DC-Build-Header: autodock-vina 1.1.2-3 / 2017-07-06 19:12:51 +0000 DC-Task: type:rebuild-binarch-only source:autodock-vina version:1.1.2-3 chroot:unstable esttime:542 logfile:/tmp/autodock-vina_1.1.2-3_unstable_clang4.0.log modes:clang40:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang40 autodock-vina_1.1.2-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-43-25.eu-central-1.compute.internal +==============================================================================+ | autodock-vina 1.1.2-3 (amd64) Thu, 06 Jul 2017 19:12:52 +0000 | +==============================================================================+ Package: autodock-vina Version: 1.1.2-3 Source Version: 1.1.2-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-65bf0b8d-ee0a-44e8-8ee1-32d1208b2ae8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang40 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=4.0 + echo 'Install of clang-4.0' Install of clang-4.0 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3943 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-4.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-4.0-dev libclang1-4.0 libedit2 libjsoncpp1 libllvm4.0 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-4.0-doc libomp-dev Recommended packages: llvm-4.0-dev python libgpm2 The following NEW packages will be installed: clang-4.0 libbsd0 libclang-common-4.0-dev libclang1-4.0 libedit2 libjsoncpp1 libllvm4.0 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 74.4 MB of archives. After this operation, 320 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm4.0 amd64 1:4.0.1-1 [12.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-4.0 amd64 1:4.0.1-1 [6355 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-4.0-dev amd64 1:4.0.1-1 [2495 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-4.0 amd64 1:4.0.1-1 [52.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.4 MB in 0s (96.8 MB/s) Selecting previously unselected package libbsd0:amd64. 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Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm4.0:amd64. Preparing to unpack .../3-libllvm4.0_1%3a4.0.1-1_amd64.deb ... Unpacking libllvm4.0:amd64 (1:4.0.1-1) ... Selecting previously unselected package libclang1-4.0:amd64. Preparing to unpack .../4-libclang1-4.0_1%3a4.0.1-1_amd64.deb ... Unpacking libclang1-4.0:amd64 (1:4.0.1-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-4.0-dev. Preparing to unpack .../8-libclang-common-4.0-dev_1%3a4.0.1-1_amd64.deb ... Unpacking libclang-common-4.0-dev (1:4.0.1-1) ... Selecting previously unselected package clang-4.0. Preparing to unpack .../9-clang-4.0_1%3a4.0.1-1_amd64.deb ... Unpacking clang-4.0 (1:4.0.1-1) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm4.0:amd64 (1:4.0.1-1) ... Setting up libclang1-4.0:amd64 (1:4.0.1-1) ... Setting up libclang-common-4.0-dev (1:4.0.1-1) ... Setting up clang-4.0 (1:4.0.1-1) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-4.0 g++-4.6 + ln -s clang-4.0 gcc-4.6 + ln -s clang-4.0 cpp-4.6 + ln -s clang-4.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-4.0 g++-4.7 + ln -s clang-4.0 gcc-4.7 + ln -s clang-4.0 cpp-4.7 + ln -s clang-4.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-4.0 g++-4.8 + ln -s clang-4.0 gcc-4.8 + ln -s clang-4.0 cpp-4.8 + ln -s clang-4.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-4.0 g++-4.9 + ln -s clang-4.0 gcc-4.9 + ln -s clang-4.0 cpp-4.9 + ln -s clang-4.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-4.0 g++-5 + ln -s clang-4.0 gcc-5 + ln -s clang-4.0 cpp-5 + ln -s clang-4.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-4.0 g++-6 + ln -s clang-4.0 gcc-6 + ln -s clang-4.0 cpp-6 + ln -s clang-4.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-4.0 g++-7 + ln -s clang-4.0 gcc-7 + ln -s clang-4.0 cpp-7 + ln -s clang-4.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/autodock-vina-QMTzif + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang40'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'autodock-vina' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/autodock-vina/trunk/ Need to get 76.6 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main autodock-vina 1.1.2-3 (dsc) [1483 B] Get:2 http://127.0.0.1:9999/debian unstable/main autodock-vina 1.1.2-3 (tar) [69.5 kB] Get:3 http://127.0.0.1:9999/debian unstable/main autodock-vina 1.1.2-3 (diff) [5628 B] Fetched 76.6 kB in 0s (657 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/autodock-vina-QMTzif/autodock-vina-1.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/autodock-vina-QMTzif' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-NqNX99/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-NqNX99/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NqNX99/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-NqNX99/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NqNX99/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-NqNX99/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 782 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-NqNX99/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [782 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 782 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10206 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), libboost-all-dev Filtered Build-Depends: debhelper (>= 9), libboost-all-dev dpkg-deb: building package 'sbuild-build-depends-autodock-vina-dummy' in '/<>/resolver-NqNX99/apt_archive/sbuild-build-depends-autodock-vina-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-autodock-vina-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-NqNX99/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NqNX99/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NqNX99/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NqNX99/apt_archive ./ Sources [501 B] Get:5 copy:/<>/resolver-NqNX99/apt_archive ./ Packages [583 B] Fetched 2047 B in 0s (0 B/s) Reading package lists... Reading package lists... Install autodock-vina build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-all-dev libboost-atomic-dev libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono-dev libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-context-dev libboost-context1.62-dev libboost-context1.62.0 libboost-coroutine-dev libboost-coroutine1.62-dev libboost-coroutine1.62.0 libboost-date-time-dev libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-exception-dev libboost-exception1.62-dev libboost-fiber-dev libboost-fiber1.62-dev libboost-fiber1.62.0 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.62-dev libboost-graph-parallel1.62.0 libboost-graph1.62-dev libboost-graph1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-locale-dev libboost-locale1.62-dev libboost-locale1.62.0 libboost-log-dev libboost-log1.62-dev libboost-log1.62.0 libboost-math-dev libboost-math1.62-dev libboost-math1.62.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.62-dev libboost-mpi-python1.62.0 libboost-mpi1.62-dev libboost-mpi1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-random-dev libboost-random1.62-dev libboost-random1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization-dev libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-signals-dev libboost-signals1.62-dev libboost-signals1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost-timer-dev libboost-timer1.62-dev libboost-timer1.62.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.62-dev libboost-type-erasure1.62.0 libboost-wave-dev libboost-wave1.62-dev libboost-wave1.62.0 libboost1.62-dev libboost1.62-tools-dev libcroco3 libexpat1 libexpat1-dev libfabric1 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib librdmacm1 libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc graphviz libboost1.62-doc gccxml libmpfrc++-dev libntl-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop libhwloc-contrib-plugins icu-doc libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser opencl-icd gfortran libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc readline-doc Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-all-dev libboost-atomic-dev libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono-dev libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-context-dev libboost-context1.62-dev libboost-context1.62.0 libboost-coroutine-dev libboost-coroutine1.62-dev libboost-coroutine1.62.0 libboost-date-time-dev libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-exception-dev libboost-exception1.62-dev libboost-fiber-dev libboost-fiber1.62-dev libboost-fiber1.62.0 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.62-dev libboost-graph-parallel1.62.0 libboost-graph1.62-dev libboost-graph1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-locale-dev libboost-locale1.62-dev libboost-locale1.62.0 libboost-log-dev libboost-log1.62-dev libboost-log1.62.0 libboost-math-dev libboost-math1.62-dev libboost-math1.62.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.62-dev libboost-mpi-python1.62.0 libboost-mpi1.62-dev libboost-mpi1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-random-dev libboost-random1.62-dev libboost-random1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization-dev libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-signals-dev libboost-signals1.62-dev libboost-signals1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost-timer-dev libboost-timer1.62-dev libboost-timer1.62.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.62-dev libboost-type-erasure1.62.0 libboost-wave-dev libboost-wave1.62-dev libboost-wave1.62.0 libboost1.62-dev libboost1.62-tools-dev libcroco3 libexpat1 libexpat1-dev libfabric1 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib librdmacm1 libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common po-debconf python python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal readline-common sbuild-build-depends-autodock-vina-dummy 0 upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 138 MB of archives. After this operation, 512 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NqNX99/apt_archive ./ sbuild-build-depends-autodock-vina-dummy 0.invalid.0 [800 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.13-2 [389 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.13-2 [1383 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.16.2-5 [572 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-3 [1342 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.13-2 [1895 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.13-2 [285 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.3-3 [577 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.3-3 [1695 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.3-3 [35.4 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.3-3 [2170 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.3-3 [237 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.3-3 [18.8 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20170125 [86.8 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.3-3 [21.8 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-6 [178 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-tools-dev amd64 1.62.0+dfsg-4+b1 [1202 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libboost-tools-dev amd64 1.62.0.1 [3592 B] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62.0 amd64 1.62.0+dfsg-4+b1 [30.8 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62-dev amd64 1.62.0+dfsg-4+b1 [29.7 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic-dev amd64 1.62.0.1 [3726 B] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4+b1 [32.7 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-4+b1 [36.3 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62-dev amd64 1.62.0+dfsg-4+b1 [36.7 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono-dev amd64 1.62.0.1 [4048 B] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libboost-context1.62.0 amd64 1.62.0+dfsg-4+b1 [31.8 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libboost-context1.62-dev amd64 1.62.0+dfsg-4+b1 [31.1 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libboost-context-dev amd64 1.62.0.1 [3618 B] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-4+b1 [71.8 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libboost-coroutine1.62.0 amd64 1.62.0+dfsg-4+b1 [44.2 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libboost-coroutine1.62-dev amd64 1.62.0+dfsg-4+b1 [44.8 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libboost-coroutine-dev amd64 1.62.0.1 [3690 B] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62.0 amd64 1.62.0+dfsg-4+b1 [43.2 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4+b1 [126 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62-dev amd64 1.62.0+dfsg-4+b1 [163 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62-dev amd64 1.62.0+dfsg-4+b1 [50.4 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time-dev amd64 1.62.0.1 [3418 B] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost-exception1.62-dev amd64 1.62.0+dfsg-4+b1 [29.1 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost-exception-dev amd64 1.62.0.1 [3410 B] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libboost-fiber1.62.0 amd64 1.62.0+dfsg-4+b1 [50.7 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libboost-fiber1.62-dev amd64 1.62.0+dfsg-4+b1 [54.2 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-fiber-dev amd64 1.62.0.1 [3840 B] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4+b1 [63.6 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62-dev amd64 1.62.0+dfsg-4+b1 [34.2 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62-dev amd64 1.62.0+dfsg-4+b1 [73.2 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem-dev amd64 1.62.0.1 [3448 B] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4+b1 [288 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph1.62.0 amd64 1.62.0+dfsg-4+b1 [119 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.62.0 amd64 1.62.0+dfsg-4+b1 [34.8 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.62.0 amd64 1.62.0+dfsg-4+b1 [255 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.62-dev amd64 1.62.0+dfsg-4+b1 [301 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph1.62-dev amd64 1.62.0+dfsg-4+b1 [127 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-dev amd64 1.62.0.1 [3510 B] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-1 [265 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi2 amd64 2.1.1-6 [2062 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi1.62.0 amd64 1.62.0+dfsg-4+b1 [70.9 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-parallel1.62.0 amd64 1.62.0+dfsg-4+b1 [86.4 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-parallel1.62-dev amd64 1.62.0+dfsg-4+b1 [89.1 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-parallel-dev amd64 1.62.0.1 [3546 B] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-6 [16.5 MB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62-dev amd64 1.62.0+dfsg-4+b1 [335 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4+b1 [51.1 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.62-dev amd64 1.62.0+dfsg-4+b1 [57.5 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams-dev amd64 1.62.0.1 [3408 B] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libboost-locale1.62.0 amd64 1.62.0+dfsg-4+b1 [263 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libboost-locale1.62-dev amd64 1.62.0+dfsg-4+b1 [339 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libboost-locale-dev amd64 1.62.0.1 [3752 B] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libboost-log1.62.0 amd64 1.62.0+dfsg-4+b1 [398 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62-dev amd64 1.62.0+dfsg-4+b1 [71.6 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libboost-log1.62-dev amd64 1.62.0+dfsg-4+b1 [545 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libboost-log-dev amd64 1.62.0.1 [3616 B] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libboost-math1.62.0 amd64 1.62.0+dfsg-4+b1 [315 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libboost-math1.62-dev amd64 1.62.0+dfsg-4+b1 [540 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libboost-math-dev amd64 1.62.0.1 [3618 B] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 2.1.1-6 [154 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 1.2.1-2 [107 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-2.1 [46.0 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.5-1 [167 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 2.1.1-6 [1026 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-dev amd64 1.8 [4846 B] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi1.62-dev amd64 1.62.0+dfsg-4+b1 [154 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-dev amd64 1.62.0.1 [3500 B] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.62.0 amd64 1.62.0+dfsg-4+b1 [138 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-bin amd64 2.1.1-6 [193 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-bin amd64 1.8 [4050 B] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-python1.62.0 amd64 1.62.0+dfsg-4+b1 [233 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-python1.62-dev amd64 1.62.0+dfsg-4+b1 [49.0 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 libboost-mpi-python-dev amd64 1.62.0.1 [3538 B] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4+b1 [160 kB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62-dev amd64 1.62.0+dfsg-4+b1 [184 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options-dev amd64 1.62.0.1 [3430 B] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.13-2 [1072 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.1-3 [137 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.13-2 [28.2 MB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.13-2 [20.1 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.13-2 [281 kB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.13-2 [1126 B] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5 amd64 3.5.3-3 [1373 kB] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-dev amd64 3.5.3-3 [37.8 MB] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-dev amd64 3.5.3-3 [18.9 kB] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-dev amd64 3.5.3-3 [413 kB] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 python3-dev amd64 3.5.3-3 [1154 B] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.62-dev amd64 1.62.0+dfsg-4+b1 [166 kB] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python-dev amd64 1.62.0.1 [3802 B] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 libboost-random1.62.0 amd64 1.62.0+dfsg-4+b1 [35.8 kB] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 libboost-random1.62-dev amd64 1.62.0+dfsg-4+b1 [35.1 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 libboost-random-dev amd64 1.62.0.1 [3420 B] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex-dev amd64 1.62.0.1 [3674 B] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization-dev amd64 1.62.0.1 [3642 B] Get:161 http://127.0.0.1:9999/debian unstable/main amd64 libboost-signals1.62.0 amd64 1.62.0+dfsg-4+b1 [54.4 kB] Get:162 http://127.0.0.1:9999/debian unstable/main amd64 libboost-signals1.62-dev amd64 1.62.0+dfsg-4+b1 [58.1 kB] Get:163 http://127.0.0.1:9999/debian unstable/main amd64 libboost-signals-dev amd64 1.62.0.1 [3478 B] Get:164 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system-dev amd64 1.62.0.1 [3554 B] Get:165 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test-dev amd64 1.62.0.1 [3456 B] Get:166 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread-dev amd64 1.62.0.1 [3442 B] Get:167 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.62-dev amd64 1.62.0+dfsg-4+b1 [34.4 kB] Get:168 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer-dev amd64 1.62.0.1 [3534 B] Get:169 http://127.0.0.1:9999/debian unstable/main amd64 libboost-type-erasure1.62.0 amd64 1.62.0+dfsg-4+b1 [42.9 kB] Get:170 http://127.0.0.1:9999/debian unstable/main amd64 libboost-type-erasure1.62-dev amd64 1.62.0+dfsg-4+b1 [42.0 kB] Get:171 http://127.0.0.1:9999/debian unstable/main amd64 libboost-type-erasure-dev amd64 1.62.0.1 [3508 B] Get:172 http://127.0.0.1:9999/debian unstable/main amd64 libboost-wave1.62.0 amd64 1.62.0+dfsg-4+b1 [204 kB] Get:173 http://127.0.0.1:9999/debian unstable/main amd64 libboost-wave1.62-dev amd64 1.62.0+dfsg-4+b1 [252 kB] Get:174 http://127.0.0.1:9999/debian unstable/main amd64 libboost-wave-dev amd64 1.62.0.1 [3448 B] Get:175 http://127.0.0.1:9999/debian unstable/main amd64 libboost-all-dev amd64 1.62.0.1 [3750 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 138 MB in 1s (89.7 MB/s) Selecting previously unselected 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Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libboost-signals1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-context1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2) ... Setting up autopoint (0.19.8.1-2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-program-options-dev:amd64 (1.62.0.1) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libboost-atomic1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-serialization-dev:amd64 (1.62.0.1) ... Setting up libboost-date-time1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-context1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost1.62-tools-dev (1.62.0+dfsg-4+b1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up libboost-atomic-dev:amd64 (1.62.0.1) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libboost-thread1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-random1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libpython3.5-stdlib:amd64 (3.5.3-3) ... Setting up libboost-regex1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up python2.7 (2.7.13-2) ... Setting up libboost-fiber1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up libboost-fiber1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up autoconf (2.69-10) ... Setting up libboost-fiber-dev:amd64 (1.62.0.1) ... Setting up libicu-dev (57.1-6) ... Setting up libboost-date-time-dev:amd64 (1.62.0.1) ... Setting up file (1:5.30-1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-system1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-math1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libpython2.7:amd64 (2.7.13-2) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libboost-signals1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-context-dev:amd64 (1.62.0.1) ... Setting up libpython2.7-dev:amd64 (2.7.13-2) ... Setting up libboost-math-dev:amd64 (1.62.0.1) ... Setting up python2.7-dev (2.7.13-2) ... Setting up python (2.7.13-2) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-random1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-signals-dev:amd64 (1.62.0.1) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.3-3) ... Setting up libpython3-stdlib:amd64 (3.5.3-3) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libpython-dev:amd64 (2.7.13-2) ... Setting up libboost-tools-dev (1.62.0.1) ... Setting up libboost-wave1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-filesystem1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:amd64 (1.11.5-1) ... Setting up libboost-coroutine1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-regex1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-graph1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libpython3.5:amd64 (3.5.3-3) ... Setting up python-dev (2.7.13-2) ... Setting up libboost-system-dev:amd64 (1.62.0.1) ... Setting up libboost-log1.62.0 (1.62.0+dfsg-4+b1) ... Setting up libboost-iostreams1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libboost-filesystem-dev:amd64 (1.62.0.1) ... Setting up libboost-chrono1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libpython3.5-dev:amd64 (3.5.3-3) ... Setting up libboost-timer1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-type-erasure1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-locale1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-random-dev:amd64 (1.62.0.1) ... Setting up libboost-iostreams-dev:amd64 (1.62.0.1) ... Setting up libboost-locale1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-test1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-thread1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-wave1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-coroutine1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-regex-dev:amd64 (1.62.0.1) ... Setting up libboost-coroutine-dev:amd64 (1.62.0.1) ... Setting up python3.5-dev (3.5.3-3) ... Setting up libibverbs-dev (1.2.1-2) ... Setting up libpython3-dev:amd64 (3.5.3-3) ... Setting up libboost-log1.62-dev (1.62.0+dfsg-4+b1) ... Setting up libboost-locale-dev:amd64 (1.62.0.1) ... Setting up libboost-thread-dev:amd64 (1.62.0.1) ... Setting up libfabric1 (1.4.0-1) ... Setting up libboost-chrono-dev:amd64 (1.62.0.1) ... Setting up libboost-type-erasure1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-type-erasure-dev:amd64 (1.62.0.1) ... Setting up libboost-timer-dev:amd64 (1.62.0.1) ... Setting up libboost-test1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-log-dev (1.62.0.1) ... Setting up libboost-wave-dev:amd64 (1.62.0.1) ... Setting up libopenmpi2:amd64 (2.1.1-6) ... Setting up libboost-test-dev:amd64 (1.62.0.1) ... Setting up libboost-mpi1.62.0 (1.62.0+dfsg-4+b1) ... Setting up libopenmpi-dev (2.1.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libboost-graph1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up openmpi-bin (2.1.1-6) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-dev (1.8) ... Setting up libboost-graph-parallel1.62.0 (1.62.0+dfsg-4+b1) ... Setting up libboost-graph-parallel1.62-dev (1.62.0+dfsg-4+b1) ... Setting up libboost-mpi1.62-dev (1.62.0+dfsg-4+b1) ... Setting up mpi-default-bin (1.8) ... Setting up libboost-graph-dev:amd64 (1.62.0.1) ... Setting up libboost-graph-parallel-dev (1.62.0.1) ... Setting up libboost-mpi-dev (1.62.0.1) ... Setting up dh-autoreconf (14) ... Setting up python3 (3.5.3-3) ... Setting up python3-dev (3.5.3-3) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.6.2) ... Setting up libboost-mpi-python1.62.0 (1.62.0+dfsg-4+b1) ... Setting up libboost-python1.62-dev (1.62.0+dfsg-4+b1) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up libboost-python-dev (1.62.0.1) ... Setting up libboost-mpi-python1.62-dev (1.62.0+dfsg-4+b1) ... Setting up libboost-mpi-python-dev (1.62.0.1) ... Setting up libboost-all-dev (1.62.0.1) ... Setting up sbuild-build-depends-autodock-vina-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-4.0_1:4.0.1-1 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 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liblsan0_7.1.0-9 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.2+b1 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnuma-dev_2.0.11-2.1 libnuma1_2.0.11-2.1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libopenmpi-dev_2.1.1-6 libopenmpi2_2.1.1-6 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1+b2 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libpsm-infinipath1_3.3+19.g67c0807.open-3 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libpython3-dev_3.5.3-3 libpython3-stdlib_3.5.3-3 libpython3.5_3.5.3-3 libpython3.5-dev_3.5.3-3 libpython3.5-minimal_3.5.3-3 libpython3.5-stdlib_3.5.3-3 libquadmath0_7.1.0-9 librdmacm1_1.1.0-2 libreadline7_7.0-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-1 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.29.2-1 mpi-default-bin_1.8 mpi-default-dev_1.8 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 ocl-icd-libopencl1_2.2.11-1 openmpi-bin_2.1.1-6 openmpi-common_2.1.1-6 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 po-debconf_1.0.20 python_2.7.13-2 python-dev_2.7.13-2 python-minimal_2.7.13-2 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 python3_3.5.3-3 python3-dev_3.5.3-3 python3-minimal_3.5.3-3 python3.5_3.5.3-3 python3.5-dev_3.5.3-3 python3.5-minimal_3.5.3-3 readline-common_7.0-3 sbuild-build-depends-autodock-vina-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 util-linux_2.29.2-1 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Nov 19 21:54:20 2013 UTC gpgv: using DSA key 60305B31C09FD35A gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./autodock-vina_1.1.2-3.dsc dpkg-source: info: extracting autodock-vina in /<> dpkg-source: info: unpacking autodock-vina_1.1.2.orig.tar.gz dpkg-source: info: unpacking autodock-vina_1.1.2-3.debian.tar.gz dpkg-source: info: applying remove_static.patch dpkg-source: info: applying do_not_link_against_unneeded_libs.patch dpkg-source: info: applying annoying_static_removed_was_in_for_a_reason_questionmark.patch dpkg-source: info: applying fix_boost.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-65bf0b8d-ee0a-44e8-8ee1-32d1208b2ae8 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package autodock-vina dpkg-buildpackage: info: source version 1.1.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build autodock-vina-1.1.2 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f build/linux/release/*.o build/linux/release/vina* make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make BASE=/usr -C build/linux/release CLFAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" LDFLAGS="-Wl,-z,relro --lto" make[2]: Entering directory '/<>/build/linux/release' g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp clang: error: unsupported option '--lto' ../../makefile_common:24: recipe for target 'main.o' failed make[2]: *** [main.o] Error 1 make[2]: Leaving directory '/<>/build/linux/release' debian/rules:17: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T19:13:32Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 772 Build-Time: 0 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 23 Job: autodock-vina_1.1.2-3 Machine Architecture: amd64 Package: autodock-vina Package-Time: 40 Source-Version: 1.1.2-3 Space: 772 Status: attempted Version: 1.1.2-3 -------------------------------------------------------------------------------- Finished at 2017-07-06T19:13:32Z Build needed 00:00:40, 772k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 41.594239929s DC-Time-Estimation: 41.594239929 versus expected 542 (r/m: 12.030650419990273 ; m: 41.594239929)