DC-Build-Header: samtools 0.1.18-1 / Sun Sep 11 15:08:16 +0200 2011 Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-122.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ samtools 0.1.18-1 (amd64) 11 Sep 2011 15:28 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: samtools Version: 0.1.18-1 Source Version: 0.1.18-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (55.6 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: git://git.debian.org/debian-med/samtools.git Need to get 389 kB of source archives. Get:1 http://localhost/debian/ sid/main samtools 0.1.18-1 (dsc) [1946 B] Get:2 http://localhost/debian/ sid/main samtools 0.1.18-1 (tar) [379 kB] Get:3 http://localhost/debian/ sid/main samtools 0.1.18-1 (diff) [7593 B] Fetched 389 kB in 0s (2411 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/samtools-mPobBm/resolver-KNTmQo/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/698 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-0f6442cb-5105-4f6f-add8-8be928f7eb4b/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, quilt, libncurses5-dev, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, quilt, libncurses5-dev, zlib1g-dev dpkg-deb: building package `sbuild-build-depends-samtools-dummy' in `/build/samtools-mPobBm/resolver-UFlVDW/apt_archive/sbuild-build-depends-samtools-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install samtools build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libncurses5-dev libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff ncurses-doc www-browser libmail-box-perl procmail graphviz Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libncurses5-dev libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-samtools-dummy zlib1g-dev 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB/10.4 MB of archives. After this operation, 30.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 bsdmainutils groff-base man-db libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper cdbs diffstat libncurses5-dev quilt zlib1g-dev sbuild-build-depends-samtools-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:4 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:5 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:6 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:7 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:8 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:9 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:10 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:11 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:12 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:13 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:18 http://localhost/debian/ sid/main cdbs all 0.4.96 [75.8 kB] Get:19 http://localhost/debian/ sid/main diffstat amd64 1.54-1 [29.0 kB] Get:20 http://localhost/debian/ sid/main libncurses5-dev amd64 5.9-1 [507 kB] Get:21 http://localhost/debian/ sid/main quilt all 0.48-7 [354 kB] Get:22 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Preconfiguring packages ... Fetched 10.4 MB in 0s (54.6 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.54-1_amd64.deb) ... Selecting previously deselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.48-7_all.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously deselected package sbuild-build-depends-samtools-dummy. Unpacking sbuild-build-depends-samtools-dummy (from .../sbuild-build-depends-samtools-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libpcre3 (8.12-4) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up cdbs (0.4.96) ... Setting up diffstat (1.54-1) ... Setting up libncurses5-dev (5.9-1) ... Setting up quilt (0.48-7) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up sbuild-build-depends-samtools-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.96 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffstat_1.54-1 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 quilt_0.48-7 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-samtools-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue Sep 6 10:31:29 2011 CEST using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./samtools_0.1.18-1.dsc dpkg-source: info: extracting samtools in samtools-0.1.18 dpkg-source: info: unpacking samtools_0.1.18.orig.tar.bz2 dpkg-source: info: unpacking samtools_0.1.18-1.debian.tar.gz dpkg-source: info: applying no-pileup-tests.patch Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package samtools dpkg-buildpackage: source version 0.1.18-1 dpkg-source --before-build samtools-0.1.18 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -fPIC" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean make[1]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' make[2]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip samtools *~ *.a *.so.* *.so *.dylib make[2]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' make[2]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18/bcftools' rm -fr gmon.out *.o a.out *.dSYM bcftools *~ *.a bcf.aux bcf.log bcf.pdf *.class libbcf.*.dylib libbcf.so* make[2]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18/bcftools' make[2]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18/misc' rm -fr gmon.out *.o a.out *.exe *.dSYM md5sum-lite md5fa maq2sam-short maq2sam-long wgsim seqtk *~ *.a make[2]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18/misc' make[1]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' rm -f debian/stamp-makefile-check dh_clean /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/samtools-mPobBm/samtools-0.1.18/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi Removing patch no-pileup-tests.patch Restoring examples/Makefile No patches applied rm -rf ./.pc rm -f debian/stamp-patch* rm -f examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf dpkg-source -b samtools-0.1.18 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: warning: patches have not been applied, applying them now (use --no-preparation to override) dpkg-source: info: applying no-pileup-tests.patch dpkg-source: info: building samtools using existing ./samtools_0.1.18.orig.tar.bz2 dpkg-source: info: building samtools in samtools_0.1.18-1.debian.tar.gz dpkg-source: info: building samtools in samtools_0.1.18-1.dsc debian/rules build test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' cd . && QUILT_PATCHES=/build/samtools-mPobBm/samtools-0.1.18/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 File series fully applied, ends at patch no-pileup-tests.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -fPIC" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" all all-recur razip lib make[1]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' make[2]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18' gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bgzf.c -o bgzf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_aux.c -o bam_aux.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam.c -o bam.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_import.c -o bam_import.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam.c -o sam.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_index.c -o bam_index.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_pileup.c -o bam_pileup.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_lpileup.c -o bam_lpileup.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_md.c -o bam_md.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razf.c -o razf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. faidx.c -o faidx.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedidx.c -o bedidx.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_reheader.c -o bam_reheader.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kprobaln.c -o kprobaln.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_cat.c -o bam_cat.o ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o make[2]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' make[2]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18/bcftools' gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf.c -o bcf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. vcf.c -o vcf.o vcf.c:238:15: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign] endblock: i = i; ~ ^ ~ 1 warning generated. gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcfutils.c -o bcfutils.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. prob1.c -o prob1.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. em.c -o em.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kfunc.c -o kfunc.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kmin.c -o kmin.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. index.c -o index.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. fet.c -o fet.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. mut.c -o mut.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf2qcall.c -o bcf2qcall.o ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o make[2]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18/bcftools' make[2]: Entering directory `/build/samtools-mPobBm/samtools-0.1.18/misc' make[2]: Nothing to be done for `lib'. make[2]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18/misc' gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview.c -o bam_tview.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_plcmd.c -o bam_plcmd.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_view.c -o sam_view.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdup.c -o bam_rmdup.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdupse.c -o bam_rmdupse.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_mate.c -o bam_mate.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_stat.c -o bam_stat.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_color.c -o bam_color.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamtk.c -o bamtk.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kaln.c -o kaln.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf.c -o bam2bcf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf_indel.c -o bam2bcf_indel.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. errmod.c -o errmod.o errmod.c:79:8: warning: self-comparison always evaluates to false [-Wtautological-compare] if (m > m) return -1; ^ 1 warning generated. gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sample.c -o sample.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. cut_target.c -o cut_target.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. phase.c -o phase.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2depth.c -o bam2depth.o gcc -g -O2 -g -O2 -Wall -fPIC -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o -Lbcftools libbam.a -lbcf -lcurses -lm -lz libbam.a(bam_sort.o): In function `ks_combsort_heap': /build/samtools-mPobBm/samtools-0.1.18/bam_sort.c:53: undefined reference to `__ks_insertsort_heap' libbam.a(bam_sort.o): In function `ks_introsort_heap': /build/samtools-mPobBm/samtools-0.1.18/bam_sort.c:53: undefined reference to `__ks_insertsort_heap' libbam.a(bam_sort.o): In function `ks_combsort_sort': /build/samtools-mPobBm/samtools-0.1.18/bam_sort.c:309: undefined reference to `__ks_insertsort_sort' libbam.a(bam_sort.o): In function `ks_introsort_sort': /build/samtools-mPobBm/samtools-0.1.18/bam_sort.c:309: undefined reference to `__ks_insertsort_sort' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: *** [samtools] Error 1 make: *** [debian/stamp-makefile-build] Error 2 make[1]: Leaving directory `/build/samtools-mPobBm/samtools-0.1.18' dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1528 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-0f6442cb-5105-4f6f-add8-8be928f7eb4b/build/samtools-mPobBm Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 4060 Build-Time: 14 Distribution: lsid64c Fail-Stage: build Install-Time: 6 Job: samtools_0.1.18-1 Package: samtools Package-Time: 31 Source-Version: 0.1.18-1 Space: 4060 Status: attempted Version: 0.1.18-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1528 Build needed 00:00:31, 4060k disc space DC-Message: Failed, but took only 1234.009851. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-122.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ samtools 0.1.18-1 (amd64) 11 Sep 2011 15:40 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: samtools Version: 0.1.18-1 Source Version: 0.1.18-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (62.3 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: git://git.debian.org/debian-med/samtools.git Need to get 389 kB of source archives. Get:1 http://localhost/debian/ sid/main samtools 0.1.18-1 (dsc) [1946 B] Get:2 http://localhost/debian/ sid/main samtools 0.1.18-1 (tar) [379 kB] Get:3 http://localhost/debian/ sid/main samtools 0.1.18-1 (diff) [7593 B] Fetched 389 kB in 0s (28.0 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/samtools-TVxVQJ/resolver-ka_Rim/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/700 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-ec6d1d46-73b3-43ae-a79f-9ff1bef11a18/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, quilt, libncurses5-dev, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, quilt, libncurses5-dev, zlib1g-dev dpkg-deb: building package `sbuild-build-depends-samtools-dummy' in `/build/samtools-TVxVQJ/resolver-Tdky5m/apt_archive/sbuild-build-depends-samtools-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install samtools build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libncurses5-dev libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt zlib1g-dev Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff ncurses-doc www-browser libmail-box-perl procmail graphviz Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libncurses5-dev libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt sbuild-build-depends-samtools-dummy zlib1g-dev 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB/10.4 MB of archives. After this operation, 30.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 bsdmainutils groff-base man-db libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper cdbs diffstat libncurses5-dev quilt zlib1g-dev sbuild-build-depends-samtools-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:4 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:5 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:6 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:7 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:8 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:9 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:10 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:11 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:12 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:13 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:18 http://localhost/debian/ sid/main cdbs all 0.4.96 [75.8 kB] Get:19 http://localhost/debian/ sid/main diffstat amd64 1.54-1 [29.0 kB] Get:20 http://localhost/debian/ sid/main libncurses5-dev amd64 5.9-1 [507 kB] Get:21 http://localhost/debian/ sid/main quilt all 0.48-7 [354 kB] Get:22 http://localhost/debian/ sid/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Preconfiguring packages ... Fetched 10.4 MB in 0s (59.3 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.54-1_amd64.deb) ... Selecting previously deselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.48-7_all.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously deselected package sbuild-build-depends-samtools-dummy. Unpacking sbuild-build-depends-samtools-dummy (from .../sbuild-build-depends-samtools-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libpcre3 (8.12-4) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up cdbs (0.4.96) ... Setting up diffstat (1.54-1) ... Setting up libncurses5-dev (5.9-1) ... Setting up quilt (0.48-7) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up sbuild-build-depends-samtools-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.96 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffstat_1.54-1 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 quilt_0.48-7 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-samtools-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue Sep 6 10:31:29 2011 CEST using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./samtools_0.1.18-1.dsc dpkg-source: info: extracting samtools in samtools-0.1.18 dpkg-source: info: unpacking samtools_0.1.18.orig.tar.bz2 dpkg-source: info: unpacking samtools_0.1.18-1.debian.tar.gz dpkg-source: info: applying no-pileup-tests.patch Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package samtools dpkg-buildpackage: source version 0.1.18-1 dpkg-source --before-build samtools-0.1.18 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -fPIC" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean make[1]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[2]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip samtools *~ *.a *.so.* *.so *.dylib make[2]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[2]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18/bcftools' rm -fr gmon.out *.o a.out *.dSYM bcftools *~ *.a bcf.aux bcf.log bcf.pdf *.class libbcf.*.dylib libbcf.so* make[2]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18/bcftools' make[2]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18/misc' rm -fr gmon.out *.o a.out *.exe *.dSYM md5sum-lite md5fa maq2sam-short maq2sam-long wgsim seqtk *~ *.a make[2]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18/misc' make[1]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' rm -f debian/stamp-makefile-check dh_clean /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/samtools-TVxVQJ/samtools-0.1.18/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi Removing patch no-pileup-tests.patch Restoring examples/Makefile No patches applied rm -rf ./.pc rm -f debian/stamp-patch* rm -f examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf dpkg-source -b samtools-0.1.18 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: warning: patches have not been applied, applying them now (use --no-preparation to override) dpkg-source: info: applying no-pileup-tests.patch dpkg-source: info: building samtools using existing ./samtools_0.1.18.orig.tar.bz2 dpkg-source: info: building samtools in samtools_0.1.18-1.debian.tar.gz dpkg-source: info: building samtools in samtools_0.1.18-1.dsc debian/rules build test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' cd . && QUILT_PATCHES=/build/samtools-TVxVQJ/samtools-0.1.18/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 File series fully applied, ends at patch no-pileup-tests.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' /usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -fPIC" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" all all-recur razip lib make[1]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[2]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18' gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bgzf.c -o bgzf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_aux.c -o bam_aux.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam.c -o bam.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_import.c -o bam_import.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam.c -o sam.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_index.c -o bam_index.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_pileup.c -o bam_pileup.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_lpileup.c -o bam_lpileup.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_md.c -o bam_md.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razf.c -o razf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. faidx.c -o faidx.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedidx.c -o bedidx.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_reheader.c -o bam_reheader.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kprobaln.c -o kprobaln.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_cat.c -o bam_cat.o ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o make[2]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' make[2]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18/bcftools' gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf.c -o bcf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. vcf.c -o vcf.o vcf.c:238:15: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign] endblock: i = i; ~ ^ ~ 1 warning generated. gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcfutils.c -o bcfutils.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. prob1.c -o prob1.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. em.c -o em.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kfunc.c -o kfunc.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kmin.c -o kmin.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. index.c -o index.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. fet.c -o fet.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. mut.c -o mut.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf2qcall.c -o bcf2qcall.o ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o make[2]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18/bcftools' make[2]: Entering directory `/build/samtools-TVxVQJ/samtools-0.1.18/misc' make[2]: Nothing to be done for `lib'. make[2]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18/misc' gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview.c -o bam_tview.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_plcmd.c -o bam_plcmd.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_view.c -o sam_view.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdup.c -o bam_rmdup.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdupse.c -o bam_rmdupse.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_mate.c -o bam_mate.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_stat.c -o bam_stat.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_color.c -o bam_color.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamtk.c -o bamtk.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kaln.c -o kaln.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf.c -o bam2bcf.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf_indel.c -o bam2bcf_indel.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. errmod.c -o errmod.o errmod.c:79:8: warning: self-comparison always evaluates to false [-Wtautological-compare] if (m > m) return -1; ^ 1 warning generated. gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sample.c -o sample.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. cut_target.c -o cut_target.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. phase.c -o phase.o gcc -c -g -O2 -g -O2 -Wall -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2depth.c -o bam2depth.o gcc -g -O2 -g -O2 -Wall -fPIC -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o -Lbcftools libbam.a -lbcf -lcurses -lm -lz libbam.a(bam_sort.o): In function `ks_combsort_heap': /build/samtools-TVxVQJ/samtools-0.1.18/bam_sort.c:53: undefined reference to `__ks_insertsort_heap' libbam.a(bam_sort.o): In function `ks_introsort_heap': /build/samtools-TVxVQJ/samtools-0.1.18/bam_sort.c:53: undefined reference to `__ks_insertsort_heap' libbam.a(bam_sort.o): In function `ks_combsort_sort': /build/samtools-TVxVQJ/samtools-0.1.18/bam_sort.c:309: undefined reference to `__ks_insertsort_sort' libbam.a(bam_sort.o): In function `ks_introsort_sort': /build/samtools-TVxVQJ/samtools-0.1.18/bam_sort.c:309: undefined reference to `__ks_insertsort_sort' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: *** [samtools] Error 1 make[1]: Leaving directory `/build/samtools-TVxVQJ/samtools-0.1.18' make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1540 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-ec6d1d46-73b3-43ae-a79f-9ff1bef11a18/build/samtools-TVxVQJ Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 4060 Build-Time: 12 Distribution: lsid64c Fail-Stage: build Install-Time: 4 Job: samtools_0.1.18-1 Package: samtools Package-Time: 29 Source-Version: 0.1.18-1 Space: 4060 Status: attempted Version: 0.1.18-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1540 Build needed 00:00:29, 4060k disc space DC-Build-Status: Failed 1954.589423s ### Content of /var/log/daemon.log ### Sep 11 10:47:42 talc-122 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:47:53 talc-122 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:24 talc-122 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:31 talc-122 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:48:35 talc-122 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:48:55 talc-122 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:06 talc-122 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:10 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:21 talc-122 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:29 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:47 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:47 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.bz2 is taking too long Sep 11 10:49:58 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:09 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:20 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:37 talc-122 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:50:39 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:50:48 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.xz is taking too long Sep 11 10:51:05 talc-122 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:51:15 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en is taking too long Sep 11 10:51:22 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.xz is taking too long Sep 11 10:51:26 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en is taking too long Sep 11 10:51:28 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Translation-en.bz2 is taking too long Sep 11 14:25:53 talc-122 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 14:26:04 talc-122 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 14:26:21 talc-122 approx: Concurrent download of debian/dists/sid/main/source/Sources.diff/Index is taking too long Sep 11 14:27:00 talc-122 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.diff/Index is taking too long Sep 11 14:27:11 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 14:28:00 talc-122 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 14:29:00 talc-122 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 14:29:11 talc-122 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 14:29:22 talc-122 approx: Concurrent download of debian/dists/sid/Release is taking too long ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 1954.589423 versus expected 37 (r/m: 51.8267411621622 ; m: 37.0) DC-Build-Network: USED. See /tmp/rulesafter.N5qpLR ! ************************************************************ # Generated by iptables-save v1.4.8 on Sun Sep 11 15:40:51 2011 *filter :INPUT ACCEPT [6192425:42822666905] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [3102453:39909471747] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [17:1288] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [994808:157243596] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [9102:867128] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [326:19560] -A OUTPUT -j LD [326:19560] -A LD -j LOG [326:19560] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Sun Sep 11 15:40:51 2011 ************************************************************ --- /tmp/rulesbefore.wPd4we 2011-09-11 15:08:16.785899806 +0200 +++ /tmp/rulesafter.N5qpLR 2011-09-11 15:40:51.381900579 +0200 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Sun Sep 11 15:08:16 2011 +# Generated by iptables-save v1.4.8 on Sun Sep 11 15:40:51 2011 *filter -:INPUT ACCEPT [5718961:38589295725] +:INPUT ACCEPT [6192425:42822666905] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[2789941:35741556216] -A OUTPUT -o lo -j ACCEPT +[3102453:39909471747] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [17:1288] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,10 +16,10 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[966074:150173181] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT -[8375:798472] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[994808:157243596] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[9102:867128] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [326:19560] -A OUTPUT -j LD [326:19560] -A LD -j LOG [326:19560] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Sun Sep 11 15:08:16 2011 +# Completed on Sun Sep 11 15:40:51 2011 ************************************************************ [ 7269.584536] IN= OUT=eth0 SRC=172.16.66.122 DST=216.62.213.249 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=59840 DF PROTO=TCP SPT=44738 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7272.672022] IN= OUT=eth0 SRC=172.16.66.122 DST=216.62.213.249 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=59841 DF PROTO=TCP SPT=44738 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7273.482829] IN= OUT=eth0 SRC=172.16.66.122 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=9872 DF PROTO=TCP SPT=43969 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7276.568019] IN= OUT=eth0 SRC=172.16.66.122 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=9873 DF PROTO=TCP SPT=43969 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7276.659812] IN= OUT=eth0 SRC=172.16.66.122 DST=216.62.213.249 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=51851 DF PROTO=TCP SPT=44740 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7279.748019] IN= OUT=eth0 SRC=172.16.66.122 DST=216.62.213.249 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=51852 DF PROTO=TCP SPT=44740 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7279.840742] IN= OUT=eth0 SRC=172.16.66.122 DST=216.62.213.249 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=52058 DF PROTO=TCP SPT=44741 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7282.928017] IN= OUT=eth0 SRC=172.16.66.122 DST=216.62.213.249 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=52059 DF PROTO=TCP SPT=44741 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 8381.110211] clang[1070]: segfault at 1c ip 0000000000b60d28 sp 00007fff5afa8460 error 4 in clang[400000+8e1000] [ 9635.454188] clang[31795]: segfault at 1c ip 0000000000b60d28 sp 00007fff8f9d1f90 error 4 in clang[400000+8e1000] [10082.497132] clang[28011]: segfault at 8 ip 0000000000803627 sp 00007fff47c19980 error 4 in clang[400000+8e1000] [11155.713581] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=2327 DF PROTO=TCP SPT=33967 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11158.800051] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=2328 DF PROTO=TCP SPT=33967 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11158.889070] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=49930 DF PROTO=TCP SPT=33968 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11161.976021] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=49931 DF PROTO=TCP SPT=33968 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11162.067148] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=23841 DF PROTO=TCP SPT=33969 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11165.160018] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=23842 DF PROTO=TCP SPT=33969 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11165.249464] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=43340 DF PROTO=TCP SPT=33970 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11168.340524] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=43341 DF PROTO=TCP SPT=33970 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11168.433699] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=28163 DF PROTO=TCP SPT=33971 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11171.520023] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=28164 DF PROTO=TCP SPT=33971 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11171.609580] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=24671 DF PROTO=TCP SPT=33972 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11174.696522] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=24672 DF PROTO=TCP SPT=33972 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11174.787958] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=65520 DF PROTO=TCP SPT=33973 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11177.876521] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=65521 DF PROTO=TCP SPT=33973 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11177.966109] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=31178 DF PROTO=TCP SPT=33974 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11181.052520] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=31179 DF PROTO=TCP SPT=33974 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11181.147655] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=64958 DF PROTO=TCP SPT=33975 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11184.238593] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=64959 DF PROTO=TCP SPT=33975 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11184.328175] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=8019 DF PROTO=TCP SPT=33976 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11187.416520] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=8020 DF PROTO=TCP SPT=33976 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11187.508666] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=36352 DF PROTO=TCP SPT=33977 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11190.600516] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=36353 DF PROTO=TCP SPT=33977 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11190.689947] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=57478 DF PROTO=TCP SPT=33978 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11193.776517] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=57479 DF PROTO=TCP SPT=33978 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11193.867568] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=56271 DF PROTO=TCP SPT=33979 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11196.956525] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=56272 DF PROTO=TCP SPT=33979 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11197.046006] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=27626 DF PROTO=TCP SPT=33980 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11200.132018] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=27627 DF PROTO=TCP SPT=33980 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11200.222982] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=21740 DF PROTO=TCP SPT=33981 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11203.312020] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=21741 DF PROTO=TCP SPT=33981 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11203.401453] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=55404 DF PROTO=TCP SPT=33982 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11206.488018] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=55405 DF PROTO=TCP SPT=33982 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11206.580558] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=51048 DF PROTO=TCP SPT=33983 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11209.668520] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=51049 DF PROTO=TCP SPT=33983 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11209.758040] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=7491 DF PROTO=TCP SPT=33984 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11212.844019] IN= OUT=eth0 SRC=172.16.66.122 DST=208.78.244.32 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=7492 DF PROTO=TCP SPT=33984 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11845.610769] clang[7316]: segfault at 8 ip 0000000000803627 sp 00007fff56a79630 error 4 in clang[400000+8e1000] [12200.486856] IN= OUT=eth0 SRC=172.16.66.122 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=30952 DF PROTO=TCP SPT=33464 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [12203.573781] IN= OUT=eth0 SRC=172.16.66.122 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=30953 DF PROTO=TCP SPT=33464 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************