DC-Build-Header: bwa 0.5.9-2 / Sun Sep 11 15:57:52 +0200 2011 Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-111.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ bwa 0.5.9-2 (amd64) 11 Sep 2011 16:07 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: bwa Version: 0.5.9-2 Source Version: 0.5.9-2 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (50.1 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at: git://git.debian.org/git/debian-med/bwa.git Need to get 119 kB of source archives. Get:1 http://localhost/debian/ sid/main bwa 0.5.9-2 (dsc) [1245 B] Get:2 http://localhost/debian/ sid/main bwa 0.5.9-2 (tar) [114 kB] Get:3 http://localhost/debian/ sid/main bwa 0.5.9-2 (diff) [3828 B] Fetched 119 kB in 0s (823 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/bwa-qTQy1S/resolver-dew0Ub/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-8e122ced-5e4d-40d1-be7b-67190d8ed037/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev dpkg-deb: building package `sbuild-build-depends-bwa-dummy' in `/build/bwa-qTQy1S/resolver-f9ZXLS/apt_archive/sbuild-build-depends-bwa-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install bwa build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bwa-dummy zlib1g-dev 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 9388 kB/9389 kB of archives. After this operation, 27.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 bsdmainutils groff-base man-db libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper zlib1g-dev sbuild-build-depends-bwa-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:4 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:5 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:6 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:7 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:8 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:9 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:10 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:11 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:12 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:13 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:18 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Preconfiguring packages ... Fetched 9388 kB in 0s (42.7 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously deselected package sbuild-build-depends-bwa-dummy. Unpacking sbuild-build-depends-bwa-dummy (from .../sbuild-build-depends-bwa-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libpcre3 (8.12-4) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up sbuild-build-depends-bwa-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 readline-common_6.2-4 sbuild-build-depends-bwa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Mar 11 22:59:41 2011 CET using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc dpkg-source: info: extracting bwa in bwa-0.5.9 dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2 dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package bwa dpkg-buildpackage: source version 0.5.9-2 dpkg-source --before-build bwa-0.5.9 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/bwa-qTQy1S/bwa-0.5.9' make[2]: Entering directory `/build/bwa-qTQy1S/bwa-0.5.9' rm -f gmon.out *.o a.out bwa *~ *.a make[2]: Leaving directory `/build/bwa-qTQy1S/bwa-0.5.9' make[2]: Entering directory `/build/bwa-qTQy1S/bwa-0.5.9/bwt_gen' rm -f gmon.out *.o a.out *~ *.a make[2]: Leaving directory `/build/bwa-qTQy1S/bwa-0.5.9/bwt_gen' make[1]: Leaving directory `/build/bwa-qTQy1S/bwa-0.5.9' dh_clean dpkg-source -b bwa-0.5.9 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building bwa using existing ./bwa_0.5.9.orig.tar.bz2 dpkg-source: info: building bwa in bwa_0.5.9-2.debian.tar.gz dpkg-source: info: building bwa in bwa_0.5.9-2.dsc debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/bwa-qTQy1S/bwa-0.5.9' make[2]: Entering directory `/build/bwa-qTQy1S/bwa-0.5.9' make[2]: Nothing to be done for `lib'. make[2]: Leaving directory `/build/bwa-qTQy1S/bwa-0.5.9' make[2]: Entering directory `/build/bwa-qTQy1S/bwa-0.5.9/bwt_gen' gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o ar -cru libbwtgen.a bwt_gen.o QSufSort.o make[2]: Leaving directory `/build/bwa-qTQy1S/bwa-0.5.9/bwt_gen' gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen bwt.o: In function `bwt_cal_sa': /build/bwa-qTQy1S/bwa-0.5.9/bwt.c:63: undefined reference to `bwt_occ' bwt.o: In function `bwt_sa': /build/bwa-qTQy1S/bwa-0.5.9/bwt.c:74: undefined reference to `bwt_occ' bwt.o: In function `bwt_match_exact': /build/bwa-qTQy1S/bwa-0.5.9/bwt.c:224: undefined reference to `bwt_2occ' bwt.o: In function `bwt_match_exact_alt': /build/bwa-qTQy1S/bwa-0.5.9/bwt.c:243: undefined reference to `bwt_2occ' bwtaln.o: In function `bwt_cal_width': /build/bwa-qTQy1S/bwa-0.5.9/bwtaln.c:140: undefined reference to `bwt_2occ' bwtgap.o: In function `bwt_match_gap': /build/bwa-qTQy1S/bwa-0.5.9/bwtgap.c:201: undefined reference to `bwt_2occ4' bwtsw2_core.o: In function `bsw2_connectivity': /build/bwa-qTQy1S/bwa-0.5.9/bwtsw2_core.c:104: undefined reference to `bwtl_2occ4' bwtsw2_core.o: In function `bsw2_core': /build/bwa-qTQy1S/bwa-0.5.9/bwtsw2_core.c:476: undefined reference to `bwtl_2occ4' /build/bwa-qTQy1S/bwa-0.5.9/bwtsw2_core.c:529: undefined reference to `bwt_2occ4' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: *** [bwa] Error 1 make[1]: Leaving directory `/build/bwa-qTQy1S/bwa-0.5.9' dh_auto_build: make -j1 returned exit code 2 make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1607 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-8e122ced-5e4d-40d1-be7b-67190d8ed037/build/bwa-qTQy1S Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 1512 Build-Time: 9 Distribution: lsid64c Fail-Stage: build Install-Time: 9 Job: bwa_0.5.9-2 Package: bwa Package-Time: 30 Source-Version: 0.5.9-2 Space: 1512 Status: attempted Version: 0.5.9-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1607 Build needed 00:00:30, 1512k disc space DC-Message: Failed, but took only 602.528513. Retrying, you never know. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-111.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ bwa 0.5.9-2 (amd64) 11 Sep 2011 16:17 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: bwa Version: 0.5.9-2 Source Version: 0.5.9-2 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (64.0 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at: git://git.debian.org/git/debian-med/bwa.git Need to get 119 kB of source archives. Get:1 http://localhost/debian/ sid/main bwa 0.5.9-2 (dsc) [1245 B] Get:2 http://localhost/debian/ sid/main bwa 0.5.9-2 (tar) [114 kB] Get:3 http://localhost/debian/ sid/main bwa 0.5.9-2 (diff) [3828 B] Fetched 119 kB in 0s (0 B/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/bwa-8xuEKH/resolver-7oYy8h/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/700 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-92c77744-43f9-4925-b6f1-7a467c46cf73/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev dpkg-deb: building package `sbuild-build-depends-bwa-dummy' in `/build/bwa-8xuEKH/resolver-Lra9f9/apt_archive/sbuild-build-depends-bwa-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install bwa build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bwa-dummy zlib1g-dev 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 9388 kB/9389 kB of archives. After this operation, 27.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 bsdmainutils groff-base man-db libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper zlib1g-dev sbuild-build-depends-bwa-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:4 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:5 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:6 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:7 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:8 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:9 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:10 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:11 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:12 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:13 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:18 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Preconfiguring packages ... Fetched 9388 kB in 0s (61.4 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously deselected package sbuild-build-depends-bwa-dummy. Unpacking sbuild-build-depends-bwa-dummy (from .../sbuild-build-depends-bwa-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libpcre3 (8.12-4) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up sbuild-build-depends-bwa-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 readline-common_6.2-4 sbuild-build-depends-bwa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri Mar 11 22:59:41 2011 CET using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc dpkg-source: info: extracting bwa in bwa-0.5.9 dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2 dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package bwa dpkg-buildpackage: source version 0.5.9-2 dpkg-source --before-build bwa-0.5.9 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/bwa-8xuEKH/bwa-0.5.9' make[2]: Entering directory `/build/bwa-8xuEKH/bwa-0.5.9' rm -f gmon.out *.o a.out bwa *~ *.a make[2]: Leaving directory `/build/bwa-8xuEKH/bwa-0.5.9' make[2]: Entering directory `/build/bwa-8xuEKH/bwa-0.5.9/bwt_gen' rm -f gmon.out *.o a.out *~ *.a make[2]: Leaving directory `/build/bwa-8xuEKH/bwa-0.5.9/bwt_gen' make[1]: Leaving directory `/build/bwa-8xuEKH/bwa-0.5.9' dh_clean dpkg-source -b bwa-0.5.9 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building bwa using existing ./bwa_0.5.9.orig.tar.bz2 dpkg-source: info: building bwa in bwa_0.5.9-2.debian.tar.gz dpkg-source: info: building bwa in bwa_0.5.9-2.dsc debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/bwa-8xuEKH/bwa-0.5.9' make[2]: Entering directory `/build/bwa-8xuEKH/bwa-0.5.9' make[2]: Nothing to be done for `lib'. make[2]: Leaving directory `/build/bwa-8xuEKH/bwa-0.5.9' make[2]: Entering directory `/build/bwa-8xuEKH/bwa-0.5.9/bwt_gen' gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o ar -cru libbwtgen.a bwt_gen.o QSufSort.o make[2]: Leaving directory `/build/bwa-8xuEKH/bwa-0.5.9/bwt_gen' gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen bwt.o: In function `bwt_cal_sa': /build/bwa-8xuEKH/bwa-0.5.9/bwt.c:63: undefined reference to `bwt_occ' bwt.o: In function `bwt_sa': /build/bwa-8xuEKH/bwa-0.5.9/bwt.c:74: undefined reference to `bwt_occ' bwt.o: In function `bwt_match_exact': /build/bwa-8xuEKH/bwa-0.5.9/bwt.c:224: undefined reference to `bwt_2occ' bwt.o: In function `bwt_match_exact_alt': /build/bwa-8xuEKH/bwa-0.5.9/bwt.c:243: undefined reference to `bwt_2occ' bwtaln.o: In function `bwt_cal_width': /build/bwa-8xuEKH/bwa-0.5.9/bwtaln.c:140: undefined reference to `bwt_2occ' bwtgap.o: In function `bwt_match_gap': /build/bwa-8xuEKH/bwa-0.5.9/bwtgap.c:201: undefined reference to `bwt_2occ4' bwtsw2_core.o: In function `bsw2_connectivity': /build/bwa-8xuEKH/bwa-0.5.9/bwtsw2_core.c:104: undefined reference to `bwtl_2occ4' bwtsw2_core.o: In function `bsw2_core': /build/bwa-8xuEKH/bwa-0.5.9/bwtsw2_core.c:476: undefined reference to `bwtl_2occ4' /build/bwa-8xuEKH/bwa-0.5.9/bwtsw2_core.c:529: undefined reference to `bwt_2occ4' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: *** [bwa] Error 1 make[1]: Leaving directory `/build/bwa-8xuEKH/bwa-0.5.9' dh_auto_build: make -j1 returned exit code 2 make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1618 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-92c77744-43f9-4925-b6f1-7a467c46cf73/build/bwa-8xuEKH Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 1512 Build-Time: 6 Distribution: lsid64c Fail-Stage: build Install-Time: 4 Job: bwa_0.5.9-2 Package: bwa Package-Time: 19 Source-Version: 0.5.9-2 Space: 1512 Status: attempted Version: 0.5.9-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1618 Build needed 00:00:19, 1512k disc space DC-Build-Status: Failed 1222.871478s ### Content of /var/log/daemon.log ### Sep 11 10:47:35 talc-111 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:47:46 talc-111 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:47:57 talc-111 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:08 talc-111 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:24 talc-111 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:48:52 talc-111 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:48:55 talc-111 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:06 talc-111 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:18 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:29 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:40 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:51 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:01 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:17 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:46 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en is taking too long Sep 11 10:50:51 talc-111 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.xz is taking too long Sep 11 15:46:16 talc-111 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 15:46:55 talc-111 approx: Concurrent download of debian/dists/sid/Release is taking too long ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 1222.871478 versus expected 22 (r/m: 54.5850671818182 ; m: 22.0) DC-Build-Network: USED. See /tmp/rulesafter.s1NJR9 ! ************************************************************ # Generated by iptables-save v1.4.8 on Sun Sep 11 16:18:15 2011 *filter :INPUT ACCEPT [4917251:25189148604] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [1965428:22593696421] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [804818:98633165] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [10545:1005620] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [3:180] -A OUTPUT -j LD [3:180] -A LD -j LOG [3:180] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Sun Sep 11 16:18:15 2011 ************************************************************ --- /tmp/rulesbefore.3raDgk 2011-09-11 15:57:52.898771879 +0200 +++ /tmp/rulesafter.s1NJR9 2011-09-11 16:18:15.775021269 +0200 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Sun Sep 11 15:57:52 2011 +# Generated by iptables-save v1.4.8 on Sun Sep 11 16:18:15 2011 *filter -:INPUT ACCEPT [4617254:22881695828] +:INPUT ACCEPT [4917251:25189148604] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[1790751:20359396864] -A OUTPUT -o lo -j ACCEPT +[1965428:22593696421] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,10 +16,10 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[772688:93483102] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT -[10050:958828] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[804818:98633165] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[10545:1005620] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [3:180] -A OUTPUT -j LD [3:180] -A LD -j LOG [3:180] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Sun Sep 11 15:57:52 2011 +# Completed on Sun Sep 11 16:18:15 2011 ************************************************************ [ 9732.597194] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. [ 9732.644120] gcc D ffff880325a79bf8 0 32475 32474 0x00000000 [ 9732.685421] ffff88043e5db170 0000000000000082 ffff88043a4a0000 ffff880114173888 [ 9732.730124] ffff88043b2c1000 ffffffff8118bc16 000000000000f9e0 ffff880325a79fd8 [ 9732.774736] 0000000000015780 0000000000015780 ffff88043c03cdb0 ffff88043c03d0a8 [ 9732.819348] Call Trace: [ 9732.834022] [] ? cfq_dispatch_requests+0x106/0x420 [ 9732.872610] [] ? cfq_may_queue+0x59/0xd7 [ 9732.905987] [] ? read_tsc+0xa/0x20 [ 9732.936255] [] ? get_request+0x7e/0x2ba [ 9732.969111] [] ? io_schedule+0x73/0xb7 [ 9733.001449] [] ? get_request_wait+0xf0/0x188 [ 9733.036918] [] ? autoremove_wake_function+0x0/0x2e [ 9733.075490] [] ? __make_request+0x2f7/0x428 [ 9733.110437] [] ? generic_make_request+0x299/0x2f9 [ 9733.148491] [] ? submit_bio+0xd6/0xf2 [ 9733.180308] [] ? end_swap_bio_read+0x0/0x60 [ 9733.215248] [] ? bio_alloc+0x10/0x1f [ 9733.246557] [] ? get_swap_bio+0x4a/0x9a [ 9733.279412] [] ? swap_readpage+0x4f/0x53 [ 9733.312790] [] ? read_swap_cache_async+0xb3/0xf3 [ 9733.350344] [] ? swapin_readahead+0x57/0x98 [ 9733.385279] [] ? handle_mm_fault+0x47f/0x80f [ 9733.420732] [] ? do_page_fault+0x2e0/0x2fc [ 9733.455159] [] ? page_fault+0x25/0x30 [ 9733.486970] INFO: task gcc:32477 blocked for more than 120 seconds. [ 9733.524511] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. [ 9733.571430] gcc D 0000000000000000 0 32477 32475 0x00000000 [ 9733.612738] ffffffff814611f0 0000000000000082 0000000000000000 ffff88000fa15780 [ 9733.657394] ffff88043e5da350 ffffffff812fae40 000000000000f9e0 ffff8803631f7fd8 [ 9733.702002] 0000000000015780 0000000000015780 ffff88043c03f810 ffff88043c03fb08 [ 9733.746612] Call Trace: [ 9733.761290] [] ? thread_return+0x79/0xe0 [ 9733.794673] [] ? get_request+0x7e/0x2ba [ 9733.827543] [] ? io_schedule+0x73/0xb7 [ 9733.859875] [] ? get_request_wait+0xf0/0x188 [ 9733.895334] [] ? autoremove_wake_function+0x0/0x2e [ 9733.933916] [] ? __make_request+0x2f7/0x428 [ 9733.968854] [] ? generic_make_request+0x299/0x2f9 [ 9734.006915] [] ? submit_bio+0xd6/0xf2 [ 9734.038748] [] ? end_swap_bio_read+0x0/0x60 [ 9734.073675] [] ? bio_alloc+0x10/0x1f [ 9734.104975] [] ? get_swap_bio+0x4a/0x9a [ 9734.137844] [] ? swap_readpage+0x4f/0x53 [ 9734.171217] [] ? read_swap_cache_async+0xb3/0xf3 [ 9734.208756] [] ? swapin_readahead+0x57/0x98 [ 9734.243697] [] ? handle_mm_fault+0x47f/0x80f [ 9734.279165] [] ? do_page_fault+0x2e0/0x2fc [ 9734.313576] [] ? page_fault+0x25/0x30 [20026.865100] cpp[12122]: segfault at 0 ip 000000000057b5ef sp 00007fff0324ba40 error 4 in clang[400000+8e1000] ************************************************************