DC-Build-Header: gmap 2021-08-25+ds-1 / 2021-10-26 21:40:23 +0000 DC-Task: type:rebuild-binarch-only source:gmap version:2021-08-25+ds-1 chroot:unstable esttime:329 logfile:/tmp/gmap_2021-08-25+ds-1_unstable_clang13.log modes:clang13:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang13 gmap_2021-08-25+ds-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-12-37.eu-central-1.compute.internal +==============================================================================+ | gmap 2021-08-25+ds-1 (amd64) Tue, 26 Oct 2021 21:40:23 +0000 | +==============================================================================+ Package: gmap Version: 2021-08-25+ds-1 Source Version: 2021-08-25+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-bdc53bec-659d-42f2-b6f7-ea9a7192093d' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang13 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=13 + echo 'Install of clang-13' Install of clang-13 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [165 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-2004.40-F-2021-10-26-0202.15.pdiff [47.3 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-2004.40-F-2021-10-26-0202.15.pdiff [47.3 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-2004.40-F-2021-10-26-0202.15.pdiff [55.9 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-2004.40-F-2021-10-26-0202.15.pdiff [55.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main Translation-en [6586 kB] Fetched 6981 kB in 3s (2741 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-13 libomp-13-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc4 libomp5-13 libxml2 libz3-4 Suggested packages: clang-13-doc libomp-13-doc Recommended packages: llvm-13-dev python3 The following NEW packages will be installed: clang-13 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc-9-dev libobjc4 libomp-13-dev libomp5-13 libxml2 libz3-4 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 68.5 MB of archives. After this operation, 379 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libllvm13 amd64 1:13.0.0-8 [19.7 MB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp13 amd64 1:13.0.0-8 [10.5 MB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-3 [239 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 11.2.0-10 [43.2 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libobjc-11-dev amd64 11.2.0-10 [170 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.32-4 [2624 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 11.2.0-10 [49.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 11.2.0-10 [601 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-13-dev amd64 1:13.0.0-8 [5730 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libclang1-13 amd64 1:13.0.0-8 [6093 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 clang-13 amd64 1:13.0.0-8 [119 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.4.0-3 [2734 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.4.0-3 [2343 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.4.0-3 [219 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libomp5-13 amd64 1:13.0.0-8 [377 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libomp-13-dev amd64 1:13.0.0-8 [482 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.5 MB in 0s (150 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12431 files and directories currently installed.) Preparing to unpack .../00-libmd0_1.0.4-1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20210910-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../03-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../04-libxml2_2.9.12+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../05-libz3-4_4.8.12-1+b1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-1+b1) ... Selecting previously unselected package libllvm13:amd64. Preparing to unpack .../06-libllvm13_1%3a13.0.0-8_amd64.deb ... Unpacking libllvm13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libclang-cpp13. Preparing to unpack .../07-libclang-cpp13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-cpp13 (1:13.0.0-8) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../08-libgc1_1%3a8.0.4-3_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_11.2.0-10_amd64.deb ... Unpacking libobjc4:amd64 (11.2.0-10) ... Selecting previously unselected package libobjc-11-dev:amd64. Preparing to unpack .../10-libobjc-11-dev_11.2.0-10_amd64.deb ... Unpacking libobjc-11-dev:amd64 (11.2.0-10) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../11-libc6-i386_2.32-4_amd64.deb ... Unpacking libc6-i386 (2.32-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../12-lib32gcc-s1_11.2.0-10_amd64.deb ... Unpacking lib32gcc-s1 (11.2.0-10) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../13-lib32stdc++6_11.2.0-10_amd64.deb ... Unpacking lib32stdc++6 (11.2.0-10) ... Selecting previously unselected package libclang-common-13-dev. Preparing to unpack .../14-libclang-common-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-common-13-dev (1:13.0.0-8) ... Selecting previously unselected package libclang1-13. Preparing to unpack .../15-libclang1-13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang1-13 (1:13.0.0-8) ... Selecting previously unselected package clang-13. Preparing to unpack .../16-clang-13_1%3a13.0.0-8_amd64.deb ... Unpacking clang-13 (1:13.0.0-8) ... Selecting previously unselected package libasan5:amd64. Preparing to unpack .../17-libasan5_9.4.0-3_amd64.deb ... Unpacking libasan5:amd64 (9.4.0-3) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../18-libgcc-9-dev_9.4.0-3_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../19-libobjc-9-dev_9.4.0-3_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libomp5-13:amd64. Preparing to unpack .../20-libomp5-13_1%3a13.0.0-8_amd64.deb ... Unpacking libomp5-13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libomp-13-dev. Preparing to unpack .../21-libomp-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libomp-13-dev (1:13.0.0-8) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libasan5:amd64 (9.4.0-3) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libgc1:amd64 (1:8.0.4-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libc6-i386 (2.32-4) ... Setting up libomp5-13:amd64 (1:13.0.0-8) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libobjc4:amd64 (11.2.0-10) ... Setting up libgcc-9-dev:amd64 (9.4.0-3) ... Setting up lib32gcc-s1 (11.2.0-10) ... Setting up lib32stdc++6 (11.2.0-10) ... Setting up libllvm13:amd64 (1:13.0.0-8) ... Setting up libobjc-9-dev:amd64 (9.4.0-3) ... Setting up libclang-common-13-dev (1:13.0.0-8) ... Setting up libomp-13-dev (1:13.0.0-8) ... Setting up libobjc-11-dev:amd64 (11.2.0-10) ... Setting up libclang1-13 (1:13.0.0-8) ... Setting up libclang-cpp13 (1:13.0.0-8) ... Setting up clang-13 (1:13.0.0-8) ... Processing triggers for libc-bin (2.32-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10 11' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-13 g++-4.6 + ln -s clang-13 gcc-4.6 + ln -s clang-13 cpp-4.6 + ln -s clang-13 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-13 g++-4.7 + ln -s clang-13 gcc-4.7 + ln -s clang-13 cpp-4.7 + ln -s clang-13 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-13 g++-4.8 + ln -s clang-13 gcc-4.8 + ln -s clang-13 cpp-4.8 + ln -s clang-13 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-13 g++-4.9 + ln -s clang-13 gcc-4.9 + ln -s clang-13 cpp-4.9 + ln -s clang-13 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-13 g++-5 + ln -s clang-13 gcc-5 + ln -s clang-13 cpp-5 + ln -s clang-13 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-13 g++-6 + ln -s clang-13 gcc-6 + ln -s clang-13 cpp-6 + ln -s clang-13 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-13 g++-7 + ln -s clang-13 gcc-7 + ln -s clang-13 cpp-7 + ln -s clang-13 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-13 g++-8 + ln -s clang-13 gcc-8 + ln -s clang-13 cpp-8 + ln -s clang-13 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-13 g++-9 + ln -s clang-13 gcc-9 + ln -s clang-13 cpp-9 + ln -s clang-13 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-13 g++-10 + ln -s clang-13 gcc-10 + ln -s clang-13 cpp-10 + ln -s clang-13 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-11 gcc-11 cpp-11 gcc + ln -s clang++-13 g++-11 + ln -s clang-13 gcc-11 + ln -s clang-13 cpp-11 + ln -s clang-13 gcc + echo 'gcc-11 hold' + dpkg --set-selections + echo 'g++-11 hold' + dpkg --set-selections + cd - /build/gmap-H9QKpJ + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-13 clang++ + ln -s clang-13 clang + clang++ --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/gmap-H9QKpJ + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 1322 kB of archives. After this operation, 4914 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.15.2+dfsg-12 [1046 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.15.2+dfsg-12 [249 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1322 kB in 0s (57.3 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13528 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake-bin (5.15.2+dfsg-12) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake:amd64 (5.15.2+dfsg-12) ... Setting up qt5-qmake-bin (5.15.2+dfsg-12) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.15.2+dfsg-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 26 21:40 . drwxr-xr-x 76 root root 4096 Oct 26 21:40 .. -rw-r--r-- 1 root root 276 Oct 26 21:40 qmake.conf -rw-r--r-- 1 root root 3218 Oct 26 21:40 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang13'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/gmap-H9QKpJ/resolver-5AUMKv' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gmap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gmap.git Please use: git clone https://salsa.debian.org/med-team/gmap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2568 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main gmap 2021-08-25+ds-1 (dsc) [2243 B] Get:2 http://127.0.0.1:12990/debian sid/main gmap 2021-08-25+ds-1 (tar) [2555 kB] Get:3 http://127.0.0.1:12990/debian sid/main gmap 2021-08-25+ds-1 (diff) [10.7 kB] Fetched 2568 kB in 0s (26.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gmap-H9QKpJ/gmap-2021-08-25+ds' with '<>' I: NOTICE: Log filtering will replace 'build/gmap-H9QKpJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [390 B] Get:5 copy:/<>/apt_archive ./ Packages [474 B] Fetched 1821 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbz2-dev libdebhelper-perl libelf1 libfile-stripnondeterminism-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 m4 man-db po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbz2-dev libdebhelper-perl libelf1 libfile-stripnondeterminism-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 9363 kB of archives. After this operation, 33.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.37.2-4 [143 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.5-1 [823 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.21-4 [510 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-15 [513 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.21-4 [1311 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.5.2 [1056 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 help2man amd64 1.48.5 [143 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9363 kB in 0s (129 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14273 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4_amd64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... 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Unpacking libelf1:amd64 (0.185-2) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.14-1_amd64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.5.2_all.deb ... Unpacking debhelper (13.5.2) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.48.5_amd64.deb ... Unpacking help2man (1.48.5) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../31-libbz2-dev_1.0.8-4_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../32-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../33-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.37.2-4) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.185-2) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libbz2-dev:amd64 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.5.2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 armel armhf i386 mips64el mipsel ppc64el riscv64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 clang-13_1:13.0.0-8 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-10 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.78 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-9-base_9.4.0-3 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 help2man_1.48.5 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_11.2.0-10 lib32stdc++6_11.2.0-10 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-10 libatomic1_11.2.0-10 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-4 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-i386_2.32-4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libclang-common-13-dev_1:13.0.0-8 libclang-cpp13_1:13.0.0-8 libclang1-13_1:13.0.0-8 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9 libedit2_3.1-20210910-1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgc1_1:8.0.4-3 libgcc-11-dev_11.2.0-10 libgcc-9-dev_9.4.0-3 libgcc-s1_11.2.0-10 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libitm1_11.2.0-10 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libllvm13_1:13.0.0-8 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-10 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libobjc-11-dev_11.2.0-10 libobjc-9-dev_9.4.0-3 libobjc4_11.2.0-10 libomp-13-dev_1:13.0.0-8 libomp5-13_1:13.0.0-8 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libquadmath0_11.2.0-10 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libubsan1_11.2.0-10 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libz3-4_4.8.12-1+b1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 qt5-qmake_5.15.2+dfsg-12 qt5-qmake-bin_5.15.2+dfsg-12 qtchooser_66-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gmap Binary: gmap Architecture: amd64 arm64 armel armhf i386 mips64el mipsel ppc64el riscv64 Version: 2021-08-25+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Shaun Jackman , Andreas Tille , Alexandre Mestiashvili , Nilesh Patra Homepage: http://research-pub.gene.com/gmap Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/gmap Vcs-Git: https://salsa.debian.org/med-team/gmap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev Package-List: gmap deb science optional arch=amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,riscv64 Checksums-Sha1: ce84c5b04fdb6e0ef1594a0b7938c08b19ea7d2e 2554900 gmap_2021-08-25+ds.orig.tar.xz 4910ea51402854967882ab5bb83c6c810b17896e 10740 gmap_2021-08-25+ds-1.debian.tar.xz Checksums-Sha256: 219b2f4205c930dcbe9b84d9fe517c22af2aaf84d84395db8a82c7e1e9c04e59 2554900 gmap_2021-08-25+ds.orig.tar.xz fdf7c91d42e1f7e80ffdf1bdb07c739844fadf88b5b5cbbb8b358f133b773cea 10740 gmap_2021-08-25+ds-1.debian.tar.xz Files: 49751b4798c2cd856e679aecd7b56d19 2554900 gmap_2021-08-25+ds.orig.tar.xz 8fa358e0bdd08a7d44c6cc64aa5e5d7b 10740 gmap_2021-08-25+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEqePYUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGBtBAAkY96qrLHkeCVxJUQWscJphoBUQT5 Bo/13+Ahi/Q91wn/yGTGAfagYZTzMj2ubmRbY+yJRuDWg1/PcqEJKbsDQfjGs19h s3rZeXkLaRAsAf3cnH8NWavxbTaQaeSOpcUHWJXXXkFqf2t4IVWHKxmk758E5e3g KtX+EK+s1l0dBQ5tl4rkKm4nUfNg0ikKy6bgOJ0MzW93ikT90zngR6lN11qJJWhO T5rbgipF5W9+Tu3VgN05ln5PiSiRZdZeDf5wHQePhKAuUtGsitBv3+e8lRNAKpdb WvJclH5E8UM/5WExxRWurpS9bz1JQwODJoPbdltgUBv5FFd5U2PVnHMsflGNL/PR 3bZgtZmY0JTnohMBbv884E/BczhMVn/+CxLKKFPbWX+zL9iy//0F5RvhpbcX6izu rH6/Js9mP0jniaZGxEoYZ7hr72+W17VMD+uyTzT5eCyobQwgaJabjGtSuYcQfwXR gxZk7qvjyzZrPGP+xfHYBHY1oj3h+olBmLp6SXZjCCw+yCUbyWM3cUHIpR+IHGfm hOgNvA4oojAIf/MKDXZgz2cbhE1ZzZ4quKigGv2DpNs0FptPBNBjAPv7IJe5SLvt 8qMOU0QUjZYz45gTd61G6xfaluJuJOGUwYkwg4EMosf8emtT5PGmhr6lIK5IKRRX K1G7XyxYeoF+E1w= =q3Tp -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.dGRs8BxJ/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 28 17:57:10 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gmap_2021-08-25+ds-1.dsc dpkg-source: info: extracting gmap in /<> dpkg-source: info: unpacking gmap_2021-08-25+ds.orig.tar.xz dpkg-source: info: unpacking gmap_2021-08-25+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying install-data-local dpkg-source: info: applying remove_getopt_code_copy.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-bdc53bec-659d-42f2-b6f7-ea9a7192093d SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package gmap dpkg-buildpackage: info: source version 2021-08-25+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:78: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:78: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:78: the top level configure.ac:87: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:87: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:87: the top level configure.ac:117: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:117: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:117: the top level configure.ac:124: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:124: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:124: the top level configure.ac:173: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:173: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:173: the top level configure.ac:180: warning: The macro `AC_LANG_C' is obsolete. configure.ac:180: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/acx_pthread.m4:47: ACX_PTHREAD is expanded from... configure.ac:180: the top level configure.ac:180: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:180: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... config/acx_pthread.m4:47: ACX_PTHREAD is expanded from... configure.ac:180: the top level configure.ac:189: warning: The macro `AC_LANG_C' is obsolete. configure.ac:189: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/acx_pthread.m4:47: ACX_PTHREAD is expanded from... configure.ac:189: the top level configure.ac:189: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:189: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... config/acx_pthread.m4:47: ACX_PTHREAD is expanded from... configure.ac:189: the top level configure.ac:195: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:195: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:195: the top level configure.ac:229: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:229: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:229: the top level configure.ac:251: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:251: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:251: the top level configure.ac:258: warning: The macro `AC_LANG_C' is obsolete. configure.ac:258: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from... configure.ac:258: the top level configure.ac:258: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:258: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from... configure.ac:258: the top level configure.ac:259: warning: The macro `AC_LANG_C' is obsolete. configure.ac:259: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from... configure.ac:259: the top level configure.ac:259: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:259: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from... configure.ac:259: the top level configure.ac:268: warning: The macro `AC_LANG_C' is obsolete. configure.ac:268: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from... configure.ac:268: the top level configure.ac:268: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:268: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from... configure.ac:268: the top level configure.ac:269: warning: The macro `AC_LANG_C' is obsolete. configure.ac:269: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from... configure.ac:269: the top level configure.ac:269: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:269: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from... configure.ac:269: the top level configure.ac:292: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:292: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... config/fopen.m4:25: ACX_FUNC_FOPEN_BINARY is expanded from... configure.ac:292: the top level configure.ac:293: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:293: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... config/fopen.m4:26: ACX_FUNC_FOPEN_TEXT is expanded from... configure.ac:293: the top level configure.ac:327: warning: The macro `AC_LANG_C' is obsolete. configure.ac:327: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... config/sse2_shift_defect.m4:2: ACX_SSE2_SHIFT_DEFECT is expanded from... configure.ac:327: the top level configure.ac:332: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:332: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:332: the top level configure.ac:384: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:384: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:384: the top level configure.ac:436: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:436: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:436: the top level configure.ac:462: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:462: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:462: the top level configure.ac:511: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:511: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:511: the top level configure.ac:106: installing 'config/compile' configure.ac:87: installing 'config/config.guess' configure.ac:87: installing 'config/config.sub' configure.ac:111: installing 'config/install-sh' configure.ac:111: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' src/Makefile.am:905: warning: variable 'dist_iit_pileup_SOURCES' is defined but no program or src/Makefile.am:905: library has 'iit_pileup' as canonical name (possible typo) src/Makefile.am:945: warning: variable 'dist_umi_correct_SOURCES' is defined but no program or src/Makefile.am:945: library has 'umi_correct' as canonical name (possible typo) src/Makefile.am:596: warning: variable 'dist_uniqscan_SOURCES' is defined but no program or src/Makefile.am:596: library has 'uniqscan' as canonical name (possible typo) src/Makefile.am:651: warning: variable 'dist_uniqscanl_SOURCES' is defined but no program or src/Makefile.am:651: library has 'uniqscanl' as canonical name (possible typo) src/Makefile.am:904: warning: variable 'iit_pileup_LDADD' is defined but no program or src/Makefile.am:904: library has 'iit_pileup' as canonical name (possible typo) src/Makefile.am:944: warning: variable 'umi_correct_LDADD' is defined but no program or src/Makefile.am:944: library has 'umi_correct' as canonical name (possible typo) src/Makefile.am:594: warning: variable 'uniqscan_LDADD' is defined but no program or src/Makefile.am:594: library has 'uniqscan' as canonical name (possible typo) src/Makefile.am:649: warning: variable 'uniqscanl_LDADD' is defined but no program or src/Makefile.am:649: library has 'uniqscanl' as canonical name (possible typo) src/Makefile.am:903: warning: variable 'iit_pileup_LDFLAGS' is defined but no program or src/Makefile.am:903: library has 'iit_pileup' as canonical name (possible typo) src/Makefile.am:943: warning: variable 'umi_correct_LDFLAGS' is defined but no program or src/Makefile.am:943: library has 'umi_correct' as canonical name (possible typo) src/Makefile.am:593: warning: variable 'uniqscan_LDFLAGS' is defined but no program or src/Makefile.am:593: library has 'uniqscan' as canonical name (possible typo) src/Makefile.am:648: warning: variable 'uniqscanl_LDFLAGS' is defined but no program or src/Makefile.am:648: library has 'uniqscanl' as canonical name (possible typo) parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-gmapdb=/var/cache/gmap \ --bindir=/usr/lib/gmap ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap checking package version... 2021-08-25 loading default site script ./config.site checking CFLAGS... -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for non-Intel CPU... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... none checking whether to enable maintainer-specific portions of Makefiles... no checking bindir... /usr/lib/gmap checking for a working version of perl... /usr/bin/perl checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking for C compiler vendor... clang checking for rint in -lm... yes checking for pthreads feature... not specified so enabled by default checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for fcntl.h... yes checking for limits.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for inline... inline checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for size_t... yes checking for off_t... yes checking for caddr_t... yes checking size of unsigned long... 8 checking size of unsigned long long... 8 checking size of off_t... 8 checking for _LARGEFILE_SOURCE value needed for large files... no checking whether alloca is enabled... not specified so disabled by default checking whether mmap is enabled... not specified so enabled by default checking for working mmap with MAP_FIXED... yes checking for working mmap with MAP_VARIABLE... no checking for MAP_FILE in mmap... yes checking for MAP_VARIABLE in mmap... no checking for MAP_SHARED in mmap... yes checking for MAP_PRIVATE in mmap... yes checking for MAP_FAILED in mmap... yes checking for MADV_DONTNEED in madvise... yes checking for MADV_WILLNEED in madvise... yes checking for MADV_RANDOM in madvise... yes checking for MADV_SEQUENTIAL in madvise... yes checking for SHM_NORESERVE in shmget... yes checking for ceil... yes checking for floor... yes checking for index... yes checking for log... yes checking for madvise... yes checking for memcpy... yes checking for memmove... yes checking for memset... yes checking for munmap... yes checking for pow... yes checking for rint... yes checking for stat64... yes checking for strtoul... yes checking for sysconf... yes checking for sysctl... no checking for sigaction... yes checking for shmget... yes checking for shmctl... yes checking for shmat... yes checking for shmdt... yes checking for semget... yes checking for semctl... yes checking for semop... yes checking for struct stat64... no checking for pagesize via sysconf... yes checking for pagesize via sysctl... no checking whether fopen accepts "b" mode... yes checking whether fopen accepts "t" mode... yes checking for gcc options needed to detect all undeclared functions... -fno-builtin checking whether C compiler accepts -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -mpopcnt... yes checking whether __builtin_popcount is declared... no checking whether __builtin_clz is declared... no checking whether __builtin_ctz is declared... no checking for bsr instruction in assembly... yes checking compiler is defective and requires an immediate in sse2 shift commands... no checking for _mm_extract_epi64... yes checking for _mm_popcnt_u64... yes checking for whether simd is enabled... not specified so enabled by default checking for sse2 support... yes checking for ssse3 support... yes checking for sse4.1 support... yes checking for sse4.2 support... yes checking for popcnt support... yes checking for bmi1 support... no checking for avx2 support... yes checking for bmi2 support... no checking for avx512 support... yes checking for avx512bw and avx512vl support... no checking whether C compiler accepts -msse2... yes checking for emmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3... yes checking for tmmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes checking for smmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes checking for nmmintrin.h header file... yes checking for mm_popcnt run support... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes checking for immintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd... yes checking for nmmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw... yes checking for avx512vl and avx512bw linker support... yes checking gmapdb... /var/cache/gmap checking MAX_STACK_READLENGTH... 300 checking for zlib support... enabled checking for zlib.h... yes checking for gzopen in -lz... yes checking for gzeof in -lz... yes checking for gzgetc in -lz... yes checking for gzgets in -lz... yes checking for gzclose in -lz... yes checking if zlib package is complete... working checking for gzbuffer in -lz... yes checking for bzlib support... enabled checking for bzlib.h... yes checking for BZ2_bzReadOpen in -lbz2... yes checking for BZ2_bzRead in -lbz2... yes checking for BZ2_bzReadClose in -lbz2... yes checking if bzlib package is complete... working checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/gmap_process.pl config.status: creating util/gmap_build.pl config.status: creating util/gmap_cat.pl config.status: creating util/md_coords.pl config.status: creating util/fa_coords.pl config.status: creating util/psl_splicesites.pl config.status: creating util/psl_introns.pl config.status: creating util/psl_genes.pl config.status: creating util/ensembl_genes.pl config.status: creating util/gtf_splicesites.pl config.status: creating util/gtf_transcript_splicesites.pl config.status: creating util/gtf_introns.pl config.status: creating util/gtf_genes.pl config.status: creating util/gff3_splicesites.pl config.status: creating util/gff3_introns.pl config.status: creating util/gff3_genes.pl config.status: creating util/dbsnp_iit.pl config.status: creating util/gvf_iit.pl config.status: creating util/vcf_iit.pl config.status: creating tests/Makefile config.status: creating tests/align.test config.status: creating tests/coords1.test config.status: creating tests/setup1.test config.status: creating tests/iit.test config.status: creating src/config.h config.status: executing depfiles commands checking standard compiler and flags to be used... gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking standard linker flags to be used... checking pthread compiler flags to be used... -pthread checking popcnt flags to be used... -mpopcnt checking compile level... avx512 checking AVX512 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw make[1]: Leaving directory '/<>' dh_auto_build make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DMAIN=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c regiondb-write.c:478:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_USHORTS(buffer->offsets,offsets_size,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:22:31: note: expanded from macro 'FREAD_USHORTS' #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:479:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:22:31: note: expanded from macro 'FREAD_USHORTS' #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-access.o `test -f 'access.c' || echo './'`access.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo './'`interval.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo './'`intlist.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo './'`parserange.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo './'`indexdb-cat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo './'`parserange.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo './'`gsnap_select.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo './'`gsnapl_select.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c regiondb-write.c:478:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_USHORTS(buffer->offsets,offsets_size,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:22:31: note: expanded from macro 'FREAD_USHORTS' #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:479:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:22:31: note: expanded from macro 'FREAD_USHORTS' #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c regiondb-write.c:478:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_USHORTS(buffer->offsets,offsets_size,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:22:31: note: expanded from macro 'FREAD_USHORTS' #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ regiondb-write.c:479:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:22:31: note: expanded from macro 'FREAD_USHORTS' #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo './'`atoi.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-md5.o `test -f 'md5.c' || echo './'`md5.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo './'`atoiindex.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-interval.o `test -f 'interval.c' || echo './'`interval.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-trindex.o `test -f 'trindex.c' || echo './'`trindex.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-list.o `test -f 'list.c' || echo './'`list.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-interval.o `test -f 'interval.c' || echo './'`interval.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-filestring.o `test -f 'filestring.c' || echo './'`filestring.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-samheader.o `test -f 'samheader.c' || echo './'`samheader.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-samread.o `test -f 'samread.c' || echo './'`samread.c iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ samheader.c:231:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),CHUNK,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:236:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),headerlen,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-sam_sort.o `test -f 'sam_sort.c' || echo './'`sam_sort.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-except.o `test -f 'except.c' || echo './'`except.c sam_sort.c:1009:8: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line,linelen+1,fp_sam); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ sam_sort.c:1026:8: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line,linelen+1,fp_sam); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ sam_sort.c:1393:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line,linelen+1,fp_sam); /* Will read linelen characters with '\n' and then '\0' */ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ sam_sort.c:1602:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line,linelen+1,fp_sam); /* Will read linelen characters with '\n' and then '\0' */ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c 4 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-samread.o `test -f 'samread.c' || echo './'`samread.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-table.o `test -f 'table.c' || echo './'`table.c iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-tableint.o `test -f 'tableint.c' || echo './'`tableint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-list.o `test -f 'list.c' || echo './'`list.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-datadir.o `test -f 'datadir.c' || echo './'`datadir.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o velocity_counts-velocity-counts.o `test -f 'velocity-counts.c' || echo './'`velocity-counts.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-parserange.o `test -f 'parserange.c' || echo './'`parserange.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c transcriptome.c:132:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&divint,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-samread.o `test -f 'samread.c' || echo './'`samread.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-table.o `test -f 'table.c' || echo './'`table.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-tableint.o `test -f 'tableint.c' || echo './'`tableint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-uinttableuint.o `test -f 'uinttableuint.c' || echo './'`uinttableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-uinttable.o `test -f 'uinttable.c' || echo './'`uinttable.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-equiv-class-bulk.o `test -f 'equiv-class-bulk.c' || echo './'`equiv-class-bulk.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-bitvector.o `test -f 'bitvector.c' || echo './'`bitvector.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-datadir.o `test -f 'datadir.c' || echo './'`datadir.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bulk_counts-bulk-counts.o `test -f 'bulk-counts.c' || echo './'`bulk-counts.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-parserange.o `test -f 'parserange.c' || echo './'`parserange.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c transcriptome.c:132:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&divint,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-samread.o `test -f 'samread.c' || echo './'`samread.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-table.o `test -f 'table.c' || echo './'`table.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-tableint.o `test -f 'tableint.c' || echo './'`tableint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-uinttableuint.o `test -f 'uinttableuint.c' || echo './'`uinttableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-uinttable.o `test -f 'uinttable.c' || echo './'`uinttable.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-equiv-class-sc.o `test -f 'equiv-class-sc.c' || echo './'`equiv-class-sc.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-bitvector.o `test -f 'bitvector.c' || echo './'`bitvector.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-datadir.o `test -f 'datadir.c' || echo './'`datadir.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sc_counts-sc-counts.o `test -f 'sc-counts.c' || echo './'`sc-counts.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo './'`genome_canonical.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-block.o `test -f 'block.c' || echo './'`block.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-match.o `test -f 'match.c' || echo './'`match.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-request.o `test -f 'request.c' || echo './'`request.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-result.o `test -f 'result.c' || echo './'`result.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-output.o `test -f 'output.c' || echo './'`output.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c samheader.c:231:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),CHUNK,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:236:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),headerlen,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo './'`genome_canonical.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1881:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_high_fd,buffer,1); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ indexdb.c:1885:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo './'`block.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo './'`match.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo './'`result.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c samheader.c:231:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),CHUNK,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:236:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),headerlen,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c transcriptome.c:132:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&divint,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo './'`exon.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo './'`bitvector.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo './'`method.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c stage3hr.c:12445:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12444:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12458:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12457:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12534:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12533:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12547:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12546:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12802:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12801:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12815:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12814:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12891:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12890:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12904:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12903:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo './'`single-cell.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo './'`request.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo './'`output.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c samheader.c:231:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),CHUNK,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:236:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),headerlen,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c iit-read.c:1760:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c transcriptome.c:132:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&divint,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c indexdb.c:1881:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_high_fd,buffer,1); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ indexdb.c:1885:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo './'`exon.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo './'`bitvector.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo './'`method.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c stage3hr.c:12445:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12444:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12458:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12457:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12534:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12533:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12547:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12546:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12802:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12801:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12815:61: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12814:65: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12891:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12890:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ stage3hr.c:12904:60: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_queryend_p*/false,/*splicetype_queryend*/END,/*ambig_prob_queryend*/0.0, ^~~ stage3hr.c:12903:64: warning: implicit conversion from enumeration type 'Endtype_T' to different enumeration type 'Splicetype_T' [-Wenum-conversion] /*splice_querystart_p*/false,/*splicetype_querystart*/END,/*ambig_prob_querystart*/0.0, ^~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo './'`single-cell.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c samheader.c:231:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),CHUNK,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samheader.c:236:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(buffer,sizeof(char),headerlen,input); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c 2 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-except.o `test -f 'except.c' || echo './'`except.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-assert.o `test -f 'assert.c' || echo './'`assert.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-mem.o `test -f 'mem.c' || echo './'`mem.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-intlist.o `test -f 'intlist.c' || echo './'`intlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-list.o `test -f 'list.c' || echo './'`list.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c:14:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ littleendian.c:27:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:45:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ littleendian.c:60:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ littleendian.c:66:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-interval.o `test -f 'interval.c' || echo './'`interval.c bigendian.c:16:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,1); ^~~~~ ~~~~~~~~ bigendian.c:215:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,4); ^~~~~ ~~~~~~~~ bigendian.c:299:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,4); ^~~~ ~~~~~~~~ bigendian.c:367:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] write(fd,buf,8); ^~~~~ ~~~~~~~~ bigendian.c:484:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(fd,buf,8); ^~~~ ~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c 5 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-access.o `test -f 'access.c' || echo './'`access.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-filestring.o `test -f 'filestring.c' || echo './'`filestring.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c access.c:532:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:537:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:543:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:548:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:554:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:565:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:570:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:596:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:598:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:604:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:606:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT2),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:612:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:614:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:620:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:622:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1068:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1070:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].a),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1071:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].b),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1072:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].leftindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1073:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->nodes[i].rightindex),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].low),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1122:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&(new->intervals[i].high),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1123:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1132:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1134:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&uint4,fp); ^~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1136:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&(new->intervals[i].type),fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1196:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1278:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1389:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1393:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1397:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1401:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1405:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c 16 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-md5.o `test -f 'md5.c' || echo './'`md5.c iit-read.c:1760:gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1761:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].a),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1762:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].b),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1763:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1764:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1889:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1890:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1892:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:1896:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&(new->intervals[divno][i].type),sizeof(int),1,fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2144:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2150:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT8(&length8,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:29:27: note: expanded from macro 'FREAD_UINT8' #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2293:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINT(&length,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:24:26: note: expanded from macro 'FREAD_UINT' #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ iit-read.c:2482:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2486:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2491:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2497:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2502:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2513:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2535:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2588:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&version,fp); ^~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3103:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ iit-read.c:3524:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_INT(&new->version,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:23:25: note: expanded from macro 'FREAD_INT' #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-fopen.o `test -f 'fopen.c' || echo './'`fopen.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-reader.o `test -f 'reader.c' || echo './'`reader.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c 18 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-compress.o `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c compress-write.c:877:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] FREAD_UINTS(Buffer,3,fp); ^~~~~~~~~~~~~~~~~~~~~~~~ ./littleendian.h:26:29: note: expanded from macro 'FREAD_UINTS' #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp) ^~~~~ ~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-genome.o `test -f 'genome.c' || echo './'`genome.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-popcount.o `test -f 'popcount.c' || echo './'`popcount.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-genome_canonical.o `test -f 'genome_canonical.c' || echo './'`genome_canonical.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c 25 warnings generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c:1937:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] read(positions_fd,buffer,4); ^~~~ ~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-oligo.o `test -f 'oligo.c' || echo './'`oligo.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-block.o `test -f 'block.c' || echo './'`block.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-chrom.o `test -f 'chrom.c' || echo './'`chrom.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c 1 warning generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-gregion.o `test -f 'gregion.c' || echo './'`gregion.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-match.o `test -f 'match.c' || echo './'`match.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-stage1.o `test -f 'stage1.c' || echo './'`stage1.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-diag.o `test -f 'diag.c' || echo './'`diag.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-cmet.o `test -f 'cmet.c' || echo './'`cmet.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-atoi.o `test -f 'atoi.c' || echo './'`atoi.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-intron.o `test -f 'intron.c' || echo './'`intron.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-maxent.o `test -f 'maxent.c' || echo './'`maxent.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c oligoindex_hr.c:10010:16: error: use of undeclared identifier 'mod_37_bit_position' relpos = count_trailing_zeroes_32(diff_32); ^ oligoindex_hr.c:9901:40: note: expanded from macro 'count_trailing_zeroes_32' #define count_trailing_zeroes_32(diff) mod_37_bit_position[(-diff & diff) % 37] ^ oligoindex_hr.c:10175:16: error: use of undeclared identifier 'mod_37_bit_position' relpos = count_trailing_zeroes_32(diff_32); ^ oligoindex_hr.c:9901:40: note: expanded from macro 'count_trailing_zeroes_32' #define count_trailing_zeroes_32(diff) mod_37_bit_position[(-diff & diff) % 37] ^ oligoindex_hr.c:10411:16: error: use of undeclared identifier 'mod_37_bit_position' relpos = count_trailing_zeroes_32(diff_32); ^ oligoindex_hr.c:9901:40: note: expanded from macro 'count_trailing_zeroes_32' #define count_trailing_zeroes_32(diff) mod_37_bit_position[(-diff & diff) % 37] ^ 3 errors generated. gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_avx512-pair.o `test -f 'pair.c' || echo './'`pair.c make[3]: *** [Makefile:14753: gmap_avx512-oligoindex_hr.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: Leaving directory '/<>/src' make[2]: *** [Makefile:7172: all] Error 2 make[2]: Leaving directory '/<>/src' make[1]: *** [Makefile:400: all-recursive] Error 1 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j4 returned exit code 2 make: *** [debian/rules:18: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-10-26T21:42:28Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 146148 Build-Time: 98 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 4 Job: gmap_2021-08-25+ds-1 Machine Architecture: amd64 Package: gmap Package-Time: 125 Source-Version: 2021-08-25+ds-1 Space: 146148 Status: attempted Version: 2021-08-25+ds-1 -------------------------------------------------------------------------------- Finished at 2021-10-26T21:42:28Z Build needed 00:02:05, 146148k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 125.205040042s DC-Time-Estimation: 125.205040042 versus expected 329 (r/m: 1.6276897470711804 ; m: 125.205040042)