DC-Build-Header: adios 1.3-7 / Sun Sep 11 11:30:46 +0200 2011 Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-130.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ adios 1.3-7 (amd64) 11 Sep 2011 11:31 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: adios Version: 1.3-7 Source Version: 1.3-7 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (62.9 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... Need to get 914 kB of source archives. Get:1 http://localhost/debian/ sid/main adios 1.3-7 (dsc) [1796 B] Get:2 http://localhost/debian/ sid/main adios 1.3-7 (tar) [907 kB] Get:3 http://localhost/debian/ sid/main adios 1.3-7 (diff) [5115 B] Fetched 914 kB in 0s (5449 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/adios-kDAcBN/resolver-tdNZ25/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/700 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-8f173f2b-e20e-4076-b229-83fa1a26ea94/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.1.3~), libnetcdf-dev, gfortran, libhdf5-mpi-dev | libhdf5-dev, libmxml-dev, python-all-dev, mpi-default-dev, lustre-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.1.3~), libnetcdf-dev, gfortran, libhdf5-mpi-dev, libmxml-dev, python-all-dev, mpi-default-dev, lustre-dev dpkg-deb: building package `sbuild-build-depends-adios-dummy' in `/build/adios-kDAcBN/resolver-bB3vXF/apt_archive/sbuild-build-depends-adios-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install adios build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bsdmainutils ca-certificates debhelper file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcroco3 libcurl3-gnutls libdb4.8 libexpat1 libexpat1-dev libgcrypt11 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libnetcdf-dev libnetcdf6 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpcre3 libpipeline1 libpython2.6 libpython2.7 librtmp0 libsasl2-2 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 lustre-dev lustre-utils man-db mime-support mpi-default-dev openmpi-common openssl po-debconf python python-all python-all-dev python-dev python-minimal python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal zlib1g-dev Suggested packages: liblocale-gettext-perl wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff rng-tools gnutls-bin krb5-doc krb5-user libhdf5-doc netcdf-bin netcdf-doc www-browser libmail-box-perl python-doc python-tk python2.6-doc binfmt-support python2.7-doc Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info pkg-config libsasl2-modules libssl-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: adduser bsdmainutils ca-certificates debhelper file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcroco3 libcurl3-gnutls libdb4.8 libexpat1 libexpat1-dev libgcrypt11 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libnetcdf-dev libnetcdf6 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpcre3 libpipeline1 libpython2.6 libpython2.7 librtmp0 libsasl2-2 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 lustre-dev lustre-utils man-db mime-support mpi-default-dev openmpi-common openssl po-debconf python python-all python-all-dev python-dev python-minimal python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-adios-dummy zlib1g-dev 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 60.8 MB/60.8 MB of archives. After this operation, 206 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libssl1.0.0 libgpg-error0 libgcrypt11 libp11-kit0 libtasn1-3 libgnutls26 libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libidn11 libsasl2-2 libldap-2.4-2 libpcre3 librtmp0 openssl ca-certificates libcurl3-gnutls libgfortran3 libdb4.8 adduser bsdmainutils groff-base man-db libmagic1 file gettext-base libsqlite3-0 libxml2 mime-support python2.6-minimal libexpat1 python2.6 python-minimal python html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper gfortran-4.6 gfortran libexpat1-dev libjpeg8 libjpeg8-dev libmxml1 libmxml-dev libibverbs1 libnuma1 libtorque2 libopenmpi1.3 libhdf5-openmpi-1.8.4 libnetcdf6 libnetcdf-dev libpython2.6 python2.7-minimal python2.7 libpython2.7 zlib1g-dev libssl-dev lustre-utils lustre-dev python-all python2.6-dev python-dev python2.7-dev python-all-dev openmpi-common libibverbs-dev libopenmpi-dev libhdf5-openmpi-dev mpi-default-dev libhdf5-mpi-dev sbuild-build-depends-adios-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libssl1.0.0 amd64 1.0.0e-2 [1143 kB] Get:3 http://localhost/debian/ sid/main libgpg-error0 amd64 1.10-1 [66.6 kB] Get:4 http://localhost/debian/ sid/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:5 http://localhost/debian/ sid/main libp11-kit0 amd64 0.4-2 [45.2 kB] Get:6 http://localhost/debian/ sid/main libtasn1-3 amd64 2.9-4 [63.9 kB] Get:7 http://localhost/debian/ sid/main libgnutls26 amd64 2.12.10-1 [784 kB] Get:8 http://localhost/debian/ sid/main libkeyutils1 amd64 1.5.2-2 [8860 B] Get:9 http://localhost/debian/ sid/main libkrb5support0 amd64 1.9.1+dfsg-2 [47.1 kB] Get:10 http://localhost/debian/ sid/main libk5crypto3 amd64 1.9.1+dfsg-2 [111 kB] Get:11 http://localhost/debian/ sid/main libkrb5-3 amd64 1.9.1+dfsg-2 [381 kB] Get:12 http://localhost/debian/ sid/main libgssapi-krb5-2 amd64 1.9.1+dfsg-2 [147 kB] Get:13 http://localhost/debian/ sid/main libidn11 amd64 1.22-3 [165 kB] Get:14 http://localhost/debian/ sid/main libsasl2-2 amd64 2.1.24~rc1.dfsg1+cvs2011-05-23-6 [119 kB] Get:15 http://localhost/debian/ sid/main libldap-2.4-2 amd64 2.4.25-3 [235 kB] Get:16 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:17 http://localhost/debian/ sid/main librtmp0 amd64 2.4~20110711.gitc28f1bab-1 [61.4 kB] Get:18 http://localhost/debian/ sid/main openssl amd64 1.0.0e-2 [679 kB] Get:19 http://localhost/debian/ sid/main ca-certificates all 20110502+nmu1 [174 kB] Get:20 http://localhost/debian/ sid/main libcurl3-gnutls amd64 7.21.7-2 [298 kB] Get:21 http://localhost/debian/ sid/main libgfortran3 amd64 4.6.1-10 [358 kB] Get:22 http://localhost/debian/ sid/main libdb4.8 amd64 4.8.30-9 [694 kB] Get:23 http://localhost/debian/ sid/main adduser all 3.113 [218 kB] Get:24 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:25 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:26 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:27 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:28 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:29 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:30 http://localhost/debian/ sid/main libsqlite3-0 amd64 3.7.7-2 [420 kB] Get:31 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:32 http://localhost/debian/ sid/main mime-support all 3.51-1 [35.0 kB] Get:33 http://localhost/debian/ sid/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:34 http://localhost/debian/ sid/main libexpat1 amd64 2.0.1-7 [137 kB] Get:35 http://localhost/debian/ sid/main python2.6 amd64 2.6.7-4 [2483 kB] Get:36 http://localhost/debian/ sid/main python-minimal all 2.6.7-3 [39.2 kB] Get:37 http://localhost/debian/ sid/main python all 2.6.7-3 [177 kB] Get:38 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:39 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:40 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:41 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:42 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:43 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:44 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:45 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:46 http://localhost/debian/ sid/main gfortran-4.6 amd64 4.6.1-10 [5558 kB] Get:47 http://localhost/debian/ sid/main gfortran amd64 4:4.6.1-2 [1124 B] Get:48 http://localhost/debian/ sid/main libexpat1-dev amd64 2.0.1-7 [221 kB] Get:49 http://localhost/debian/ sid/main libjpeg8 amd64 8c-2 [132 kB] Get:50 http://localhost/debian/ sid/main libjpeg8-dev amd64 8c-2 [241 kB] Get:51 http://localhost/debian/ sid/main libmxml1 amd64 2.6-2 [28.0 kB] Get:52 http://localhost/debian/ sid/main libmxml-dev amd64 2.6-2 [62.3 kB] Get:53 http://localhost/debian/ sid/main libibverbs1 amd64 1.1.5-1 [35.0 kB] Get:54 http://localhost/debian/ sid/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:55 http://localhost/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:56 http://localhost/debian/ sid/main libopenmpi1.3 amd64 1.4.3-2.1 [1439 kB] Get:57 http://localhost/debian/ sid/main libhdf5-openmpi-1.8.4 amd64 1.8.4-patch1-3 [1366 kB] Get:58 http://localhost/debian/ sid/main libnetcdf6 amd64 1:4.1.1-5 [520 kB] Get:59 http://localhost/debian/ sid/main libnetcdf-dev amd64 1:4.1.1-5 [660 kB] Get:60 http://localhost/debian/ sid/main libpython2.6 amd64 2.6.7-4 [1087 kB] Get:61 http://localhost/debian/ sid/main python2.7-minimal amd64 2.7.2-5 [1673 kB] Get:62 http://localhost/debian/ sid/main python2.7 amd64 2.7.2-5 [2637 kB] Get:63 http://localhost/debian/ sid/main libpython2.7 amd64 2.7.2-5 [1177 kB] Get:64 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Get:65 http://localhost/debian/ sid/main libssl-dev amd64 1.0.0e-2 [1631 kB] Get:66 http://localhost/debian/ sid/main lustre-utils amd64 1.8.5+dfsg-2 [808 kB] Get:67 http://localhost/debian/ sid/main lustre-dev amd64 1.8.5+dfsg-2 [5907 kB] Get:68 http://localhost/debian/ sid/main python-all all 2.6.7-3 [870 B] Get:69 http://localhost/debian/ sid/main python2.6-dev amd64 2.6.7-4 [4832 kB] Get:70 http://localhost/debian/ sid/main python-dev all 2.6.7-3 [914 B] Get:71 http://localhost/debian/ sid/main python2.7-dev amd64 2.7.2-5 [5125 kB] Get:72 http://localhost/debian/ sid/main python-all-dev all 2.6.7-3 [888 B] Get:73 http://localhost/debian/ sid/main openmpi-common all 1.4.3-2.1 [92.2 kB] Get:74 http://localhost/debian/ sid/main libibverbs-dev amd64 1.1.5-1 [83.9 kB] Get:75 http://localhost/debian/ sid/main libopenmpi-dev amd64 1.4.3-2.1 [2790 kB] Get:76 http://localhost/debian/ sid/main libhdf5-openmpi-dev amd64 1.8.4-patch1-3 [2186 kB] Get:77 http://localhost/debian/ sid/main mpi-default-dev amd64 0.6 [3202 B] Get:78 http://localhost/debian/ sid/main libhdf5-mpi-dev amd64 1.8.4-patch1-3 [18.4 kB] Extracting templates from packages: 37% Extracting templates from packages: 75% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 60.8 MB in 1s (31.6 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libssl1.0.0. Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0e-2_amd64.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.10-1_amd64.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... Selecting previously deselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.4-2_amd64.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.9-4_amd64.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.12.10-1_amd64.deb) ... 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Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate certificate ca-certificates.crt WARNING: Skipping duplicate certificate ca-certificates.crt WARNING: Skipping duplicate certificate spi-cacert-2008.pem WARNING: Skipping duplicate certificate spi-cacert-2008.pem WARNING: Skipping duplicate certificate spi-ca-2003.pem WARNING: Skipping duplicate certificate spi-ca-2003.pem WARNING: Skipping duplicate certificate signet_tsa1_pem.pem WARNING: Skipping duplicate certificate signet_tsa1_pem.pem WARNING: Skipping duplicate certificate signet_rootca_pem.pem WARNING: Skipping duplicate certificate signet_rootca_pem.pem WARNING: Skipping duplicate certificate signet_pca3_pem.pem WARNING: Skipping duplicate certificate signet_pca3_pem.pem WARNING: Skipping duplicate certificate signet_pca2_pem.pem WARNING: Skipping duplicate certificate signet_pca2_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa3_pem.pem WARNING: Skipping duplicate certificate signet_ocspklasa3_pem.pem WARNING: Skipping duplicate 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Network_Solutions_Certificate_Authority.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libcurl3-gnutls (7.21.7-2) ... Setting up libgfortran3 (4.6.1-10) ... Setting up libdb4.8 (4.8.30-9) ... Setting up adduser (3.113) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libsqlite3-0 (3.7.7-2) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up mime-support (3.51-1) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up libexpat1 (2.0.1-7) ... Setting up python2.6 (2.6.7-4) ... Setting up python-minimal (2.6.7-3) ... Setting up python (2.6.7-3) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up gfortran-4.6 (4.6.1-10) ... Setting up gfortran (4:4.6.1-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libexpat1-dev (2.0.1-7) ... Setting up libjpeg8 (8c-2) ... Setting up libjpeg8-dev (8c-2) ... Setting up libmxml1 (2.6-2) ... Setting up libmxml-dev (2.6-2) ... Setting up libibverbs1 (1.1.5-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.3-2.1) ... Setting up libhdf5-openmpi-1.8.4 (1.8.4-patch1-3) ... Setting up libnetcdf6 (1:4.1.1-5) ... Setting up libnetcdf-dev (1:4.1.1-5) ... Setting up libpython2.6 (2.6.7-4) ... Setting up python2.7-minimal (2.7.2-5) ... Setting up python2.7 (2.7.2-5) ... Setting up libpython2.7 (2.7.2-5) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up libssl-dev (1.0.0e-2) ... Setting up lustre-utils (1.8.5+dfsg-2) ... Setting up lustre-dev (1.8.5+dfsg-2) ... Setting up python-all (2.6.7-3) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-dev (2.6.7-3) ... Setting up python2.7-dev (2.7.2-5) ... Setting up python-all-dev (2.6.7-3) ... Setting up openmpi-common (1.4.3-2.1) ... Setting up libibverbs-dev (1.1.5-1) ... Setting up libopenmpi-dev (1.4.3-2.1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up libhdf5-openmpi-dev (1.8.4-patch1-3) ... Setting up mpi-default-dev (0.6) ... Setting up libhdf5-mpi-dev (1.8.4-patch1-3) ... Setting up sbuild-build-depends-adios-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: adduser_3.113 apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-2 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgnutls26_2.12.10-1 libgomp1_4.6.1-10 libgpg-error0_1.10-1 libgssapi-krb5-2_1.9.1+dfsg-2 libhdf5-mpi-dev_1.8.4-patch1-3 libhdf5-openmpi-1.8.4_1.8.4-patch1-3 libhdf5-openmpi-dev_1.8.4-patch1-3 libibverbs-dev_1.1.5-1 libibverbs1_1.1.5-1 libidn11_1.22-3 libjpeg8_8c-2 libjpeg8-dev_8c-2 libk5crypto3_1.9.1+dfsg-2 libkeyutils1_1.5.2-2 libkrb5-3_1.9.1+dfsg-2 libkrb5support0_1.9.1+dfsg-2 libldap-2.4-2_2.4.25-3 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libmxml-dev_2.6-2 libmxml1_2.6-2 libncurses5_5.9-1 libncursesw5_5.9-1 libnetcdf-dev_1:4.1.1-5 libnetcdf6_1:4.1.1-5 libnuma1_2.0.5-1 libopenmpi-dev_1.4.3-2.1 libopenmpi1.3_1.4.3-2.1 libp11-kit0_0.4-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libpython2.6_2.6.7-4 libpython2.7_2.7.2-5 libquadmath0_4.6.1-10 libreadline6_6.2-4 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsqlite3-0_3.7.7-2 libss2_1.42~WIP-2011-07-02-1 libssl-dev_1.0.0e-2 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtasn1-3_2.9-4 libtimedate-perl_1.2000-1 libtorque2_2.4.16+dfsg-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lustre-dev_1.8.5+dfsg-2 lustre-utils_1.8.5+dfsg-2 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mime-support_3.51-1 mount_2.19.1-5 mpi-default-dev_0.6 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 openmpi-common_1.4.3-2.1 openssl_1.0.0e-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 python_2.6.7-3 python-all_2.6.7-3 python-all-dev_2.6.7-3 python-dev_2.6.7-3 python-minimal_2.6.7-3 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.2-5 python2.7-dev_2.7.2-5 python2.7-minimal_2.7.2-5 readline-common_6.2-4 sbuild-build-depends-adios-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Aug 25 19:54:26 2011 CEST using RSA key ID 5127742C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./adios_1.3-7.dsc dpkg-source: info: extracting adios in adios-1.3 dpkg-source: info: unpacking adios_1.3.orig.tar.gz dpkg-source: info: unpacking adios_1.3-7.debian.tar.gz dpkg-source: info: applying sh4.patch dpkg-source: info: applying mpi_in_place.patch dpkg-source: info: applying nompi_flag.patch Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package adios dpkg-buildpackage: source version 1.3-7 dpkg-source --before-build adios-1.3 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/adios-kDAcBN/adios-1.3' dh_clean find . -name '*.pyc' -delete make[1]: Leaving directory `/build/adios-kDAcBN/adios-1.3' dh_clean dpkg-source -b adios-1.3 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building adios using existing ./adios_1.3.orig.tar.gz dpkg-source: info: building adios in adios_1.3-7.debian.tar.gz dpkg-source: info: building adios in adios_1.3-7.dsc debian/rules build dh build --with python2 dh_testdir debian/rules override_dh_auto_configure make[1]: Entering directory `/build/adios-kDAcBN/adios-1.3' dh_auto_configure -- --with-lustre=/usr --enable-shared --prefix=`pwd`/debian/tmp MPIFC=mpif77 CC=mpicc checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... mpicc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ANSI C... none needed checking dependency style of mpicc... none checking how to run the C preprocessor... mpicc -E checking for egrep... grep -E checking for preprocessor stringizing operator... yes checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ANSI C... (cached) none needed checking dependency style of mpicc... (cached) none checking whether mpicc and cc understand -c and -o together... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for mpicc... mpicc checking for MPI_Init... yes checking for mpi.h... yes checking for mpic++... mpic++ checking for mpi.h... yes checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking whether f95 understands -c and -o together... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lgcc_s -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for mpif90... mpif77 checking for mpif.h... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether f95 accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fPIC checking if mpicc PIC flag -fPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f95 option to produce PIC... -fPIC checking if f95 PIC flag -fPIC works... yes checking if f95 static flag -static works... yes checking if f95 supports -c -o file.o... yes checking whether the f95 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... mpicc checking mxml.h usability... yes checking mxml.h presence... yes checking for mxml.h... yes checking if mxml code can be linked... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes checking for library containing ibv_alloc_pd... -libverbs checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking portals/portals3.h usability... no checking portals/portals3.h presence... no checking for portals/portals3.h... no checking for p3nal_utcp.h... no checking for p3rt/p3rt.h... no configure: === checking for HDF5 === configure: === checking for Parallel HDF5 === checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking if phdf5 code can be compiled... yes configure: === checking for NetCDF === checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking if netcdf code can be compiled... yes configure: === checking NetCDF 4 Parallel === checking for netcdf.h... (cached) yes checking if nc4 parallel code can be compiled... yes checking Attributes.h usability... no checking Attributes.h presence... no checking for Attributes.h... no checking nssi_client.h usability... no checking nssi_client.h presence... no checking for nssi_client.h... no checking dart.h usability... no checking dart.h presence... no checking for dart.h... no checking dimes.h usability... no checking dimes.h presence... no checking for dimes.h... no checking dmalloc.h usability... no checking dmalloc.h presence... no checking for dmalloc.h... no configure: === checking for Lustre === checking for csh... no checking for cygpath... echo Datatap dependency check failed configure: Use PHDF5 for sequential HDF5 tools #### Defined USE_PARALLEL_COMPILER to = [] configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating tests/C/Makefile config.status: creating tests/Fortran/Makefile config.status: creating tests/genarray/Makefile config.status: creating tests/bp_read/Makefile config.status: creating tests/suite/Makefile config.status: creating tests/suite/programs/Makefile config.status: creating utils/Makefile config.status: creating utils/adios_lint/Makefile config.status: creating utils/gpp/Makefile config.status: creating utils/bpdump/Makefile config.status: creating utils/bp2h5/Makefile config.status: creating utils/bp2ncd/Makefile config.status: creating utils/bp2ascii/Makefile config.status: creating utils/bpsplit/Makefile config.status: creating utils/bpls/Makefile config.status: creating utils/bp2bp/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/C/scalars/Makefile config.status: creating examples/C/arrays/Makefile config.status: creating examples/C/attributes/Makefile config.status: creating examples/C/manual/Makefile config.status: creating examples/C/global-array/Makefile config.status: creating examples/C/global-array-time/Makefile config.status: creating examples/C/stat/Makefile config.status: creating examples/C/read_all/Makefile config.status: creating examples/Fortran/Makefile config.status: creating examples/Fortran/scalars/Makefile config.status: creating examples/Fortran/arrays/Makefile config.status: creating examples/Fortran/global-array/Makefile config.status: creating examples/Fortran/global-array-time/Makefile config.status: creating adios_config.flags config.status: creating config.h config.status: executing depfiles commands ********************************* adios configured as follows: ********************************* - General Compile FLAGS - CC = mpicc - CXX = g++ - FC = f95 - CPPFLAGS = - CFLAGS = -g -O2 - CXXFLAGS = -g -O2 - FCFLAGS = -g -O2 - LDLAGS = - LIBS = - MPICC = mpicc - MPICXX = mpic++ - MPIFC = mpif77 - MPILIBS = - No research transport methods - MXML - MXML_CFLAGS = - MXML_CPPFLAGS = - MXML_LDFLAGS = - MXML_LIBS = -lmxml - LUSTRE - LUSTRE_CFLAGS = - LUSTRE_CPPFLAGS = -I/usr/include - LUSTRE_LDFLAGS = -L/usr/lib - LUSTRE_LIBS = -llustreapi - No Portals - INFINIBAND - INFINIBAND_CFLAGS = - INFINIBAND_CPPFLAGS = - INFINIBAND_LDFLAGS = - INFINIBAND_LIBS = -libverbs - No DataTap transport - No DART to build DART transport method - No DIMES to build DIMES transport method - PHDF5 - PHDF5_CFLAGS = - PHDF5_CPPFLAGS = - PHDF5_LDFLAGS = - PHDF5_LIBS = -lhdf5_hl -lhdf5 -lz - HDF5 - HDF5_CFLAGS = - HDF5_CPPFLAGS = - HDF5_LDFLAGS = - HDF5_LIBS = -lhdf5_hl -lhdf5 -lz - NetCDF 4 Parallel - NC4PAR_CFLAGS = - NC4PAR_CPPFLAGS = - NC4PAR_LDFLAGS = - NC4PAR_LIBS = -lnetcdf - NetCDF - NETCDF_CFLAGS = - NETCDF_CPPFLAGS = - NETCDF_LDFLAGS = - NETCDF_LIBS = -lnetcdf - No NSSI - SVN version = unknown - Install path = /build/adios-kDAcBN/adios-1.3/debian/tmp make[1]: Leaving directory `/build/adios-kDAcBN/adios-1.3' dh_auto_build make[1]: Entering directory `/build/adios-kDAcBN/adios-1.3' make all-recursive make[2]: Entering directory `/build/adios-kDAcBN/adios-1.3' Making all in src make[3]: Entering directory `/build/adios-kDAcBN/adios-1.3/src' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios.o `test -f 'adios.c' || echo './'`adios.c adios.c:205:58: warning: conversion specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "cannot allocate %lld bytes to copy " ~~~^ %lu adios.c:221:58: warning: conversion specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "cannot allocate %lld bytes to copy " ~~~^ %lu adios.c:244:9: warning: implicit declaration of function 'adios_copy_var_written' is invalid in C99 [-Wimplicit-function-declaration] adios_copy_var_written (&fd->group->vars_written, v, fd); ^ 3 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-common_adios.o `test -f 'common_adios.c' || echo './'`common_adios.c common_adios.c:192:37: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "needs: %llu available: %llu.\n" ~~~^ %lu common_adios.c:192:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "needs: %llu available: %llu.\n" ~~~^ %lu common_adios.c:239:50: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Cannot allocate %llu bytes for buffered output.\n", ~~~^ %lu 3 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_transport_hooks.o `test -f 'adios_transport_hooks.c' || echo './'`adios_transport_hooks.c mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_mpi.o `test -f 'adios_mpi.c' || echo './'`adios_mpi.c adios_mpi.c:1184:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "a:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1286:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "b:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1343:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "c:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1396:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_mpi.c:1417:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_mpi.c:1640:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1708:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1770:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:2079:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:2143:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:2206:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu 11 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_mpi_lustre.o `test -f 'adios_mpi_lustre.c' || echo './'`adios_mpi_lustre.c adios_mpi_lustre.c:234:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_lustre.c:245:10: warning: implicit declaration of function 'llapi_lov_get_uuids' is invalid in C99 [-Wimplicit-function-declaration] rc = llapi_lov_get_uuids(fd, uuids, &num_ost); ^ adios_mpi_lustre.c:260:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:260:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_lustre.c:260:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_lustre.c:281:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:281:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_lustre.c:281:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_lustre.c:299:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_offset")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:299:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_offset")) ^ == adios_mpi_lustre.c:299:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_offset")) ^ ( ) adios_mpi_lustre.c:317:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:317:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == adios_mpi_lustre.c:317:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:364:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:364:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == adios_mpi_lustre.c:364:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:1357:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "a:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1358:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1425:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "b:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1426:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1450:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "c:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1451:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1499:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_mpi_lustre.c:1520:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_mpi_lustre.c:1706:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1707:51: warning: conversion specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %d\n" ~^ %lu adios_mpi_lustre.c:1740:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1741:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1768:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1769:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1971:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1972:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:2002:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:2003:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:2030:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:2031:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu 27 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_mpi_amr.o `test -f 'adios_mpi_amr.c' || echo './'`adios_mpi_amr.c adios_mpi_amr.c:239:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:239:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_amr.c:239:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_amr.c:257:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:257:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_amr.c:257:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_amr.c:274:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_amr.c:346:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_ost")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:346:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_ost")) ^ == adios_mpi_amr.c:346:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_ost")) ^ ( ) adios_mpi_amr.c:363:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_aggregators")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:363:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_aggregators")) ^ == adios_mpi_amr.c:363:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_aggregators")) ^ ( ) adios_mpi_amr.c:388:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "threading")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:388:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "threading")) ^ == adios_mpi_amr.c:388:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "threading")) ^ ( ) adios_mpi_amr.c:409:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "osts_to_skip")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:409:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "osts_to_skip")) ^ == adios_mpi_amr.c:409:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "osts_to_skip")) ^ ( ) adios_mpi_amr.c:424:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "aggregation_type")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:424:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "aggregation_type")) ^ == adios_mpi_amr.c:424:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "aggregation_type")) ^ ( ) adios_mpi_amr.c:509:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'unsigned long' [-Wformat] "Requested: %llu\n", *buffer_offset + size + 1000); ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu adios_mpi_amr.c:740:5: warning: implicit declaration of function 'mkdir' is invalid in C99 [-Wimplicit-function-declaration] mkdir (dir_name, S_IRWXU | S_IRWXG); ^ adios_mpi_amr.c:1052:22: warning: implicit declaration of function 'llapi_lov_get_uuids' is invalid in C99 [-Wimplicit-function-declaration] rc = llapi_lov_get_uuids(f, uuids, &md->g_num_ost); ^ adios_mpi_amr.c:1078:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (ch = strrchr (fd->name, '/')) ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:1078:20: note: use '==' to turn this assignment into an equality comparison if (ch = strrchr (fd->name, '/')) ^ == adios_mpi_amr.c:1078:20: note: place parentheses around the assignment to silence this warning if (ch = strrchr (fd->name, '/')) ^ ( ) adios_mpi_amr.c:1438:66: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "a:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1439:49: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:1548:66: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "b:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1549:49: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:1613:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_mpi_amr.c:1634:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_mpi_amr.c:1842:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1843:55: warning: conversion specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %d\n" ~^ %lu adios_mpi_amr.c:1913:78: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1914:61: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:1962:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1963:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:2015:93: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] fprintf (stderr, "Warning: The max allowed aggregation buffer is %llu bytes.\n" ~~~^ %d adios_mpi_amr.c:2016:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] "But this ADIOS method needs extra %llu bytes for aggregation\n" ~~~^ %d adios_mpi_amr.c:2033:84: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] fprintf (stderr, "The max allowed aggregation buffer is %llu.\n" ~~~^ %d adios_mpi_amr.c:2255:17: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&buffer, &buffer_size, &buffer_offset, flag); ^ adios_mpi_amr.c:1792:13: warning: enumeration value 'adios_mode_update' not handled in switch [-Wswitch-enum] switch (fd->mode) ^ adios_mpi_amr.c:2532:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:2533:55: warning: conversion specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %d\n" ~^ %lu adios_mpi_amr.c:2603:78: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:2604:61: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:2652:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:2653:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:2701:84: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] fprintf (stderr, "The max allowed aggregation buffer is %llu.\n" ~~~^ %d adios_mpi_amr.c:3416:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:3417:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:3447:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:3448:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:3475:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:3476:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu 42 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_posix.o `test -f 'adios_posix.c' || echo './'`adios_posix.c adios_posix.c:525:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:526:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:583:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:584:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:632:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:633:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:674:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_posix.c:695:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_posix.c:934:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:935:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:962:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:963:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:986:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:987:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1092:21: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&global_index_buffer ^ adios_posix.c:1100:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1101:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1148:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1149:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1173:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1174:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1197:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1198:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1278:21: warning: implicit declaration of function 'adios_sort_index_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_sort_index_v1 (&p->old_pg_root ^ adios_posix.c:1313:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1314:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu, Mode: a\n" ~~~^ %ld 26 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_posix1.o `test -f 'adios_posix1.c' || echo './'`adios_posix1.c adios_posix1.c:253:63: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:254:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:311:63: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:312:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:360:63: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:361:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:402:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_posix1.c:423:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_posix1.c:662:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:663:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:690:75: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:691:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:714:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:715:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:766:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:767:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:791:75: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:792:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:815:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:816:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld 20 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_internals.o `test -f 'adios_internals.c' || echo './'`adios_internals.c adios_internals.c:605:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_long', 'adios_real'... [-Wswitch-enum] switch (type) ^ adios_internals.c:697:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_byte', 'adios_short'... [-Wswitch-enum] switch (type) ^ adios_internals.c:1658:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'unsigned long' [-Wformat] "Requested: %llu\n", *buffer_offset + size + 1000); ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu adios_internals.c:2448:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (type) ^ adios_internals.c:2595:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (var->type) ^ adios_internals.c:2788:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (v->type) ^ adios_internals.c:3206:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (vars_root->type) ^ adios_internals.c:3904:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (v->type) ^ adios_internals.c:4046:9: error: non-void function 'adios_generate_var_characteristics_v1' should return a value [-Wreturn-type] return ; ^ 8 warnings and 1 error generated. make[3]: *** [libadios_a-adios_internals.o] Error 1 make[3]: Leaving directory `/build/adios-kDAcBN/adios-1.3/src' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/build/adios-kDAcBN/adios-1.3' make[1]: *** [all] Error 2 make[1]: Leaving directory `/build/adios-kDAcBN/adios-1.3' dh_auto_build: make -j1 returned exit code 2 make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1131 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-8f173f2b-e20e-4076-b229-83fa1a26ea94/build/adios-kDAcBN Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 8992 Build-Time: 13 Distribution: lsid64c Fail-Stage: build Install-Time: 16 Job: adios_1.3-7 Package: adios Package-Time: 39 Source-Version: 1.3-7 Space: 8992 Status: attempted Version: 1.3-7 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1131 Build needed 00:00:39, 8992k disc space DC-Message: Failed, but took only 69.442284. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-130.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ adios 1.3-7 (amd64) 11 Sep 2011 11:53 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: adios Version: 1.3-7 Source Version: 1.3-7 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (64.2 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... Need to get 914 kB of source archives. Get:1 http://localhost/debian/ sid/main adios 1.3-7 (dsc) [1796 B] Get:2 http://localhost/debian/ sid/main adios 1.3-7 (tar) [907 kB] Get:3 http://localhost/debian/ sid/main adios 1.3-7 (diff) [5115 B] Fetched 914 kB in 0s (43.9 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/adios-wLJMxb/resolver-SP45BP/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-d4fb166f-7749-4752-b174-c7405487d7a4/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.1.3~), libnetcdf-dev, gfortran, libhdf5-mpi-dev | libhdf5-dev, libmxml-dev, python-all-dev, mpi-default-dev, lustre-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.1.3~), libnetcdf-dev, gfortran, libhdf5-mpi-dev, libmxml-dev, python-all-dev, mpi-default-dev, lustre-dev dpkg-deb: building package `sbuild-build-depends-adios-dummy' in `/build/adios-wLJMxb/resolver-1ycQYl/apt_archive/sbuild-build-depends-adios-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install adios build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bsdmainutils ca-certificates debhelper file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcroco3 libcurl3-gnutls libdb4.8 libexpat1 libexpat1-dev libgcrypt11 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libnetcdf-dev libnetcdf6 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpcre3 libpipeline1 libpython2.6 libpython2.7 librtmp0 libsasl2-2 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 lustre-dev lustre-utils man-db mime-support mpi-default-dev openmpi-common openssl po-debconf python python-all python-all-dev python-dev python-minimal python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal zlib1g-dev Suggested packages: liblocale-gettext-perl wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff rng-tools gnutls-bin krb5-doc krb5-user libhdf5-doc netcdf-bin netcdf-doc www-browser libmail-box-perl python-doc python-tk python2.6-doc binfmt-support python2.7-doc Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info pkg-config libsasl2-modules libssl-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: adduser bsdmainutils ca-certificates debhelper file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcroco3 libcurl3-gnutls libdb4.8 libexpat1 libexpat1-dev libgcrypt11 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libnetcdf-dev libnetcdf6 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpcre3 libpipeline1 libpython2.6 libpython2.7 librtmp0 libsasl2-2 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 lustre-dev lustre-utils man-db mime-support mpi-default-dev openmpi-common openssl po-debconf python python-all python-all-dev python-dev python-minimal python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-adios-dummy zlib1g-dev 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 60.8 MB/60.8 MB of archives. After this operation, 206 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libssl1.0.0 libgpg-error0 libgcrypt11 libp11-kit0 libtasn1-3 libgnutls26 libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libidn11 libsasl2-2 libldap-2.4-2 libpcre3 librtmp0 openssl ca-certificates libcurl3-gnutls libgfortran3 libdb4.8 adduser bsdmainutils groff-base man-db libmagic1 file gettext-base libsqlite3-0 libxml2 mime-support python2.6-minimal libexpat1 python2.6 python-minimal python html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper gfortran-4.6 gfortran libexpat1-dev libjpeg8 libjpeg8-dev libmxml1 libmxml-dev libibverbs1 libnuma1 libtorque2 libopenmpi1.3 libhdf5-openmpi-1.8.4 libnetcdf6 libnetcdf-dev libpython2.6 python2.7-minimal python2.7 libpython2.7 zlib1g-dev libssl-dev lustre-utils lustre-dev python-all python2.6-dev python-dev python2.7-dev python-all-dev openmpi-common libibverbs-dev libopenmpi-dev libhdf5-openmpi-dev mpi-default-dev libhdf5-mpi-dev sbuild-build-depends-adios-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libssl1.0.0 amd64 1.0.0e-2 [1143 kB] Get:3 http://localhost/debian/ sid/main libgpg-error0 amd64 1.10-1 [66.6 kB] Get:4 http://localhost/debian/ sid/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:5 http://localhost/debian/ sid/main libp11-kit0 amd64 0.4-2 [45.2 kB] Get:6 http://localhost/debian/ sid/main libtasn1-3 amd64 2.9-4 [63.9 kB] Get:7 http://localhost/debian/ sid/main libgnutls26 amd64 2.12.10-1 [784 kB] Get:8 http://localhost/debian/ sid/main libkeyutils1 amd64 1.5.2-2 [8860 B] Get:9 http://localhost/debian/ sid/main libkrb5support0 amd64 1.9.1+dfsg-2 [47.1 kB] Get:10 http://localhost/debian/ sid/main libk5crypto3 amd64 1.9.1+dfsg-2 [111 kB] Get:11 http://localhost/debian/ sid/main libkrb5-3 amd64 1.9.1+dfsg-2 [381 kB] Get:12 http://localhost/debian/ sid/main libgssapi-krb5-2 amd64 1.9.1+dfsg-2 [147 kB] Get:13 http://localhost/debian/ sid/main libidn11 amd64 1.22-3 [165 kB] Get:14 http://localhost/debian/ sid/main libsasl2-2 amd64 2.1.24~rc1.dfsg1+cvs2011-05-23-6 [119 kB] Get:15 http://localhost/debian/ sid/main libldap-2.4-2 amd64 2.4.25-3 [235 kB] Get:16 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:17 http://localhost/debian/ sid/main librtmp0 amd64 2.4~20110711.gitc28f1bab-1 [61.4 kB] Get:18 http://localhost/debian/ sid/main openssl amd64 1.0.0e-2 [679 kB] Get:19 http://localhost/debian/ sid/main ca-certificates all 20110502+nmu1 [174 kB] Get:20 http://localhost/debian/ sid/main libcurl3-gnutls amd64 7.21.7-2 [298 kB] Get:21 http://localhost/debian/ sid/main libgfortran3 amd64 4.6.1-10 [358 kB] Get:22 http://localhost/debian/ sid/main libdb4.8 amd64 4.8.30-9 [694 kB] Get:23 http://localhost/debian/ sid/main adduser all 3.113 [218 kB] Get:24 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:25 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:26 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:27 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:28 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:29 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:30 http://localhost/debian/ sid/main libsqlite3-0 amd64 3.7.7-2 [420 kB] Get:31 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:32 http://localhost/debian/ sid/main mime-support all 3.51-1 [35.0 kB] Get:33 http://localhost/debian/ sid/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:34 http://localhost/debian/ sid/main libexpat1 amd64 2.0.1-7 [137 kB] Get:35 http://localhost/debian/ sid/main python2.6 amd64 2.6.7-4 [2483 kB] Get:36 http://localhost/debian/ sid/main python-minimal all 2.6.7-3 [39.2 kB] Get:37 http://localhost/debian/ sid/main python all 2.6.7-3 [177 kB] Get:38 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:39 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:40 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:41 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:42 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:43 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:44 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:45 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:46 http://localhost/debian/ sid/main gfortran-4.6 amd64 4.6.1-10 [5558 kB] Get:47 http://localhost/debian/ sid/main gfortran amd64 4:4.6.1-2 [1124 B] Get:48 http://localhost/debian/ sid/main libexpat1-dev amd64 2.0.1-7 [221 kB] Get:49 http://localhost/debian/ sid/main libjpeg8 amd64 8c-2 [132 kB] Get:50 http://localhost/debian/ sid/main libjpeg8-dev amd64 8c-2 [241 kB] Get:51 http://localhost/debian/ sid/main libmxml1 amd64 2.6-2 [28.0 kB] Get:52 http://localhost/debian/ sid/main libmxml-dev amd64 2.6-2 [62.3 kB] Get:53 http://localhost/debian/ sid/main libibverbs1 amd64 1.1.5-1 [35.0 kB] Get:54 http://localhost/debian/ sid/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:55 http://localhost/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:56 http://localhost/debian/ sid/main libopenmpi1.3 amd64 1.4.3-2.1 [1439 kB] Get:57 http://localhost/debian/ sid/main libhdf5-openmpi-1.8.4 amd64 1.8.4-patch1-3 [1366 kB] Get:58 http://localhost/debian/ sid/main libnetcdf6 amd64 1:4.1.1-5 [520 kB] Get:59 http://localhost/debian/ sid/main libnetcdf-dev amd64 1:4.1.1-5 [660 kB] Get:60 http://localhost/debian/ sid/main libpython2.6 amd64 2.6.7-4 [1087 kB] Get:61 http://localhost/debian/ sid/main python2.7-minimal amd64 2.7.2-5 [1673 kB] Get:62 http://localhost/debian/ sid/main python2.7 amd64 2.7.2-5 [2637 kB] Get:63 http://localhost/debian/ sid/main libpython2.7 amd64 2.7.2-5 [1177 kB] Get:64 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Get:65 http://localhost/debian/ sid/main libssl-dev amd64 1.0.0e-2 [1631 kB] Get:66 http://localhost/debian/ sid/main lustre-utils amd64 1.8.5+dfsg-2 [808 kB] Get:67 http://localhost/debian/ sid/main lustre-dev amd64 1.8.5+dfsg-2 [5907 kB] Get:68 http://localhost/debian/ sid/main python-all all 2.6.7-3 [870 B] Get:69 http://localhost/debian/ sid/main python2.6-dev amd64 2.6.7-4 [4832 kB] Get:70 http://localhost/debian/ sid/main python-dev all 2.6.7-3 [914 B] Get:71 http://localhost/debian/ sid/main python2.7-dev amd64 2.7.2-5 [5125 kB] Get:72 http://localhost/debian/ sid/main python-all-dev all 2.6.7-3 [888 B] Get:73 http://localhost/debian/ sid/main openmpi-common all 1.4.3-2.1 [92.2 kB] Get:74 http://localhost/debian/ sid/main libibverbs-dev amd64 1.1.5-1 [83.9 kB] Get:75 http://localhost/debian/ sid/main libopenmpi-dev amd64 1.4.3-2.1 [2790 kB] Get:76 http://localhost/debian/ sid/main libhdf5-openmpi-dev amd64 1.8.4-patch1-3 [2186 kB] Get:77 http://localhost/debian/ sid/main mpi-default-dev amd64 0.6 [3202 B] Get:78 http://localhost/debian/ sid/main libhdf5-mpi-dev amd64 1.8.4-patch1-3 [18.4 kB] Extracting templates from packages: 37% Extracting templates from packages: 75% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 60.8 MB in 0s (63.0 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libssl1.0.0. Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0e-2_amd64.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.10-1_amd64.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... Selecting previously deselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.4-2_amd64.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.9-4_amd64.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.12.10-1_amd64.deb) ... 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Updating certificates in /etc/ssl/certs... 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Network_Solutions_Certificate_Authority.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Qualified_=Class_QA=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Notary_=Class_A=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Express_=Class_C=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Business_=Class_B=_Root.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA_2009.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Microsec_e-Szigno_Root_CA.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Juur-SK.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate Izenpe.com.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate IGC_A.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Hongkong_Post_Root_CA_1.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Go_Daddy_Class_2_CA.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate Global_Chambersign_Root_-_2008.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R3.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA_-_R2.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GlobalSign_Root_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Universal_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G3.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority_-_G2.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Primary_Certification_Authority.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA_2.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GeoTrust_Global_CA.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate GTE_CyberTrust_Global_Root.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Firmaprofesional_Root_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_2.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_eBusiness_CA_1.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_Global_eBusiness_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Equifax_Secure_CA.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust_Root_Certification_Authority.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate Entrust.net_Premium_2048_Secure_Server_CA.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_3.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate Digital_Signature_Trust_Co._Global_CA_1.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_High_Assurance_EV_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Global_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate DigiCert_Assured_ID_Root_CA.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate Deutsche_Telekom_Root_CA_2.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_Root_CA_X3.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate DST_ACES_CA_X6.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Cybertrust_Global_Root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Trusted_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_Secure_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate Comodo_AAA_Services_root.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_Secured_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate ComSign_CA.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Chambers_of_Commerce_Root_-_2008.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certum_Root_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certplus_Class_2_Primary_CA.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Certigna.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Global_Chambersign_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate Camerfirma_Chambers_of_Commerce_Root.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_ECC_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate COMODO_Certification_Authority.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CNNIC_ROOT.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate CA_Disig.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_3_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Buypass_Class_2_CA_1.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Baltimore_CyberTrust_Root.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate ApplicationCA_-_Japanese_Government.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate America_Online_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Qualified_Certificates_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Public_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_Low-Value_Services_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AddTrust_External_Root.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_2.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AOL_Time_Warner_Root_Certification_Authority_1.pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate AC_Raíz_Certicámara_S.A..pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate ACEDICOM_Root.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate cert_igca_dsa.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate ca.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate cacert.org.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem WARNING: Skipping duplicate certificate brasil.gov.br.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libcurl3-gnutls (7.21.7-2) ... Setting up libgfortran3 (4.6.1-10) ... Setting up libdb4.8 (4.8.30-9) ... Setting up adduser (3.113) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libsqlite3-0 (3.7.7-2) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up mime-support (3.51-1) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up libexpat1 (2.0.1-7) ... Setting up python2.6 (2.6.7-4) ... Setting up python-minimal (2.6.7-3) ... Setting up python (2.6.7-3) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up gfortran-4.6 (4.6.1-10) ... Setting up gfortran (4:4.6.1-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libexpat1-dev (2.0.1-7) ... Setting up libjpeg8 (8c-2) ... Setting up libjpeg8-dev (8c-2) ... Setting up libmxml1 (2.6-2) ... Setting up libmxml-dev (2.6-2) ... Setting up libibverbs1 (1.1.5-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.3-2.1) ... Setting up libhdf5-openmpi-1.8.4 (1.8.4-patch1-3) ... Setting up libnetcdf6 (1:4.1.1-5) ... Setting up libnetcdf-dev (1:4.1.1-5) ... Setting up libpython2.6 (2.6.7-4) ... Setting up python2.7-minimal (2.7.2-5) ... Setting up python2.7 (2.7.2-5) ... Setting up libpython2.7 (2.7.2-5) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up libssl-dev (1.0.0e-2) ... Setting up lustre-utils (1.8.5+dfsg-2) ... Setting up lustre-dev (1.8.5+dfsg-2) ... Setting up python-all (2.6.7-3) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-dev (2.6.7-3) ... Setting up python2.7-dev (2.7.2-5) ... Setting up python-all-dev (2.6.7-3) ... Setting up openmpi-common (1.4.3-2.1) ... Setting up libibverbs-dev (1.1.5-1) ... Setting up libopenmpi-dev (1.4.3-2.1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up libhdf5-openmpi-dev (1.8.4-patch1-3) ... Setting up mpi-default-dev (0.6) ... Setting up libhdf5-mpi-dev (1.8.4-patch1-3) ... Setting up sbuild-build-depends-adios-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: adduser_3.113 apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-2 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgnutls26_2.12.10-1 libgomp1_4.6.1-10 libgpg-error0_1.10-1 libgssapi-krb5-2_1.9.1+dfsg-2 libhdf5-mpi-dev_1.8.4-patch1-3 libhdf5-openmpi-1.8.4_1.8.4-patch1-3 libhdf5-openmpi-dev_1.8.4-patch1-3 libibverbs-dev_1.1.5-1 libibverbs1_1.1.5-1 libidn11_1.22-3 libjpeg8_8c-2 libjpeg8-dev_8c-2 libk5crypto3_1.9.1+dfsg-2 libkeyutils1_1.5.2-2 libkrb5-3_1.9.1+dfsg-2 libkrb5support0_1.9.1+dfsg-2 libldap-2.4-2_2.4.25-3 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libmxml-dev_2.6-2 libmxml1_2.6-2 libncurses5_5.9-1 libncursesw5_5.9-1 libnetcdf-dev_1:4.1.1-5 libnetcdf6_1:4.1.1-5 libnuma1_2.0.5-1 libopenmpi-dev_1.4.3-2.1 libopenmpi1.3_1.4.3-2.1 libp11-kit0_0.4-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libpython2.6_2.6.7-4 libpython2.7_2.7.2-5 libquadmath0_4.6.1-10 libreadline6_6.2-4 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsqlite3-0_3.7.7-2 libss2_1.42~WIP-2011-07-02-1 libssl-dev_1.0.0e-2 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtasn1-3_2.9-4 libtimedate-perl_1.2000-1 libtorque2_2.4.16+dfsg-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lustre-dev_1.8.5+dfsg-2 lustre-utils_1.8.5+dfsg-2 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mime-support_3.51-1 mount_2.19.1-5 mpi-default-dev_0.6 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 openmpi-common_1.4.3-2.1 openssl_1.0.0e-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 python_2.6.7-3 python-all_2.6.7-3 python-all-dev_2.6.7-3 python-dev_2.6.7-3 python-minimal_2.6.7-3 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.2-5 python2.7-dev_2.7.2-5 python2.7-minimal_2.7.2-5 readline-common_6.2-4 sbuild-build-depends-adios-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Aug 25 19:54:26 2011 CEST using RSA key ID 5127742C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./adios_1.3-7.dsc dpkg-source: info: extracting adios in adios-1.3 dpkg-source: info: unpacking adios_1.3.orig.tar.gz dpkg-source: info: unpacking adios_1.3-7.debian.tar.gz dpkg-source: info: applying sh4.patch dpkg-source: info: applying mpi_in_place.patch dpkg-source: info: applying nompi_flag.patch Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package adios dpkg-buildpackage: source version 1.3-7 dpkg-source --before-build adios-1.3 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/adios-wLJMxb/adios-1.3' dh_clean find . -name '*.pyc' -delete make[1]: Leaving directory `/build/adios-wLJMxb/adios-1.3' dh_clean dpkg-source -b adios-1.3 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building adios using existing ./adios_1.3.orig.tar.gz dpkg-source: info: building adios in adios_1.3-7.debian.tar.gz dpkg-source: info: building adios in adios_1.3-7.dsc debian/rules build dh build --with python2 dh_testdir debian/rules override_dh_auto_configure make[1]: Entering directory `/build/adios-wLJMxb/adios-1.3' dh_auto_configure -- --with-lustre=/usr --enable-shared --prefix=`pwd`/debian/tmp MPIFC=mpif77 CC=mpicc checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... mpicc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ANSI C... none needed checking dependency style of mpicc... none checking how to run the C preprocessor... mpicc -E checking for egrep... grep -E checking for preprocessor stringizing operator... yes checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ANSI C... (cached) none needed checking dependency style of mpicc... (cached) none checking whether mpicc and cc understand -c and -o together... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for mpicc... mpicc checking for MPI_Init... yes checking for mpi.h... yes checking for mpic++... mpic++ checking for mpi.h... yes checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking whether f95 understands -c and -o together... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../.. -lgfortran -lm -lgcc_s -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for mpif90... mpif77 checking for mpif.h... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether f95 accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fPIC checking if mpicc PIC flag -fPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f95 option to produce PIC... -fPIC checking if f95 PIC flag -fPIC works... yes checking if f95 static flag -static works... yes checking if f95 supports -c -o file.o... yes checking whether the f95 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... mpicc checking mxml.h usability... yes checking mxml.h presence... yes checking for mxml.h... yes checking if mxml code can be linked... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes checking for library containing ibv_alloc_pd... -libverbs checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking portals/portals3.h usability... no checking portals/portals3.h presence... no checking for portals/portals3.h... no checking for p3nal_utcp.h... no checking for p3rt/p3rt.h... no configure: === checking for HDF5 === configure: === checking for Parallel HDF5 === checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking if phdf5 code can be compiled... yes configure: === checking for NetCDF === checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking if netcdf code can be compiled... yes configure: === checking NetCDF 4 Parallel === checking for netcdf.h... (cached) yes checking if nc4 parallel code can be compiled... yes checking Attributes.h usability... no checking Attributes.h presence... no checking for Attributes.h... no checking nssi_client.h usability... no checking nssi_client.h presence... no checking for nssi_client.h... no checking dart.h usability... no checking dart.h presence... no checking for dart.h... no checking dimes.h usability... no checking dimes.h presence... no checking for dimes.h... no checking dmalloc.h usability... no checking dmalloc.h presence... no checking for dmalloc.h... no configure: === checking for Lustre === checking for csh... no checking for cygpath... echo Datatap dependency check failed configure: Use PHDF5 for sequential HDF5 tools #### Defined USE_PARALLEL_COMPILER to = [] configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating tests/C/Makefile config.status: creating tests/Fortran/Makefile config.status: creating tests/genarray/Makefile config.status: creating tests/bp_read/Makefile config.status: creating tests/suite/Makefile config.status: creating tests/suite/programs/Makefile config.status: creating utils/Makefile config.status: creating utils/adios_lint/Makefile config.status: creating utils/gpp/Makefile config.status: creating utils/bpdump/Makefile config.status: creating utils/bp2h5/Makefile config.status: creating utils/bp2ncd/Makefile config.status: creating utils/bp2ascii/Makefile config.status: creating utils/bpsplit/Makefile config.status: creating utils/bpls/Makefile config.status: creating utils/bp2bp/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/C/scalars/Makefile config.status: creating examples/C/arrays/Makefile config.status: creating examples/C/attributes/Makefile config.status: creating examples/C/manual/Makefile config.status: creating examples/C/global-array/Makefile config.status: creating examples/C/global-array-time/Makefile config.status: creating examples/C/stat/Makefile config.status: creating examples/C/read_all/Makefile config.status: creating examples/Fortran/Makefile config.status: creating examples/Fortran/scalars/Makefile config.status: creating examples/Fortran/arrays/Makefile config.status: creating examples/Fortran/global-array/Makefile config.status: creating examples/Fortran/global-array-time/Makefile config.status: creating adios_config.flags config.status: creating config.h config.status: executing depfiles commands ********************************* adios configured as follows: ********************************* - General Compile FLAGS - CC = mpicc - CXX = g++ - FC = f95 - CPPFLAGS = - CFLAGS = -g -O2 - CXXFLAGS = -g -O2 - FCFLAGS = -g -O2 - LDLAGS = - LIBS = - MPICC = mpicc - MPICXX = mpic++ - MPIFC = mpif77 - MPILIBS = - No research transport methods - MXML - MXML_CFLAGS = - MXML_CPPFLAGS = - MXML_LDFLAGS = - MXML_LIBS = -lmxml - LUSTRE - LUSTRE_CFLAGS = - LUSTRE_CPPFLAGS = -I/usr/include - LUSTRE_LDFLAGS = -L/usr/lib - LUSTRE_LIBS = -llustreapi - No Portals - INFINIBAND - INFINIBAND_CFLAGS = - INFINIBAND_CPPFLAGS = - INFINIBAND_LDFLAGS = - INFINIBAND_LIBS = -libverbs - No DataTap transport - No DART to build DART transport method - No DIMES to build DIMES transport method - PHDF5 - PHDF5_CFLAGS = - PHDF5_CPPFLAGS = - PHDF5_LDFLAGS = - PHDF5_LIBS = -lhdf5_hl -lhdf5 -lz - HDF5 - HDF5_CFLAGS = - HDF5_CPPFLAGS = - HDF5_LDFLAGS = - HDF5_LIBS = -lhdf5_hl -lhdf5 -lz - NetCDF 4 Parallel - NC4PAR_CFLAGS = - NC4PAR_CPPFLAGS = - NC4PAR_LDFLAGS = - NC4PAR_LIBS = -lnetcdf - NetCDF - NETCDF_CFLAGS = - NETCDF_CPPFLAGS = - NETCDF_LDFLAGS = - NETCDF_LIBS = -lnetcdf - No NSSI - SVN version = unknown - Install path = /build/adios-wLJMxb/adios-1.3/debian/tmp make[1]: Leaving directory `/build/adios-wLJMxb/adios-1.3' dh_auto_build make[1]: Entering directory `/build/adios-wLJMxb/adios-1.3' make all-recursive make[2]: Entering directory `/build/adios-wLJMxb/adios-1.3' Making all in src make[3]: Entering directory `/build/adios-wLJMxb/adios-1.3/src' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios.o `test -f 'adios.c' || echo './'`adios.c adios.c:205:58: warning: conversion specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "cannot allocate %lld bytes to copy " ~~~^ %lu adios.c:221:58: warning: conversion specifies type 'long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "cannot allocate %lld bytes to copy " ~~~^ %lu adios.c:244:9: warning: implicit declaration of function 'adios_copy_var_written' is invalid in C99 [-Wimplicit-function-declaration] adios_copy_var_written (&fd->group->vars_written, v, fd); ^ 3 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-common_adios.o `test -f 'common_adios.c' || echo './'`common_adios.c common_adios.c:192:37: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "needs: %llu available: %llu.\n" ~~~^ %lu common_adios.c:192:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "needs: %llu available: %llu.\n" ~~~^ %lu common_adios.c:239:50: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Cannot allocate %llu bytes for buffered output.\n", ~~~^ %lu 3 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_transport_hooks.o `test -f 'adios_transport_hooks.c' || echo './'`adios_transport_hooks.c mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_mpi.o `test -f 'adios_mpi.c' || echo './'`adios_mpi.c adios_mpi.c:1184:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "a:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1286:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "b:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1343:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "c:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1396:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_mpi.c:1417:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_mpi.c:1640:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1708:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:1770:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:2079:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:2143:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi.c:2206:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu 11 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_mpi_lustre.o `test -f 'adios_mpi_lustre.c' || echo './'`adios_mpi_lustre.c adios_mpi_lustre.c:234:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_lustre.c:245:10: warning: implicit declaration of function 'llapi_lov_get_uuids' is invalid in C99 [-Wimplicit-function-declaration] rc = llapi_lov_get_uuids(fd, uuids, &num_ost); ^ adios_mpi_lustre.c:260:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:260:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_lustre.c:260:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_lustre.c:281:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:281:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_lustre.c:281:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_lustre.c:299:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_offset")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:299:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_offset")) ^ == adios_mpi_lustre.c:299:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_offset")) ^ ( ) adios_mpi_lustre.c:317:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:317:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == adios_mpi_lustre.c:317:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:364:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:364:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == adios_mpi_lustre.c:364:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:1357:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "a:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1358:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1425:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "b:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1426:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1450:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "c:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1451:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1499:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_mpi_lustre.c:1520:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_mpi_lustre.c:1706:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1707:51: warning: conversion specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %d\n" ~^ %lu adios_mpi_lustre.c:1740:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1741:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1768:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1769:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:1971:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:1972:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:2002:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:2003:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_lustre.c:2030:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_lustre.c:2031:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu 27 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_mpi_amr.o `test -f 'adios_mpi_amr.c' || echo './'`adios_mpi_amr.c adios_mpi_amr.c:239:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:239:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_amr.c:239:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_amr.c:257:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:257:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_amr.c:257:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_amr.c:274:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_amr.c:346:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_ost")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:346:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_ost")) ^ == adios_mpi_amr.c:346:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_ost")) ^ ( ) adios_mpi_amr.c:363:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_aggregators")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:363:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_aggregators")) ^ == adios_mpi_amr.c:363:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_aggregators")) ^ ( ) adios_mpi_amr.c:388:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "threading")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:388:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "threading")) ^ == adios_mpi_amr.c:388:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "threading")) ^ ( ) adios_mpi_amr.c:409:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "osts_to_skip")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:409:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "osts_to_skip")) ^ == adios_mpi_amr.c:409:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "osts_to_skip")) ^ ( ) adios_mpi_amr.c:424:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "aggregation_type")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:424:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "aggregation_type")) ^ == adios_mpi_amr.c:424:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "aggregation_type")) ^ ( ) adios_mpi_amr.c:509:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'unsigned long' [-Wformat] "Requested: %llu\n", *buffer_offset + size + 1000); ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu adios_mpi_amr.c:740:5: warning: implicit declaration of function 'mkdir' is invalid in C99 [-Wimplicit-function-declaration] mkdir (dir_name, S_IRWXU | S_IRWXG); ^ adios_mpi_amr.c:1052:22: warning: implicit declaration of function 'llapi_lov_get_uuids' is invalid in C99 [-Wimplicit-function-declaration] rc = llapi_lov_get_uuids(f, uuids, &md->g_num_ost); ^ adios_mpi_amr.c:1078:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (ch = strrchr (fd->name, '/')) ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:1078:20: note: use '==' to turn this assignment into an equality comparison if (ch = strrchr (fd->name, '/')) ^ == adios_mpi_amr.c:1078:20: note: place parentheses around the assignment to silence this warning if (ch = strrchr (fd->name, '/')) ^ ( ) adios_mpi_amr.c:1438:66: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "a:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1439:49: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:1548:66: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "b:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1549:49: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:1613:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_mpi_amr.c:1634:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_mpi_amr.c:1842:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1843:55: warning: conversion specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %d\n" ~^ %lu adios_mpi_amr.c:1913:78: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1914:61: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:1962:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:1963:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:2015:93: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] fprintf (stderr, "Warning: The max allowed aggregation buffer is %llu bytes.\n" ~~~^ %d adios_mpi_amr.c:2016:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] "But this ADIOS method needs extra %llu bytes for aggregation\n" ~~~^ %d adios_mpi_amr.c:2033:84: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] fprintf (stderr, "The max allowed aggregation buffer is %llu.\n" ~~~^ %d adios_mpi_amr.c:2255:17: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&buffer, &buffer_size, &buffer_offset, flag); ^ adios_mpi_amr.c:1792:13: warning: enumeration value 'adios_mode_update' not handled in switch [-Wswitch-enum] switch (fd->mode) ^ adios_mpi_amr.c:2532:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:2533:55: warning: conversion specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %d\n" ~^ %lu adios_mpi_amr.c:2603:78: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:2604:61: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:2652:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:2653:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:2701:84: warning: conversion specifies type 'unsigned long long' but the argument has type 'int' [-Wformat] fprintf (stderr, "The max allowed aggregation buffer is %llu.\n" ~~~^ %d adios_mpi_amr.c:3416:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "d:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:3417:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:3447:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "e:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:3448:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu adios_mpi_amr.c:3475:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "f:MPI method tried to write %llu, " ~~~^ %lu adios_mpi_amr.c:3476:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] "only wrote %llu\n" ~~~^ %lu 42 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_posix.o `test -f 'adios_posix.c' || echo './'`adios_posix.c adios_posix.c:525:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:526:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:583:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:584:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:632:62: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:633:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:674:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_posix.c:695:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_posix.c:934:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:935:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:962:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:963:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:986:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:987:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1092:21: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&global_index_buffer ^ adios_posix.c:1100:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1101:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1148:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1149:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1173:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1174:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1197:70: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1198:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix.c:1278:21: warning: implicit declaration of function 'adios_sort_index_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_sort_index_v1 (&p->old_pg_root ^ adios_posix.c:1313:74: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX method tried to write %llu, " ~~~^ %lu adios_posix.c:1314:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu, Mode: a\n" ~~~^ %ld 26 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_posix1.o `test -f 'adios_posix1.c' || echo './'`adios_posix1.c adios_posix1.c:253:63: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:254:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:311:63: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:312:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:360:63: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:361:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:402:59: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "Out of memory allocating %llu bytes for %s\n" ~~~^ %lu adios_posix1.c:423:76: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "OVERFLOW: Cannot allocate requested buffer of %llu " ~~~^ %lu adios_posix1.c:662:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:663:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:690:75: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:691:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:714:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:715:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:766:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:767:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:791:75: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:792:57: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld adios_posix1.c:815:71: warning: conversion specifies type 'unsigned long long' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] fprintf (stderr, "POSIX1 method tried to write %llu, " ~~~^ %lu adios_posix1.c:816:53: warning: conversion specifies type 'unsigned long long' but the argument has type 'ssize_t' (aka 'long') [-Wformat] "only wrote %llu\n" ~~~^ %ld 20 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -I/usr/include -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -g -O2 -c -o libadios_a-adios_internals.o `test -f 'adios_internals.c' || echo './'`adios_internals.c adios_internals.c:605:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_long', 'adios_real'... [-Wswitch-enum] switch (type) ^ adios_internals.c:697:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_byte', 'adios_short'... [-Wswitch-enum] switch (type) ^ adios_internals.c:1658:45: warning: conversion specifies type 'unsigned long long' but the argument has type 'unsigned long' [-Wformat] "Requested: %llu\n", *buffer_offset + size + 1000); ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %lu adios_internals.c:2448:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (type) ^ adios_internals.c:2595:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (var->type) ^ adios_internals.c:2788:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (v->type) ^ adios_internals.c:3206:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (vars_root->type) ^ adios_internals.c:3904:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch-enum] switch (v->type) ^ adios_internals.c:4046:9: error: non-void function 'adios_generate_var_characteristics_v1' should return a value [-Wreturn-type] return ; ^ 8 warnings and 1 error generated. make[3]: *** [libadios_a-adios_internals.o] Error 1 make[3]: Leaving directory `/build/adios-wLJMxb/adios-1.3/src' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/build/adios-wLJMxb/adios-1.3' make[1]: *** [all] Error 2 make[1]: Leaving directory `/build/adios-wLJMxb/adios-1.3' dh_auto_build: make -j1 returned exit code 2 make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1154 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-d4fb166f-7749-4752-b174-c7405487d7a4/build/adios-wLJMxb Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 8992 Build-Time: 13 Distribution: lsid64c Fail-Stage: build Install-Time: 15 Job: adios_1.3-7 Package: adios Package-Time: 38 Source-Version: 1.3-7 Space: 8992 Status: attempted Version: 1.3-7 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1154 Build needed 00:00:38, 8992k disc space DC-Build-Status: Failed 1399.396768s ### Content of /var/log/daemon.log ### ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 1399.396768 versus expected 32000 (r/m: 21.8669957882881 ; m: 1399.396768) DC-Build-Network: USED. See /tmp/rulesafter.XUzRK4 ! ************************************************************ # Generated by iptables-save v1.4.8 on Sun Sep 11 11:54:06 2011 *filter :INPUT ACCEPT [2217883:7878022361] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [1079446:6582538857] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [401820:37617873] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [2034:199256] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [3:160] -A OUTPUT -j LD [3:160] -A LD -j LOG [3:160] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Sun Sep 11 11:54:06 2011 ************************************************************ --- /tmp/rulesbefore.QAZcFf 2011-09-11 11:30:46.698410159 +0200 +++ /tmp/rulesafter.XUzRK4 2011-09-11 11:54:06.102660440 +0200 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Sun Sep 11 11:30:46 2011 +# Generated by iptables-save v1.4.8 on Sun Sep 11 11:54:06 2011 *filter -:INPUT ACCEPT [1753794:5602958259] +:INPUT ACCEPT [2217883:7878022361] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[927305:4646479983] -A OUTPUT -o lo -j ACCEPT +[1079446:6582538857] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,10 +16,10 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[292969:28889313] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT -[1390:137048] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[401820:37617873] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[2034:199256] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [3:160] -A OUTPUT -j LD [3:160] -A LD -j LOG [3:160] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Sun Sep 11 11:30:46 2011 +# Completed on Sun Sep 11 11:54:06 2011 ************************************************************ [ 11.697617] ACPI: SSDT 00000000bff0134a 0016E (v01 PmRef Cpu6Ist 00003000 INTL 20050228) [ 11.747925] processor LNXCPU:06: registered as cooling_device6 [ 11.783430] ACPI: SSDT 00000000bff014b8 0016E (v01 PmRef Cpu7Ist 00003000 INTL 20050228) [ 11.833731] processor LNXCPU:07: registered as cooling_device7 [ 11.871299] EDAC MC: Ver: 2.1.0 Mar 7 2011 [ 11.873443] shpchp: Standard Hot Plug PCI Controller Driver version: 0.4 [ 11.874646] ioatdma: Intel(R) QuickData Technology Driver 4.00 [ 11.874719] ioatdma 0000:00:0f.0: PCI INT A -> GSI 16 (level, low) -> IRQ 16 [ 12.013982] ioatdma 0000:00:0f.0: setting latency timer to 64 [ 12.014043] alloc irq_desc for 56 on node -1 [ 12.014044] alloc kstat_irqs on node -1 [ 12.014053] ioatdma 0000:00:0f.0: irq 56 for MSI/MSI-X [ 12.014055] alloc irq_desc for 57 on node -1 [ 12.014056] alloc kstat_irqs on node -1 [ 12.014060] ioatdma 0000:00:0f.0: irq 57 for MSI/MSI-X [ 12.014062] alloc irq_desc for 58 on node -1 [ 12.014063] alloc kstat_irqs on node -1 [ 12.014066] ioatdma 0000:00:0f.0: irq 58 for MSI/MSI-X [ 12.014068] alloc irq_desc for 59 on node -1 [ 12.014069] alloc kstat_irqs on node -1 [ 12.014072] ioatdma 0000:00:0f.0: irq 59 for MSI/MSI-X [ 12.014353] i801_smbus 0000:00:1f.3: PCI INT B -> GSI 23 (level, low) -> IRQ 23 [ 12.058211] intel_rng: FWH not detected [ 12.081450] EDAC MC0: Giving out device to 'i5400_edac.c' 'I5400': DEV 0000:00:10.0 [ 12.127527] EDAC PCI0: Giving out device to module 'i5400_edac' controller 'EDAC PCI controller': DEV '0000:00:10.0' (POLLED) [ 12.196632] Error: Driver 'pcspkr' is already registered, aborting... [ 12.578701] Adding 3911788k swap on /dev/sda1. Priority:-1 extents:1 across:3911788k [ 12.628413] EXT3 FS on sda3, internal journal [ 12.873185] kjournald starting. Commit interval 5 seconds [ 12.873325] EXT3 FS on sda5, internal journal [ 12.873330] EXT3-fs: mounted filesystem with ordered data mode. [ 13.288257] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.344048] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.346339] ADDRCONF(NETDEV_UP): eth0: link is not ready [ 15.979937] e1000e: eth0 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX/TX [ 16.029654] ADDRCONF(NETDEV_CHANGE): eth0: link becomes ready [ 26.780003] eth0: no IPv6 routers present [ 415.040783] RPC: Registered udp transport module. [ 415.069069] RPC: Registered tcp transport module. [ 415.097330] RPC: Registered tcp NFSv4.1 backchannel transport module. [ 415.168909] Slow work thread pool: Starting up [ 415.195648] Slow work thread pool: Ready [ 415.219258] FS-Cache: Loaded [ 415.259534] FS-Cache: Netfs 'nfs' registered for caching [ 415.298651] svc: failed to register lockdv1 RPC service (errno 97). [ 441.412402] Adding 296929352k swap on /dev/sda5. Priority:-2 extents:1 across:296929352k [ 456.622709] ip_tables: (C) 2000-2006 Netfilter Core Team [ 459.116012] IN= OUT=eth0 SRC=172.16.66.130 DST=224.0.0.22 LEN=40 TOS=0x00 PREC=0xC0 TTL=1 ID=0 DF PROTO=2 [ 1125.030995] IN= OUT=eth0 SRC=172.16.66.130 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=59344 DF PROTO=TCP SPT=54724 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 1128.120520] IN= OUT=eth0 SRC=172.16.66.130 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=59345 DF PROTO=TCP SPT=54724 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************