DC-Build-Header: lammps 0~20161109.git9806da6-7 / 2017-08-20 18:20:32 +0000 DC-Task: type:rebuild-binarch-only source:lammps version:0~20161109.git9806da6-7 chroot:unstable esttime:298 logfile:/tmp/lammps_0~20161109.git9806da6-7_unstable_clang5.0.log modes:clang50:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang50 lammps_0~20161109.git9806da6-7' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-37-179.eu-central-1.compute.internal +==============================================================================+ | lammps 0~20161109.git9806da6-7 (amd64) Sun, 20 Aug 2017 18:20:32 +0000 | +==============================================================================+ Package: lammps Version: 0~20161109.git9806da6-7 Source Version: 0~20161109.git9806da6-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-30b91f8e-7cb6-4bc8-9533-dcce5edc8b20' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang50 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=5.0 + echo 'Install of clang-5.0' Install of clang-5.0 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5785 kB] Fetched 5785 kB in 1s (3919 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-5.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libasan3 libbsd0 libclang-common-5.0-dev libclang1-5.0 libedit2 libgcc-6-dev libjsoncpp1 libllvm5.0 libncurses5 libobjc-6-dev libobjc4 libstdc++-6-dev Suggested packages: gnustep gnustep-devel clang-5.0-doc libomp-dev libstdc++-6-doc Recommended packages: llvm-5.0-dev python libgpm2 The following NEW packages will be installed: clang-5.0 libasan3 libbsd0 libclang-common-5.0-dev libclang1-5.0 libedit2 libgcc-6-dev libjsoncpp1 libllvm5.0 libncurses5 libobjc-6-dev libobjc4 libstdc++-6-dev 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 88.4 MB of archives. After this operation, 376 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.6-1 [90.3 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20170715-2 [93.8 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm5.0 amd64 1:5.0~+rc2-1 [13.5 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-5.0 amd64 1:5.0~+rc2-1 [6729 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libasan3 amd64 6.4.0-3 [311 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libgcc-6-dev amd64 6.4.0-3 [2296 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libstdc++-6-dev amd64 6.4.0-3 [1421 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.2.0-1 [51.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-3 [197 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-5.0-dev amd64 1:5.0~+rc2-1 [1989 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-5.0 amd64 1:5.0~+rc2-1 [61.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.4 MB in 0s (96.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9822 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.6-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../01-libncurses5_6.0+20170715-2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20170715-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm5.0:amd64. Preparing to unpack .../03-libllvm5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libllvm5.0:amd64 (1:5.0~+rc2-1) ... Selecting previously unselected package libclang1-5.0:amd64. Preparing to unpack .../04-libclang1-5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libclang1-5.0:amd64 (1:5.0~+rc2-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../05-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libasan3:amd64. Preparing to unpack .../06-libasan3_6.4.0-3_amd64.deb ... Unpacking libasan3:amd64 (6.4.0-3) ... Selecting previously unselected package libgcc-6-dev:amd64. Preparing to unpack .../07-libgcc-6-dev_6.4.0-3_amd64.deb ... Unpacking libgcc-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libstdc++-6-dev:amd64. Preparing to unpack .../08-libstdc++-6-dev_6.4.0-3_amd64.deb ... Unpacking libstdc++-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_7.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (7.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../10-libobjc-6-dev_6.4.0-3_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libclang-common-5.0-dev. Preparing to unpack .../11-libclang-common-5.0-dev_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libclang-common-5.0-dev (1:5.0~+rc2-1) ... Selecting previously unselected package clang-5.0. Preparing to unpack .../12-clang-5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking clang-5.0 (1:5.0~+rc2-1) ... Setting up libncurses5:amd64 (6.0+20170715-2) ... Setting up libobjc4:amd64 (7.2.0-1) ... Setting up libasan3:amd64 (6.4.0-3) ... Setting up libgcc-6-dev:amd64 (6.4.0-3) ... Setting up libstdc++-6-dev:amd64 (6.4.0-3) ... Setting up libbsd0:amd64 (0.8.6-1) ... Processing triggers for libc-bin (2.24-14) ... Setting up libobjc-6-dev:amd64 (6.4.0-3) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm5.0:amd64 (1:5.0~+rc2-1) ... Setting up libclang1-5.0:amd64 (1:5.0~+rc2-1) ... Setting up libclang-common-5.0-dev (1:5.0~+rc2-1) ... Setting up clang-5.0 (1:5.0~+rc2-1) ... Processing triggers for libc-bin (2.24-14) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-5.0 g++-4.6 + ln -s clang-5.0 gcc-4.6 + ln -s clang-5.0 cpp-4.6 + ln -s clang-5.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-5.0 g++-4.7 + ln -s clang-5.0 gcc-4.7 + ln -s clang-5.0 cpp-4.7 + ln -s clang-5.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-5.0 g++-4.8 + ln -s clang-5.0 gcc-4.8 + ln -s clang-5.0 cpp-4.8 + ln -s clang-5.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-5.0 g++-4.9 + ln -s clang-5.0 gcc-4.9 + ln -s clang-5.0 cpp-4.9 + ln -s clang-5.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-5.0 g++-5 + ln -s clang-5.0 gcc-5 + ln -s clang-5.0 cpp-5 + ln -s clang-5.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-5.0 g++-6 + ln -s clang-5.0 gcc-6 + ln -s clang-5.0 cpp-6 + ln -s clang-5.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-5.0 g++-7 + ln -s clang-5.0 gcc-7 + ln -s clang-5.0 cpp-7 + ln -s clang-5.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + cd - /build/lammps-t8F5mT + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang50'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lammps' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-science/packages/lammps.git Please use: git clone https://anonscm.debian.org/git/debian-science/packages/lammps.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 55.9 MB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main lammps 0~20161109.git9806da6-7 (dsc) [2241 B] Get:2 http://127.0.0.1:9999/debian unstable/main lammps 0~20161109.git9806da6-7 (tar) [55.8 MB] Get:3 http://127.0.0.1:9999/debian unstable/main lammps 0~20161109.git9806da6-7 (diff) [13.2 kB] Fetched 55.9 MB in 4s (13.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lammps-t8F5mT/lammps-0~20161109.git9806da6' with '<>' I: NOTICE: Log filtering will replace 'build/lammps-t8F5mT' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-07FOcC/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-07FOcC/apt_archive ./ InRelease Get:2 copy:/<>/resolver-07FOcC/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-07FOcC/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-07FOcC/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-07FOcC/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-07FOcC/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11331 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), libeigen3-dev, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev Filtered Build-Depends: debhelper (>= 9), libeigen3-dev, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<>/resolver-07FOcC/apt_archive/sbuild-build-depends-lammps-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-lammps-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-07FOcC/apt_archive ./ InRelease Get:2 copy:/<>/resolver-07FOcC/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-07FOcC/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-07FOcC/apt_archive ./ Sources [519 B] Get:5 copy:/<>/resolver-07FOcC/apt_archive ./ Packages [602 B] Fetched 2084 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lammps build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libeigen3-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 librdmacm1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common pkg-config po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libeigen3-doc libmrpt-dev libfftw3-doc libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser opencl-icd gfortran libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libeigen3-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 librdmacm1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common pkg-config po-debconf sbuild-build-depends-lammps-dummy 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After this operation, 118 MB of additional disk space will be used. Get:1 copy:/<>/resolver-07FOcC/apt_archive ./ sbuild-build-depends-lammps-dummy 0.invalid.0 [820 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.2-1 [28.3 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.31-1 [223 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.31-1 [112 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.31-1 [64.2 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.038-1 [11.1 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.53.4-3 [2796 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.7.2 [975 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libeigen3-dev all 3.3.4-2 [842 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-double3 amd64 3.3.6p2-1 [732 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-long3 amd64 3.3.6p2-1 [315 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.6p2-1 [556 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-single3 amd64 3.3.6p2-1 [764 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-bin amd64 3.3.6p2-1 [50.1 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-dev amd64 3.3.6p2-1 [2123 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-3 [266 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-2.1 [46.0 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.5-1 [167 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 1.2.1-2 [107 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi2 amd64 2.1.1-6 [2062 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 2.1.1-6 [154 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 2.1.1-6 [1026 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-bin amd64 2.1.1-6 [193 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-bin amd64 1.8 [4050 B] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-dev amd64 1.8 [4846 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.8 MB in 0s (96.7 MB/s) Selecting previously unselected package groff-base. 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Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libfftw3-long3:amd64 (3.3.6p2-1) ... Setting up autopoint (0.19.8.1-2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libfftw3-bin (3.3.6p2-1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libeigen3-dev (3.3.4-2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.31-1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up libfftw3-dev:amd64 (3.3.6p2-1) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up libibverbs1 (1.2.1-2) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:amd64 (1.11.5-1) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libibverbs-dev (1.2.1-2) ... Setting up libfabric1 (1.4.0-1) ... Setting up libopenmpi2:amd64 (2.1.1-6) ... Setting up libopenmpi-dev (2.1.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up openmpi-bin (2.1.1-6) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-dev (1.8) ... Setting up mpi-default-bin (1.8) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up debhelper (10.7.2) ... Setting up dh-autoreconf (14) ... Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.29-4 dpkg-dev_1.18.24 g++-7_7.2.0-1 gcc-7_7.2.0-1 libc6-dev_2.24-14 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 linux-libc-dev_4.12.6-1 Package versions: adduser_3.116 apt_1.5~beta2 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-4 build-essential_12.3 bzip2_1.0.6-8.1 clang-5.0_1:5.0~+rc2-1 coreutils_8.26-3 cpp_4:7.1.0-2 cpp-7_7.2.0-1 dash_0.5.8-2.5 debconf_1.5.63 debfoster_2.7-2.1+b1 debhelper_10.7.2 debian-archive-keyring_2017.5 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 eatmydata_105-5 fakeroot_1.22-1 fdisk_2.29.2-4 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.2.0-1 gcc_4:7.1.0-2 gcc-6-base_6.4.0-3 gcc-7_7.2.0-1 gcc-7-base_7.2.0-1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.49 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta2 libarchive-zip-perl_1.59-1 libasan3_6.4.0-3 libasan4_7.2.0-1 libatomic1_7.2.0-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b2 libblkid1_2.29.2-4 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3+b1 libcc1-0_7.2.0-1 libcilkrts5_7.2.0-1 libclang-common-5.0-dev_1:5.0~+rc2-1 libclang1-5.0_1:5.0~+rc2-1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libdb5.3_5.3.28-13 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libeigen3-dev_3.3.4-2 libfabric1_1.4.0-1 libfakeroot_1.22-1 libfdisk1_2.29.2-4 libffi6_3.2.1-6 libfftw3-bin_3.3.6p2-1 libfftw3-dev_3.3.6p2-1 libfftw3-double3_3.3.6p2-1 libfftw3-long3_3.3.6p2-1 libfftw3-quad3_3.3.6p2-1 libfftw3-single3_3.3.6p2-1 libfile-stripnondeterminism-perl_0.038-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-3 libgcc-7-dev_7.2.0-1 libgcc1_1:7.2.0-1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libgfortran3_6.4.0-3 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-3 libgomp1_7.2.0-1 libgpg-error0_1.27-3 libhogweed4_3.3-1+b1 libhwloc-dev_1.11.5-1 libhwloc-plugins_1.11.5-1 libhwloc5_1.11.5-1 libibverbs-dev_1.2.1-2 libibverbs1_1.2.1-2 libicu57_57.1-6 libidn2-0_2.0.2-3 libisl15_0.18-1 libitm1_7.2.0-1 libjpeg-dev_1:1.5.1-2 libjpeg62-turbo_1:1.5.1-2 libjpeg62-turbo-dev_1:1.5.1-2 libjsoncpp1_1.7.4-3 libllvm5.0_1:5.0~+rc2-1 liblsan0_7.2.0-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-4 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.2.0-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1+b1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnuma-dev_2.0.11-2.1 libnuma1_2.0.11-2.1 libobjc-6-dev_6.4.0-3 libobjc4_7.2.0-1 libopenmpi-dev_2.1.1-6 libopenmpi2_2.1.1-6 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1+b2 libpcre3_2:8.39-4 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libpsm-infinipath1_3.3+19.g67c0807.open-3 libquadmath0_7.2.0-1 librdmacm1_1.1.0-2 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-4 libss2_1.43.5-1 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libtsan0_7.2.0-1 libubsan0_7.2.0-1 libudev1_234-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-4 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.12.6-1 login_1:4.4-4.1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-4 mpi-default-bin_1.8 mpi-default-dev_1.8 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 ocl-icd-libopencl1_2.2.11-1 openmpi-bin_2.1.1-6 openmpi-common_2.1.1-6 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.26_5.26.0-5 pkg-config_0.29-4+b1 po-debconf_1.0.20 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lammps-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 util-linux_2.29.2-4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 19 18:07:42 2017 UTC gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lammps_0~20161109.git9806da6-7.dsc dpkg-source: info: extracting lammps in /<> dpkg-source: info: unpacking lammps_0~20161109.git9806da6.orig.tar.xz dpkg-source: info: unpacking lammps_0~20161109.git9806da6-7.debian.tar.xz dpkg-source: info: applying 10_set_configure_flags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-30b91f8e-7cb6-4bc8-9533-dcce5edc8b20 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20161109.git9806da6-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Anton Gladky dpkg-source --before-build lammps-0~20161109.git9806da6 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cd src; make clean-all make[2]: Entering directory '/<>/src' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf Obj_* make[2]: Leaving directory '/<>/src' dh_clean make[1]: Leaving directory '/<>' dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_update_autotools_config -a -O--parallel dh_auto_configure -a -O--parallel debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' cd src; /usr/bin/make yes-all; /usr/bin/make no-lib; /usr/bin/make mpi make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package asphere make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package body make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package class2 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package colloid make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package compress make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' 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src/pair_born_coul_long_gpu.cpp updating src/pair_born_coul_long_gpu.h updating src/pair_buck_coul_long_gpu.cpp updating src/pair_buck_coul_long_gpu.h updating src/pair_coul_long_gpu.cpp updating src/pair_coul_long_gpu.h updating src/pair_lj_charmm_coul_long_gpu.cpp updating src/pair_lj_charmm_coul_long_gpu.h updating src/pair_lj_cut_coul_long_gpu.cpp updating src/pair_lj_cut_coul_long_gpu.h updating src/pair_lj_cut_coul_msm_gpu.cpp updating src/pair_lj_cut_coul_msm_gpu.h updating src/pppm_gpu.cpp updating src/pppm_gpu.h updating package KOKKOS updating src/gridcomm_kokkos.cpp updating src/gridcomm_kokkos.h updating src/pair_buck_coul_long_kokkos.cpp updating src/pair_buck_coul_long_kokkos.h updating src/pair_coul_long_kokkos.cpp updating src/pair_coul_long_kokkos.h updating src/pair_lj_charmm_coul_long_kokkos.cpp updating src/pair_lj_charmm_coul_long_kokkos.h updating src/pair_lj_cut_coul_long_kokkos.cpp updating src/pair_lj_cut_coul_long_kokkos.h updating src/pppm_kokkos.cpp updating src/pppm_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package manybody updating package GPU updating src/pair_eam_alloy_gpu.cpp updating src/pair_eam_alloy_gpu.h updating src/pair_eam_fs_gpu.cpp updating src/pair_eam_fs_gpu.h updating src/pair_eam_gpu.cpp updating src/pair_eam_gpu.h updating src/pair_sw_gpu.cpp updating src/pair_sw_gpu.h updating src/pair_tersoff_gpu.cpp updating src/pair_tersoff_gpu.h updating src/pair_tersoff_mod_gpu.cpp updating src/pair_tersoff_mod_gpu.h updating src/pair_tersoff_zbl_gpu.cpp updating src/pair_tersoff_zbl_gpu.h updating package KOKKOS updating src/pair_eam_kokkos.cpp updating src/pair_eam_kokkos.h updating src/pair_eam_alloy_kokkos.cpp updating src/pair_eam_alloy_kokkos.h updating src/pair_eam_fs_kokkos.cpp updating src/pair_eam_fs_kokkos.h updating src/pair_sw_kokkos.cpp updating src/pair_sw_kokkos.h updating src/pair_tersoff_kokkos.cpp updating src/pair_tersoff_kokkos.h updating src/pair_tersoff_mod_kokkos.cpp updating src/pair_tersoff_mod_kokkos.h updating src/pair_tersoff_zbl_kokkos.cpp updating src/pair_tersoff_zbl_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package mc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package meam make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package misc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package molecule updating package GPU updating package KOKKOS updating src/angle_charmm_kokkos.cpp updating src/angle_charmm_kokkos.h updating src/angle_harmonic_kokkos.cpp updating src/angle_harmonic_kokkos.h updating src/atom_vec_angle_kokkos.cpp updating src/atom_vec_angle_kokkos.h updating src/atom_vec_bond_kokkos.cpp updating src/atom_vec_bond_kokkos.h updating src/atom_vec_full_kokkos.cpp updating src/atom_vec_full_kokkos.h updating src/atom_vec_molecular_kokkos.cpp updating src/atom_vec_molecular_kokkos.h updating src/bond_fene_kokkos.cpp updating src/bond_fene_kokkos.h updating src/bond_harmonic_kokkos.cpp updating src/bond_harmonic_kokkos.h updating src/dihedral_charmm_kokkos.cpp updating src/dihedral_charmm_kokkos.h updating src/dihedral_opls_kokkos.cpp updating src/dihedral_opls_kokkos.h updating src/improper_harmonic_kokkos.cpp updating src/improper_harmonic_kokkos.h updating src/pair_lj_charmm_coul_charmm_implicit_kokkos.cpp updating src/pair_lj_charmm_coul_charmm_implicit_kokkos.h updating src/pair_lj_charmm_coul_charmm_kokkos.cpp updating src/pair_lj_charmm_coul_charmm_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package mpiio make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package opt make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package peri make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package poems make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package python make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package qeq make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package reax make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package replica make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package rigid make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package shock make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package snap make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package srd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package voronoi make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-atc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-awpmd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-cg-cmm updating package GPU updating src/pair_lj_sdk_coul_long_gpu.cpp updating src/pair_lj_sdk_coul_long_gpu.h updating src/pair_lj_sdk_gpu.cpp updating src/pair_lj_sdk_gpu.h updating package KOKKOS updating src/pair_lj_sdk_kokkos.cpp updating src/pair_lj_sdk_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-colvars make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-diffraction make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-dpd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-drude make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-eff make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-fep make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-h5md make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-intel make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-lb make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-manifold make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-mgpt make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-misc updating package GPU updating src/pair_lj_sf_dipole_sf_gpu.cpp updating src/pair_lj_sf_dipole_sf_gpu.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-molfile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-nc-dump make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-omp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-phonon make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-qmmm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-qtb make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-quip make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-reaxc updating package KOKKOS updating src/fix_qeq_reax_kokkos.cpp updating src/fix_qeq_reax_kokkos.h updating src/fix_reaxc_bonds_kokkos.cpp updating src/fix_reaxc_bonds_kokkos.h updating src/fix_reaxc_species_kokkos.cpp updating src/fix_reaxc_species_kokkos.h updating src/pair_reax_c_kokkos.cpp updating src/pair_reax_c_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-smd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-smtbq make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-sph make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-tally make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-vtk make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package compress make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package gpu make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package kim make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package kokkos make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package meam make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package mpiio make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package poems make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package python make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package reax make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package voronoi make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-atc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-awpmd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-colvars make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-h5md make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-lb make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-molfile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-nc-dump make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-qmmm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-quip make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-smd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-vtk make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/Obj_mpi' cc -O -o fastdep.exe ../DEPEND/fastdep.c make[3]: Leaving directory '/<>/src/Obj_mpi' make[3]: Entering directory '/<>/src/Obj_mpi' mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_slater.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse_smooth_linear_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_drude.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_harmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_intel.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_asphere_noforce.cpp In file included from ../pair_morse_smooth_linear_omp.cpp:17: In file included from ../pair_morse_smooth_linear_omp.h:24: In file included from ../thr_omp.h:24: ../thr_data.h:22:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DLMP_USER_INTEL -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ackland_atom.cpp Makefile:104: recipe for target 'pair_morse_smooth_linear_omp.o' failed make[3]: *** [pair_morse_smooth_linear_omp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... In file included from ../pair_lj_cut_intel.cpp:16: In file included from ../pair_lj_cut_intel.h:28: In file included from ../fix_intel.h:28: ../intel_buffers.h:22:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. Makefile:104: recipe for target 'pair_lj_cut_intel.o' failed make[3]: *** [pair_lj_cut_intel.o] Error 1 make[3]: *** wait: No child processes. Stop. Makefile:132: recipe for target 'mpi' failed make[2]: *** [mpi] Error 2 make[2]: Leaving directory '/<>/src' debian/rules:20: recipe for target 'override_dh_auto_build-arch' failed make[1]: *** [override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/<>' debian/rules:13: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-20T18:21:24Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 265604 Build-Time: 13 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 8 Job: lammps_0~20161109.git9806da6-7 Machine Architecture: amd64 Package: lammps Package-Time: 52 Source-Version: 0~20161109.git9806da6-7 Space: 265604 Status: attempted Version: 0~20161109.git9806da6-7 -------------------------------------------------------------------------------- Finished at 2017-08-20T18:21:24Z Build needed 00:00:52, 265604k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 53.607082092s DC-Time-Estimation: 53.607082092 versus expected 298 (r/m: 4.5589669941104995 ; m: 53.607082092)