DC-Build-Header: pymol 1.8.4.0+dfsg-1 / 2017-07-06 20:50:40 +0000 DC-Task: type:rebuild-binarch-only source:pymol version:1.8.4.0+dfsg-1 chroot:unstable esttime:123 logfile:/tmp/pymol_1.8.4.0+dfsg-1_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang pymol_1.8.4.0+dfsg-1' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-35-127.eu-central-1.compute.internal +==============================================================================+ | pymol 1.8.4.0+dfsg-1 (amd64) Thu, 06 Jul 2017 20:50:40 +0000 | +==============================================================================+ Package: pymol Version: 1.8.4.0+dfsg-1 Source Version: 1.8.4.0+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-0006722e-dd6d-4850-ab0b-4a9fa517a329' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3827 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.9-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 251 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.9 amd64 1:3.9.1-10 [11.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.9 amd64 1:3.9.1-10 [5875 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.9-dev amd64 1:3.9.1-10 [2573 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.9 amd64 1:3.9.1-10 [37.4 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 0s (96.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9711 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.5-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../1-libncurses5_6.0+20161126-1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../3-libllvm3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libclang1-3.9:amd64. Preparing to unpack .../4-libclang1-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libclang1-3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-3.9-dev. Preparing to unpack .../8-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../9-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/pymol-E8YbxS + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debichem/packages/pymol.git Please use: git clone https://anonscm.debian.org/git/debichem/packages/pymol.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6821 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main pymol 1.8.4.0+dfsg-1 (dsc) [2186 B] Get:2 http://127.0.0.1:9999/debian unstable/main pymol 1.8.4.0+dfsg-1 (tar) [6764 kB] Get:3 http://127.0.0.1:9999/debian unstable/main pymol 1.8.4.0+dfsg-1 (diff) [55.6 kB] Fetched 6821 kB in 0s (88.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pymol-E8YbxS/pymol-1.8.4.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/pymol-E8YbxS' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ahMWGe/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-ahMWGe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ahMWGe/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-ahMWGe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ahMWGe/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-ahMWGe/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ahMWGe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libpng-dev, python, python-dev, python-numpy, texlive-latex-base, tk-dev, libxml2-dev Filtered Build-Depends: debhelper (>= 9), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libpng-dev, python, python-dev, python-numpy, texlive-latex-base, tk-dev, libxml2-dev dpkg-deb: building package 'sbuild-build-depends-pymol-dummy' in '/<>/resolver-ahMWGe/apt_archive/sbuild-build-depends-pymol-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pymol-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-ahMWGe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ahMWGe/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-ahMWGe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ahMWGe/apt_archive ./ Sources [557 B] Get:5 copy:/<>/resolver-ahMWGe/apt_archive ./ Packages [646 B] Fetched 2166 B in 0s (0 B/s) Reading package lists... Reading package lists... Install pymol build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libcairo2 libcroco3 libcups2 libcupsimage2 libdbus-1-3 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew-dev libglew2.0 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libmagic-mgc libmagic1 libmpdec2 libnspr4 libnss3 libopenjp2-7 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpoppler64 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.1 libsynctex1 libtcl8.6 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtk8.6 libtool libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxml2 libxml2-dev libxmu6 libxpm4 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libzzip-0-13 lsb-base m4 man-db mesa-common-dev mime-support pkg-config po-debconf poppler-data python python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal readline-common t1utils tcl tcl-dev tcl8.6 tcl8.6-dev tex-common texlive-base texlive-binaries texlive-latex-base tk tk-dev tk8.6 tk8.6-dev tzdata ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff cups-common glew-utils krb5-doc krb5-user libice-doc icu-doc liblcms2-utils pciutils libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc libxt-doc m4-doc less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc readline-doc tcl-doc tcl-tclreadline tcl8.6-doc gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer tk-doc tk8.6-doc gvfs-bin Recommended packages: curl | wget | lynx-cur libcupsfilters1 dbus libarchive-cpio-perl libgl1-mesa-dri libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libpng-tools libltdl-dev libx11-doc xml-core libmail-sendmail-perl lmodern ruby texlive-latex-base-doc xterm | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libcairo2 libcroco3 libcups2 libcupsimage2 libdbus-1-3 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew-dev libglew2.0 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libmagic-mgc libmagic1 libmpdec2 libnspr4 libnss3 libopenjp2-7 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpoppler64 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.1 libsynctex1 libtcl8.6 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtk8.6 libtool libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxml2 libxml2-dev libxmu6 libxpm4 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libzzip-0-13 lsb-base m4 man-db mesa-common-dev mime-support pkg-config po-debconf poppler-data python python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal readline-common sbuild-build-depends-pymol-dummy t1utils tcl tcl-dev tcl8.6 tcl8.6-dev tex-common texlive-base texlive-binaries texlive-latex-base tk tk-dev tk8.6 tk8.6-dev tzdata ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 222 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After this operation, 508 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ahMWGe/apt_archive ./ sbuild-build-depends-pymol-dummy 0.invalid.0 [856 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.13-2 [389 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.13-2 [1383 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.16.2-5 [572 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-3 [1342 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.13-2 [1895 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.13-2 [285 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.4-3 [290 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.4-3 [747 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 poppler-data all 0.4.7-8 [1451 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.3-3 [577 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.3-3 [1695 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.3-3 [35.4 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.3-3 [2170 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.3-3 [237 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.3-3 [18.8 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20170125 [86.8 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.3-3 [21.8 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 tex-common all 6.07 [566 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 tzdata all 2017b-2 [260 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.15-1 [61.7 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.15-1 [119 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.15-1 [311 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.15-1 [154 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-1 [115 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.12.3-0.1 [303 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 fonts-lmodern all 2.004.5-3 [4540 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libdrm2 amd64 2.4.81-2 [38.4 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libglapi-mesa amd64 17.1.4-1 [59.7 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.4-3 [183 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libgl1-mesa-glx amd64 17.1.4-1 [167 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 freeglut3 amd64 2.8.1-3 [123 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 7.0.31-1 [728 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-input-dev all 2.3.2-1 [158 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-kb-dev all 1.0.7-1 [233 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.12-1 [169 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.4-3 [815 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-intel1 amd64 2.4.81-2 [69.5 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.81-2 [30.5 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.81-2 [25.5 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.81-2 [27.2 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-dev amd64 2.4.81-2 [240 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 mesa-common-dev amd64 17.1.4-1 [537 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libx11-xcb-dev amd64 2:1.6.4-3 [185 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri3-dev amd64 1.12-1 [96.1 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-randr0 amd64 1.12-1 [107 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0-dev amd64 1.12-1 [109 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-randr0-dev amd64 1.12-1 [110 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shape0-dev amd64 1.12-1 [97.4 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-xfixes0-dev amd64 1.12-1 [102 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-sync-dev amd64 1.12-1 [101 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-present-dev amd64 1.12-1 [97.2 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libxshmfence-dev amd64 1.2-1+b2 [7420 B] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri2-0-dev amd64 1.12-1 [98.8 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-glx0-dev amd64 1.12-1 [118 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-fixes-dev all 1:5.0-2 [19.2 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libxfixes-dev amd64 1:5.0.3-1 [23.8 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-damage-dev all 1:1.2.1-2 [11.8 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libxdamage-dev amd64 1:1.1.4-2+b3 [14.3 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-xf86vidmode-dev all 2.3.1-2 [6114 B] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libxxf86vm-dev amd64 1:1.1.4-1+b2 [25.4 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-dri2-dev all 2.8-2 [18.2 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-gl-dev all 1.4.17-1 [28.0 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libgl1-mesa-dev amd64 17.1.4-1 [42.1 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1 [202 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libsm-dev amd64 2:1.2.2-1+b3 [35.8 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 libxt-dev amd64 1:1.1.5-1 [423 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 freeglut3-dev amd64 2.8.1-3 [177 kB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-6 [178 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 libdbus-1-3 amd64 1.10.20-1 [193 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libblas-common amd64 3.7.1-1 [14.6 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-1 [265 kB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.7.1-1 [156 kB] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.29-3 [281 kB] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8-0.2 [449 kB] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.12.3-0.1 [366 kB] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.14.10-1 [774 kB] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 libcups2 amd64 2.2.4-1 [313 kB] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 libcupsimage2 amd64 2.2.4-1 [125 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.1-3 [137 kB] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 libpng-dev amd64 1.6.29-3 [251 kB] Get:161 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6-dev amd64 2.8-0.2 [2652 kB] Get:162 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:163 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1-dev amd64 2.12.3-0.1 [909 kB] Get:164 http://127.0.0.1:9999/debian unstable/main amd64 libglew2.0 amd64 2.0.0-4 [143 kB] Get:165 http://127.0.0.1:9999/debian unstable/main amd64 libglew-dev amd64 2.0.0-4 [126 kB] Get:166 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.10-2 [84.3 kB] Get:167 http://127.0.0.1:9999/debian unstable/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:168 http://127.0.0.1:9999/debian unstable/main amd64 libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:169 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:170 http://127.0.0.1:9999/debian unstable/main amd64 liblcms2-2 amd64 2.8-4 [143 kB] Get:171 http://127.0.0.1:9999/debian unstable/main amd64 libopenjp2-7 amd64 2.1.2-1.1 [121 kB] Get:172 http://127.0.0.1:9999/debian unstable/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:173 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:174 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.8-3 [237 kB] Get:175 http://127.0.0.1:9999/debian unstable/main amd64 libgs9-common all 9.21~dfsg-1 [5164 kB] Get:176 http://127.0.0.1:9999/debian unstable/main amd64 libgs9 amd64 9.21~dfsg-1 [2142 kB] Get:177 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:178 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz-icu0 amd64 1.4.2-1 [466 kB] Get:179 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-6 [16.5 MB] Get:180 http://127.0.0.1:9999/debian unstable/main amd64 libkpathsea6 amd64 2017.20170613.44572-2 [161 kB] Get:181 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.7.1-1 [2141 kB] Get:182 http://127.0.0.1:9999/debian unstable/main amd64 libnspr4 amd64 2:4.15-1 [117 kB] Get:183 http://127.0.0.1:9999/debian unstable/main amd64 libnss3 amd64 2:3.31-1 [1160 kB] Get:184 http://127.0.0.1:9999/debian unstable/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:185 http://127.0.0.1:9999/debian unstable/main amd64 libpoppler64 amd64 0.48.0-2 [1285 kB] Get:186 http://127.0.0.1:9999/debian unstable/main amd64 libpotrace0 amd64 1.14-2 [25.7 kB] Get:187 http://127.0.0.1:9999/debian unstable/main amd64 libptexenc1 amd64 2017.20170613.44572-2 [58.1 kB] Get:188 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.13-2 [1072 kB] Get:189 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.13-2 [28.2 MB] Get:190 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.13-2 [20.1 kB] Get:191 http://127.0.0.1:9999/debian unstable/main amd64 libsynctex1 amd64 2017.20170613.44572-2 [65.1 kB] Get:192 http://127.0.0.1:9999/debian unstable/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:193 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua52 amd64 2017.20170613.44572-2 [111 kB] Get:194 http://127.0.0.1:9999/debian unstable/main amd64 libtexluajit2 amd64 2017.20170613.44572-2 [250 kB] Get:195 http://127.0.0.1:9999/debian unstable/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:196 http://127.0.0.1:9999/debian unstable/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:197 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:198 http://127.0.0.1:9999/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:199 http://127.0.0.1:9999/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:200 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:201 http://127.0.0.1:9999/debian unstable/main amd64 libxrender-dev amd64 1:0.9.10-1 [40.8 kB] Get:202 http://127.0.0.1:9999/debian unstable/main amd64 libxft-dev amd64 2.3.2-1+b2 [68.0 kB] Get:203 http://127.0.0.1:9999/debian unstable/main amd64 libxml2-dev amd64 2.9.4+dfsg1-3 [812 kB] Get:204 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:205 http://127.0.0.1:9999/debian unstable/main amd64 libxss-dev amd64 1:1.2.2-1 [22.8 kB] Get:206 http://127.0.0.1:9999/debian unstable/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [55.4 kB] Get:207 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.13-2 [281 kB] Get:208 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.13-2 [1126 B] Get:209 http://127.0.0.1:9999/debian unstable/main amd64 python-numpy amd64 1:1.12.1-3+b2 [1936 kB] Get:210 http://127.0.0.1:9999/debian unstable/main amd64 t1utils amd64 1.39-2 [59.0 kB] Get:211 http://127.0.0.1:9999/debian unstable/main amd64 tcl8.6 amd64 8.6.6+dfsg-1+b1 [123 kB] Get:212 http://127.0.0.1:9999/debian unstable/main amd64 tcl amd64 8.6.0+9 [5468 B] Get:213 http://127.0.0.1:9999/debian unstable/main amd64 tcl8.6-dev amd64 8.6.6+dfsg-1+b1 [990 kB] Get:214 http://127.0.0.1:9999/debian unstable/main amd64 tcl-dev amd64 8.6.0+9 [7920 B] Get:215 http://127.0.0.1:9999/debian unstable/main amd64 texlive-binaries amd64 2017.20170613.44572-2 [8082 kB] Get:216 http://127.0.0.1:9999/debian unstable/main amd64 xdg-utils all 1.1.1-1 [71.1 kB] Get:217 http://127.0.0.1:9999/debian unstable/main amd64 texlive-base all 2017.20170629-1 [18.7 MB] Get:218 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-base all 2017.20170629-1 [975 kB] Get:219 http://127.0.0.1:9999/debian unstable/main amd64 tk8.6 amd64 8.6.6-1+b1 [71.8 kB] Get:220 http://127.0.0.1:9999/debian unstable/main amd64 tk amd64 8.6.0+9 [5506 B] Get:221 http://127.0.0.1:9999/debian unstable/main amd64 tk8.6-dev amd64 8.6.6-1+b1 [739 kB] Get:222 http://127.0.0.1:9999/debian unstable/main amd64 tk-dev amd64 8.6.0+9 [5298 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 153 MB in 1s (91.8 MB/s) Selecting previously unselected package groff-base. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.13-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.13-2_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2) ... 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Unpacking python (2.7.13-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../01-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../02-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../03-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../04-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../05-libx11-6_2%3a1.6.4-3_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../06-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... 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Setting up libssl1.1:amd64 (1.1.0f-3) ... Setting up libpython3.5-minimal:amd64 (3.5.3-3) ... Setting up libexpat1:amd64 (2.2.1-3) ... Setting up python3.5-minimal (3.5.3-3) ... Setting up python3-minimal (3.5.3-3) ... Selecting previously unselected package python3. (Reading database ... 13387 files and directories currently installed.) Preparing to unpack .../000-python3_3.5.3-3_amd64.deb ... Unpacking python3 (3.5.3-3) ... Selecting previously unselected package ucf. Preparing to unpack .../001-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package tex-common. Preparing to unpack .../002-tex-common_6.07_all.deb ... Unpacking tex-common (6.07) ... Selecting previously unselected package tzdata. Preparing to unpack .../003-tzdata_2017b-2_all.deb ... Unpacking tzdata (2017b-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.30-1_amd64.deb ... 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Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up xdg-utils (1.1.1-1) ... Setting up libtexluajit2:amd64 (2017.20170613.44572-2) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-2) ... Setting up libidn11:amd64 (1.33-1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libdbus-1-3:amd64 (1.10.20-1) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.12.3-0.1) ... Setting up tex-common (6.07) ... update-language: texlive-base not installed and configured, doing nothing! Setting up x11proto-core-dev (7.0.31-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.81-2) ... Setting up libxshmfence-dev:amd64 (1.2-1+b2) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up liblapack3 (3.7.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.3-3) ... Setting up python2.7 (2.7.13-2) ... Setting up libnss3:amd64 (2:3.31-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-6) ... Setting up file (1:5.30-1) ... Setting up libkrb5support0:amd64 (1.15-1) ... Setting up libxml2-dev:amd64 (2.9.4+dfsg1-3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:amd64 (2.4.81-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up tcl8.6 (8.6.6+dfsg-1+b1) ... Setting up libpython2.7:amd64 (2.7.13-2) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libpython2.7-dev:amd64 (2.7.13-2) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libpng-dev:amd64 (1.6.29-3) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up python2.7-dev (2.7.13-2) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up python (2.7.13-2) ... Setting up tcl8.6-dev:amd64 (8.6.6+dfsg-1+b1) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.3-3) ... Setting up libpython3-stdlib:amd64 (3.5.3-3) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libpython-dev:amd64 (2.7.13-2) ... Setting up libfontconfig1:amd64 (2.12.3-0.1) ... 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Setting up libgl1-mesa-glx:amd64 (17.1.4-1) ... Setting up libglew2.0:amd64 (2.0.0-4) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up libxcb-present-dev:amd64 (1.12-1) ... Setting up libgs9:amd64 (9.21~dfsg-1) ... Setting up freeglut3:amd64 (2.8.1-3) ... Setting up tk8.6 (8.6.6-1+b1) ... Setting up tk8.6-dev:amd64 (8.6.6-1+b1) ... Setting up texlive-binaries (2017.20170613.44572-2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libgl1-mesa-dev:amd64 (17.1.4-1) ... Setting up tk (8.6.0+9) ... Setting up texlive-base (2017.20170629-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Setting up texlive-latex-base (2017.20170629-1) ... Setting up libglu1-mesa-dev:amd64 (9.0.0-2.1) ... Setting up tk-dev:amd64 (8.6.0+9) ... Setting up libglew-dev:amd64 (2.0.0-4) ... Setting up freeglut3-dev:amd64 (2.8.1-3) ... Setting up python3 (3.5.3-3) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.6.2) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up sbuild-build-depends-pymol-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-12) ... Processing triggers for tex-common (6.07) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-3.9_1:3.9.1-10 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 eatmydata_105-5 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-2 fontconfig-config_2.12.3-0.1 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 freeglut3_2.8.1-3 freeglut3-dev_2.8.1-3 g++_4:6.3.0-4d1 g++-6_6.4.0-1 gcc_4:6.3.0-4d1 gcc-6_6.4.0-1 gcc-6-base_6.4.0-1 gcc-7-base_7.1.0-9 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.18-8 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 icu-devtools_57.1-6 init-system-helpers_1.48 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1 libatomic1_7.1.0-9 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libavahi-client3_0.6.32-2 libavahi-common-data_0.6.32-2 libavahi-common3_0.6.32-2 libblas-common_3.7.1-1 libblas3_3.7.1-1 libblkid1_2.29.2-1 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcairo2_1.14.10-1 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-9 libcilkrts5_7.1.0-9 libclang-common-3.9-dev_1:3.9.1-10 libclang1-3.9_1:3.9.1-10 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcups2_2.2.4-1 libcupsimage2_2.2.4-1 libdb5.3_5.3.28-12+b1 libdbus-1-3_1.10.20-1 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libdrm-amdgpu1_2.4.81-2 libdrm-dev_2.4.81-2 libdrm-intel1_2.4.81-2 libdrm-nouveau2_2.4.81-2 libdrm-radeon1_2.4.81-2 libdrm2_2.4.81-2 libeatmydata1_105-5 libedit2_3.1-20170329-1 libexpat1_2.2.1-3 libexpat1-dev_2.2.1-3 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libfontconfig1_2.12.3-0.1 libfontconfig1-dev_2.12.3-0.1 libfreetype6_2.8-0.2 libfreetype6-dev_2.8-0.2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-1 libgcc1_1:7.1.0-9 libgcrypt20_1.7.8-1 libgdbm3_1.8.3-14 libgfortran3_6.4.0-1 libgl1-mesa-dev_17.1.4-1 libgl1-mesa-glx_17.1.4-1 libglapi-mesa_17.1.4-1 libglew-dev_2.0.0-4 libglew2.0_2.0.0-4 libglib2.0-0_2.52.3-1 libglu1-mesa_9.0.0-2.1 libglu1-mesa-dev_9.0.0-2.1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.13-2 libgomp1_7.1.0-9 libgpg-error0_1.27-3 libgraphite2-3_1.3.10-2 libgs9_9.21~dfsg-1 libgs9-common_9.21~dfsg-1 libgssapi-krb5-2_1.15-1 libharfbuzz-icu0_1.4.2-1 libharfbuzz0b_1.4.2-1 libhogweed4_3.3-1+b1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-dev_57.1-6 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1+b1 libijs-0.35_0.35-12 libisl15_0.18-1 libitm1_7.1.0-9 libjbig0_2.1-3.1+b2 libjbig2dec0_0.13-4.1 libjpeg62-turbo_1:1.5.1-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libkpathsea6_2017.20170613.44572-2 libkrb5-3_1.15-1 libkrb5support0_1.15-1 liblapack3_3.7.1-1 liblcms2-2_2.8-4 libllvm3.9_1:3.9.1-10 liblsan0_7.1.0-9 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.2+b1 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libnspr4_2:4.15-1 libnss3_2:3.31-1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libopenjp2-7_2.1.2-1.1 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpciaccess0_0.13.4-1+b2 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng-dev_1.6.29-3 libpng16-16_1.6.29-3 libpoppler64_0.48.0-2 libpotrace0_1.14-2 libptexenc1_2017.20170613.44572-2 libpthread-stubs0-dev_0.3-4 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libpython3-stdlib_3.5.3-3 libpython3.5-minimal_3.5.3-3 libpython3.5-stdlib_3.5.3-3 libquadmath0_7.1.0-9 libreadline7_7.0-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.29.2-1 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsynctex1_2017.20170613.44572-2 libsystemd0_233-10 libtasn1-6_4.12-2 libtcl8.6_8.6.6+dfsg-1+b1 libtexlua52_2017.20170613.44572-2 libtexluajit2_2017.20170613.44572-2 libtiff5_4.0.8-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtk8.6_8.6.6-1+b1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libx11-xcb-dev_2:1.6.4-3 libx11-xcb1_2:1.6.4-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1+b2 libxcb-dri2-0_1.12-1 libxcb-dri2-0-dev_1.12-1 libxcb-dri3-0_1.12-1 libxcb-dri3-dev_1.12-1 libxcb-glx0_1.12-1 libxcb-glx0-dev_1.12-1 libxcb-present-dev_1.12-1 libxcb-present0_1.12-1 libxcb-randr0_1.12-1 libxcb-randr0-dev_1.12-1 libxcb-render0_1.12-1 libxcb-render0-dev_1.12-1 libxcb-shape0_1.12-1 libxcb-shape0-dev_1.12-1 libxcb-shm0_1.12-1 libxcb-sync-dev_1.12-1 libxcb-sync1_1.12-1 libxcb-xfixes0_1.12-1 libxcb-xfixes0-dev_1.12-1 libxcb1_1.12-1 libxcb1-dev_1.12-1 libxdamage-dev_1:1.1.4-2+b3 libxdamage1_1:1.1.4-2+b3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxft-dev_2.3.2-1+b2 libxft2_2.3.2-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-3 libxml2-dev_2.9.4+dfsg1-3 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.2-1+b2 libxshmfence1_1.2-1+b2 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mesa-common-dev_17.1.4-1 mime-support_3.60 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 pkg-config_0.29-4+b1 po-debconf_1.0.20 poppler-data_0.4.7-8 python_2.7.13-2 python-dev_2.7.13-2 python-minimal_2.7.13-2 python-numpy_1:1.12.1-3+b2 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 python3_3.5.3-3 python3-minimal_3.5.3-3 python3.5_3.5.3-3 python3.5-minimal_3.5.3-3 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pymol-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.9 t1utils_1.39-2 tar_1.29b-1.1 tcl_8.6.0+9 tcl-dev_8.6.0+9 tcl8.6_8.6.6+dfsg-1+b1 tcl8.6-dev_8.6.6+dfsg-1+b1 tex-common_6.07 texlive-base_2017.20170629-1 texlive-binaries_2017.20170613.44572-2 texlive-latex-base_2017.20170629-1 tk_8.6.0+9 tk-dev_8.6.0+9 tk8.6_8.6.6-1+b1 tk8.6-dev_8.6.6-1+b1 tzdata_2017b-2 ucf_3.0036 util-linux_2.29.2-1 x11-common_1:7.7+19 x11proto-core-dev_7.0.31-1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xdg-utils_1.1.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 20 15:55:52 2016 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pymol_1.8.4.0+dfsg-1.dsc dpkg-source: info: extracting pymol in /<>/pymol-1.8.4.0+dfsg dpkg-source: info: unpacking pymol_1.8.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_1.8.4.0+dfsg-1.debian.tar.xz dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 29_fix_path_to_splash.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-0006722e-dd6d-4850-ab0b-4a9fa517a329 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 1.8.4.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build pymol-1.8.4.0+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/pymol-1.8.4.0+dfsg' [ ! -f Makefile ] || /usr/bin/make distclean dh_auto_clean -Spython_distutils python setup.py clean -a running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>/pymol-1.8.4.0+dfsg' debian/rules override_dh_clean make[1]: Entering directory '/<>/pymol-1.8.4.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/<>/pymol-1.8.4.0+dfsg' debian/rules build-arch dh build-arch --with python2 --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/pymol-1.8.4.0+dfsg' dh_auto_configure -Spython_distutils make[1]: Leaving directory '/<>/pymol-1.8.4.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/pymol-1.8.4.0+dfsg' dh_auto_build -Spython_distutils python setup.py build --force running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/chempy/mmtf copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-2.7/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-2.7/chempy/mmtf creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/web copying modules/web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/web copying modules/web/__init__.py -> build/lib.linux-x86_64-2.7/web copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 creating build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/__init__.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/morphing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-x86_64-2.7/layer0/Map.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-x86_64-2.7/layer0/Word.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-x86_64-2.7/layer0/Debug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-x86_64-2.7/layer0/Feedback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-x86_64-2.7/layer0/Block.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-x86_64-2.7/layer0/Sphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-x86_64-2.7/layer0/Triangle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-x86_64-2.7/layer1/Wizard.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-x86_64-2.7/layer1/Font.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-x86_64-2.7/layer1/Rep.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-x86_64-2.7/layer0/Texture.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: clang: warningwarning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' : argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-x86_64-2.7/layer1/View.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-x86_64-2.7/layer0/Matrix.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-x86_64-2.7/layer0/Queue.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-x86_64-2.7/layer0/Util2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-x86_64-2.7/layer0/os_gl.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-x86_64-2.7/layer0/Util.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-x86_64-2.7/layer1/ButMode.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-x86_64-2.7/layer0/Vector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-x86_64-2.7/layer1/Color.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-x86_64-2.7/layer1/Extrude.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-x86_64-2.7/layer0/Field.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-x86_64-2.7/layer0/Match.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-x86_64-2.7/layer0/Crystal.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-x86_64-2.7/layer0/Err.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-x86_64-2.7/layer0/Parse.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-x86_64-2.7/layer1/CGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-x86_64-2.7/layer1/Setting.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-x86_64-2.7/layer1/FontType.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-x86_64-2.7/layer1/PConv.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-x86_64-2.7/layer1/Pop.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-x86_64-2.7/layer0/Deferred.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-x86_64-2.7/layer1/Basis.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-x86_64-2.7/layer0/Tracker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-x86_64-2.7/layer0/File.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-x86_64-2.7/layer1/Character.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-x86_64-2.7/layer1/Shaker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-x86_64-2.7/layer1/COLLADA.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-x86_64-2.7/layer1/Movie.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-x86_64-2.7/layer1/P.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-x86_64-2.7/layer1/Ortho.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-x86_64-2.7/layer1/Control.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfoHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-x86_64-2.7/layer2/DistSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-x86_64-2.7/layer1/Scene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-x86_64-2.7/layer2/MmodTyping.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-x86_64-2.7/layer2/VFont.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-x86_64-2.7/layer1/Text.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-2.7/layer2/BondTypeHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-x86_64-2.7/layer2/CifFile.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDot.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-x86_64-2.7/layer3/Selector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-2.7/layer3/MoleculeExporter.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-2.7/layer2/Mol2Typing.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-x86_64-2.7/layer3/MovieScene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-x86_64-2.7/layer4/PopUp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-x86_64-2.7/layer1/Ray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-x86_64-2.7/layer4/Menu.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(title, 82, fd); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 82, fd); ^~~~~ ~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 2 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:44: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:60: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-x86_64-2.7/layer4/Cmd.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-2.7/layer3/CifDataValueFormatter.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 8 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:27: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:32: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:44: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:44: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:60: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 10 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 9 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 1 warning generated. fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:27: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] fio_size_t bszmask; ^ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 11 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ 4 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 21 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-x86_64-2.7/layer5/main.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-x86_64-2.7/layer2/MolV3000.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 5 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, n, mf->f); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:8: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:8: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 4 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:166:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:185:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:178:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:243:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:225:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:299:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:280:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:359:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:321:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:78:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:86:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:96:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:202:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:254:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:272:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:286:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " %d", &cur); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:407:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(sdum, sizeof(sdum), file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:365:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(sdum, 512, file); ^~~~~ ~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:379:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:419:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file,parm7, ^~~~~~ ~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:423:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, parm7, ^~~~~~ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:431:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:76:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); // format ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-x86_64-2.7/layer3/Editor.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 9 warnings generated. 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 15 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type :203:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cppcontrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ :138:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cppcontrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ :419:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:234:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:467:17: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:439:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:441:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:443:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:445:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:447:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:504:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:405:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-x86_64-2.7/layer3/Executive.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:270:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 13, edm->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-2.7/layer2/SideChainHelper.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: clangwarning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' : warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 11 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 9 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line3, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3:clang warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15:: warning note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ 9 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 9 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:183:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(symData, 81, fd); ^~~~~ ~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, "%3s", keyWord); ^~~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 34 warnings generated. clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 9 warnings generated. 1 warning generated. In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:4: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 fscanf(file, " " DBLFMT, &prm->Pk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:141:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:356:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(cube->fd, "%d", &orb); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:351:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, cube->fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 4 warnings generated. 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-x86_64-2.7/layer4/Export.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' 17 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-x86_64-2.7/layer1/Seq.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-x86_64-2.7/layer3/Seeker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -fcommon -O3 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-HVkOs2/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Util2.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/File.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/COLLADA.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/MmodTyping.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/SideChainHelper.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/AtomInfoHistory.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/BondTypeHistory.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/CifMoleculeReader.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/CifFile.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/Mol2Typing.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer2/MolV3000.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/AtomIterators.o build/temp.linux-x86_64-2.7/layer3/MoleculeExporter.o build/temp.linux-x86_64-2.7/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/MovieScene.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -o build/lib.linux-x86_64-2.7/pymol/_cmd.so clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-link.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-1.8.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' contrib/champ/champ.c:2787:3: error: unterminated function-like macro invocation PRINTFD(FB_smiles_parsing) ^ contrib/champ/feedback2.h:122:61: note: expanded from macro 'PRINTFD' #define PRINTFD(sysmod) {if(feedback_(sysmod,FB_debugging)) fprintf(stderr, ^ /usr/include/x86_64-linux-gnu/bits/stdio2.h:109:11: note: macro 'fprintf' defined here # define fprintf(stream, ...) \ ^ contrib/champ/champ.c:5204:2: error: expected expression } ^ contrib/champ/champ.c:5204:2: error: expected '}' contrib/champ/champ.c:2787:3: note: to match this '{' PRINTFD(FB_smiles_parsing) ^ contrib/champ/feedback2.h:122:25: note: expanded from macro 'PRINTFD' #define PRINTFD(sysmod) {if(feedback_(sysmod,FB_debugging)) fprintf(stderr, ^ contrib/champ/champ.c:5204:2: error: expected '}' } ^ contrib/champ/champ.c:2776:1: note: to match this '{' { ^ 4 errors generated. error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 dh_auto_build: python setup.py build --force returned exit code 1 debian/rules:20: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 1 make[1]: Leaving directory '/<>/pymol-1.8.4.0+dfsg' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T20:51:47Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 110564 Build-Time: 21 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 30 Job: pymol_1.8.4.0+dfsg-1 Machine Architecture: amd64 Package: pymol Package-Time: 67 Source-Version: 1.8.4.0+dfsg-1 Space: 110564 Status: attempted Version: 1.8.4.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2017-07-06T20:51:47Z Build needed 00:01:07, 110564k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 67.480938193s DC-Time-Estimation: 67.480938193 versus expected 123 (r/m: 0.8227369579274634 ; m: 67.480938193)