DC-Build-Header: bagel 0.0~git20170109-1 / 2017-07-06 16:11:31 +0000 DC-Task: type:rebuild-binarch-only source:bagel version:0.0~git20170109-1 chroot:unstable esttime:6679 logfile:/tmp/bagel_0.0~git20170109-1_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang bagel_0.0~git20170109-1' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-44-121.eu-central-1.compute.internal +==============================================================================+ | bagel 0.0~git20170109-1 (amd64) Thu, 06 Jul 2017 16:11:31 +0000 | +==============================================================================+ Package: bagel Version: 0.0~git20170109-1 Source Version: 0.0~git20170109-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3647fa1f-e757-4e08-8cd8-83fac26b1a04' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3917 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.9-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 251 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.9 amd64 1:3.9.1-10 [11.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.9 amd64 1:3.9.1-10 [5875 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.9-dev amd64 1:3.9.1-10 [2573 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.9 amd64 1:3.9.1-10 [37.4 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 0s (96.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9711 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.5-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../1-libncurses5_6.0+20161126-1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../3-libllvm3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libclang1-3.9:amd64. Preparing to unpack .../4-libclang1-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libclang1-3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-3.9-dev. Preparing to unpack .../8-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../9-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/bagel-bJzX5H + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'bagel' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debichem/unstable/bagel/ Need to get 32.6 MB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main bagel 0.0~git20170109-1 (dsc) [2189 B] Get:2 http://127.0.0.1:9999/debian unstable/main bagel 0.0~git20170109-1 (tar) [32.6 MB] Get:3 http://127.0.0.1:9999/debian unstable/main bagel 0.0~git20170109-1 (diff) [6080 B] Fetched 32.6 MB in 0s (66.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/bagel-bJzX5H/bagel-0.0~git20170109' with '<>' I: NOTICE: Log filtering will replace 'build/bagel-bJzX5H' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-qpKWSK/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-qpKWSK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-qpKWSK/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-qpKWSK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-qpKWSK/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-qpKWSK/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-qpKWSK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, libblas-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, liblapack-dev, libmpich-dev, libxc-dev, python-dev Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, libblas-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, liblapack-dev, libmpich-dev, libxc-dev, python-dev dpkg-deb: building package 'sbuild-build-depends-bagel-dummy' in '/<>/resolver-qpKWSK/apt_archive/sbuild-build-depends-bagel-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bagel-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-qpKWSK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-qpKWSK/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-qpKWSK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-qpKWSK/apt_archive ./ Sources [551 B] Get:5 copy:/<>/resolver-qpKWSK/apt_archive ./ Packages [634 B] Fetched 2148 B in 0s (0 B/s) Reading package lists... Reading package lists... Install bagel build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-chrono1.62.0 libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization-dev libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system1.62.0 libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost-timer1.62.0 libboost1.62-dev libcr-dev libcr0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libicu-dev libicu57 liblapack-dev liblapack3 libmagic-mgc libmagic1 libmpdec2 libmpich-dev libmpich12 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxc-dev libxc4 libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc libboost1.62-doc gccxml libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-random1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev blcr-dkms icu-doc libtool-doc gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc readline-doc Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs mpich libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-chrono1.62.0 libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization-dev libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system1.62.0 libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost-timer1.62.0 libboost1.62-dev libcr-dev libcr0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libicu-dev libicu57 liblapack-dev liblapack3 libmagic-mgc libmagic1 libmpdec2 libmpich-dev libmpich12 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxc-dev libxc4 libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common sbuild-build-depends-bagel-dummy 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After this operation, 509 MB of additional disk space will be used. Get:1 copy:/<>/resolver-qpKWSK/apt_archive ./ sbuild-build-depends-bagel-dummy 0.invalid.0 [850 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.13-2 [389 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.13-2 [1383 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.16.2-5 [572 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-3 [1342 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.13-2 [1895 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.13-2 [285 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.3-3 [577 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.3-3 [1695 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.3-3 [35.4 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.3-3 [2170 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.3-3 [237 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.3-3 [18.8 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20170125 [86.8 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.3-3 [21.8 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-1 [265 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran-6-dev amd64 6.4.0-1 [299 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 gfortran-6 amd64 6.4.0-1 [6911 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 gfortran amd64 4:6.3.0-4d1 [1362 B] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-6 [178 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libblas-common amd64 3.7.1-1 [14.6 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.7.1-1 [156 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libblas-dev amd64 3.7.1-1 [162 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4+b1 [32.7 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-4+b1 [36.3 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.62.0 amd64 1.62.0+dfsg-4+b1 [138 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.13-2 [1072 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.1-3 [137 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.13-2 [28.2 MB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.13-2 [20.1 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.13-2 [281 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.13-2 [1126 B] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5 amd64 3.5.3-3 [1373 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-dev amd64 3.5.3-3 [37.8 MB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-dev amd64 3.5.3-3 [18.9 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-dev amd64 3.5.3-3 [413 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 python3-dev amd64 3.5.3-3 [1154 B] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.62-dev amd64 1.62.0+dfsg-4+b1 [166 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python-dev amd64 1.62.0.1 [3802 B] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4+b1 [288 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-6 [16.5 MB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62-dev amd64 1.62.0+dfsg-4+b1 [335 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex-dev amd64 1.62.0.1 [3674 B] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4+b1 [126 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62-dev amd64 1.62.0+dfsg-4+b1 [163 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization-dev amd64 1.62.0.1 [3642 B] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.62.0 amd64 1.62.0+dfsg-4+b1 [34.8 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.62.0 amd64 1.62.0+dfsg-4+b1 [255 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.62-dev amd64 1.62.0+dfsg-4+b1 [301 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test-dev amd64 1.62.0.1 [3456 B] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libcr0 amd64 0.8.5-2.3+b1 [33.2 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libcr-dev amd64 0.8.5-2.3+b1 [40.4 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.7.1-1 [2141 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 liblapack-dev amd64 3.7.1-1 [2173 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libmpich12 amd64 3.2-7+b1 [901 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libmpich-dev amd64 3.2-7+b1 [1267 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libxc4 amd64 3.0.0-1 [367 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libxc-dev amd64 3.0.0-1 [432 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 141 MB in 1s (86.9 MB/s) Selecting previously unselected package groff-base. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.13-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.13-2_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2) ... 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Unpacking python (2.7.13-2) ... Selecting previously unselected package libpython3.5-minimal:amd64. Preparing to unpack .../1-libpython3.5-minimal_3.5.3-3_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.3-3) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../2-python3.5-minimal_3.5.3-3_amd64.deb ... Unpacking python3.5-minimal (3.5.3-3) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.5.3-3_amd64.deb ... Unpacking python3-minimal (3.5.3-3) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../4-libmpdec2_2.4.2-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-1) ... Selecting previously unselected package libpython3.5-stdlib:amd64. Preparing to unpack .../5-libpython3.5-stdlib_3.5.3-3_amd64.deb ... Unpacking libpython3.5-stdlib:amd64 (3.5.3-3) ... Selecting previously unselected package python3.5. Preparing to unpack .../6-python3.5_3.5.3-3_amd64.deb ... 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Setting up readline-common (7.0-3) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libcr0 (0.8.5-2.3+b1) ... Setting up mime-support (3.60) ... Setting up libboost1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.1-1) ... Setting up libgfortran3:amd64 (6.4.0-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.52.3-1) ... No schema files found: doing nothing. Setting up libgfortran-6-dev:amd64 (6.4.0-1) ... Setting up gettext-base (0.19.8.1-2+b1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up libboost-serialization1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:amd64 (1:5.30-1) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libblas3 (3.7.1-1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-12) ... Setting up autotools-dev (20161112.1) ... Setting up libsqlite3-0:amd64 (3.16.2-5) ... Setting up libexpat1-dev:amd64 (2.2.1-3) ... Setting up libboost-python1.62.0 (1.62.0+dfsg-4+b1) ... Setting up icu-devtools (57.1-6) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxc4:amd64 (3.0.0-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2) ... Setting up autopoint (0.19.8.1-2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libcr-dev (0.8.5-2.3+b1) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libboost-serialization-dev:amd64 (1.62.0.1) ... Setting up gfortran-6 (6.4.0-1) ... Setting up libmpich12:amd64 (3.2-7+b1) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libxc-dev (3.0.0-1) ... Setting up liblapack3 (3.7.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.3-3) ... Setting up libboost-regex1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up python2.7 (2.7.13-2) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-6) ... Setting up file (1:5.30-1) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:amd64 (2.7.13-2) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:amd64 (2.7.13-2) ... Setting up python2.7-dev (2.7.13-2) ... Setting up python (2.7.13-2) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.3-3) ... Setting up gfortran (4:6.3.0-4d1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3-stdlib:amd64 (3.5.3-3) ... Setting up libpython-dev:amd64 (2.7.13-2) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up po-debconf (1.0.20) ... Setting up libblas-dev (3.7.1-1) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libboost-regex1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libpython3.5:amd64 (3.5.3-3) ... Setting up python-dev (2.7.13-2) ... Setting up libpython3.5-dev:amd64 (3.5.3-3) ... Setting up libmpich-dev (3.2-7+b1) ... update-alternatives: using /usr/include/mpich to provide /usr/include/mpi (mpi) in auto mode Setting up libboost-test1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-regex-dev:amd64 (1.62.0.1) ... Setting up python3.5-dev (3.5.3-3) ... Setting up libpython3-dev:amd64 (3.5.3-3) ... Setting up liblapack-dev (3.7.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libboost-test1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-test-dev:amd64 (1.62.0.1) ... Setting up dh-autoreconf (14) ... Setting up python3 (3.5.3-3) ... Setting up python3-dev (3.5.3-3) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.6.2) ... Setting up libboost-python1.62-dev (1.62.0+dfsg-4+b1) ... Setting up libboost-python-dev (1.62.0.1) ... Setting up sbuild-build-depends-bagel-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-3.9_1:3.9.1-10 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 eatmydata_105-5 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-2 g++_4:6.3.0-4d1 g++-6_6.4.0-1 gcc_4:6.3.0-4d1 gcc-6_6.4.0-1 gcc-6-base_6.4.0-1 gcc-7-base_7.1.0-9 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gfortran_4:6.3.0-4d1 gfortran-6_6.4.0-1 gpgv_2.1.18-8 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 icu-devtools_57.1-6 init-system-helpers_1.48 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1 libatomic1_7.1.0-9 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblas-common_3.7.1-1 libblas-dev_3.7.1-1 libblas3_3.7.1-1 libblkid1_2.29.2-1 libboost-chrono1.62.0_1.62.0+dfsg-4+b1 libboost-python-dev_1.62.0.1 libboost-python1.62-dev_1.62.0+dfsg-4+b1 libboost-python1.62.0_1.62.0+dfsg-4+b1 libboost-regex-dev_1.62.0.1 libboost-regex1.62-dev_1.62.0+dfsg-4+b1 libboost-regex1.62.0_1.62.0+dfsg-4+b1 libboost-serialization-dev_1.62.0.1 libboost-serialization1.62-dev_1.62.0+dfsg-4+b1 libboost-serialization1.62.0_1.62.0+dfsg-4+b1 libboost-system1.62.0_1.62.0+dfsg-4+b1 libboost-test-dev_1.62.0.1 libboost-test1.62-dev_1.62.0+dfsg-4+b1 libboost-test1.62.0_1.62.0+dfsg-4+b1 libboost-timer1.62.0_1.62.0+dfsg-4+b1 libboost1.62-dev_1.62.0+dfsg-4+b1 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-9 libcilkrts5_7.1.0-9 libclang-common-3.9-dev_1:3.9.1-10 libclang1-3.9_1:3.9.1-10 libcomerr2_1.43.4-2 libcr-dev_0.8.5-2.3+b1 libcr0_0.8.5-2.3+b1 libcroco3_0.6.12-1 libdb5.3_5.3.28-12+b1 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libexpat1_2.2.1-3 libexpat1-dev_2.2.1-3 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-1 libgcc1_1:7.1.0-9 libgcrypt20_1.7.8-1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.4.0-1 libgfortran3_6.4.0-1 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.13-2 libgomp1_7.1.0-9 libgpg-error0_1.27-3 libhogweed4_3.3-1+b1 libicu-dev_57.1-6 libicu57_57.1-6 libidn2-0_0.16-1+b1 libisl15_0.18-1 libitm1_7.1.0-9 libjsoncpp1_1.7.4-3 liblapack-dev_3.7.1-1 liblapack3_3.7.1-1 libllvm3.9_1:3.9.1-10 liblsan0_7.1.0-9 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.2+b1 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpich-dev_3.2-7+b1 libmpich12_3.2-7+b1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libpython3-dev_3.5.3-3 libpython3-stdlib_3.5.3-3 libpython3.5_3.5.3-3 libpython3.5-dev_3.5.3-3 libpython3.5-minimal_3.5.3-3 libpython3.5-stdlib_3.5.3-3 libquadmath0_7.1.0-9 libreadline7_7.0-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-1 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libxc-dev_3.0.0-1 libxc4_3.0.0-1 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 po-debconf_1.0.20 python_2.7.13-2 python-dev_2.7.13-2 python-minimal_2.7.13-2 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 python3_3.5.3-3 python3-dev_3.5.3-3 python3-minimal_3.5.3-3 python3.5_3.5.3-3 python3.5-dev_3.5.3-3 python3.5-minimal_3.5.3-3 readline-common_7.0-3 sbuild-build-depends-bagel-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 util-linux_2.29.2-1 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 17 20:30:04 2017 UTC gpgv: using RSA key DC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bagel_0.0~git20170109-1.dsc dpkg-source: info: extracting bagel in /<> dpkg-source: info: unpacking bagel_0.0~git20170109.orig.tar.gz dpkg-source: info: unpacking bagel_0.0~git20170109-1.debian.tar.xz dpkg-source: info: applying fix_linking_error.patch dpkg-source: info: applying skip_failing_testcases.patch dpkg-source: info: applying add_missing_includes.patch dpkg-source: info: applying install_all_basis_sets.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-3647fa1f-e757-4e08-8cd8-83fac26b1a04 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bagel dpkg-buildpackage: info: source version 0.0~git20170109-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build bagel-0.0~git20170109 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf /<>/src/testsuite make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:39: installing './config.guess' configure.ac:39: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ --datadir=/usr/share/bagel \ --libdir=/usr/lib/bagel \ --enable-static \ --disable-shared \ --with-boost \ --with-libxc=yes \ --with-mpi=openmpi \ --disable-scalapack \ --enable-smith ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-libxc=yes --with-mpi=openmpi --disable-scalapack --enable-smith configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none ..openmpi requested.. checking for mpicc... mpicc checking for mpicxx... mpicxx checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking dependency style of mpicc... (cached) none checking whether we are using the GNU C++ compiler... (cached) yes checking whether mpicxx accepts -g... (cached) yes checking dependency style of mpicxx... (cached) none checking whether mpicxx supports C++11 features by default... no checking whether mpicxx supports C++11 features with -std=c++11... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... no checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for boostlib >= 1.53... yes checking for main in -lboost_serialization-gcc-mt... no checking for main in -lboost_serialization-mt... no checking for main in -lboost_serialization... yes checking if boost::serialization works... yes checking for main in -lboost_regex-gcc-mt... no checking for main in -lboost_regex-mt... no checking for main in -lboost_regex... yes checking for main in -lboost_unit_test_framework-gcc-mt... no checking for main in -lboost_unit_test_framework-mt... no checking for main in -lboost_unit_test_framework... yes checking xc.h usability... yes checking xc.h presence... yes checking for xc.h... yes checking for main in -lxc... yes checking for zgemm3m_... no checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/util/Makefile config.status: creating src/util/input/Makefile config.status: creating src/util/io/Makefile config.status: creating src/util/parallel/Makefile config.status: creating src/util/math/Makefile config.status: creating src/asd/multisite/Makefile config.status: creating src/asd/dimer/Makefile config.status: creating src/asd/dmrg/Makefile config.status: creating src/asd/orbital/Makefile config.status: creating src/asd/Makefile config.status: creating src/wfn/Makefile config.status: creating src/grad/Makefile config.status: creating src/integral/Makefile config.status: creating src/scf/Makefile config.status: creating src/df/Makefile config.status: creating src/prop/Makefile config.status: creating src/smith/Makefile config.status: creating src/molecule/Makefile config.status: creating src/pt2/Makefile config.status: creating src/ci/Makefile config.status: creating src/ci/ciutil/Makefile config.status: creating src/ci/fci/Makefile config.status: creating src/ci/zfci/Makefile config.status: creating src/ci/ras/Makefile config.status: creating src/multi/Makefile config.status: creating src/multi/casscf/Makefile config.status: creating src/multi/zcasscf/Makefile config.status: creating src/mat1e/Makefile config.status: creating src/periodic/Makefile config.status: creating src/opt/Makefile config.status: creating src/alglib/Makefile config.status: creating src/basis/Makefile config.status: creating bagel_config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' Making all in util make[4]: Entering directory '/<>/src/util' Making all in parallel make[5]: Entering directory '/<>/src/util/parallel' /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../../.. -g -O2 -DNDEBUG -DZDOT_RETURN -std=c++11 -c -o process.lo process.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../../.. -g -O2 -DNDEBUG -DZDOT_RETURN -std=c++11 -c process.cc -o process.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../../.. -g -O2 -DNDEBUG -DZDOT_RETURN -std=c++11 -c -o mpi_interface.lo mpi_interface.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../../.. -g -O2 -DNDEBUG -DZDOT_RETURN -std=c++11 -c mpi_interface.cc -o mpi_interface.o In file included from mpi_interface.cc:31: ../../../src/util/f77.h:57:23: warning: 'zdotc_' has C-linkage specified, but returns user-defined type 'std::complex' which is incompatible with C [-Wreturn-type-c-linkage] std::complex zdotc_(const int*, const std::complex*, const int*, const std::complex*, const int*); ^ ../../../src/util/f77.h:58:23: warning: 'zdotu_' has C-linkage specified, but returns user-defined type 'std::complex' which is incompatible with C [-Wreturn-type-c-linkage] std::complex zdotu_(const int*, const std::complex*, const int*, const std::complex*, const int*); ^ 2 warnings generated. /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../../.. -g -O2 -DNDEBUG -DZDOT_RETURN -std=c++11 -c -o rmawindow.lo rmawindow.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../../.. -g -O2 -DNDEBUG -DZDOT_RETURN -std=c++11 -c rmawindow.cc -o rmawindow.o In file included from rmawindow.cc:27: In file included from ../../../src/util/math/algo.h:35: ../../../src/util/f77.h:57:23: warning: 'zdotc_' has C-linkage specified, but returns user-defined type 'std::complex' which is incompatible with C [-Wreturn-type-c-linkage] std::complex zdotc_(const int*, const std::complex*, const int*, const std::complex*, const int*); ^ ../../../src/util/f77.h:58:23: warning: 'zdotu_' has C-linkage specified, but returns user-defined type 'std::complex' which is incompatible with C [-Wreturn-type-c-linkage] std::complex zdotu_(const int*, const std::complex*, const int*, const std::complex*, const int*); ^ rmawindow.cc:343:16: error: explicit instantiation of 'bagel::RMATask' must occur in namespace 'bagel' template class RMATask; ^ ../../../src/util/parallel/rmawindow.h:39:7: note: explicit instantiation refers here class RMATask { ^ rmawindow.cc:344:16: error: explicit instantiation of 'bagel::RMATask' must occur in namespace 'bagel' template class RMATask>; ^ ../../../src/util/parallel/rmawindow.h:39:7: note: explicit instantiation refers here class RMATask { ^ rmawindow.cc:345:16: error: explicit instantiation of 'bagel::RMAWindow' must occur in namespace 'bagel' template class RMAWindow; ^ ../../../src/util/parallel/rmawindow.h:57:7: note: explicit instantiation refers here class RMAWindow { ^ rmawindow.cc:346:16: error: explicit instantiation of 'bagel::RMAWindow' must occur in namespace 'bagel' template class RMAWindow>; ^ ../../../src/util/parallel/rmawindow.h:57:7: note: explicit instantiation refers here class RMAWindow { ^ 2 warnings and 4 errors generated. Makefile:444: recipe for target 'rmawindow.lo' failed make[5]: *** [rmawindow.lo] Error 1 make[5]: Leaving directory '/<>/src/util/parallel' Makefile:500: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/<>/src/util' Makefile:584: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/<>/src' Makefile:416: recipe for target 'all-recursive' failed make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory '/<>' Makefile:348: recipe for target 'all' failed make[1]: *** [all] Error 2 make[1]: Leaving directory '/<>' dh_auto_build: make -j1 returned exit code 2 debian/rules:9: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T16:12:28Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 121496 Build-Time: 18 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 22 Job: bagel_0.0~git20170109-1 Machine Architecture: amd64 Package: bagel Package-Time: 57 Source-Version: 0.0~git20170109-1 Space: 121496 Status: attempted Version: 0.0~git20170109-1 -------------------------------------------------------------------------------- Finished at 2017-07-06T16:12:28Z Build needed 00:00:57, 121496k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 58.249396596s DC-Time-Estimation: 58.249396596 versus expected 6679 (r/m: 113.66213197577825 ; m: 58.249396596)