DC-Build-Header: vsearch 2.15.0-1 / 2020-10-29 19:59:01 +0000 DC-Task: type:rebuild-binarch-only source:vsearch version:2.15.0-1 chroot:unstable esttime:66 logfile:/tmp/vsearch_2.15.0-1_unstable_clang11.log modes:clang11:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang11 vsearch_2.15.0-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-6-139.eu-central-1.compute.internal +==============================================================================+ | vsearch 2.15.0-1 (amd64) Thu, 29 Oct 2020 19:59:01 +0000 | +==============================================================================+ Package: vsearch Version: 2.15.0-1 Source Version: 2.15.0-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-9e53f59b-ee57-459c-90c3-7d4d9562dd1e' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang11 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=10 + echo 'Install of clang-10' Install of clang-10 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [146 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [734 B] Ign:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [734 B] Ign:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index Get:4 http://127.0.0.1:12990/debian sid/main Translation-en [6391 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources [8989 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 Packages [8492 kB] Fetched 24.0 MB in 3s (6927 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-10 libomp-10-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc4 libomp5-10 libz3-4 Suggested packages: clang-10-doc libomp-10-doc Recommended packages: llvm-10-dev python3 The following NEW packages will be installed: clang-10 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc-9-dev libobjc4 libomp-10-dev libomp5-10 libz3-4 0 upgraded, 19 newly installed, 0 to remove and 1 not upgraded. Need to get 52.3 MB of archives. After this operation, 274 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libllvm10 amd64 1:10.0.1-7 [16.6 MB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp10 amd64 1:10.0.1-7 [9069 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-2.1 [239 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10.2.0-15 [41.6 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libobjc-10-dev amd64 10.2.0-15 [170 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.31-4 [2815 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10.2.0-15 [49.4 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10.2.0-15 [511 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-10-dev amd64 1:10.0.1-7 [5062 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libclang1-10 amd64 1:10.0.1-7 [7293 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 clang-10 amd64 1:10.0.1-7 [106 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.3.0-18 [390 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.3.0-18 [2347 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.3.0-18 [220 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libomp5-10 amd64 1:10.0.1-7 [339 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libomp-10-dev amd64 1:10.0.1-7 [86.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.3 MB in 0s (144 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12312 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../02-libz3-4_4.8.9-1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.9-1) ... Selecting previously unselected package libllvm10:amd64. Preparing to unpack .../03-libllvm10_1%3a10.0.1-7_amd64.deb ... Unpacking libllvm10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libclang-cpp10. Preparing to unpack .../04-libclang-cpp10_1%3a10.0.1-7_amd64.deb ... Unpacking libclang-cpp10 (1:10.0.1-7) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../05-libgc1_1%3a8.0.4-2.1_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-2.1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../06-libobjc4_10.2.0-15_amd64.deb ... Unpacking libobjc4:amd64 (10.2.0-15) ... Selecting previously unselected package libobjc-10-dev:amd64. Preparing to unpack .../07-libobjc-10-dev_10.2.0-15_amd64.deb ... Unpacking libobjc-10-dev:amd64 (10.2.0-15) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../08-libc6-i386_2.31-4_amd64.deb ... Unpacking libc6-i386 (2.31-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../09-lib32gcc-s1_10.2.0-15_amd64.deb ... Unpacking lib32gcc-s1 (10.2.0-15) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../10-lib32stdc++6_10.2.0-15_amd64.deb ... Unpacking lib32stdc++6 (10.2.0-15) ... Selecting previously unselected package libclang-common-10-dev. Preparing to unpack .../11-libclang-common-10-dev_1%3a10.0.1-7_amd64.deb ... Unpacking libclang-common-10-dev (1:10.0.1-7) ... Selecting previously unselected package libclang1-10. Preparing to unpack .../12-libclang1-10_1%3a10.0.1-7_amd64.deb ... Unpacking libclang1-10 (1:10.0.1-7) ... Selecting previously unselected package clang-10. Preparing to unpack .../13-clang-10_1%3a10.0.1-7_amd64.deb ... Unpacking clang-10 (1:10.0.1-7) ... Selecting previously unselected package libasan5:amd64. Preparing to unpack .../14-libasan5_9.3.0-18_amd64.deb ... Unpacking libasan5:amd64 (9.3.0-18) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../15-libgcc-9-dev_9.3.0-18_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../16-libobjc-9-dev_9.3.0-18_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libomp5-10:amd64. Preparing to unpack .../17-libomp5-10_1%3a10.0.1-7_amd64.deb ... Unpacking libomp5-10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libomp-10-dev. Preparing to unpack .../18-libomp-10-dev_1%3a10.0.1-7_amd64.deb ... Unpacking libomp-10-dev (1:10.0.1-7) ... Setting up libasan5:amd64 (9.3.0-18) ... Setting up libz3-4:amd64 (4.8.9-1) ... Setting up libgc1:amd64 (1:8.0.4-2.1) ... Setting up libomp5-10:amd64 (1:10.0.1-7) ... Setting up libc6-i386 (2.31-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libomp-10-dev (1:10.0.1-7) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libobjc4:amd64 (10.2.0-15) ... Setting up libllvm10:amd64 (1:10.0.1-7) ... Setting up libgcc-9-dev:amd64 (9.3.0-18) ... Setting up lib32gcc-s1 (10.2.0-15) ... Setting up lib32stdc++6 (10.2.0-15) ... Setting up libclang1-10 (1:10.0.1-7) ... Setting up libobjc-9-dev:amd64 (9.3.0-18) ... Setting up libobjc-10-dev:amd64 (10.2.0-15) ... Setting up libclang-common-10-dev (1:10.0.1-7) ... Setting up libclang-cpp10 (1:10.0.1-7) ... Setting up clang-10 (1:10.0.1-7) ... Processing triggers for libc-bin (2.31-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-10 g++-4.6 + ln -s clang-10 gcc-4.6 + ln -s clang-10 cpp-4.6 + ln -s clang-10 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-10 g++-4.7 + ln -s clang-10 gcc-4.7 + ln -s clang-10 cpp-4.7 + ln -s clang-10 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-10 g++-4.8 + ln -s clang-10 gcc-4.8 + ln -s clang-10 cpp-4.8 + ln -s clang-10 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-10 g++-4.9 + ln -s clang-10 gcc-4.9 + ln -s clang-10 cpp-4.9 + ln -s clang-10 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-10 g++-5 + ln -s clang-10 gcc-5 + ln -s clang-10 cpp-5 + ln -s clang-10 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-10 g++-6 + ln -s clang-10 gcc-6 + ln -s clang-10 cpp-6 + ln -s clang-10 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-10 g++-7 + ln -s clang-10 gcc-7 + ln -s clang-10 cpp-7 + ln -s clang-10 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-10 g++-8 + ln -s clang-10 gcc-8 + ln -s clang-10 cpp-8 + ln -s clang-10 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-10 g++-9 + ln -s clang-10 gcc-9 + ln -s clang-10 cpp-9 + ln -s clang-10 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-10 g++-10 + ln -s clang-10 gcc-10 + ln -s clang-10 cpp-10 + ln -s clang-10 gcc + echo 'gcc-10 hold' + dpkg --set-selections + echo 'g++-10 hold' + dpkg --set-selections + cd - /build/vsearch-CIFOCi + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-10 clang++ + ln -s clang-10 clang + clang++ --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/vsearch-CIFOCi + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 1 not upgraded. Need to get 1304 kB of archives. After this operation, 4865 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.14.2+dfsg-6 [1035 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.14.2+dfsg-6 [242 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1304 kB in 0s (20.2 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13315 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake-bin (5.14.2+dfsg-6) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake:amd64 (5.14.2+dfsg-6) ... Setting up qt5-qmake-bin (5.14.2+dfsg-6) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.14.2+dfsg-6) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 29 19:59 . drwxr-xr-x 76 root root 4096 Oct 29 19:59 .. -rw-r--r-- 1 root root 276 Oct 29 19:59 qmake.conf -rw-r--r-- 1 root root 3218 Oct 29 19:59 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang11'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/vsearch-CIFOCi/resolver-JW9SOm' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 49.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libdebconfclient0 amd64 0.255 [49.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.6 kB in 0s (3692 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'vsearch' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vsearch.git Please use: git clone https://salsa.debian.org/med-team/vsearch.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1874 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main vsearch 2.15.0-1 (dsc) [2230 B] Get:2 http://127.0.0.1:12990/debian sid/main vsearch 2.15.0-1 (tar) [241 kB] Get:3 http://127.0.0.1:12990/debian sid/main vsearch 2.15.0-1 (diff) [1631 kB] Fetched 1874 kB in 0s (16.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/vsearch-CIFOCi/vsearch-2.15.0' with '<>' I: NOTICE: Log filtering will replace 'build/vsearch-CIFOCi' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [402 B] Get:5 copy:/<>/apt_archive ./ Packages [481 B] Fetched 1840 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-urw-base35 gettext gettext-base ghostscript groff-base intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbz2-dev libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0 libgs9 libgs9-common libicu67 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo liblcms2-2 libmagic-mgc libmagic1 libopenjp2-7 libpaper1 libpipeline1 libpng16-16 libsigsegv2 libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libxml2 m4 man-db markdown po-debconf poppler-data sensible-utils time ucf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff cups-common liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum Recommended packages: curl | wget | lynx bzip2-doc dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libpaper-utils libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-urw-base35 gettext gettext-base ghostscript groff-base intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbz2-dev libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0 libgs9 libgs9-common libicu67 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo liblcms2-2 libmagic-mgc libmagic1 libopenjp2-7 libpaper1 libpipeline1 libpng16-16 libsigsegv2 libsub-override-perl libtiff5 libtool libuchardet0 libwebp6 libxml2 m4 man-db markdown po-debconf poppler-data sbuild-build-depends-main-dummy sensible-utils time ucf zlib1g-dev 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded. Need to get 34.6 MB of archives. After this operation, 126 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [908 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.2-4 [801 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-14 [513 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.66.1-2 [1362 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-6.1 [692 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.2.1 [1007 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 libgs9-common all 9.53.3~dfsg-5 [733 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common-data amd64 0.8-3 [126 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common3 amd64 0.8-3 [58.3 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libdbus-1-3 amd64 1.12.20-1 [217 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libavahi-client3 amd64 0.8-3 [61.7 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libcups2 amd64 2.3.3-3 [348 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b1 [282 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 libfreetype6 amd64 2.10.2+dfsg-4 [410 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 libidn11 amd64 1.33-2.4 [116 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 libjbig2dec0 amd64 0.19-1 [66.9 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 liblcms2-2 amd64 2.9-4+b1 [146 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 libopenjp2-7 amd64 2.3.1-1 [159 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libgs9 amd64 9.53.3~dfsg-5 [2228 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 ghostscript amd64 9.53.3~dfsg-5 [97.2 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 markdown all 1.0.1-10 [17.4 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.6 MB in 0s (125 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14056 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../05-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package sensible-utils. 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Setting up bsdextrautils (2.36-3+b1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.1-2) ... No schema files found: doing nothing. Setting up libijs-0.35:amd64 (0.35-15) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libbrotli1:amd64 (1.0.9-2+b1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up poppler-data (0.4.9-2) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.5-1.1) ... Setting up libjbig2dec0:amd64 (0.19-1) ... Setting up libidn11:amd64 (1.33-2.4) ... Setting up libavahi-common-data:amd64 (0.8-3) ... Setting up libdbus-1-3:amd64 (1.12.20-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:amd64 (0.6.1-2+b1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libopenjp2-7:amd64 (2.3.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.1) ... Setting up markdown (1.0.1-10) ... Setting up libbz2-dev:amd64 (1.0.8-4) ... Setting up libgs9-common (9.53.3~dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up libavahi-common3:amd64 (0.8-3) ... Setting up m4 (1.4.18-4) ... Setting up libfreetype6:amd64 (2.10.2+dfsg-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libavahi-client3:amd64 (0.8-3) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up gettext (0.19.8.1-10) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libcups2:amd64 (2.3.3-3) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libgs9:amd64 (9.53.3~dfsg-5) ... Setting up po-debconf (1.0.21) ... Setting up ghostscript (9.53.3~dfsg-5) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 kfreebsd-amd64 ppc64el) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2 dpkg-dev_1.20.5 g++-10_10.2.0-15 gcc-10_10.2.0-15 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 linux-libc-dev_5.9.1-1 Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc1-2 binutils_2.35.1-2 binutils-common_2.35.1-2 binutils-x86-64-linux-gnu_2.35.1-2 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 clang-10_1:10.0.1-7 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-15 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0+git20201010-2 fontconfig-config_2.13.1-4.2 fonts-urw-base35_20200910-1 g++_4:10.2.0-1 g++-10_10.2.0-15 gcc_4:10.2.0-1 gcc-10_10.2.0-15 gcc-10-base_10.2.0-15 gcc-9-base_9.3.0-18 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 ghostscript_9.53.3~dfsg-5 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10.2.0-15 lib32stdc++6_10.2.0-15 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-15 libatomic1_10.2.0-15 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libavahi-client3_0.8-3 libavahi-common-data_0.8-3 libavahi-common3_0.8-3 libbinutils_2.35.1-2 libblkid1_2.36-3+b1 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-4 libc-dev-bin_2.31-4 libc6_2.31-4 libc6-dev_2.31-4 libc6-i386_2.31-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-15 libclang-common-10-dev_1:10.0.1-7 libclang-cpp10_1:10.0.1-7 libclang1-10_1:10.0.1-7 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2 libctf0_2.35.1-2 libcups2_2.3.3-3 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.20-1 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5 libedit2_3.1-20191231-1 libelf1_0.181-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-4 libgc1_1:8.0.4-2.1 libgcc-10-dev_10.2.0-15 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-15 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-15 libgpg-error0_1.38-2 libgs9_9.53.3~dfsg-5 libgs9-common_9.53.3~dfsg-5 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-4 libidn11_1.33-2.4 libidn2-0_2.3.0-1 libijs-0.35_0.35-15 libisl22_0.22.1-1 libitm1_10.2.0-15 libjbig0_2.1-3.1+b2 libjbig2dec0_0.19-1 libjpeg62-turbo_1:2.0.5-1.1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblcms2-2_2.9-4+b1 libllvm10_1:10.0.1-7 liblsan0_10.2.0-15 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3+b1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libnettle8_3.6-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libobjc-10-dev_10.2.0-15 libobjc-9-dev_9.3.0-18 libobjc4_10.2.0-15 libomp-10-dev_1:10.0.1-7 libomp5-10_1:10.0.1-7 libopenjp2-7_2.3.1-1 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpaper1_1.1.28+b1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libquadmath0_10.2.0-15 libseccomp2_2.4.4-1+b1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3+b1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 libsub-override-perl_0.09-2 libsystemd0_246.6-2 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git191117-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-15 libubsan1_10.2.0-15 libuchardet0_0.0.7-1 libudev1_246.6-2 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libwebp6_0.6.1-2+b1 libxml2_2.9.10+dfsg-6.1 libz3-4_4.8.9-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.1-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 markdown_1.0.1-10 mawk_1.3.4.20200120-2 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 poppler-data_0.4.9-2 qt5-qmake_5.14.2+dfsg-6 qt5-qmake-bin_5.14.2+dfsg-6 qtchooser_66-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 time_1.7-25.1+b1 tzdata_2020d-1 ucf_3.0043 util-linux_2.36-3+b1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: amd64 kfreebsd-amd64 ppc64el Version: 2.15.0-1 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Nilesh Patra Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time Package-List: vsearch deb science optional arch=amd64,kfreebsd-amd64,ppc64el vsearch-examples deb science optional arch=amd64,kfreebsd-amd64,ppc64el Checksums-Sha1: 4a3e41cd5b8430268f9c92cb23ae2efe093f3a45 241192 vsearch_2.15.0.orig.tar.gz 96f2d5d01a8989bfb87f342a91388874ec854979 1630968 vsearch_2.15.0-1.debian.tar.xz Checksums-Sha256: c5d6eca1e4bf0c6e28221356b806c1d2322b51c39f40888636ab094c4df2e231 241192 vsearch_2.15.0.orig.tar.gz f932bd841903f7c02e86c4e65fd49dfa501e476112ac9c9d3fac10b715b6c686 1630968 vsearch_2.15.0-1.debian.tar.xz Files: 6120a10116901bb234202dbc50a5673d 241192 vsearch_2.15.0.orig.tar.gz d0581ab2fe5157c65dbb0b28109ecd32 1630968 vsearch_2.15.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl9noRoUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFKHg/+I2X2gxpep60vDOqv1eAEafSzvqYx gLDha+XMjASBPzHQ4Yk8diOsX/TsZjk1OvQGV5Gx/PLdX/v3430sAGvg06RS3Nbz u9xtuhSTa/V30On9sQJp97TjXgPWOJ58gEfIyoigjxsfafbWPePZNh3GjxdZOLlr Lmv7L6ww3SKh80Vz+AO5fTHvHNV96k+5YfliuWEuijwl7YEGc7lMp7/OkBGcWjJH hvbe6+to3myaqAkAUVwbL98rYD04/lbPitlAVj531SDozfZPjFQAqvNbBB84QVpZ JzaAXWEq54RQ7XPkjICg/GNjsZVdYaUo9HWlSoFUVHhIVVkgTxMzBlhOLtD+2D9a +nIFFGdIqI1HXcmHPtKcHpaqoEK+Y/zuLy0LN2qH8FuEkDcR2Czr3EaqXsSvKWIN QXnoAD1pvw3/r5SH1MKer0259R6MV+kO2aY103vanCdIOBSESkG/HjIhOvnp/QAJ Vr8rdqwG8kqGK5Gt4JHJckUiuCvAKFQTHf+RjsCIE6z0ae2ZYeo0EMhBpQVAH9i4 gB61HsvgJRgVhW581LqVE7z/zOE/8R0IAL/P27LI7fnHXqahWXhWb7MsFE6qwp3p MwvRsPwyAQfGRqhuJbvyo1rRgSvKvmcnPUAAQOch0KHbSOnyheAIKwrSJz4dm17G HPStyk4skP4CKbI= =n7if -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.mn8IzJVY/trustedkeys.kbx': General error gpgv: Signature made Sun Sep 20 18:36:10 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./vsearch_2.15.0-1.dsc dpkg-source: info: extracting vsearch in /<> dpkg-source: info: unpacking vsearch_2.15.0.orig.tar.gz dpkg-source: info: unpacking vsearch_2.15.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sysconf_memory_sizing.patch dpkg-source: info: applying compilerflags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-9e53f59b-ee57-459c-90c3-7d4d9562dd1e SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.15.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf data/simm if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f README.html data/README.html rm -f *.out make[1]: Leaving directory '/<>' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:101: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... no configure: error: in `/<>': configure: error: C++ compiler cannot create executables See `config.log' for more details tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by vsearch configure 2.15.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking ## --------- ## ## Platform. ## ## --------- ## hostname = ip-172-31-6-139 uname -m = x86_64 uname -r = 4.19.0-6-cloud-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2465: checking build system type configure:2479: result: x86_64-pc-linux-gnu configure:2499: checking host system type configure:2512: result: x86_64-pc-linux-gnu configure:2532: checking target system type configure:2545: result: x86_64-pc-linux-gnu configure:2587: checking for a BSD-compatible install configure:2655: result: /usr/bin/install -c configure:2666: checking whether build environment is sane configure:2721: result: yes configure:2872: checking for a thread-safe mkdir -p configure:2911: result: /bin/mkdir -p configure:2918: checking for gawk configure:2948: result: no configure:2918: checking for mawk configure:2934: found /usr/bin/mawk configure:2945: result: mawk configure:2956: checking whether make sets $(MAKE) configure:2978: result: yes configure:3007: checking whether make supports nested variables configure:3024: result: yes configure:3224: checking for g++ configure:3240: found /usr/bin/g++ configure:3251: result: g++ configure:3278: checking for C++ compiler version configure:3287: g++ --version >&5 Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:3298: $? = 0 configure:3287: g++ -v >&5 Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/10 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/9 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/10 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/9 Selected GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/10 Candidate multilib: .;@m64 ... rest of stderr output deleted ... configure:3298: $? = 0 configure:3287: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3298: $? = 1 configure:3287: g++ -qversion >&5 clang: error: unknown argument '-qversion'; did you mean '--version'? clang: error: no input files configure:3298: $? = 1 configure:3318: checking whether the C++ compiler works configure:3340: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto conftest.cpp >&5 /usr/bin/ld: /usr/lib/llvm-10/bin/../lib/LLVMgold.so: error loading plugin: /usr/lib/llvm-10/bin/../lib/LLVMgold.so: cannot open shared object file: No such file or directory clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:3344: $? = 1 configure:3382: result: no configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "vsearch" | #define PACKAGE_TARNAME "vsearch" | #define PACKAGE_VERSION "2.15.0" | #define PACKAGE_STRING "vsearch 2.15.0" | #define PACKAGE_BUGREPORT "torognes@ifi.uio.no" | #define PACKAGE_URL "" | #define PACKAGE "vsearch" | #define VERSION "2.15.0" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:3387: error: in `/<>': configure:3389: error: C++ compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now -flto' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_host=x86_64-pc-linux-gnu ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=mawk ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_make_make_set=yes ac_cv_target=x86_64-pc-linux-gnu am_cv_make_support_nested_variables=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /<>/missing aclocal-1.16' ALLOCA='' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AUTOCONF='${SHELL} /<>/missing autoconf' AUTOHEADER='${SHELL} /<>/missing autoheader' AUTOMAKE='${SHELL} /<>/missing automake-1.16' AWK='mawk' CC='' CCDEPMODE='' CFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' CXX='g++' CXXCPP='' CXXDEPMODE='' CXXFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto' CYGPATH_W='echo' DEFS='' DEPDIR='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' GREP='' HAVE_BZLIB_FALSE='' HAVE_BZLIB_TRUE='' HAVE_MAN_HTML_FALSE='' HAVE_MAN_HTML_TRUE='' HAVE_PS2PDF='' HAVE_PS2PDF_FALSE='' HAVE_PS2PDF_TRUE='' HAVE_PTHREADS_FALSE='' HAVE_PTHREADS_TRUE='' HAVE_ZLIB_FALSE='' HAVE_ZLIB_TRUE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='-Wl,-z,relro -Wl,-z,now -flto' LIBOBJS='' LIBS='' LTLIBOBJS='' MACOSX_DEPLOYMENT_TARGET='10.9' MAKEINFO='${SHELL} /<>/missing makeinfo' MKDIR_P='/bin/mkdir -p' OBJEXT='' PACKAGE='vsearch' PACKAGE_BUGREPORT='torognes@ifi.uio.no' PACKAGE_NAME='vsearch' PACKAGE_STRING='vsearch 2.15.0' PACKAGE_TARNAME='vsearch' PACKAGE_URL='' PACKAGE_VERSION='2.15.0' PATH_SEPARATOR=':' POW_LIB='' RANLIB='' SET_MAKE='' SHELL='/bin/bash' STRIP='' TARGET_AARCH64_FALSE='' TARGET_AARCH64_TRUE='' TARGET_PPC_FALSE='' TARGET_PPC_TRUE='' TARGET_WIN_FALSE='' TARGET_WIN_TRUE='' VERSION='2.15.0' ac_ct_CC='' ac_ct_CXX='g++' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/install-sh' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target='x86_64-pc-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='pc' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "vsearch" #define PACKAGE_TARNAME "vsearch" #define PACKAGE_VERSION "2.15.0" #define PACKAGE_STRING "vsearch 2.15.0" #define PACKAGE_BUGREPORT "torognes@ifi.uio.no" #define PACKAGE_URL "" #define PACKAGE "vsearch" #define VERSION "2.15.0" configure: exit 77 dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking returned exit code 77 make: *** [debian/rules:25: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-10-29T19:59:32Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 23472 Build-Time: 5 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 8 Job: vsearch_2.15.0-1 Machine Architecture: amd64 Package: vsearch Package-Time: 31 Source-Version: 2.15.0-1 Space: 23472 Status: attempted Version: 2.15.0-1 -------------------------------------------------------------------------------- Finished at 2020-10-29T19:59:32Z Build needed 00:00:31, 23472k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 31.048325574s DC-Time-Estimation: 31.048325574 versus expected 66 (r/m: 1.1257184978525436 ; m: 31.048325574)