DC-Build-Header: pymol 1.8.2.1+dfsg-1 / 2016-08-29 17:02:47 +0000 DC-Task: type:rebuild-binarch-only source:pymol version:1.8.2.1+dfsg-1 chroot:unstable esttime:123 logfile:/tmp/pymol_1.8.2.1+dfsg-1_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang pymol_1.8.2.1+dfsg-1' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-6-0.eu-central-1.compute.internal +==============================================================================+ | pymol 1.8.2.1+dfsg-1 (amd64) Mon, 29 Aug 2016 17:02:47 +0000 | +==============================================================================+ Package: pymol Version: 1.8.2.1+dfsg-1 Source Version: 1.8.2.1+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-ad00cac5-214a-4762-b130-181f9a4c555c' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 2s (1994 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 1s (21.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/pymol-Xz4rlX + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (70.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debichem/packages/pymol.git Please use: git clone https://anonscm.debian.org/git/debichem/packages/pymol.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6810 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main pymol 1.8.2.1+dfsg-1 (dsc) [2186 B] Get:2 http://127.0.0.1:9999/debian unstable/main pymol 1.8.2.1+dfsg-1 (tar) [6752 kB] Get:3 http://127.0.0.1:9999/debian unstable/main pymol 1.8.2.1+dfsg-1 (diff) [55.5 kB] Fetched 6810 kB in 0s (25.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pymol-Xz4rlX/pymol-1.8.2.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/pymol-Xz4rlX' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-413Ilf/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-413Ilf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-413Ilf/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-413Ilf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-413Ilf/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-413Ilf/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 774 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-413Ilf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 774 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libpng-dev, python, python-dev, python-numpy, texlive-latex-base, tk-dev, libxml2-dev Filtered Build-Depends: debhelper (>= 9), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libpng-dev, python, python-dev, python-numpy, texlive-latex-base, tk-dev, libxml2-dev dpkg-deb: building package 'sbuild-build-depends-pymol-dummy' in '/<>/resolver-KYSQcU/apt_archive/sbuild-build-depends-pymol-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-pymol-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-KYSQcU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KYSQcU/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-KYSQcU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KYSQcU/apt_archive ./ Sources [415 B] Get:5 copy:/<>/resolver-KYSQcU/apt_archive ./ Packages [504 B] Fetched 1876 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install pymol build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core freeglut3 freeglut3-dev gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew-dev libglew1.13 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls30 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice-dev libice6 libicu-dev libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libmagic-mgc libmagic1 libmpdec2 libnettle6 libnspr4 libnss3 libopenjp2-7 libp11-kit0 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpoppler61 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline6 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.0.2 libsynctex1 libtasn1-6 libtcl8.6 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtk8.6 libtool libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxml2 libxml2-dev libxmu6 libxpm4 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libzzip-0-13 lsb-base m4 man-db mesa-common-dev mime-support pkg-config po-debconf poppler-data python python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal readline-common t1utils tcl tcl-dev tcl8.6 tcl8.6-dev tex-common texlive-base texlive-binaries texlive-latex-base tk tk-dev tk8.6 tk8.6-dev tzdata ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff cups-common glew-utils gnutls-bin krb5-doc krb5-user libice-doc icu-doc liblcms2-utils pciutils libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc libxt-doc less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc readline-doc tcl-doc tcl-tclreadline tcl8.6-doc perl-tk gv | postscript-viewer xpdf-reader | pdf-viewer tk-doc tk8.6-doc gvfs-bin Recommended packages: curl | wget | lynx-cur dbus libgl1-mesa-dri libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libpng-tools libsasl2-modules libltdl-dev libx11-doc xml-core libmail-sendmail-perl lmodern ruby texlive-latex-base-doc xterm | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core freeglut3 freeglut3-dev gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew-dev libglew1.13 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls30 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhogweed4 libice-dev libice6 libicu-dev libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libmagic-mgc libmagic1 libmpdec2 libnettle6 libnspr4 libnss3 libopenjp2-7 libp11-kit0 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpoppler61 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline6 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.0.2 libsynctex1 libtasn1-6 libtcl8.6 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtk8.6 libtool libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxml2 libxml2-dev libxmu6 libxpm4 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libzzip-0-13 lsb-base m4 man-db mesa-common-dev mime-support pkg-config po-debconf poppler-data python python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal readline-common sbuild-build-depends-pymol-dummy t1utils tcl tcl-dev tcl8.6 tcl8.6-dev tex-common texlive-base texlive-binaries texlive-latex-base tk tk-dev tk8.6 tk8.6-dev tzdata ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 231 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After this operation, 482 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KYSQcU/apt_archive ./ sbuild-build-depends-pymol-dummy 0.invalid.0 [850 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.12-2 [387 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.12-2 [1348 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.11-2 [40.3 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 6.3-8 [57.7 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6 amd64 6.3-8+b4 [142 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.14.1-1 [559 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.12-2 [1875 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.12-2 [277 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.11-2 [19.8 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.11-2 [153 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20160629 [27.6 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+16 [251 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [26.2 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.11.1-1.1 [45.3 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.3-1 [128 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.3-1 [742 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.3-1 [176 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libxfixes3 amd64 1:5.0.2-1 [21.3 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.24-2 [279 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.6.3-3+b1 [437 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.11.0-6.7 [331 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.9-2 [31.8 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libxft2 amd64 2.3.2-1 [55.4 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libxpm4 amd64 1:3.5.11-1+b1 [48.1 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libxshmfence1 amd64 1.2-1 [7836 B] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [20.9 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libzzip-0-13 amd64 0.13.62-3 [55.5 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 poppler-data all 0.4.7-7 [1466 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.2-3 [568 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.2-3 [1644 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.1-4 [35.3 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.2-3 [2126 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.2-3 [214 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.1-4 [18.6 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20160818 [83.0 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.1-4 [21.6 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1 [30.7 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 tzdata all 2016f-1 [219 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libnettle6 amd64 3.2-1 [191 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libhogweed4 amd64 3.2-1 [136 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-1 [115 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libp11-kit0 amd64 0.23.2-5 [111 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libtasn1-6 amd64 4.9-4 [50.0 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libgnutls30 amd64 3.5.3-3 [801 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.14.3+dfsg-1 [61.0 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.14.3+dfsg-1 [115 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.14.3+dfsg-1 [311 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.14.3+dfsg-1 [154 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [66.9 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [103 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2+b2 [222 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libdrm2 amd64 2.4.70-1 [35.5 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libglapi-mesa amd64 11.2.2-1 [56.7 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri2-0 amd64 1.11.1-1.1 [12.9 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri3-0 amd64 1.11.1-1.1 [11.2 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-glx0 amd64 1.11.1-1.1 [27.0 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-present0 amd64 1.11.1-1.1 [11.2 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-randr0 amd64 1.11.1-1.1 [20.6 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.11.1-1.1 [17.5 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shape0 amd64 1.11.1-1.1 [11.7 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-sync1 amd64 1.11.1-1.1 [14.4 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-xfixes0 amd64 1.11.1-1.1 [14.8 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libgl1-mesa-glx amd64 11.2.2-1 [162 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libxi6 amd64 2:1.7.6-1 [80.6 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 freeglut3 amd64 2.8.1-3 [123 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 7.0.29-1 [728 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [42.0 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-input-dev all 2.3.2-1 [158 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-kb-dev all 1.0.7-1 [233 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.11.1-1.1 [79.9 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.3-1 [813 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1 [49.8 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-intel1 amd64 2.4.70-1 [64.6 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.70-1 [30.1 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.70-1 [24.9 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.70-1 [24.9 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-dev amd64 2.4.70-1 [219 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 mesa-common-dev amd64 11.2.2-1 [491 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libx11-xcb-dev amd64 2:1.6.3-1 [178 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri3-dev amd64 1.11.1-1.1 [11.7 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0-dev amd64 1.11.1-1.1 [21.2 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-randr0-dev amd64 1.11.1-1.1 [24.1 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shape0-dev amd64 1.11.1-1.1 [12.9 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-xfixes0-dev amd64 1.11.1-1.1 [17.2 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-sync-dev amd64 1.11.1-1.1 [16.1 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-present-dev amd64 1.11.1-1.1 [12.6 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 libxshmfence-dev amd64 1.2-1 [7242 B] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri2-0-dev amd64 1.11.1-1.1 [14.4 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-glx0-dev amd64 1.11.1-1.1 [32.8 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-fixes-dev all 1:5.0-2 [19.2 kB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 libxfixes-dev amd64 1:5.0.2-1 [23.1 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-damage-dev all 1:1.2.1-2 [11.8 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 libxdamage-dev amd64 1:1.1.4-2+b1 [14.4 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 libxext-dev amd64 2:1.3.3-1 [107 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-xf86vidmode-dev all 2.3.1-2 [6114 B] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libxxf86vm-dev amd64 1:1.1.4-1 [25.4 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-dri2-dev all 2.8-2 [18.2 kB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-gl-dev all 1.4.17-1 [28.0 kB] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 libgl1-mesa-dev amd64 11.2.2-1 [39.3 kB] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1 [202 kB] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 libice-dev amd64 2:1.0.9-1+b1 [66.3 kB] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 libsm-dev amd64 2:1.2.2-1+b1 [35.8 kB] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 libxt-dev amd64 1:1.1.5-1 [423 kB] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 freeglut3-dev amd64 2.8.1-3 [177 kB] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-3 [172 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common-data amd64 0.6.32-1 [118 kB] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common3 amd64 0.6.32-1 [52.1 kB] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 libdbus-1-3 amd64 1.10.10-1 [190 kB] Get:161 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-client3 amd64 0.6.32-1 [55.4 kB] Get:162 http://127.0.0.1:9999/debian unstable/main amd64 libblas-common amd64 3.6.1-2 [13.9 kB] Get:163 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.2.0-1 [264 kB] Get:164 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.6.1-2 [157 kB] Get:165 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.33.6-1 [532 kB] Get:166 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.11.1-1.1 [11.6 kB] Get:167 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.14.6-1+b1 [767 kB] Get:168 http://127.0.0.1:9999/debian unstable/main amd64 libcups2 amd64 2.1.4-4 [299 kB] Get:169 http://127.0.0.1:9999/debian unstable/main amd64 libcupsimage2 amd64 2.1.4-4 [120 kB] Get:170 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.0-1 [132 kB] Get:171 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.6-2 [222 kB] Get:172 http://127.0.0.1:9999/debian unstable/main amd64 libcupsfilters1 amd64 1.10.0-1 [126 kB] Get:173 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.0-1 [128 kB] Get:174 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:175 http://127.0.0.1:9999/debian unstable/main amd64 libpng-dev amd64 1.6.24-2 [247 kB] Get:176 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6-dev amd64 2.6.3-3+b1 [5812 kB] Get:177 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4 [62.5 kB] Get:178 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1-dev amd64 2.11.0-6.7 [894 kB] Get:179 http://127.0.0.1:9999/debian unstable/main amd64 libglew1.13 amd64 1.13.0-2 [122 kB] Get:180 http://127.0.0.1:9999/debian unstable/main amd64 libglew-dev amd64 1.13.0-2 [123 kB] Get:181 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.8-1 [76.4 kB] Get:182 http://127.0.0.1:9999/debian unstable/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:183 http://127.0.0.1:9999/debian unstable/main amd64 libjbig2dec0 amd64 0.13-3 [59.8 kB] Get:184 http://127.0.0.1:9999/debian unstable/main amd64 liblcms2-2 amd64 2.7-1 [140 kB] Get:185 http://127.0.0.1:9999/debian unstable/main amd64 libopenjp2-7 amd64 2.1.1-1 [120 kB] Get:186 http://127.0.0.1:9999/debian unstable/main amd64 libgs9-common all 9.19~dfsg-2 [3030 kB] Get:187 http://127.0.0.1:9999/debian unstable/main amd64 libgs9 amd64 9.19~dfsg-2 [2067 kB] Get:188 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.2.7-1+b1 [612 kB] Get:189 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz-icu0 amd64 1.2.7-1+b1 [439 kB] Get:190 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-3 [16.3 MB] Get:191 http://127.0.0.1:9999/debian unstable/main amd64 libkpathsea6 amd64 2016.20160513.41080-6 [159 kB] Get:192 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.6.1-2 [1963 kB] Get:193 http://127.0.0.1:9999/debian unstable/main amd64 libnspr4 amd64 2:4.12-6 [117 kB] Get:194 http://127.0.0.1:9999/debian unstable/main amd64 libnss3 amd64 2:3.26-1 [1158 kB] Get:195 http://127.0.0.1:9999/debian unstable/main amd64 libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:196 http://127.0.0.1:9999/debian unstable/main amd64 libpoppler61 amd64 0.44.0-3 [1267 kB] Get:197 http://127.0.0.1:9999/debian unstable/main amd64 libpotrace0 amd64 1.13-2 [25.3 kB] Get:198 http://127.0.0.1:9999/debian unstable/main amd64 libptexenc1 amd64 2016.20160513.41080-6 [57.3 kB] Get:199 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.12-2 [1070 kB] Get:200 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.12-2 [28.1 MB] Get:201 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.11-2 [19.8 kB] Get:202 http://127.0.0.1:9999/debian unstable/main amd64 libsynctex1 amd64 2016.20160513.41080-6 [64.2 kB] Get:203 http://127.0.0.1:9999/debian unstable/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1 [984 kB] Get:204 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua52 amd64 2016.20160513.41080-6 [110 kB] Get:205 http://127.0.0.1:9999/debian unstable/main amd64 libtexluajit2 amd64 2016.20160513.41080-6 [249 kB] Get:206 http://127.0.0.1:9999/debian unstable/main amd64 libtk8.6 amd64 8.6.6-1 [752 kB] Get:207 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:208 http://127.0.0.1:9999/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1 [200 kB] Get:209 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:210 http://127.0.0.1:9999/debian unstable/main amd64 libxrender-dev amd64 1:0.9.9-2 [39.3 kB] Get:211 http://127.0.0.1:9999/debian unstable/main amd64 libxft-dev amd64 2.3.2-1 [66.6 kB] Get:212 http://127.0.0.1:9999/debian unstable/main amd64 libxml2-dev amd64 2.9.4+dfsg1-1+b1 [812 kB] Get:213 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:214 http://127.0.0.1:9999/debian unstable/main amd64 libxss-dev amd64 1:1.2.2-1 [22.8 kB] Get:215 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.12-2 [281 kB] Get:216 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.11-2 [1128 B] Get:217 http://127.0.0.1:9999/debian unstable/main amd64 python-numpy amd64 1:1.11.1~rc1-1 [1771 kB] Get:218 http://127.0.0.1:9999/debian unstable/main amd64 t1utils amd64 1.39-2 [59.0 kB] Get:219 http://127.0.0.1:9999/debian unstable/main amd64 tcl8.6 amd64 8.6.6+dfsg-1 [123 kB] Get:220 http://127.0.0.1:9999/debian unstable/main amd64 tcl amd64 8.6.0+9 [5468 B] Get:221 http://127.0.0.1:9999/debian unstable/main amd64 tcl8.6-dev amd64 8.6.6+dfsg-1 [991 kB] Get:222 http://127.0.0.1:9999/debian unstable/main amd64 tcl-dev amd64 8.6.0+9 [7920 B] Get:223 http://127.0.0.1:9999/debian unstable/main amd64 tex-common all 6.05 [564 kB] Get:224 http://127.0.0.1:9999/debian unstable/main amd64 xdg-utils all 1.1.1-1 [71.1 kB] Get:225 http://127.0.0.1:9999/debian unstable/main amd64 texlive-binaries amd64 2016.20160513.41080-6 [6537 kB] Get:226 http://127.0.0.1:9999/debian unstable/main amd64 texlive-base all 2016.20160819-2 [15.6 MB] Get:227 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-base all 2016.20160819-2 [860 kB] Get:228 http://127.0.0.1:9999/debian unstable/main amd64 tk8.6 amd64 8.6.6-1 [71.4 kB] Get:229 http://127.0.0.1:9999/debian unstable/main amd64 tk amd64 8.6.0+9 [5506 B] Get:230 http://127.0.0.1:9999/debian unstable/main amd64 tk8.6-dev amd64 8.6.6-1 [740 kB] Get:231 http://127.0.0.1:9999/debian unstable/main amd64 tk-dev amd64 8.6.0+9 [5298 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 144 MB in 1s (84.9 MB/s) Selecting previously unselected package groff-base. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_amd64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.10_amd64.deb ... Unpacking bsdmainutils (9.0.10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.12-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.12-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.12-2_amd64.deb ... Unpacking python2.7-minimal (2.7.12-2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../06-python-minimal_2.7.11-2_amd64.deb ... Unpacking python-minimal (2.7.11-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../07-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../08-libexpat1_2.2.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../09-readline-common_6.3-8_all.deb ... Unpacking readline-common (6.3-8) ... Selecting previously unselected package libreadline6:amd64. Preparing to unpack .../10-libreadline6_6.3-8+b4_amd64.deb ... Unpacking libreadline6:amd64 (6.3-8+b4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../11-libsqlite3-0_3.14.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.14.1-1) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../12-libssl1.0.2_1.0.2h-1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2h-1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../13-libpython2.7-stdlib_2.7.12-2_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.12-2) ... Selecting previously unselected package python2.7. Preparing to unpack .../14-python2.7_2.7.12-2_amd64.deb ... Unpacking python2.7 (2.7.12-2) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../15-libpython-stdlib_2.7.11-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.11-2) ... Setting up libpython2.7-minimal:amd64 (2.7.12-2) ... Setting up python2.7-minimal (2.7.12-2) ... Setting up python-minimal (2.7.11-2) ... Selecting previously unselected package python. (Reading database ... 11156 files and directories currently installed.) Preparing to unpack .../00-python_2.7.11-2_amd64.deb ... Unpacking python (2.7.11-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../01-lsb-base_9.20160629_all.deb ... Unpacking lsb-base (9.20160629) ... Selecting previously unselected package x11-common. Preparing to unpack .../02-x11-common_1%3a7.7+16_all.deb ... Unpacking x11-common (1:7.7+16) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../03-libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package ucf. Preparing to unpack .../04-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../05-libpaper1_1.1.24+nmu4_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../06-libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../07-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../08-libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../09-libxcb1_1.11.1-1.1_amd64.deb ... Unpacking libxcb1:amd64 (1.11.1-1.1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../10-libx11-data_2%3a1.6.3-1_all.deb ... Unpacking libx11-data (2:1.6.3-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../11-libx11-6_2%3a1.6.3-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.3-1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../12-libx11-xcb1_2%3a1.6.3-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.3-1) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../13-libxfixes3_1%3a5.0.2-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.2-1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../14-libxdamage1_1%3a1.1.4-2+b1_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../15-libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../16-libpng16-16_1.6.24-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.24-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../17-libfreetype6_2.6.3-3+b1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3+b1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../18-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../19-fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../20-libfontconfig1_2.11.0-6.7_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../21-libxrender1_1%3a0.9.9-2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.9-2) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../22-libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../23-libxpm4_1%3a3.5.11-1+b1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.11-1+b1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../24-libxshmfence1_1.2-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.2-1) ... 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Setting up libkpathsea6:amd64 (2016.20160513.41080-6) ... Setting up libtexlua52:amd64 (2016.20160513.41080-6) ... Setting up readline-common (6.3-8) ... Setting up x11proto-dri2-dev (2.8-2) ... Setting up libnettle6:amd64 (3.2-1) ... Setting up libsynctex1:amd64 (2016.20160513.41080-6) ... Setting up libopenjp2-7:amd64 (2.1.1-1) ... Setting up libptexenc1:amd64 (2016.20160513.41080-6) ... Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.24-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:amd64 (2.7-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.7-7) ... Setting up libblas-common (3.6.1-2) ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Aug 29 17:03:46 UTC 2016. Universal Time is now: Mon Aug 29 17:03:46 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgfortran3:amd64 (6.2.0-1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.48.1-3) ... No schema files found: doing nothing. Setting up libxshmfence1:amd64 (1.2-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up x11proto-xf86vidmode-dev (2.3.1-2) ... Setting up libtiff5:amd64 (4.0.6-2) ... Setting up gettext-base (0.19.8.1-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up libglapi-mesa:amd64 (11.2.2-1) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:amd64 (57.1-3) ... Setting up libnspr4:amd64 (2:4.12-6) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1+b1) ... Setting up libfreetype6:amd64 (2.6.3-3+b1) ... Setting up libtasn1-6:amd64 (4.9-4) ... Setting up libmagic-mgc (1:5.28-4) ... Setting up libdrm2:amd64 (2.4.70-1) ... Setting up libmagic1:amd64 (1:5.28-4) ... Setting up libhogweed4:amd64 (3.2-1) ... Setting up lsb-base (9.20160629) ... Setting up libgraphite2-3:amd64 (1.3.8-1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up pkg-config (0.29-4) ... Setting up libjbig2dec0:amd64 (0.13-3) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libblas3 (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.23-5) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up t1utils (1.39-2) ... Setting up libp11-kit0:amd64 (0.23.2-5) ... Setting up x11proto-gl-dev (1.4.17-1) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libsqlite3-0:amd64 (3.14.1-1) ... Setting up libexpat1-dev:amd64 (2.2.0-1) ... Setting up libpciaccess0:amd64 (0.13.4-1) ... Setting up libpotrace0 (1.13-2) ... Setting up icu-devtools (57.1-3) ... Setting up libdrm-radeon1:amd64 (2.4.70-1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libdrm-nouveau2:amd64 (2.4.70-1) ... Setting up bsdmainutils (9.0.10) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+16) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up xdg-utils (1.1.1-1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080-6) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1) ... Setting up libidn11:amd64 (1.33-1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libdbus-1-3:amd64 (1.10.10-1) ... Setting up libreadline6:amd64 (6.3-8+b4) ... Setting up libavahi-common-data:amd64 (0.6.32-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up tex-common (6.05) ... update-language: texlive-base not installed and configured, doing nothing! Setting up x11proto-core-dev (7.0.29-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.70-1) ... Setting up libxshmfence-dev:amd64 (1.2-1) ... Setting up gettext (0.19.8.1-1) ... Setting up liblapack3 (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.2-3) ... Setting up libgnutls30:amd64 (3.5.3-3) ... Setting up libnss3:amd64 (2:3.26-1) ... Setting up libharfbuzz0b:amd64 (1.2.7-1+b1) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-3) ... Setting up file (1:5.28-4) ... Setting up libkrb5support0:amd64 (1.14.3+dfsg-1) ... Setting up libxml2-dev:amd64 (2.9.4+dfsg1-1+b1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:amd64 (2.4.70-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-1.1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2+b2) ... Setting up tcl8.6 (8.6.6+dfsg-1) ... Setting up automake (1:1.15-4) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libavahi-common3:amd64 (0.6.32-1) ... Setting up libpng-dev:amd64 (1.6.24-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxcb1:amd64 (1.11.1-1.1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-2) ... Setting up tcl8.6-dev:amd64 (8.6.6+dfsg-1) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.2-3) ... Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up libxcb-present0:amd64 (1.11.1-1.1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7) ... Setting up libxcb-dri2-0:amd64 (1.11.1-1.1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxcb-dri3-0:amd64 (1.11.1-1.1) ... Setting up libk5crypto3:amd64 (1.14.3+dfsg-1) ... Setting up libxcb-glx0:amd64 (1.11.1-1.1) ... Setting up libxcb-randr0:amd64 (1.11.1-1.1) ... Setting up libxcb-xfixes0:amd64 (1.11.1-1.1) ... Setting up libxcb-render0:amd64 (1.11.1-1.1) ... Setting up libharfbuzz-icu0:amd64 (1.2.7-1+b1) ... Setting up po-debconf (1.0.19) ... Setting up libdrm-dev:amd64 (2.4.70-1) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up tcl (8.6.0+9) ... Setting up python2.7 (2.7.12-2) ... Setting up libxcb-sync1:amd64 (1.11.1-1.1) ... Setting up libpython-stdlib:amd64 (2.7.11-2) ... Setting up libx11-xcb1:amd64 (2:1.6.3-1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up libfreetype6-dev (2.6.3-3+b1) ... Setting up libice-dev:amd64 (2:1.0.9-1+b1) ... Setting up libpython2.7:amd64 (2.7.12-2) ... Setting up libxcb-shm0:amd64 (1.11.1-1.1) ... Setting up libxpm4:amd64 (1:3.5.11-1+b1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.11.1-1.1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libxcb1-dev:amd64 (1.11.1-1.1) ... Setting up libxcb-glx0-dev:amd64 (1.11.1-1.1) ... Setting up libavahi-client3:amd64 (0.6.32-1) ... Setting up libkrb5-3:amd64 (1.14.3+dfsg-1) ... Setting up libpython2.7-dev:amd64 (2.7.12-2) ... Setting up libpoppler61:amd64 (0.44.0-3) ... Setting up libx11-dev:amd64 (2:1.6.3-1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up python2.7-dev (2.7.12-2) ... Setting up tcl-dev:amd64 (8.6.0+9) ... Setting up python (2.7.11-2) ... Setting up libxcb-sync-dev:amd64 (1.11.1-1.1) ... Setting up libfontconfig1-dev:amd64 (2.11.0-6.7) ... Setting up libx11-xcb-dev:amd64 (2:1.6.3-1) ... Setting up libpython-dev:amd64 (2.7.11-2) ... Setting up libsm-dev:amd64 (2:1.2.2-1+b1) ... Setting up mesa-common-dev:amd64 (11.2.2-1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxfixes3:amd64 (1:5.0.2-1) ... Setting up python-dev (2.7.11-2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up x11proto-fixes-dev (1:5.0-2) ... Setting up libxrender-dev:amd64 (1:0.9.9-2) ... Setting up python-numpy (1:1.11.1~rc1-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ... Setting up libxcb-dri2-0-dev:amd64 (1.11.1-1.1) ... Setting up libxcb-render0-dev:amd64 (1.11.1-1.1) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxft-dev (2.3.2-1) ... Setting up libxcb-dri3-dev:amd64 (1.11.1-1.1) ... Setting up libxext-dev:amd64 (2:1.3.3-1) ... Setting up libxcb-shape0-dev:amd64 (1.11.1-1.1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1) ... Setting up libxxf86vm-dev:amd64 (1:1.1.4-1) ... Setting up libxfixes-dev:amd64 (1:5.0.2-1) ... Setting up libcups2:amd64 (2.1.4-4) ... Setting up libxi6:amd64 (2:1.7.6-1) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up libcairo2:amd64 (1.14.6-1+b1) ... Setting up libxcb-randr0-dev:amd64 (1.11.1-1.1) ... Setting up libxt-dev:amd64 (1:1.1.5-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxcb-xfixes0-dev:amd64 (1.11.1-1.1) ... Setting up libtk8.6:amd64 (8.6.6-1) ... Setting up libxdamage-dev:amd64 (1:1.1.4-2+b1) ... Setting up libxss-dev:amd64 (1:1.2.2-1) ... Setting up libgl1-mesa-glx:amd64 (11.2.2-1) ... Setting up libglew1.13:amd64 (1.13.0-2) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up libxcb-present-dev:amd64 (1.11.1-1.1) ... Setting up freeglut3:amd64 (2.8.1-3) ... Setting up tk8.6 (8.6.6-1) ... Setting up tk8.6-dev:amd64 (8.6.6-1) ... Setting up libgl1-mesa-dev:amd64 (11.2.2-1) ... Setting up tk (8.6.0+9) ... Setting up libglu1-mesa-dev:amd64 (9.0.0-2.1) ... Setting up tk-dev:amd64 (8.6.0+9) ... Setting up libglew-dev:amd64 (1.13.0-2) ... Setting up freeglut3-dev:amd64 (2.8.1-3) ... Setting up python3 (3.5.1-4) ... Setting up libcupsfilters1:amd64 (1.10.0-1) ... Setting up libcupsimage2:amd64 (2.1.4-4) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up libgs9 (9.19~dfsg-2) ... Setting up dh-python (2.20160818) ... Setting up dh-autoreconf (12) ... Setting up texlive-binaries (2016.20160513.41080-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up debhelper (9.20160814) ... Processing triggers for tex-common (6.05) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil --all call Setting up texlive-base (2016.20160819-2) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-base (2016.20160819-2) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up sbuild-build-depends-pymol-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... 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libxcb-shape0-dev_1.11.1-1.1 libxcb-shm0_1.11.1-1.1 libxcb-sync-dev_1.11.1-1.1 libxcb-sync1_1.11.1-1.1 libxcb-xfixes0_1.11.1-1.1 libxcb-xfixes0-dev_1.11.1-1.1 libxcb1_1.11.1-1.1 libxcb1-dev_1.11.1-1.1 libxdamage-dev_1:1.1.4-2+b1 libxdamage1_1:1.1.4-2+b1 libxdmcp-dev_1:1.1.2-1.1 libxdmcp6_1:1.1.2-1.1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.2-1 libxfixes3_1:5.0.2-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.6-1 libxml2_2.9.4+dfsg1-1+b1 libxml2-dev_2.9.4+dfsg1-1+b1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1+b1 libxrender-dev_1:0.9.9-2 libxrender1_1:0.9.9-2 libxshmfence-dev_1.2-1 libxshmfence1_1.2-1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 lsb-base_9.20160629 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mesa-common-dev_11.2.2-1 mime-support_3.60 mount_2.28.1-1 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-config_0.29-4 po-debconf_1.0.19 poppler-data_0.4.7-7 python_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python-numpy_1:1.11.1~rc1-1 python2.7_2.7.12-2 python2.7-dev_2.7.12-2 python2.7-minimal_2.7.12-2 python3_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-3 python3.5-minimal_3.5.2-3 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pymol-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 t1utils_1.39-2 tar_1.29b-1 tcl_8.6.0+9 tcl-dev_8.6.0+9 tcl8.6_8.6.6+dfsg-1 tcl8.6-dev_8.6.6+dfsg-1 tex-common_6.05 texlive-base_2016.20160819-2 texlive-binaries_2016.20160513.41080-6 texlive-latex-base_2016.20160819-2 tk_8.6.0+9 tk-dev_8.6.0+9 tk8.6_8.6.6-1 tk8.6-dev_8.6.6-1 tzdata_2016f-1 ucf_3.0036 util-linux_2.28.1-1 x11-common_1:7.7+16 x11proto-core-dev_7.0.29-1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xdg-utils_1.1.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 22 08:43:27 2016 UTC using RSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pymol_1.8.2.1+dfsg-1.dsc dpkg-source: info: extracting pymol in /<>/pymol-1.8.2.1+dfsg dpkg-source: info: unpacking pymol_1.8.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_1.8.2.1+dfsg-1.debian.tar.xz dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 29_fix_path_to_splash.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-ad00cac5-214a-4762-b130-181f9a4c555c SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 1.8.2.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Tatiana Malygina dpkg-source --before-build pymol-1.8.2.1+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --parallel dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/pymol-1.8.2.1+dfsg' [ ! -f Makefile ] || /usr/bin/make distclean dh_auto_clean -Spython_distutils python setup.py clean -a running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>/pymol-1.8.2.1+dfsg' debian/rules override_dh_clean make[1]: Entering directory '/<>/pymol-1.8.2.1+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/<>/pymol-1.8.2.1+dfsg' debian/rules build-arch dh build-arch --with python2 --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/pymol-1.8.2.1+dfsg' dh_auto_configure -Spython_distutils make[1]: Leaving directory '/<>/pymol-1.8.2.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/pymol-1.8.2.1+dfsg' dh_auto_build -Spython_distutils python setup.py build --force running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/web copying modules/web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/web copying modules/web/__init__.py -> build/lib.linux-x86_64-2.7/web copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 creating build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/__init__.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/morphing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-x86_64-2.7/layer0/Block.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Raw.cpp -o build/temp.linux-x86_64-2.7/layer0/Raw.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-x86_64-2.7/layer0/Field.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-x86_64-2.7/layer0/Matrix.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-x86_64-2.7/layer0/File.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-x86_64-2.7/layer0/Sphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-x86_64-2.7/layer0/Util.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-x86_64-2.7/layer0/Err.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-x86_64-2.7/layer0/Deferred.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-x86_64-2.7/layer0/Tracker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-x86_64-2.7/layer0/Map.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-x86_64-2.7/layer0/Vector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-x86_64-2.7/layer0/Parse.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-x86_64-2.7/layer0/Triangle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-x86_64-2.7/layer0/Word.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-x86_64-2.7/layer1/Control.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-x86_64-2.7/layer0/Match.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-x86_64-2.7/layer0/Debug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-x86_64-2.7/layer0/Texture.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-x86_64-2.7/layer1/Wizard.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-x86_64-2.7/layer0/Crystal.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-x86_64-2.7/layer1/Setting.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-x86_64-2.7/layer0/Feedback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-x86_64-2.7/layer0/Util2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-x86_64-2.7/layer1/Font.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-x86_64-2.7/layer1/View.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-x86_64-2.7/layer0/Queue.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-x86_64-2.7/layer0/os_gl.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-x86_64-2.7/layer1/COLLADA.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-x86_64-2.7/layer1/Pop.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-x86_64-2.7/layer1/ButMode.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-x86_64-2.7/layer1/Rep.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-x86_64-2.7/layer1/Color.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-x86_64-2.7/layer1/Extrude.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-x86_64-2.7/layer1/P.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-x86_64-2.7/layer1/CGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-2.7/layer2/SideChainHelper.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-x86_64-2.7/layer1/Ray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-x86_64-2.7/layer2/VFont.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfoHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-x86_64-2.7/layer1/Seq.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-x86_64-2.7/layer1/FontType.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-x86_64-2.7/layer1/Movie.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-x86_64-2.7/layer1/Scene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-x86_64-2.7/layer1/PConv.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-x86_64-2.7/layer1/Ortho.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-x86_64-2.7/layer1/Text.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDot.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-x86_64-2.7/layer2/DistSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-2.7/layer2/BondTypeHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-x86_64-2.7/layer1/Basis.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-x86_64-2.7/layer1/Character.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-x86_64-2.7/layer1/Shaker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-x86_64-2.7/layer3/MovieScene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-x86_64-2.7/layer3/Editor.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-x86_64-2.7/layer4/Export.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-x86_64-2.7/layer4/PopUp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-x86_64-2.7/layer4/Menu.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-x86_64-2.7/layer4/Cmd.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-x86_64-2.7/layer2/CifFile.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-x86_64-2.7/layer5/main.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp:931:30: warning: '&&' within '||' [-Wlogical-op-parentheses] } else if(G->HaveGUI && G->ValidContext || returnCGO) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ~~ layer2/ObjectMesh.cpp:931:30: note: place parentheses around the '&&' expression to silence this warning } else if(G->HaveGUI && G->ValidContext || returnCGO) { ^ ( ) 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:8: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:8: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-2.7/layer2/Mol2Typing.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:44: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:60: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 8 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(title, 82, fd); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 82, fd); ^~~~~ ~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:27: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:32: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:44: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:27: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 11 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:44: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:60: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 5 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] fio_size_t bszmask; ^ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:2: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ 21 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-x86_64-2.7/layer3/Executive.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ 7 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:2: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(buf, n, mf->f); ^~~~~ ~~~~~~~~~~~~~ 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-x86_64-2.7/layer3/Selector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 9 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:166:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:185:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:178:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:243:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:225:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:299:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:280:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:359:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:321:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:270:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 13, edm->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(line3, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ 34 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:78:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:86:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:96:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:202:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:254:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:272:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:286:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " %d", &cur); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:407:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(sdum, sizeof(sdum), file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:365:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(sdum, 512, file); ^~~~~ ~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:379:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:419:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file,parm7, ^~~~~~ ~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:423:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, parm7, ^~~~~~ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:431:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:76:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, "%s\n", buf); // format ^~~~~~ ~~~~~~~~~~~~~~~~~ 15 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ 11 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:234:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:467:17: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:439:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:441:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:443:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:445:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:447:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:504:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:405:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:183:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(symData, 81, fd); ^~~~~ ~~~~~~~~~~~~~~~ 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:141:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:356:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(cube->fd, "%d", &orb); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:351:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fgets(readbuf, 256, cube->fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~ c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 4 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, "%3s", keyWord); ^~~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:4: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-x86_64-2.7/layer3/Seeker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 17 warnings generated. c++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-oH9M6v/python2.7-2.7.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Util2.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer0/Raw.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/File.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/COLLADA.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/SideChainHelper.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/AtomInfoHistory.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/BondTypeHistory.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/CifFile.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/Mol2Typing.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/MovieScene.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -o build/lib.linux-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o contrib/champ/champ.c:2787:3: error: unterminated function-like macro invocation PRINTFD(FB_smiles_parsing) ^ contrib/champ/feedback2.h:122:61: note: expanded from macro 'PRINTFD' #define PRINTFD(sysmod) {if(feedback_(sysmod,FB_debugging)) fprintf(stderr, ^ /usr/include/x86_64-linux-gnu/bits/stdio2.h:109:11: note: macro 'fprintf' defined here # define fprintf(stream, ...) \ ^ contrib/champ/champ.c:5204:2: error: expected expression } ^ contrib/champ/champ.c:5204:2: error: expected '}' contrib/champ/champ.c:2787:3: note: to match this '{' PRINTFD(FB_smiles_parsing) ^ contrib/champ/feedback2.h:122:25: note: expanded from macro 'PRINTFD' #define PRINTFD(sysmod) {if(feedback_(sysmod,FB_debugging)) fprintf(stderr, ^ contrib/champ/champ.c:5204:2: error: expected '}' } ^ contrib/champ/champ.c:2776:1: note: to match this '{' { ^ 4 errors generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 dh_auto_build: python setup.py build --force returned exit code 1 debian/rules:20: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 1 make[1]: Leaving directory '/<>/pymol-1.8.2.1+dfsg' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T17:06:12Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 134 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 43 Job: pymol_1.8.2.1+dfsg-1 Machine Architecture: amd64 Package: pymol Package-Time: 205 Source-Version: 1.8.2.1+dfsg-1 Space: 0 Status: failed Version: 1.8.2.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2016-08-29T17:06:12Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 205.50811917s