DC-Build-Header: last-align 178-1 / Sun Sep 11 11:30:07 +0200 2011 Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-112.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ last-align 178-1 (amd64) 11 Sep 2011 11:32 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: last-align Version: 178-1 Source Version: 178-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (62.2 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'last-align' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/last-align/trunk/ Need to get 308 kB of source archives. Get:1 http://localhost/debian/ sid/main last-align 178-1 (dsc) [2013 B] Get:2 http://localhost/debian/ sid/main last-align 178-1 (tar) [299 kB] Get:3 http://localhost/debian/ sid/main last-align 178-1 (diff) [7552 B] Fetched 308 kB in 1s (305 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/last-align-sCRIyb/resolver-agfUfo/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/700 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-3a5cd5d0-f547-4ca2-9e54-cc3281ffc1f6/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, help2man (>= 1.36.4+nmu1), python-imaging Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, help2man (>= 1.36.4+nmu1), python-imaging dpkg-deb: building package `sbuild-build-depends-last-align-dummy' in `/build/last-align-sCRIyb/resolver-eicYAA/apt_archive/sbuild-build-depends-last-align-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install last-align build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libdb4.8 libexpat1 libfreetype6 libglib2.0-0 libjpeg8 liblcms1 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-imaging python-minimal python2.6 python2.6-minimal Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff liblcms-utils www-browser libmail-box-perl python-doc python-tk python-imaging-doc python-imaging-dbg python2.6-doc binfmt-support Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libdb4.8 libexpat1 libfreetype6 libglib2.0-0 libjpeg8 liblcms1 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-imaging python-minimal python2.6 python2.6-minimal sbuild-build-depends-last-align-dummy 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 17.2 MB/17.2 MB of archives. After this operation, 53.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libssl1.0.0 liblocale-gettext-perl libpcre3 libfreetype6 libdb4.8 bsdmainutils groff-base man-db libmagic1 file gettext-base libsqlite3-0 libxml2 mime-support python2.6-minimal libexpat1 python2.6 python-minimal python html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper cdbs help2man libjpeg8 liblcms1 python-imaging sbuild-build-depends-last-align-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libssl1.0.0 amd64 1.0.0e-2 [1143 kB] Get:3 http://localhost/debian/ sid/main liblocale-gettext-perl amd64 1.05-7 [22.7 kB] Get:4 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:5 http://localhost/debian/ sid/main libfreetype6 amd64 2.4.6-2 [435 kB] Get:6 http://localhost/debian/ sid/main libdb4.8 amd64 4.8.30-9 [694 kB] Get:7 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:8 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:9 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:10 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:11 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:12 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:13 http://localhost/debian/ sid/main libsqlite3-0 amd64 3.7.7-2 [420 kB] Get:14 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:15 http://localhost/debian/ sid/main mime-support all 3.51-1 [35.0 kB] Get:16 http://localhost/debian/ sid/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:17 http://localhost/debian/ sid/main libexpat1 amd64 2.0.1-7 [137 kB] Get:18 http://localhost/debian/ sid/main python2.6 amd64 2.6.7-4 [2483 kB] Get:19 http://localhost/debian/ sid/main python-minimal all 2.6.7-3 [39.2 kB] Get:20 http://localhost/debian/ sid/main python all 2.6.7-3 [177 kB] Get:21 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:22 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:23 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:24 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:25 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:26 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:27 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:28 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:29 http://localhost/debian/ sid/main cdbs all 0.4.96 [75.8 kB] Get:30 http://localhost/debian/ sid/main help2man amd64 1.40.4 [89.5 kB] Get:31 http://localhost/debian/ sid/main libjpeg8 amd64 8c-2 [132 kB] Get:32 http://localhost/debian/ sid/main liblcms1 amd64 1.19.dfsg-1 [111 kB] Get:33 http://localhost/debian/ sid/main python-imaging amd64 1.1.7-4 [457 kB] Extracting templates from packages: 88% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 17.2 MB in 0s (52.4 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libssl1.0.0. Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0e-2_amd64.deb) ... Selecting previously deselected package liblocale-gettext-perl. Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.6-2_amd64.deb) ... Selecting previously deselected package libdb4.8. Unpacking libdb4.8 (from .../libdb4.8_4.8.30-9_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.7-2_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1_all.deb) ... Selecting previously deselected package python2.6-minimal. Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.7-4_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.7-4_amd64.deb) ... Selecting previously deselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.6.7-3_all.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.7-3_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ... Selecting previously deselected package help2man. Unpacking help2man (from .../help2man_1.40.4_amd64.deb) ... Selecting previously deselected package libjpeg8. Unpacking libjpeg8 (from .../libjpeg8_8c-2_amd64.deb) ... Selecting previously deselected package liblcms1. Unpacking liblcms1 (from .../liblcms1_1.19.dfsg-1_amd64.deb) ... Selecting previously deselected package python-imaging. Unpacking python-imaging (from .../python-imaging_1.1.7-4_amd64.deb) ... Selecting previously deselected package sbuild-build-depends-last-align-dummy. Unpacking sbuild-build-depends-last-align-dummy (from .../sbuild-build-depends-last-align-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libssl1.0.0 (1.0.0e-2) ... Setting up liblocale-gettext-perl (1.05-7) ... Setting up libpcre3 (8.12-4) ... Setting up libfreetype6 (2.4.6-2) ... Setting up libdb4.8 (4.8.30-9) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libsqlite3-0 (3.7.7-2) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up mime-support (3.51-1) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up libexpat1 (2.0.1-7) ... Setting up python2.6 (2.6.7-4) ... Setting up python-minimal (2.6.7-3) ... Setting up python (2.6.7-3) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up cdbs (0.4.96) ... Setting up help2man (1.40.4) ... Setting up libjpeg8 (8c-2) ... Setting up liblcms1 (1.19.dfsg-1) ... Setting up python-imaging (1.1.7-4) ... Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.96 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 help2man_1.40.4 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libffi5_3.0.10~rc10-3 libfreetype6_2.4.6-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libjpeg8_8c-2 liblcms1_1.19.dfsg-1 libllvm2.9_2.9+dfsg-3 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsqlite3-0_3.7.7-2 libss2_1.42~WIP-2011-07-02-1 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mime-support_3.51-1 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 python_2.6.7-3 python-imaging_1.1.7-4 python-minimal_2.6.7-3 python2.6_2.6.7-4 python2.6-minimal_2.6.7-4 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Jun 30 07:01:39 2011 CEST using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./last-align_178-1.dsc dpkg-source: info: extracting last-align in last-align-178 dpkg-source: info: unpacking last-align_178.orig.tar.gz dpkg-source: info: unpacking last-align_178-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package last-align dpkg-buildpackage: source version 178-1 dpkg-source --before-build last-align-178 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean make[1]: *** No rule to make target `clean'. make[1]: Entering directory `/build/last-align-sCRIyb/last-align-178' make[1]: Leaving directory `/build/last-align-sCRIyb/last-align-178' make: [makefile-clean] Error 2 (ignored) dh_clean rm -f src/lastdb src/lastal src/lastex src/*.o dpkg-source -b last-align-178 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building last-align using existing ./last-align_178.orig.tar.gz dpkg-source: info: building last-align in last-align_178-1.debian.tar.gz dpkg-source: info: building last-align in last-align_178-1.dsc debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" --directory src make[1]: Entering directory `/build/last-align-sCRIyb/last-align-178/src' g++ -Wall -W -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -g -O2 -g -O2 -Wall -o lastdb Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc SubsetSuffixArray.cc LastdbArguments.cc io.cc fileMap.cc SubsetSuffixArraySort.cc MultiSequenceQual.cc lastdb.cc MultiSequenceQual.cc:191:48: warning: array subscript is of type 'char' [-Wchar-subscripts] unsigned delimiterColumn = lettersToNumbers[' ']; ^~~~ 1 warning generated. gcc -g -O2 -g -O2 -Wall -c CA_code/lambda_calculator.c In file included from CA_code/lambda_calculator.c:12: CA_code/nrutil.c:207:37: warning: incompatible pointer types passing 'int **' to parameter of type 'double **' for(i=n1h;i>=n1l;i--) free_dmatrix(m[i],n2l,n2h,n3l,n3h); ^~~~ 1 warning generated. g++ -Wall -W -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -g -O2 -g -O2 -Wall -o lastal Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc SubsetSuffixArray.cc LastalArguments.cc io.cc fileMap.cc ScoreMatrix.cc DiagonalTable.cc SegmentPair.cc Alignment.cc XdropAligner.cc SegmentPairPot.cc AlignmentPot.cc GeneralizedAffineGapCosts.cc Centroid.cc LambdaCalculator.cc TwoQualityScoreMatrix.cc OneQualityScoreMatrix.cc QualityPssmMaker.cc GeneticCode.cc Xdrop3FrameAligner.cc gaplessXdrop.cc gaplessPssmXdrop.cc gaplessTwoQualityXdrop.cc AlignmentWrite.cc MultiSequenceQual.cc XdropAlignerPssm.cc lastal.cc lambda_calculator.o ScoreMatrix.cc:115:19: warning: array subscript is of type 'char' [-Wchar-subscripts] uchar z = encode[' ']; ^~~~ 1 warning generated. In file included from Alignment.cc:3: In file included from ./Alignment.hh:8: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from Alignment.cc:3: In file included from ./Alignment.hh:7: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ In file included from Alignment.cc:4: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from Alignment.cc:3: ./Alignment.hh:15:7: note: previous use is here class GeneralizedAffineGapCosts; ^ 2 warnings generated. In file included from XdropAligner.cc:4: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from XdropAligner.cc:3: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from XdropAligner.cc:5: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from XdropAligner.cc:3: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from AlignmentPot.cc:3: In file included from ./AlignmentPot.hh:8: In file included from ./Alignment.hh:8: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from AlignmentPot.cc:3: In file included from ./AlignmentPot.hh:8: In file included from ./Alignment.hh:7: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 1 warning generated. In file included from Centroid.cc:3: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from Centroid.cc:3: In file included from ./Centroid.hh:5: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from Centroid.cc:3: In file included from ./Centroid.hh:7: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from Centroid.cc:3: In file included from ./Centroid.hh:5: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from GeneticCode.cc:4: ./Alphabet.hh:19:1: warning: struct 'Alphabet' was previously declared as a class [-Wmismatched-tags] struct Alphabet{ ^~~~~~ class In file included from GeneticCode.cc:3: ./GeneticCode.hh:13:7: note: previous use is here class Alphabet; ^ 1 warning generated. In file included from Xdrop3FrameAligner.cc:5: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from Xdrop3FrameAligner.cc:3: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from Xdrop3FrameAligner.cc:6: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from Xdrop3FrameAligner.cc:3: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from AlignmentWrite.cc:3: In file included from ./Alignment.hh:8: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from AlignmentWrite.cc:3: In file included from ./Alignment.hh:7: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ In file included from AlignmentWrite.cc:6: ./Alphabet.hh:19:1: warning: struct 'Alphabet' was previously declared as a class [-Wmismatched-tags] struct Alphabet{ ^~~~~~ class In file included from AlignmentWrite.cc:4: ./GeneticCode.hh:13:7: note: previous use is here class Alphabet; ^ 2 warnings generated. MultiSequenceQual.cc:191:48: warning: array subscript is of type 'char' [-Wchar-subscripts] unsigned delimiterColumn = lettersToNumbers[' ']; ^~~~ 1 warning generated. In file included from XdropAlignerPssm.cc:4: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from XdropAlignerPssm.cc:3: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from XdropAlignerPssm.cc:5: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from XdropAlignerPssm.cc:3: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from lastal.cc:13: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from lastal.cc:13: In file included from ./Centroid.hh:5: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from lastal.cc:13: In file included from ./Centroid.hh:7: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from lastal.cc:13: In file included from ./Centroid.hh:5: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ In file included from lastal.cc:15: In file included from ./AlignmentPot.hh:8: ./Alignment.hh:15:1: warning: class 'GeneralizedAffineGapCosts' was previously declared as a struct [-Wmismatched-tags] class GeneralizedAffineGapCosts; ^~~~~ struct In file included from lastal.cc:13: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:8: note: previous use is here struct GeneralizedAffineGapCosts{ ^ In file included from lastal.cc:20: ./Alphabet.hh:19:1: warning: struct 'Alphabet' was previously declared as a class [-Wmismatched-tags] struct Alphabet{ ^~~~~~ class In file included from lastal.cc:15: In file included from ./AlignmentPot.hh:8: ./Alignment.hh:17:7: note: previous use is here class Alphabet; ^ 4 warnings generated. g++ -Igumbel_params -g -O2 -g -O2 -Wall -o lastex Alphabet.cc LastexArguments.cc io.cc ScoreMatrix.cc lastex.cc gumbel_params/*.cpp ScoreMatrix.cc:115:19: warning: array subscript is of type 'char' [-Wchar-subscripts] uchar z = encode[' ']; ^~~~ 1 warning generated. In file included from lastex.cc:7: In file included from ./gumbel_params/mcf_local_alignment_evaluer.hpp:10: In file included from gumbel_params/sls_pvalues.hpp:52: gumbel_params/sls_normal_distr_array.hpp:47:15: warning: unused variable 'normal_distr_array_for_P_values_calculation' [-Wunused-variable] static double normal_distr_array_for_P_values_calculation[NORMAL_DISTR_ARRAY_DIM+1]={ ^ 1 warning generated. In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:3: In file included from gumbel_params/mcf_local_alignment_evaluer.hpp:10: In file included from gumbel_params/sls_pvalues.hpp:45: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:6: In file included from gumbel_params/sls_alp_sim.hpp:51: gumbel_params/sls_alp_data.hpp:515:35: warning: explicitly assigning a variable of type 'Int4' (aka 'int') to itself [-Wself-assign] v2=v2; ~~^~~ In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:3: In file included from gumbel_params/mcf_local_alignment_evaluer.hpp:10: In file included from gumbel_params/sls_pvalues.hpp:52: gumbel_params/sls_normal_distr_array.hpp:47:15: warning: unused variable 'normal_distr_array_for_P_values_calculation' [-Wunused-variable] static double normal_distr_array_for_P_values_calculation[NORMAL_DISTR_ARRAY_DIM+1]={ ^ In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:6: In file included from gumbel_params/sls_alp_sim.hpp:51: gumbel_params/sls_alp_data.hpp:74:21: warning: unused variable 'small_long' [-Wunused-variable] static Int4 small_long=(Int4)((double)kMin_I4/2.0); ^ 4 warnings generated. In file included from gumbel_params/njn_dynprogprob.cpp:43: In file included from gumbel_params/njn_dynprogprob.hpp:43: In file included from gumbel_params/njn_dynprogprobproto.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ gumbel_params/njn_dynprogprob.cpp:214:12: warning: unused variable 'arrayPos' [-Wunused-variable] size_t arrayPos = 0; ^ 2 warnings generated. In file included from gumbel_params/njn_dynprogproblim.cpp:39: In file included from gumbel_params/njn_dynprogproblim.hpp:42: In file included from gumbel_params/njn_dynprogprob.hpp:43: In file included from gumbel_params/njn_dynprogprobproto.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: gumbel_params/njn_dynprogproblim.hpp:101:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy (const DynProgProbLim &dynProgProbLim_) ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: gumbel_params/njn_dynprogproblim.hpp:106:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy ( ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ gumbel_params/njn_dynprogproblim.cpp:157:12: warning: unused variable 'arrayPos' [-Wunused-variable] size_t arrayPos = 0; ^ 4 warnings generated. In file included from gumbel_params/njn_dynprogprobproto.cpp:38: In file included from gumbel_params/njn_dynprogprobproto.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ 1 warning generated. In file included from gumbel_params/njn_localmaxstat.cpp:38: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_localmaxstat.cpp:40: gumbel_params/sls_alp_data.hpp:515:35: warning: explicitly assigning a variable of type 'Int4' (aka 'int') to itself [-Wself-assign] v2=v2; ~~^~~ In file included from gumbel_params/njn_localmaxstat.cpp:43: gumbel_params/njn_dynprogproblim.hpp:101:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy (const DynProgProbLim &dynProgProbLim_) ^ In file included from gumbel_params/njn_localmaxstat.cpp:43: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstat.cpp:43: gumbel_params/njn_dynprogproblim.hpp:106:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy ( ^ In file included from gumbel_params/njn_localmaxstat.cpp:43: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstat.cpp:46: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:46: gumbel_params/njn_vector.hpp:240:14: warning: unused variable 'i' [-Wunused-variable] size_t i = 0; ^ gumbel_params/njn_localmaxstat.cpp:155:10: warning: unused variable 'iter' [-Wunused-variable] Int4 iter = 0; ^ gumbel_params/njn_localmaxstat.cpp:156:10: warning: unused variable 'value' [-Wunused-variable] Int4 value = 0; ^ gumbel_params/njn_localmaxstat.cpp:154:12: warning: unused variable 'j' [-Wunused-variable] size_t j = 0; ^ In file included from gumbel_params/njn_localmaxstat.cpp:40: gumbel_params/sls_alp_data.hpp:74:21: warning: unused variable 'small_long' [-Wunused-variable] static Int4 small_long=(Int4)((double)kMin_I4/2.0); ^ 9 warnings generated. In file included from gumbel_params/njn_localmaxstatmatrix.cpp:38: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_localmaxstatmatrix.cpp:41: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:46: gumbel_params/njn_vector.hpp:240:14: warning: unused variable 'i' [-Wunused-variable] size_t i = 0; ^ gumbel_params/njn_localmaxstatmatrix.cpp:147:12: warning: unused variable 'j' [-Wunused-variable] size_t j = 0; ^ 3 warnings generated. In file included from gumbel_params/njn_localmaxstatutil.cpp:38: In file included from gumbel_params/njn_localmaxstatutil.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:38: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:46: gumbel_params/njn_vector.hpp:240:14: warning: unused variable 'i' [-Wunused-variable] size_t i = 0; ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: gumbel_params/njn_dynprogproblim.hpp:101:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy (const DynProgProbLim &dynProgProbLim_) ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: gumbel_params/njn_dynprogproblim.hpp:106:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy ( ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:45: gumbel_params/sls_alp_data.hpp:515:35: warning: explicitly assigning a variable of type 'Int4' (aka 'int') to itself [-Wself-assign] v2=v2; ~~^~~ In file included from gumbel_params/njn_localmaxstatutil.cpp:38: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:43: gumbel_params/njn_approx.hpp:72:70: error: use of undeclared identifier 'fabs' template bool approx (T x_, T y_, T eps_) {return fabs (x_ - y_) <= fabs (eps_);} ^ gumbel_params/njn_approx.hpp:74:85: note: in instantiation of function template specialization 'ncbi::blast::Njn::Approx::approx' requested here template bool absRelApprox (T x_, T y_, T tol_, T rtol_) {return approx (x_, y_, tol_) || relApprox (x_, y_, rtol_);} ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:43: gumbel_params/njn_root.hpp:387:25: note: in instantiation of function template specialization 'ncbi::blast::Njn::Approx::absRelApprox' requested here if (Approx::absRelApprox (p_, x, tol_, rtol_)) return x; ^ gumbel_params/njn_root.hpp:221:17: note: in instantiation of function template specialization 'ncbi::blast::Njn::Root::bisection' requested here return bisection (y_, f, ZERO, p_, q_, tol_, rtol_, itmax_); ^ 5 warnings and 1 error generated. make[1]: *** [lastex] Error 1 make[1]: Leaving directory `/build/last-align-sCRIyb/last-align-178/src' make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1133 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-3a5cd5d0-f547-4ca2-9e54-cc3281ffc1f6/build/last-align-sCRIyb Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 5756 Build-Time: 32 Distribution: lsid64c Fail-Stage: build Install-Time: 7 Job: last-align_178-1 Package: last-align Package-Time: 55 Source-Version: 178-1 Space: 5756 Status: attempted Version: 178-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1133 Build needed 00:00:55, 5756k disc space DC-Message: Failed, but took only 206.966093. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-112.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ last-align 178-1 (amd64) 11 Sep 2011 12:17 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: last-align Version: 178-1 Source Version: 178-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (64.0 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'last-align' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/last-align/trunk/ Need to get 308 kB of source archives. Get:1 http://localhost/debian/ sid/main last-align 178-1 (dsc) [2013 B] Get:2 http://localhost/debian/ sid/main last-align 178-1 (tar) [299 kB] Get:3 http://localhost/debian/ sid/main last-align 178-1 (diff) [7552 B] Fetched 308 kB in 0s (26.2 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/last-align-JWKTvE/resolver-tKdwJo/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/700 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-c3fec31a-de41-4ceb-8d7b-796ce4ced8c6/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, help2man (>= 1.36.4+nmu1), python-imaging Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, help2man (>= 1.36.4+nmu1), python-imaging dpkg-deb: building package `sbuild-build-depends-last-align-dummy' in `/build/last-align-JWKTvE/resolver-r5b2hP/apt_archive/sbuild-build-depends-last-align-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install last-align build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libdb4.8 libexpat1 libfreetype6 libglib2.0-0 libjpeg8 liblcms1 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-imaging python-minimal python2.6 python2.6-minimal Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff liblcms-utils www-browser libmail-box-perl python-doc python-tk python-imaging-doc python-imaging-dbg python2.6-doc binfmt-support Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libdb4.8 libexpat1 libfreetype6 libglib2.0-0 libjpeg8 liblcms1 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-imaging python-minimal python2.6 python2.6-minimal sbuild-build-depends-last-align-dummy 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 17.2 MB/17.2 MB of archives. After this operation, 53.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libssl1.0.0 liblocale-gettext-perl libpcre3 libfreetype6 libdb4.8 bsdmainutils groff-base man-db libmagic1 file gettext-base libsqlite3-0 libxml2 mime-support python2.6-minimal libexpat1 python2.6 python-minimal python html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper cdbs help2man libjpeg8 liblcms1 python-imaging sbuild-build-depends-last-align-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libssl1.0.0 amd64 1.0.0e-2 [1143 kB] Get:3 http://localhost/debian/ sid/main liblocale-gettext-perl amd64 1.05-7 [22.7 kB] Get:4 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:5 http://localhost/debian/ sid/main libfreetype6 amd64 2.4.6-2 [435 kB] Get:6 http://localhost/debian/ sid/main libdb4.8 amd64 4.8.30-9 [694 kB] Get:7 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:8 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:9 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:10 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:11 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:12 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:13 http://localhost/debian/ sid/main libsqlite3-0 amd64 3.7.7-2 [420 kB] Get:14 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:15 http://localhost/debian/ sid/main mime-support all 3.51-1 [35.0 kB] Get:16 http://localhost/debian/ sid/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:17 http://localhost/debian/ sid/main libexpat1 amd64 2.0.1-7 [137 kB] Get:18 http://localhost/debian/ sid/main python2.6 amd64 2.6.7-4 [2483 kB] Get:19 http://localhost/debian/ sid/main python-minimal all 2.6.7-3 [39.2 kB] Get:20 http://localhost/debian/ sid/main python all 2.6.7-3 [177 kB] Get:21 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:22 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:23 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:24 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:25 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:26 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:27 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:28 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:29 http://localhost/debian/ sid/main cdbs all 0.4.96 [75.8 kB] Get:30 http://localhost/debian/ sid/main help2man amd64 1.40.4 [89.5 kB] Get:31 http://localhost/debian/ sid/main libjpeg8 amd64 8c-2 [132 kB] Get:32 http://localhost/debian/ sid/main liblcms1 amd64 1.19.dfsg-1 [111 kB] Get:33 http://localhost/debian/ sid/main python-imaging amd64 1.1.7-4 [457 kB] Extracting templates from packages: 88% Extracting templates from packages: 100% Preconfiguring packages ... Fetched 17.2 MB in 0s (61.7 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libssl1.0.0. Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0e-2_amd64.deb) ... Selecting previously deselected package liblocale-gettext-perl. Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.6-2_amd64.deb) ... Selecting previously deselected package libdb4.8. Unpacking libdb4.8 (from .../libdb4.8_4.8.30-9_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... 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Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.96 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 help2man_1.40.4 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libffi5_3.0.10~rc10-3 libfreetype6_2.4.6-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libjpeg8_8c-2 liblcms1_1.19.dfsg-1 libllvm2.9_2.9+dfsg-3 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsqlite3-0_3.7.7-2 libss2_1.42~WIP-2011-07-02-1 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mime-support_3.51-1 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 python_2.6.7-3 python-imaging_1.1.7-4 python-minimal_2.6.7-3 python2.6_2.6.7-4 python2.6-minimal_2.6.7-4 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Jun 30 07:01:39 2011 CEST using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./last-align_178-1.dsc dpkg-source: info: extracting last-align in last-align-178 dpkg-source: info: unpacking last-align_178.orig.tar.gz dpkg-source: info: unpacking last-align_178-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package last-align dpkg-buildpackage: source version 178-1 dpkg-source --before-build last-align-178 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean make[1]: *** No rule to make target `clean'. make[1]: Entering directory `/build/last-align-JWKTvE/last-align-178' make[1]: Leaving directory `/build/last-align-JWKTvE/last-align-178' make: [makefile-clean] Error 2 (ignored) dh_clean rm -f src/lastdb src/lastal src/lastex src/*.o dpkg-source -b last-align-178 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building last-align using existing ./last-align_178.orig.tar.gz dpkg-source: info: building last-align in last-align_178-1.debian.tar.gz dpkg-source: info: building last-align in last-align_178-1.dsc debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" --directory src make[1]: Entering directory `/build/last-align-JWKTvE/last-align-178/src' g++ -Wall -W -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -g -O2 -g -O2 -Wall -o lastdb Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc SubsetSuffixArray.cc LastdbArguments.cc io.cc fileMap.cc SubsetSuffixArraySort.cc MultiSequenceQual.cc lastdb.cc MultiSequenceQual.cc:191:48: warning: array subscript is of type 'char' [-Wchar-subscripts] unsigned delimiterColumn = lettersToNumbers[' ']; ^~~~ 1 warning generated. gcc -g -O2 -g -O2 -Wall -c CA_code/lambda_calculator.c In file included from CA_code/lambda_calculator.c:12: CA_code/nrutil.c:207:37: warning: incompatible pointer types passing 'int **' to parameter of type 'double **' for(i=n1h;i>=n1l;i--) free_dmatrix(m[i],n2l,n2h,n3l,n3h); ^~~~ 1 warning generated. g++ -Wall -W -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -g -O2 -g -O2 -Wall -o lastal Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc SubsetSuffixArray.cc LastalArguments.cc io.cc fileMap.cc ScoreMatrix.cc DiagonalTable.cc SegmentPair.cc Alignment.cc XdropAligner.cc SegmentPairPot.cc AlignmentPot.cc GeneralizedAffineGapCosts.cc Centroid.cc LambdaCalculator.cc TwoQualityScoreMatrix.cc OneQualityScoreMatrix.cc QualityPssmMaker.cc GeneticCode.cc Xdrop3FrameAligner.cc gaplessXdrop.cc gaplessPssmXdrop.cc gaplessTwoQualityXdrop.cc AlignmentWrite.cc MultiSequenceQual.cc XdropAlignerPssm.cc lastal.cc lambda_calculator.o ScoreMatrix.cc:115:19: warning: array subscript is of type 'char' [-Wchar-subscripts] uchar z = encode[' ']; ^~~~ 1 warning generated. In file included from Alignment.cc:3: In file included from ./Alignment.hh:8: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from Alignment.cc:3: In file included from ./Alignment.hh:7: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ In file included from Alignment.cc:4: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from Alignment.cc:3: ./Alignment.hh:15:7: note: previous use is here class GeneralizedAffineGapCosts; ^ 2 warnings generated. In file included from XdropAligner.cc:4: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from XdropAligner.cc:3: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from XdropAligner.cc:5: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from XdropAligner.cc:3: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from AlignmentPot.cc:3: In file included from ./AlignmentPot.hh:8: In file included from ./Alignment.hh:8: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from AlignmentPot.cc:3: In file included from ./AlignmentPot.hh:8: In file included from ./Alignment.hh:7: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 1 warning generated. In file included from Centroid.cc:3: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from Centroid.cc:3: In file included from ./Centroid.hh:5: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from Centroid.cc:3: In file included from ./Centroid.hh:7: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from Centroid.cc:3: In file included from ./Centroid.hh:5: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from GeneticCode.cc:4: ./Alphabet.hh:19:1: warning: struct 'Alphabet' was previously declared as a class [-Wmismatched-tags] struct Alphabet{ ^~~~~~ class In file included from GeneticCode.cc:3: ./GeneticCode.hh:13:7: note: previous use is here class Alphabet; ^ 1 warning generated. In file included from Xdrop3FrameAligner.cc:5: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from Xdrop3FrameAligner.cc:3: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from Xdrop3FrameAligner.cc:6: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from Xdrop3FrameAligner.cc:3: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from AlignmentWrite.cc:3: In file included from ./Alignment.hh:8: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from AlignmentWrite.cc:3: In file included from ./Alignment.hh:7: In file included from ./Xdrop3FrameAligner.hh:12: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ In file included from AlignmentWrite.cc:6: ./Alphabet.hh:19:1: warning: struct 'Alphabet' was previously declared as a class [-Wmismatched-tags] struct Alphabet{ ^~~~~~ class In file included from AlignmentWrite.cc:4: ./GeneticCode.hh:13:7: note: previous use is here class Alphabet; ^ 2 warnings generated. MultiSequenceQual.cc:191:48: warning: array subscript is of type 'char' [-Wchar-subscripts] unsigned delimiterColumn = lettersToNumbers[' ']; ^~~~ 1 warning generated. In file included from XdropAlignerPssm.cc:4: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from XdropAlignerPssm.cc:3: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from XdropAlignerPssm.cc:5: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from XdropAlignerPssm.cc:3: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ 2 warnings generated. In file included from lastal.cc:13: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:1: warning: struct 'GeneralizedAffineGapCosts' was previously declared as a class [-Wmismatched-tags] struct GeneralizedAffineGapCosts{ ^~~~~~ class In file included from lastal.cc:13: In file included from ./Centroid.hh:5: ./XdropAligner.hh:19:7: note: previous use is here class GeneralizedAffineGapCosts; ^ In file included from lastal.cc:13: In file included from ./Centroid.hh:7: ./SegmentPair.hh:11:1: warning: struct 'SegmentPair' was previously declared as a class [-Wmismatched-tags] struct SegmentPair{ ^~~~~~ class In file included from lastal.cc:13: In file included from ./Centroid.hh:5: ./XdropAligner.hh:20:7: note: previous use is here class SegmentPair; ^ In file included from lastal.cc:15: In file included from ./AlignmentPot.hh:8: ./Alignment.hh:15:1: warning: class 'GeneralizedAffineGapCosts' was previously declared as a struct [-Wmismatched-tags] class GeneralizedAffineGapCosts; ^~~~~ struct In file included from lastal.cc:13: In file included from ./Centroid.hh:6: ./GeneralizedAffineGapCosts.hh:18:8: note: previous use is here struct GeneralizedAffineGapCosts{ ^ In file included from lastal.cc:20: ./Alphabet.hh:19:1: warning: struct 'Alphabet' was previously declared as a class [-Wmismatched-tags] struct Alphabet{ ^~~~~~ class In file included from lastal.cc:15: In file included from ./AlignmentPot.hh:8: ./Alignment.hh:17:7: note: previous use is here class Alphabet; ^ 4 warnings generated. g++ -Igumbel_params -g -O2 -g -O2 -Wall -o lastex Alphabet.cc LastexArguments.cc io.cc ScoreMatrix.cc lastex.cc gumbel_params/*.cpp ScoreMatrix.cc:115:19: warning: array subscript is of type 'char' [-Wchar-subscripts] uchar z = encode[' ']; ^~~~ 1 warning generated. In file included from lastex.cc:7: In file included from ./gumbel_params/mcf_local_alignment_evaluer.hpp:10: In file included from gumbel_params/sls_pvalues.hpp:52: gumbel_params/sls_normal_distr_array.hpp:47:15: warning: unused variable 'normal_distr_array_for_P_values_calculation' [-Wunused-variable] static double normal_distr_array_for_P_values_calculation[NORMAL_DISTR_ARRAY_DIM+1]={ ^ 1 warning generated. In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:3: In file included from gumbel_params/mcf_local_alignment_evaluer.hpp:10: In file included from gumbel_params/sls_pvalues.hpp:45: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:6: In file included from gumbel_params/sls_alp_sim.hpp:51: gumbel_params/sls_alp_data.hpp:515:35: warning: explicitly assigning a variable of type 'Int4' (aka 'int') to itself [-Wself-assign] v2=v2; ~~^~~ In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:3: In file included from gumbel_params/mcf_local_alignment_evaluer.hpp:10: In file included from gumbel_params/sls_pvalues.hpp:52: gumbel_params/sls_normal_distr_array.hpp:47:15: warning: unused variable 'normal_distr_array_for_P_values_calculation' [-Wunused-variable] static double normal_distr_array_for_P_values_calculation[NORMAL_DISTR_ARRAY_DIM+1]={ ^ In file included from gumbel_params/mcf_local_alignment_evaluer.cpp:6: In file included from gumbel_params/sls_alp_sim.hpp:51: gumbel_params/sls_alp_data.hpp:74:21: warning: unused variable 'small_long' [-Wunused-variable] static Int4 small_long=(Int4)((double)kMin_I4/2.0); ^ 4 warnings generated. In file included from gumbel_params/njn_dynprogprob.cpp:43: In file included from gumbel_params/njn_dynprogprob.hpp:43: In file included from gumbel_params/njn_dynprogprobproto.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ gumbel_params/njn_dynprogprob.cpp:214:12: warning: unused variable 'arrayPos' [-Wunused-variable] size_t arrayPos = 0; ^ 2 warnings generated. In file included from gumbel_params/njn_dynprogproblim.cpp:39: In file included from gumbel_params/njn_dynprogproblim.hpp:42: In file included from gumbel_params/njn_dynprogprob.hpp:43: In file included from gumbel_params/njn_dynprogprobproto.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: gumbel_params/njn_dynprogproblim.hpp:101:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy (const DynProgProbLim &dynProgProbLim_) ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: gumbel_params/njn_dynprogproblim.hpp:106:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy ( ^ In file included from gumbel_params/njn_dynprogproblim.cpp:39: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ gumbel_params/njn_dynprogproblim.cpp:157:12: warning: unused variable 'arrayPos' [-Wunused-variable] size_t arrayPos = 0; ^ 4 warnings generated. In file included from gumbel_params/njn_dynprogprobproto.cpp:38: In file included from gumbel_params/njn_dynprogprobproto.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ 1 warning generated. In file included from gumbel_params/njn_localmaxstat.cpp:38: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_localmaxstat.cpp:40: gumbel_params/sls_alp_data.hpp:515:35: warning: explicitly assigning a variable of type 'Int4' (aka 'int') to itself [-Wself-assign] v2=v2; ~~^~~ In file included from gumbel_params/njn_localmaxstat.cpp:43: gumbel_params/njn_dynprogproblim.hpp:101:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy (const DynProgProbLim &dynProgProbLim_) ^ In file included from gumbel_params/njn_localmaxstat.cpp:43: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstat.cpp:43: gumbel_params/njn_dynprogproblim.hpp:106:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy ( ^ In file included from gumbel_params/njn_localmaxstat.cpp:43: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstat.cpp:46: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:46: gumbel_params/njn_vector.hpp:240:14: warning: unused variable 'i' [-Wunused-variable] size_t i = 0; ^ gumbel_params/njn_localmaxstat.cpp:156:10: warning: unused variable 'value' [-Wunused-variable] Int4 value = 0; ^ gumbel_params/njn_localmaxstat.cpp:154:12: warning: unused variable 'j' [-Wunused-variable] size_t j = 0; ^ gumbel_params/njn_localmaxstat.cpp:155:10: warning: unused variable 'iter' [-Wunused-variable] Int4 iter = 0; ^ In file included from gumbel_params/njn_localmaxstat.cpp:40: gumbel_params/sls_alp_data.hpp:74:21: warning: unused variable 'small_long' [-Wunused-variable] static Int4 small_long=(Int4)((double)kMin_I4/2.0); ^ 9 warnings generated. In file included from gumbel_params/njn_localmaxstatmatrix.cpp:38: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_localmaxstatmatrix.cpp:41: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:46: gumbel_params/njn_vector.hpp:240:14: warning: unused variable 'i' [-Wunused-variable] size_t i = 0; ^ gumbel_params/njn_localmaxstatmatrix.cpp:147:12: warning: unused variable 'j' [-Wunused-variable] size_t j = 0; ^ 3 warnings generated. In file included from gumbel_params/njn_localmaxstatutil.cpp:38: In file included from gumbel_params/njn_localmaxstatutil.hpp:39: gumbel_params/corelib/ncbistl.hpp:24:53: warning: using directive refers to implicitly-defined namespace 'std' namespace NCBI_NS_NCBI { /* the fake one, +"std" */ NCBI_USING_NAMESPACE_STD; } ^ gumbel_params/corelib/ncbistl.hpp:14:50: note: instantiated from: #define NCBI_USING_NAMESPACE_STD using namespace NCBI_NS_STD ^ gumbel_params/corelib/ncbistl.hpp:12:22: note: instantiated from: #define NCBI_NS_STD std ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:38: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:46: gumbel_params/njn_vector.hpp:240:14: warning: unused variable 'i' [-Wunused-variable] size_t i = 0; ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: gumbel_params/njn_dynprogproblim.hpp:101:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy (const DynProgProbLim &dynProgProbLim_) ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: gumbel_params/njn_dynprogproblim.hpp:106:29: warning: 'ncbi::blast::Njn::DynProgProbLim::copy' hides overloaded virtual functions [-Woverloaded-virtual] virtual inline void copy ( ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:40: In file included from gumbel_params/njn_dynprogproblim.hpp:42: gumbel_params/njn_dynprogprob.hpp:122:29: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual inline void copy (const DynProgProb &dynProgProb_) ^ gumbel_params/njn_dynprogprob.hpp:130:22: note: hidden overloaded virtual function 'ncbi::blast::Njn::DynProgProb::copy' declared here virtual void copy ( ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:45: gumbel_params/sls_alp_data.hpp:515:35: warning: explicitly assigning a variable of type 'Int4' (aka 'int') to itself [-Wself-assign] v2=v2; ~~^~~ In file included from gumbel_params/njn_localmaxstatutil.cpp:38: In file included from gumbel_params/njn_localmaxstatutil.hpp:43: In file included from gumbel_params/njn_matrix.hpp:43: gumbel_params/njn_approx.hpp:72:70: error: use of undeclared identifier 'fabs' template bool approx (T x_, T y_, T eps_) {return fabs (x_ - y_) <= fabs (eps_);} ^ gumbel_params/njn_approx.hpp:74:85: note: in instantiation of function template specialization 'ncbi::blast::Njn::Approx::approx' requested here template bool absRelApprox (T x_, T y_, T tol_, T rtol_) {return approx (x_, y_, tol_) || relApprox (x_, y_, rtol_);} ^ In file included from gumbel_params/njn_localmaxstatutil.cpp:43: gumbel_params/njn_root.hpp:387:25: note: in instantiation of function template specialization 'ncbi::blast::Njn::Approx::absRelApprox' requested here if (Approx::absRelApprox (p_, x, tol_, rtol_)) return x; ^ gumbel_params/njn_root.hpp:221:17: note: in instantiation of function template specialization 'ncbi::blast::Njn::Root::bisection' requested here return bisection (y_, f, ZERO, p_, q_, tol_, rtol_, itmax_); ^ 5 warnings and 1 error generated. make[1]: *** [lastex] Error 1 make[1]: Leaving directory `/build/last-align-JWKTvE/last-align-178/src' make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1218 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-c3fec31a-de41-4ceb-8d7b-796ce4ced8c6/build/last-align-JWKTvE Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 5756 Build-Time: 25 Distribution: lsid64c Fail-Stage: build Install-Time: 6 Job: last-align_178-1 Package: last-align Package-Time: 41 Source-Version: 178-1 Space: 5756 Status: attempted Version: 178-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1218 Build needed 00:00:41, 5756k disc space DC-Build-Status: Failed 2891.229624s ### Content of /var/log/daemon.log ### Sep 11 10:47:44 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:47:58 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:20 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:33 talc-112 approx: Concurrent download of debian/dists/sid/main/source/Sources.xz is taking too long Sep 11 10:48:40 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:55 talc-112 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:48:56 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:06 talc-112 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:17 talc-112 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:32 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:48 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:52 talc-112 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:49:59 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 12:17:32 talc-112 approx: Nethttpd: Connection timed out ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 2891.229624 versus expected 32000 (r/m: 10.0679552168285 ; m: 2891.229624) DC-Build-Network: USED. See /tmp/rulesafter.Yz0tYG ! ************************************************************ # Generated by iptables-save v1.4.8 on Sun Sep 11 12:18:18 2011 *filter :INPUT ACCEPT [2480396:10651954120] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [907386:8862343714] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [554512:90132970] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [3137:302784] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [16:960] -A OUTPUT -j LD [16:960] -A LD -j LOG [16:960] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Sun Sep 11 12:18:18 2011 ************************************************************ --- /tmp/rulesbefore.UTRKgM 2011-09-11 11:30:07.418649511 +0200 +++ /tmp/rulesafter.Yz0tYG 2011-09-11 12:18:18.654649841 +0200 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Sun Sep 11 11:30:07 2011 +# Generated by iptables-save v1.4.8 on Sun Sep 11 12:18:18 2011 *filter -:INPUT ACCEPT [1352673:5170044124] +:INPUT ACCEPT [2480396:10651954120] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[332730:3919009982] -A OUTPUT -o lo -j ACCEPT +[907386:8862343714] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,10 +16,10 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[379923:31778262] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT -[1558:152572] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT -[12:720] -A OUTPUT -j LD -[12:720] -A LD -j LOG -[12:720] -A LD -j REJECT --reject-with icmp-port-unreachable +[554512:90132970] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[3137:302784] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[16:960] -A OUTPUT -j LD +[16:960] -A LD -j LOG +[16:960] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Sun Sep 11 11:30:07 2011 +# Completed on Sun Sep 11 12:18:18 2011 ************************************************************ [ 11.691326] processor LNXCPU:05: registered as cooling_device5 [ 11.703271] shpchp: Standard Hot Plug PCI Controller Driver version: 0.4 [ 11.767082] ACPI: SSDT 00000000bff0134a 0016E (v01 PmRef Cpu6Ist 00003000 INTL 20050228) [ 11.817352] processor LNXCPU:06: registered as cooling_device6 [ 11.852874] ACPI: SSDT 00000000bff014b8 0016E (v01 PmRef Cpu7Ist 00003000 INTL 20050228) [ 11.903161] processor LNXCPU:07: registered as cooling_device7 [ 11.915117] EDAC MC: Ver: 2.1.0 Mar 7 2011 [ 11.916208] EDAC MC0: Giving out device to 'i5400_edac.c' 'I5400': DEV 0000:00:10.0 [ 11.916227] EDAC PCI0: Giving out device to module 'i5400_edac' controller 'EDAC PCI controller': DEV '0000:00:10.0' (POLLED) [ 12.077456] intel_rng: FWH not detected [ 12.236261] i801_smbus 0000:00:1f.3: PCI INT B -> GSI 23 (level, low) -> IRQ 23 [ 12.443562] Adding 3911788k swap on /dev/sda1. Priority:-1 extents:1 across:3911788k [ 12.493226] EXT3 FS on sda3, internal journal [ 12.739210] kjournald starting. Commit interval 5 seconds [ 12.739353] EXT3 FS on sda5, internal journal [ 12.739358] EXT3-fs: mounted filesystem with ordered data mode. [ 13.177759] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.232048] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.234176] ADDRCONF(NETDEV_UP): eth0: link is not ready [ 16.264038] e1000e: eth0 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX/TX [ 16.313675] ADDRCONF(NETDEV_CHANGE): eth0: link becomes ready [ 26.404006] eth0: no IPv6 routers present [ 419.204404] RPC: Registered udp transport module. [ 419.232695] RPC: Registered tcp transport module. [ 419.260945] RPC: Registered tcp NFSv4.1 backchannel transport module. [ 419.331925] Slow work thread pool: Starting up [ 419.358667] Slow work thread pool: Ready [ 419.382250] FS-Cache: Loaded [ 419.425520] FS-Cache: Netfs 'nfs' registered for caching [ 419.463511] svc: failed to register lockdv1 RPC service (errno 97). [ 449.116809] Adding 296929352k swap on /dev/sda5. Priority:-2 extents:1 across:296929352k [ 465.489186] ip_tables: (C) 2000-2006 Netfilter Core Team [ 850.120202] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=27868 DF PROTO=TCP SPT=59348 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 853.209514] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=27869 DF PROTO=TCP SPT=59348 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 853.505127] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=23776 DF PROTO=TCP SPT=59913 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 930.832097] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=18953 DF PROTO=TCP SPT=45353 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 933.921023] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=18954 DF PROTO=TCP SPT=45353 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 934.220957] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=56991 DF PROTO=TCP SPT=59468 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2301.492919] Maximum lock depth 1024 reached task: ld-linux-x86-64 (29148) [ 2620.019712] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=57535 DF PROTO=TCP SPT=35817 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2623.112017] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=57536 DF PROTO=TCP SPT=35817 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2623.215999] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=51707 DF PROTO=TCP SPT=51170 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2698.222167] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=48814 DF PROTO=TCP SPT=35951 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2701.308760] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=48815 DF PROTO=TCP SPT=35951 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2701.412034] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=8013 DF PROTO=TCP SPT=51291 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 3238.366932] ld-linux-x86-64[1291] trap invalid opcode ip:2b04bab5ccf9 sp:7fff12c5e188 error:0 in ld.so[2b04bab49000+1f000] [ 4362.829194] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=26849 DF PROTO=TCP SPT=54706 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4404.551957] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=65277 DF PROTO=TCP SPT=54707 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4439.091584] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=10382 DF PROTO=TCP SPT=54708 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4471.484928] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=16410 DF PROTO=TCP SPT=54725 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************