms/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/atoms/mm/EnvironmentalPointCharge.cpp:32: base/atoms/mm/../../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/factories/AtomFactory.cpp:32: base/factories/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/Molecule.cpp:27:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/InputParser.cpp:37: base/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/MOLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/DensityLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/HoleDensityLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/loggers/ParticleDensityLogger.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. cndo/Cndo2.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from indo/Indo.cpp:35: indo/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. zindo/ZindoS.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. mndo/Mndo.cpp:27:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from am1/Am1.cpp:33: am1/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from am1/Am1D.cpp:32: am1/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from pm3/Pm3.cpp:33: pm3/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from pm3/Pm3D.cpp:33: pm3/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from pm3/Pm3Pddg.cpp:33: pm3/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/factories/ElectronicStructureFactory.cpp:33: base/factories/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from md/MD.cpp:36: md/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from mc/MC.cpp:36: mc/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from rpmd/RPMD.cpp:36: rpmd/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from nasco/NASCO.cpp:36: nasco/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/Optimizer.cpp:37: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/ConjugateGradient.cpp:36: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/SteepestDescent.cpp:36: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/BFGS.cpp:39: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from optimization/GEDIIS.cpp:38: optimization/../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from base/factories/OptimizerFactory.cpp:34: base/factories/../../mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. base/MolDS.cpp:29:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. In file included from Main.cpp:32: ./mpi/MpiProcess.h:22:9: fatal error: 'omp.h' file not found #include ^ 1 error generated. mpicxx -I/usr/include/mpi -I/usr/lib/openblas-base//include/ -o obj/Enums.o base/Enums.cpp -g -Wall -fopenmp -O2 -fopenmp -c mpicxx -I/usr/include/mpi -I/usr/lib/openblas-base//include/ -o obj/PrintController.o -g -Wall -fopenmp -O2 -fopenmp -c clang: error: no input files Makefile_GNU:56: recipe for target 'obj/PrintController.o' failed make[2]: *** [obj/PrintController.o] Error 1 make[2]: Leaving directory '/<>/src' debian/rules:31: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' debian/rules:24: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T16:30:30Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 27 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 204 Job: molds_0.3.1-1 Machine Architecture: amd64 Package: molds Package-Time: 259 Source-Version: 0.3.1-1 Space: 0 Status: failed Version: 0.3.1-1 -------------------------------------------------------------------------------- Finished at 2016-08-29T16:30:30Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 259.560128422s DC-Time-Estimation: 259.560128422 versus expected 485 (r/m: 0.8685458469625723 ; m: 259.560128422)