DC-Build-Header: mapsembler2 2.2.3+dfsg-3 / 2017-07-06 15:58:38 +0000 DC-Task: type:rebuild-binarch-only source:mapsembler2 version:2.2.3+dfsg-3 chroot:unstable esttime: logfile:/tmp/mapsembler2_2.2.3+dfsg-3_unstable_clang4.0.log modes:clang40:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang40 mapsembler2_2.2.3+dfsg-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-35-127.eu-central-1.compute.internal +==============================================================================+ | mapsembler2 2.2.3+dfsg-3 (amd64) Thu, 06 Jul 2017 15:58:38 +0000 | +==============================================================================+ Package: mapsembler2 Version: 2.2.3+dfsg-3 Source Version: 2.2.3+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8090df5c-2184-4912-a475-60c193306aef' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang40 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=4.0 + echo 'Install of clang-4.0' Install of clang-4.0 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3952 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-4.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-4.0-dev libclang1-4.0 libedit2 libjsoncpp1 libllvm4.0 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-4.0-doc libomp-dev Recommended packages: llvm-4.0-dev python libgpm2 The following NEW packages will be installed: clang-4.0 libbsd0 libclang-common-4.0-dev libclang1-4.0 libedit2 libjsoncpp1 libllvm4.0 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 74.4 MB of archives. After this operation, 320 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm4.0 amd64 1:4.0.1-1 [12.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-4.0 amd64 1:4.0.1-1 [6355 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-4.0-dev amd64 1:4.0.1-1 [2495 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-4.0 amd64 1:4.0.1-1 [52.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.4 MB in 0s (93.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9711 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.5-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../1-libncurses5_6.0+20161126-1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm4.0:amd64. Preparing to unpack .../3-libllvm4.0_1%3a4.0.1-1_amd64.deb ... Unpacking libllvm4.0:amd64 (1:4.0.1-1) ... Selecting previously unselected package libclang1-4.0:amd64. Preparing to unpack .../4-libclang1-4.0_1%3a4.0.1-1_amd64.deb ... Unpacking libclang1-4.0:amd64 (1:4.0.1-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-4.0-dev. Preparing to unpack .../8-libclang-common-4.0-dev_1%3a4.0.1-1_amd64.deb ... Unpacking libclang-common-4.0-dev (1:4.0.1-1) ... Selecting previously unselected package clang-4.0. Preparing to unpack .../9-clang-4.0_1%3a4.0.1-1_amd64.deb ... Unpacking clang-4.0 (1:4.0.1-1) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm4.0:amd64 (1:4.0.1-1) ... Setting up libclang1-4.0:amd64 (1:4.0.1-1) ... Setting up libclang-common-4.0-dev (1:4.0.1-1) ... Setting up clang-4.0 (1:4.0.1-1) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-4.0 g++-4.6 + ln -s clang-4.0 gcc-4.6 + ln -s clang-4.0 cpp-4.6 + ln -s clang-4.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-4.0 g++-4.7 + ln -s clang-4.0 gcc-4.7 + ln -s clang-4.0 cpp-4.7 + ln -s clang-4.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-4.0 g++-4.8 + ln -s clang-4.0 gcc-4.8 + ln -s clang-4.0 cpp-4.8 + ln -s clang-4.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-4.0 g++-4.9 + ln -s clang-4.0 gcc-4.9 + ln -s clang-4.0 cpp-4.9 + ln -s clang-4.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-4.0 g++-5 + ln -s clang-4.0 gcc-5 + ln -s clang-4.0 cpp-5 + ln -s clang-4.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-4.0 g++-6 + ln -s clang-4.0 gcc-6 + ln -s clang-4.0 cpp-6 + ln -s clang-4.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-4.0 g++-7 + ln -s clang-4.0 gcc-7 + ln -s clang-4.0 cpp-7 + ln -s clang-4.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/mapsembler2-Hts6HZ + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang40'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mapsembler2' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/ Need to get 1772 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main mapsembler2 2.2.3+dfsg-3 (dsc) [2287 B] Get:2 http://127.0.0.1:9999/debian unstable/main mapsembler2 2.2.3+dfsg-3 (tar) [1761 kB] Get:3 http://127.0.0.1:9999/debian unstable/main mapsembler2 2.2.3+dfsg-3 (diff) [8920 B] Fetched 1772 kB in 0s (20.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mapsembler2-Hts6HZ/mapsembler2-2.2.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/mapsembler2-Hts6HZ' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-7ilEl7/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-7ilEl7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-7ilEl7/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-7ilEl7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-7ilEl7/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-7ilEl7/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-7ilEl7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10206 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), cmake, bc, zlib1g-dev, help2man, libhdf5-dev, libcppunit-dev, libboost-dev Filtered Build-Depends: debhelper (>= 9), cmake, bc, zlib1g-dev, help2man, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'sbuild-build-depends-mapsembler2-dummy' in '/<>/resolver-7ilEl7/apt_archive/sbuild-build-depends-mapsembler2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mapsembler2-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-7ilEl7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-7ilEl7/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-7ilEl7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-7ilEl7/apt_archive ./ Sources [531 B] Get:5 copy:/<>/resolver-7ilEl7/apt_archive ./ Packages [612 B] Fetched 2106 B in 0s (0 B/s) Reading package lists... Reading package lists... Install mapsembler2 build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base hdf5-helpers help2man intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libboost-dev libboost1.62-dev libcppunit-1.13-0v5 libcppunit-dev libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libsz2 libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db po-debconf procps readline-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libcppunit-doc krb5-doc krb5-user libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl readline-doc Recommended packages: curl | wget | lynx-cur ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base hdf5-helpers help2man intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libboost-dev libboost1.62-dev libcppunit-1.13-0v5 libcppunit-dev libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libsz2 libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db po-debconf procps readline-common sbuild-build-depends-mapsembler2-dummy zlib1g-dev 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After this operation, 237 MB of additional disk space will be used. Get:1 copy:/<>/resolver-7ilEl7/apt_archive ./ sbuild-build-depends-mapsembler2-dummy 0.invalid.0 [828 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.7.2-1 [1216 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.12-3 [58.1 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.12-3 [249 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.2-2 [294 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.15-1 [61.7 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.15-1 [119 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.15-1 [311 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.15-1 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3 [68.2 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3 [105 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.44+dfsg-7 [85.2 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-7 [219 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.24.0-1 [81.6 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.17.0-4+b1 [43.0 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2l-2 [1294 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.52.1-5 [291 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libuv1 amd64 1.9.1-3 [84.4 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.7.2-1 [3038 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 bc amd64 1.06.95-9+b3 [105 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 hdf5-helpers amd64 1.10.0-patch1+docs-3 [35.9 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 help2man amd64 1.47.4 [162 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libaec-dev amd64 0.3.2-1 [17.4 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libcppunit-1.13-0v5 amd64 1.13.2-2.1 [112 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libcppunit-dev amd64 1.13.2-2.1 [171 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-1 [265 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3 [1284 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-3 [130 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-dev amd64 1.10.0-patch1+docs-3 [2437 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.1 MB in 0s (90.0 MB/s) Selecting previously unselected package groff-base. (Reading database ... 10206 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../04-cmake-data_3.7.2-1_all.deb ... Unpacking cmake-data (3.7.2-1) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../05-libprocps6_2%3a3.3.12-3_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3) ... Selecting previously unselected package lsb-base. 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Unpacking libjpeg-dev (1:1.5.1-2) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../72-libhdf5-dev_1.10.0-patch1+docs-3_amd64.deb ... Unpacking libhdf5-dev (1.10.0-patch1+docs-3) ... Selecting previously unselected package sbuild-build-depends-mapsembler2-dummy. Preparing to unpack .../73-sbuild-build-depends-mapsembler2-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-mapsembler2-dummy (0.invalid.0) ... Setting up readline-common (7.0-3) ... Setting up libaec0:amd64 (0.3.2-1) ... Setting up libexpat1:amd64 (2.2.1-3) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libnghttp2-14:amd64 (1.24.0-1) ... Setting up libboost1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up libldap-common (2.4.44+dfsg-7) ... Setting up libuv1:amd64 (1.9.1-3) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libpsl5:amd64 (0.17.0-4+b1) ... Setting up libgfortran3:amd64 (6.4.0-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.52.3-1) ... No schema files found: doing nothing. Setting up libcppunit-1.13-0v5:amd64 (1.13.2-2.1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up gettext-base (0.19.8.1-2+b1) ... Setting up cmake-data (3.7.2-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up libprocps6:amd64 (2:3.3.12-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:amd64 (1:5.30-1) ... Setting up lsb-base (9.20161125) ... Setting up procps (2:3.3.12-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libssl1.0.2:amd64 (1.0.2l-2) ... Setting up libssh2-1:amd64 (1.8.0-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up autotools-dev (20161112.1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-7) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up libboost-dev:amd64 (1.62.0.1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up bc (1.06.95-9+b3) ... Setting up hdf5-helpers (1.10.0-patch1+docs-3) ... Setting up autopoint (0.19.8.1-2) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libarchive13:amd64 (3.2.2-2) ... Setting up libcppunit-dev (1.13.2-2.1) ... Setting up libaec-dev:amd64 (0.3.2-1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up libkrb5support0:amd64 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.4) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up libk5crypto3:amd64 (1.15-1) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-3) ... Setting up po-debconf (1.0.20) ... Setting up libhdf5-dev (1.10.0-patch1+docs-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libkrb5-3:amd64 (1.15-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1) ... Setting up libcurl3:amd64 (7.52.1-5) ... Setting up cmake (3.7.2-1) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up debhelper (10.6.2) ... Setting up dh-autoreconf (14) ... Setting up sbuild-build-depends-mapsembler2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 bc_1.06.95-9+b3 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-4.0_1:4.0.1-1 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 eatmydata_105-5 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-2 g++_4:6.3.0-4d1 g++-6_6.4.0-1 gcc_4:6.3.0-4d1 gcc-6_6.4.0-1 gcc-6-base_6.4.0-1 gcc-7-base_7.1.0-9 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.18-8 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hdf5-helpers_1.10.0-patch1+docs-3 help2man_1.47.4 hostname_3.18+b1 init-system-helpers_1.48 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libaec-dev_0.3.2-1 libaec0_0.3.2-1 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan3_6.4.0-1 libatomic1_7.1.0-9 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-1 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4+b1 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-9 libcilkrts5_7.1.0-9 libclang-common-4.0-dev_1:4.0.1-1 libclang1-4.0_1:4.0.1-1 libcomerr2_1.43.4-2 libcppunit-1.13-0v5_1.13.2-2.1 libcppunit-dev_1.13.2-2.1 libcroco3_0.6.12-1 libcurl3_7.52.1-5 libdb5.3_5.3.28-12+b1 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libexpat1_2.2.1-3 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-1 libgcc1_1:7.1.0-9 libgcrypt20_1.7.8-1 libgdbm3_1.8.3-14 libgfortran3_6.4.0-1 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.13-2 libgomp1_7.1.0-9 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15-1 libhdf5-100_1.10.0-patch1+docs-3 libhdf5-cpp-100_1.10.0-patch1+docs-3 libhdf5-dev_1.10.0-patch1+docs-3 libhogweed4_3.3-1+b1 libicu57_57.1-6 libidn2-0_0.16-1+b1 libisl15_0.18-1 libitm1_7.1.0-9 libjpeg-dev_1:1.5.1-2 libjpeg62-turbo_1:1.5.1-2 libjpeg62-turbo-dev_1:1.5.1-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libldap-2.4-2_2.4.44+dfsg-7 libldap-common_2.4.44+dfsg-7 libllvm4.0_1:4.0.1-1 liblocale-gettext-perl_1.07-3+b1 liblsan0_7.1.0-9 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.2+b1 liblzo2-2_2.08-1.2+b2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libnghttp2-14_1.24.0-1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libprocps6_2:3.3.12-3 libpsl5_0.17.0-4+b1 libquadmath0_7.1.0-9 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-1 libss2_1.43.4-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libsz2_0.3.2-1 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 po-debconf_1.0.20 procps_2:3.3.12-3 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mapsembler2-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 util-linux_2.29.2-1 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 9 13:45:53 2016 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.3+dfsg-3.dsc dpkg-source: info: extracting mapsembler2 in /<>/mapsembler2-2.2.3+dfsg dpkg-source: info: unpacking mapsembler2_2.2.3+dfsg.orig.tar.gz dpkg-source: info: unpacking mapsembler2_2.2.3+dfsg-3.debian.tar.xz dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-8090df5c-2184-4912-a475-60c193306aef SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build mapsembler2-2.2.3+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>/mapsembler2-2.2.3+dfsg' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/kissreads' rm -f kissreads/mapsembler2_kissreads rm -f mapsembler2_extremities.1 rm -f mapsembler_extend.1 rm -f kissreads.1 rm -f kissreads_graph.1 dh_clean make[1]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg' debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/mapsembler2-2.2.3+dfsg' mkdir mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake .. && make -- The C compiler identification is Clang 4.0.1 -- The CXX compiler identification is Clang 4.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Failed -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Failed -- gatb-core is here '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.24.1") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -DBOOST_NO_CXX11_RVALUE_REFERENCES=1 -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:201 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build make[2]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[3]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankComposite.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:61:52: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setBranchingCollection (& storage("branching").getCollection ("nodes")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 14 warnings generated. [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 5 warnings generated. [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:66: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); ~~ ^~~~~~~~~~~~~~ %ld 3 warnings generated. [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.hpp:79:78: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here collections::Collection* bloomCollection = & group.getCollection (name); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:189:31: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageTools::saveBloom >' requested here StorageTools::singleton().saveBloom (_storage.getGroup(this->getName()), "bloom", bloom); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.hpp:79:78: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here collections::Collection* bloomCollection = & group.getCollection (name); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:189:31: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageTools::saveBloom >' requested here StorageTools::singleton().saveBloom (_storage.getGroup(this->getName()), "bloom", bloom); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 5 warnings generated. [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.hpp:95:87: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here tools::collections::Collection* bloomArray = & group.getCollection (name); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:271:53: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageTools::loadBloom >' requested here IBloom* bloom = StorageTools::singleton().loadBloom (_groupBloom, "bloom"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.hpp:95:87: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here tools::collections::Collection* bloomArray = & group.getCollection (name); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:271:53: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageTools::loadBloom >' requested here IBloom* bloom = StorageTools::singleton().loadBloom (_groupBloom, "bloom"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:97:24: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection >' requested here return & group.getCollection ("cfp"); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 17 warnings generated. [ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 3 warnings generated. [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 15 warnings generated. [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 15 warnings generated. [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 15 warnings generated. [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::Count>::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::Count>::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection::Count>' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::Count>::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::Count>::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection::Count>' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection::Count>' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:127:42: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection::Count>' requested here setSolidCounts (& (*_storage)("dsk").getCollection ("solid")); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:130:63: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here setHistogram (new Histogram (10000, & (*_storage)("dsk").getCollection("histogram") )); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:278:62: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here Collection& storecutoff = (*_storage)("dsk").getCollection("cutoff") ; ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract >::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5 >::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile >::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile >::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection >' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:198:50: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection >' requested here CollectionNode* result = _factory->createCollection (this, ss.str(), _synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:99:20: note: in instantiation of member function 'gatb::core::tools::storage::impl::Partition >::Partition' requested here return new Partition (storage->getFactory(), parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:538:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createPartition >' requested here case STORAGE_HDF5: return StorageHDF5Factory::createPartition (parent, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:142:41: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createPartition >' requested here Partition* result = _factory->createPartition (this, name, nb); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:486:54: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getPartition >' requested here setPartitions ( & (*_partitionsStorage)().getPartition ("parts", _nb_partitions)); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 15 warnings generated. [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.hpp:33: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.hpp:29: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Command.hpp:29: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp:21: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:24: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. [ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:47: warning: format specifies type 'long long' but the argument has type 'int64_t' (aka 'long') [-Wformat] snprintf (buffer, sizeof(buffer), "%lld", value); ~~~~ ^~~~~ %ld 2 warnings generated. [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp:21: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:32: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:335:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::CollectionAbstract::addProperty' requested here CollectionHDF5 (hid_t fileId, const std::string& filename, system::ISynchronizer* synchro) ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:115:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionHDF5::CollectionHDF5' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionHDF5(storage->getId(), actualName, synchro)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:554:56: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageHDF5Factory::createCollection' requested here case STORAGE_HDF5: return StorageHDF5Factory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:139:31: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here _collection = & group.getCollection (name); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:77: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~ %lu /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:159:5: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile' requested here BagCountCompressedFile (const std::string& filename) : _filename(filename), _file(0),_previous() ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionFile.hpp:109:56: note: in instantiation of member function 'gatb::core::tools::collections::impl::BagCountCompressedFile::BagCountCompressedFile' requested here new collections::impl::BagCountCompressedFile(filename), ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageFile.hpp:201:83: note: in instantiation of member function 'gatb::core::tools::storage::impl::CollectionCountFile::CollectionCountFile' requested here return new CollectionNode (storage->getFactory(), parent, name, new CollectionCountFile(actualName)); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:557:69: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageSortedFactory::createCollection' requested here case STORAGE_COMPRESSED_FILE: return StorageSortedFactory::createCollection (parent, name, synchro); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:153:46: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::StorageFactory::createCollection' requested here CollectionNode* result = _factory->createCollection (this, name, 0); ^ /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:139:31: note: in instantiation of function template specialization 'gatb::core::tools::storage::impl::Group::getCollection' requested here _collection = & group.getCollection (name); ^ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:116: warning: format specifies type 'unsigned long long' but the argument has type 'u_int64_t' (aka 'unsigned long') [-Wformat] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ~~~~ ^~~~~~~~~~~ %lu 5 warnings generated. [ 85%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o [ 85%] Linking CXX static library ../lib/libgatbcore.a make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 85%] Built target gatbcore-static make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/main.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/main.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:46: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/main.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:54: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 3 warnings generated. [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:46: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:54: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 3 warnings generated. [ 92%] Linking CXX executable mapsembler2_extremities make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 92%] Built target mapsembler2_extremities make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbginfo make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 92%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:46: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:54: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 3 warnings generated. [ 96%] Linking CXX executable ../bin/dbginfo make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 96%] Built target dbginfo make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbgh5 make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:46: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: In file included from /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:54: /<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] vasprintf (&buffer, fmt, args); ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~ 3 warnings generated. [100%] Linking CXX executable ../bin/dbgh5 make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [100%] Built target dbgh5 make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [100%] Built target emphf_copyasis make[3]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[2]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' cd mapsembler2_extend && make k=29 make[2]: Entering directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/Bank.cpp:282:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp:713:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp:798:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp:988:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 warnings generated. g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/Bloom.cpp:256:57: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] printf("loading bloom filter from file, nelem %lli \n",nchar); ~~~~ ^~~~~ %lu ../minia/Bloom.cpp:257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(blooma, sizeof(unsigned char), nchar, file_data); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/Terminator.cpp:275:154: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); ~~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu ../minia/Terminator.cpp:303:103: warning: format specifies type 'long long' but the argument has type 'int64_t' (aka 'long') [-Wformat] if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); ~~~~ ^~~~~~~~~~~~~~~~~~ %ld ../minia/Terminator.cpp:303:122: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); ~~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu ../minia/Terminator.cpp:337:78: warning: format specifies type 'long long' but the argument has type 'int64_t' (aka 'long') [-Wformat] fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); ~~~~ ^~~~~~~~~~~~~~~~~~ %ld 4 warnings generated. g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/Set.cpp:290:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/Utils.cpp:121:84: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); ~~~~ ^~~~~~~ %lu ../minia/Utils.cpp:167:17: note: in instantiation of function template specialization 'bloom_create_bloo1' requested here template Bloom *bloom_create_bloo1(BloomCpt *bloom_counter, bool from_dump); ^ ../minia/Utils.cpp:121:92: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); ~~~~ ^~~~~~~ %lu ../minia/Utils.cpp:199:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ftruncate(fileno(F_kmercpt_read), 0); //erase previous file ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:187:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ftruncate(fileno(F_kmercpt_write), 0); //erase previous file ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:434:106: warning: format specifies type 'long long' but the argument has type 'int64_t' (aka 'long') [-Wformat] if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); ~~~~ ^~~~~~ %ld 6 warnings generated. g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/SortingCount.cpp:56:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] getcwd(current_path,sizeof(current_path)); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3 warnings generated. g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] ../minia/Debloom.cpp:29:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ftruncate(fileno(F_debloom_write), 0); //erase previous file ^~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Debloom.cpp:154:95: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); ~~~~ ^~~~~~~~~~~ %lu ../minia/Debloom.cpp:158:45: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr,"\n%lli kmers written\n",cc); ~~~~ ^~ %lu ../minia/Debloom.cpp:191:82: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); ~~~~ ^~~~~~~~~~~ %lu ../minia/Debloom.cpp:195:71: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); ~~~~ ^~~~~~~~~~~~~~~ %lu ../minia/Debloom.cpp:195:87: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); ~~~~ ^~~~~~~~~~~~~~~~~ %lu ../minia/Debloom.cpp:208:79: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); ~~~~ ^~~~~~~~~~~~~~~~~ %lu ../minia/Debloom.cpp:225:87: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); ~~~~ ^~~~~~~~~~~~~~~~~ %lu ../minia/Debloom.cpp:280:118: warning: format specifies type 'long long' but the argument has type 'int64_t' (aka 'long') [-Wformat] if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); ~~~~ ^~~~~~~~~~~~~~~ %ld ../minia/Debloom.cpp:284:87: warning: format specifies type 'long long' but the argument has type 'int64_t' (aka 'long') [-Wformat] fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); ~~~~ ^~~~~~~~~~~~~~~ %ld ../minia/Debloom.cpp:445:83: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); ~~~~ ^~~~~~~~~~~~~~ %lu ../minia/Debloom.cpp:448:115: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ~~~~ ^~~~~~~~~~~~~ %lu ../minia/Debloom.cpp:465:115: warning: format specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ~~~~ ^~~~~~~~~~~~~ %lu 13 warnings generated. g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial clang: warning: -lz: 'linker' input unused [-Wunused-command-line-argument] In file included from Fragment_Bank.cpp:7: In file included from ./Fragment_Bank.h:3: In file included from ./Fragment.h:18: ./GraphOutput.h:51:11: error: redefinition of 'hash' struct hash<__uint128_t> : public unary_function<__uint128_t, size_t> ^~~~~~~~~~~~~~~~~ /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0/../../../../include/c++/6.4.0/bits/functional_hash.h:154:3: note: previous definition is here _Cxx_hashtable_define_trivial_hash(__GLIBCXX_TYPE_INT_N_0 unsigned) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0/../../../../include/c++/6.4.0/bits/functional_hash.h:100:12: note: expanded from macro '_Cxx_hashtable_define_trivial_hash' struct hash<_Tp> : public __hash_base \ ^ 1 error generated. makefile:116: recipe for target 'Fragment_Bank.o' failed make[2]: *** [Fragment_Bank.o] Error 1 make[2]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg/mapsembler2_extend' debian/rules:29: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/mapsembler2-2.2.3+dfsg' debian/rules:23: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T16:01:08Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 159036 Build-Time: 123 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: mapsembler2_2.2.3+dfsg-3 Machine Architecture: amd64 Package: mapsembler2 Package-Time: 150 Source-Version: 2.2.3+dfsg-3 Space: 159036 Status: attempted Version: 2.2.3+dfsg-3 -------------------------------------------------------------------------------- Finished at 2017-07-06T16:01:08Z Build needed 00:02:30, 159036k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 151.632295502s DC-Time-Estimation: 151.632295502 versus expected 1 (r/m: 150.632295502 ; m: 1.0)