DC-Build-Header: autodocksuite 4.2.6-3 / 2017-08-20 18:40:53 +0000 DC-Task: type:rebuild-binarch-only source:autodocksuite version:4.2.6-3 chroot:unstable esttime:147 logfile:/tmp/autodocksuite_4.2.6-3_unstable_clang5.0.log modes:clang50:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang50 autodocksuite_4.2.6-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-36-254.eu-central-1.compute.internal +==============================================================================+ | autodocksuite 4.2.6-3 (amd64) Sun, 20 Aug 2017 18:40:53 +0000 | +==============================================================================+ Package: autodocksuite Version: 4.2.6-3 Source Version: 4.2.6-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-f23d34a3-0e6e-4595-b3a3-e86501877915' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang50 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=5.0 + echo 'Install of clang-5.0' Install of clang-5.0 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5785 kB] Fetched 5785 kB in 1s (3943 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-5.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libasan3 libbsd0 libclang-common-5.0-dev libclang1-5.0 libedit2 libgcc-6-dev libjsoncpp1 libllvm5.0 libncurses5 libobjc-6-dev libobjc4 libstdc++-6-dev Suggested packages: gnustep gnustep-devel clang-5.0-doc libomp-dev libstdc++-6-doc Recommended packages: llvm-5.0-dev python libgpm2 The following NEW packages will be installed: clang-5.0 libasan3 libbsd0 libclang-common-5.0-dev libclang1-5.0 libedit2 libgcc-6-dev libjsoncpp1 libllvm5.0 libncurses5 libobjc-6-dev libobjc4 libstdc++-6-dev 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 88.4 MB of archives. After this operation, 376 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.6-1 [90.3 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20170715-2 [93.8 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm5.0 amd64 1:5.0~+rc2-1 [13.5 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-5.0 amd64 1:5.0~+rc2-1 [6729 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libasan3 amd64 6.4.0-3 [311 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libgcc-6-dev amd64 6.4.0-3 [2296 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libstdc++-6-dev amd64 6.4.0-3 [1421 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.2.0-1 [51.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-3 [197 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-5.0-dev amd64 1:5.0~+rc2-1 [1989 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-5.0 amd64 1:5.0~+rc2-1 [61.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.4 MB in 0s (98.5 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9822 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.6-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../01-libncurses5_6.0+20170715-2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20170715-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm5.0:amd64. Preparing to unpack .../03-libllvm5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libllvm5.0:amd64 (1:5.0~+rc2-1) ... Selecting previously unselected package libclang1-5.0:amd64. Preparing to unpack .../04-libclang1-5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libclang1-5.0:amd64 (1:5.0~+rc2-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../05-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libasan3:amd64. Preparing to unpack .../06-libasan3_6.4.0-3_amd64.deb ... Unpacking libasan3:amd64 (6.4.0-3) ... Selecting previously unselected package libgcc-6-dev:amd64. Preparing to unpack .../07-libgcc-6-dev_6.4.0-3_amd64.deb ... Unpacking libgcc-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libstdc++-6-dev:amd64. Preparing to unpack .../08-libstdc++-6-dev_6.4.0-3_amd64.deb ... Unpacking libstdc++-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_7.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (7.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../10-libobjc-6-dev_6.4.0-3_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libclang-common-5.0-dev. Preparing to unpack .../11-libclang-common-5.0-dev_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libclang-common-5.0-dev (1:5.0~+rc2-1) ... Selecting previously unselected package clang-5.0. Preparing to unpack .../12-clang-5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking clang-5.0 (1:5.0~+rc2-1) ... Setting up libncurses5:amd64 (6.0+20170715-2) ... Setting up libobjc4:amd64 (7.2.0-1) ... Setting up libasan3:amd64 (6.4.0-3) ... Setting up libgcc-6-dev:amd64 (6.4.0-3) ... Setting up libstdc++-6-dev:amd64 (6.4.0-3) ... Setting up libbsd0:amd64 (0.8.6-1) ... Processing triggers for libc-bin (2.24-14) ... Setting up libobjc-6-dev:amd64 (6.4.0-3) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm5.0:amd64 (1:5.0~+rc2-1) ... Setting up libclang1-5.0:amd64 (1:5.0~+rc2-1) ... Setting up libclang-common-5.0-dev (1:5.0~+rc2-1) ... Setting up clang-5.0 (1:5.0~+rc2-1) ... Processing triggers for libc-bin (2.24-14) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-5.0 g++-4.6 + ln -s clang-5.0 gcc-4.6 + ln -s clang-5.0 cpp-4.6 + ln -s clang-5.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-5.0 g++-4.7 + ln -s clang-5.0 gcc-4.7 + ln -s clang-5.0 cpp-4.7 + ln -s clang-5.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-5.0 g++-4.8 + ln -s clang-5.0 gcc-4.8 + ln -s clang-5.0 cpp-4.8 + ln -s clang-5.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-5.0 g++-4.9 + ln -s clang-5.0 gcc-4.9 + ln -s clang-5.0 cpp-4.9 + ln -s clang-5.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-5.0 g++-5 + ln -s clang-5.0 gcc-5 + ln -s clang-5.0 cpp-5 + ln -s clang-5.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-5.0 g++-6 + ln -s clang-5.0 gcc-6 + ln -s clang-5.0 cpp-6 + ln -s clang-5.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-5.0 g++-7 + ln -s clang-5.0 gcc-7 + ln -s clang-5.0 cpp-7 + ln -s clang-5.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + cd - /build/autodocksuite-frBpVl + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang50'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'autodocksuite' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/autodocksuite/trunk/ Need to get 35.5 MB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main autodocksuite 4.2.6-3 (dsc) [2407 B] Get:2 http://127.0.0.1:9999/debian unstable/main autodocksuite 4.2.6-3 (tar) [35.4 MB] Get:3 http://127.0.0.1:9999/debian unstable/main autodocksuite 4.2.6-3 (diff) [11.9 kB] Fetched 35.5 MB in 0s (39.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/autodocksuite-frBpVl/autodocksuite-4.2.6' with '<>' I: NOTICE: Log filtering will replace 'build/autodocksuite-frBpVl' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-36mdlz/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-36mdlz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-36mdlz/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-36mdlz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-36mdlz/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-36mdlz/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-36mdlz/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11331 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), automake, python, autotools-dev Filtered Build-Depends: debhelper (>= 9), automake, python, autotools-dev dpkg-deb: building package 'sbuild-build-depends-autodocksuite-dummy' in '/<>/resolver-36mdlz/apt_archive/sbuild-build-depends-autodocksuite-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-autodocksuite-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-36mdlz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-36mdlz/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-36mdlz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-36mdlz/apt_archive ./ Sources [505 B] Get:5 copy:/<>/resolver-36mdlz/apt_archive ./ Packages [584 B] Fetched 2052 B in 0s (0 B/s) Reading package lists... Reading package lists... Install autodocksuite build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-minimal python2.7 python2.7-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-minimal python2.7 python2.7-minimal readline-common sbuild-build-depends-autodocksuite-dummy 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 25.8 MB of archives. After this operation, 88.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-36mdlz/apt_archive ./ sbuild-build-depends-autodocksuite-dummy 0.invalid.0 [804 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.2-1 [28.3 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.13-4 [392 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.13-4 [1370 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.3-1 [87.5 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.19.3-3 [582 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-4 [1349 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.13-4 [1898 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.13-4 [292 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.31-1 [223 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.31-1 [112 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.31-1 [64.2 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.038-1 [11.1 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.53.4-3 [2796 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.7.2 [975 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.8 MB in 0s (97.2 MB/s) Selecting previously unselected package groff-base. (Reading database ... 11331 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.2-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.13-4_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-4) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.13-4_amd64.deb ... Unpacking python2.7-minimal (2.7.13-4) ... 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Unpacking python (2.7.13-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.31-1_amd64.deb ... Unpacking libmagic-mgc (1:5.31-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.31-1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.31-1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.31-1_amd64.deb ... Unpacking file (1:5.31-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.19.8.1-2+b1_amd64.deb ... Unpacking gettext-base (0.19.8.1-2+b1) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../05-libicu57_57.1-6_amd64.deb ... Unpacking libicu57:amd64 (57.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../06-libxml2_2.9.4+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-3) ... 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Preparing to unpack .../25-sbuild-build-depends-autodocksuite-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-autodocksuite-dummy (0.invalid.0) ... Setting up readline-common (7.0-3) ... Setting up libexpat1:amd64 (2.2.3-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.53.4-3) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-2+b1) ... Setting up libpipeline1:amd64 (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3) ... Setting up libmagic-mgc (1:5.31-1) ... Setting up libmagic1:amd64 (1:5.31-1) ... Setting up libcroco3:amd64 (0.6.12-1) ... Processing triggers for libc-bin (2.24-14) ... Setting up autotools-dev (20161112.1) ... Setting up libssl1.1:amd64 (1.1.0f-4) ... Setting up libsqlite3-0:amd64 (3.19.3-3) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:amd64 (2.7.13-4) ... Setting up autopoint (0.19.8.1-2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up python2.7 (2.7.13-4) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.31-1) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.13-2) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up debhelper (10.7.2) ... Setting up sbuild-build-depends-autodocksuite-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.29-4 dpkg-dev_1.18.24 g++-7_7.2.0-1 gcc-7_7.2.0-1 libc6-dev_2.24-14 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 linux-libc-dev_4.12.6-1 Package versions: adduser_3.116 apt_1.5~beta2 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-4 build-essential_12.3 bzip2_1.0.6-8.1 clang-5.0_1:5.0~+rc2-1 coreutils_8.26-3 cpp_4:7.1.0-2 cpp-7_7.2.0-1 dash_0.5.8-2.5 debconf_1.5.63 debfoster_2.7-2.1+b1 debhelper_10.7.2 debian-archive-keyring_2017.5 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 eatmydata_105-5 fakeroot_1.22-1 fdisk_2.29.2-4 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.2.0-1 gcc_4:7.1.0-2 gcc-6-base_6.4.0-3 gcc-7_7.2.0-1 gcc-7-base_7.2.0-1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.49 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta2 libarchive-zip-perl_1.59-1 libasan3_6.4.0-3 libasan4_7.2.0-1 libatomic1_7.2.0-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b2 libblkid1_2.29.2-4 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3+b1 libcc1-0_7.2.0-1 libcilkrts5_7.2.0-1 libclang-common-5.0-dev_1:5.0~+rc2-1 libclang1-5.0_1:5.0~+rc2-1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libdb5.3_5.3.28-13 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libexpat1_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-4 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-3 libgcc-7-dev_7.2.0-1 libgcc1_1:7.2.0-1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-3 libgomp1_7.2.0-1 libgpg-error0_1.27-3 libhogweed4_3.3-1+b1 libicu57_57.1-6 libidn2-0_2.0.2-3 libisl15_0.18-1 libitm1_7.2.0-1 libjsoncpp1_1.7.4-3 libllvm5.0_1:5.0~+rc2-1 liblsan0_7.2.0-1 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-4 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.2.0-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1+b1 libobjc-6-dev_6.4.0-3 libobjc4_7.2.0-1 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-4 libpython2.7-stdlib_2.7.13-4 libquadmath0_7.2.0-1 libreadline7_7.0-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-4 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssl1.1_1.1.0f-4 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libtsan0_7.2.0-1 libubsan0_7.2.0-1 libudev1_234-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-4 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.12.6-1 login_1:4.4-4.1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.29.2-4 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.26_5.26.0-5 po-debconf_1.0.20 python_2.7.13-2 python-minimal_2.7.13-2 python2.7_2.7.13-4 python2.7-minimal_2.7.13-4 readline-common_7.0-3 sbuild-build-depends-autodocksuite-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 util-linux_2.29.2-4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 19 20:18:34 2015 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./autodocksuite_4.2.6-3.dsc dpkg-source: info: extracting autodocksuite in /<> dpkg-source: info: unpacking autodocksuite_4.2.6.orig.tar.gz dpkg-source: info: unpacking autodocksuite_4.2.6-3.debian.tar.xz dpkg-source: info: applying create_fake_autoreconf_files.patch dpkg-source: info: applying csh2bash.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-f23d34a3-0e6e-4595-b3a3-e86501877915 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package autodocksuite dpkg-buildpackage: info: source version 4.2.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build autodocksuite-4.2.6 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autotools_dev debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean --sourcedirectory=autodock dh_auto_clean --sourcedirectory=autogrid rm -rf autodock/usr autogrid/usr rm -rf autodock/compile autogrid/compile rm -rf autogrid/mingw_* autogrid/parse_param_line.* autogrid/printdate.* autogrid/printhms.* autogrid/read_parameter_library* autogrid/stop.* autogrid/timesys* if [ -d debian/autodock_save ] ; then mv debian/autodock_save/* autodock; rmdir debian/autodock_save ; fi if [ -d debian/autogrid_save ] ; then mv debian/autogrid_save/* autogrid; rmdir debian/autogrid_save ; fi # remove test results rm -rf autodock/Tests/popfile autodock/Tests/test_1pgp*.dlg rm -rf autodock_testresults rm -rf autogrid/Tests/hsg1_sm.*.map autogrid/Tests/hsg1_sm.glg autogrid/Tests/hsg1_sm.maps* autogrid/Tests/test_x1* autogrid/Tests/x1hpv.*.map autogrid/Tests/x1hpv.maps.* rm -rf autogrid_testresults find . -name "*.pyc" -delete make[1]: Leaving directory '/<>' dh_autotools-dev_restoreconfig dh_clean debian/rules build-arch dh build-arch --with autotools_dev dh_update_autotools_config -a dh_autotools-dev_updateconfig -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' mkdir -p debian/autodock_save cd autodock && cp -a Makefile.in aclocal.m4 config.guess config.sub configure ../debian/autodock_save && autoreconf -i configure.ac:36: installing './compile' dh_auto_configure --sourcedirectory=autodock ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /<>/autodock/missing: Unknown '--is-lightweight' option Try '/<>/autodock/missing --help' for more information configure: WARNING: 'missing' script is too old or missing checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... no configure: error: in `/<>/autodock': configure: error: C++ compiler cannot create executables See `config.log' for more details tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by autodock configure 4.2.6, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking ## --------- ## ## Platform. ## ## --------- ## hostname = ip-172-31-36-254 uname -m = x86_64 uname -r = 4.9.0-2-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.18-1 (2017-03-30) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2375: checking for a BSD-compatible install configure:2443: result: /usr/bin/install -c configure:2454: checking whether build environment is sane configure:2509: result: yes configure:2547: WARNING: 'missing' script is too old or missing configure:2660: checking for a thread-safe mkdir -p configure:2699: result: /bin/mkdir -p configure:2706: checking for gawk configure:2736: result: no configure:2706: checking for mawk configure:2722: found /usr/bin/mawk configure:2733: result: mawk configure:2744: checking whether make sets $(MAKE) configure:2766: result: yes configure:2795: checking whether make supports nested variables configure:2812: result: yes configure:2947: checking for gawk configure:2974: result: mawk configure:3046: checking for g++ configure:3062: found /usr/bin/g++ configure:3073: result: g++ configure:3100: checking for C++ compiler version configure:3109: g++ --version >&5 clang version 5.0.0-+rc2-1 (tags/RELEASE_500/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:3120: $? = 0 configure:3109: g++ -v >&5 clang version 5.0.0-+rc2-1 (tags/RELEASE_500/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.2.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.4.0 ... rest of stderr output deleted ... configure:3120: $? = 0 configure:3109: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3120: $? = 1 configure:3109: g++ -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:3120: $? = 1 configure:3140: checking whether the C++ compiler works configure:3162: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -flto conftest.cpp >&5 /usr/bin/ld: /usr/lib/llvm-5.0/bin/../lib/LLVMgold.so: error loading plugin: /usr/lib/llvm-5.0/bin/../lib/LLVMgold.so: cannot open shared object file: No such file or directory clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:3166: $? = 1 configure:3204: result: no configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "autodock" | #define PACKAGE_TARNAME "autodock" | #define PACKAGE_VERSION "4.2.6" | #define PACKAGE_STRING "autodock 4.2.6" | #define PACKAGE_BUGREPORT "autodock@scripps.edu" | #define PACKAGE_URL "" | #define PACKAGE "autodock" | #define VERSION "4.2.6" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:3209: error: in `/<>/autodock': configure:3211: error: C++ compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,--as-needed -flto' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=mawk ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_make_make_set=yes am_cv_make_support_nested_variables=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='aclocal-1.15' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AUTOCONF='autoconf' AUTOHEADER='autoheader' AUTOMAKE='automake-1.15' AWK='mawk' CC='' CCDEPMODE='' CFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CPP='' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' CXX='g++' CXXDEPMODE='' CXXFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto' CYGPATH_W='echo' DEFS='' DEPDIR='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' GREP='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='-Wl,-z,relro -Wl,--as-needed -flto' LIBOBJS='' LIBS='' LTLIBOBJS='' MAKEINFO='makeinfo' MKDIR_P='/bin/mkdir -p' OBJEXT='' OPENMP_CXXFLAGS='' PACKAGE='autodock' PACKAGE_BUGREPORT='autodock@scripps.edu' PACKAGE_NAME='autodock' PACKAGE_STRING='autodock 4.2.6' PACKAGE_TARNAME='autodock' PACKAGE_URL='' PACKAGE_VERSION='4.2.6' PATH_SEPARATOR=':' RANLIB='' SET_MAKE='' SHELL='/bin/bash' STRIP='' VERSION='4.2.6' WANT_BIGSTACK_FALSE='' WANT_BIGSTACK_TRUE='' WANT_OMP_FALSE='' WANT_OMP_TRUE='' ac_ct_CC='' ac_ct_CXX='g++' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/autodock/install-sh' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${prefix}/lib/x86_64-linux-gnu' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "autodock" #define PACKAGE_TARNAME "autodock" #define PACKAGE_VERSION "4.2.6" #define PACKAGE_STRING "autodock 4.2.6" #define PACKAGE_BUGREPORT "autodock@scripps.edu" #define PACKAGE_URL "" #define PACKAGE "autodock" #define VERSION "4.2.6" configure: exit 77 Died at /usr/share/perl5/Debian/Debhelper/Buildsystem/autoconf.pm line 78. debian/rules:18: recipe for target 'override_dh_auto_configure' failed make[1]: *** [override_dh_auto_configure] Error 2 make[1]: Leaving directory '/<>' debian/rules:15: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-20T18:41:28Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 97992 Build-Time: 5 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 7 Job: autodocksuite_4.2.6-3 Machine Architecture: amd64 Package: autodocksuite Package-Time: 35 Source-Version: 4.2.6-3 Space: 97992 Status: attempted Version: 4.2.6-3 -------------------------------------------------------------------------------- Finished at 2017-08-20T18:41:28Z Build needed 00:00:35, 97992k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 37.064719513s DC-Time-Estimation: 37.064719513 versus expected 147 (r/m: 2.9660356784419086 ; m: 37.064719513)