DC-Build-Header: seqan 1.2-1 / Sun Sep 11 12:47:21 +0200 2011 Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-112.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ seqan 1.2-1 (amd64) 11 Sep 2011 12:50 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: seqan Version: 1.2-1 Source Version: 1.2-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (62.0 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'seqan' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/seqan/trunk/ Need to get 3278 kB of source archives. Get:1 http://localhost/debian/ sid/main seqan 1.2-1 (dsc) [1851 B] Get:2 http://localhost/debian/ sid/main seqan 1.2-1 (tar) [3270 kB] Get:3 http://localhost/debian/ sid/main seqan 1.2-1 (diff) [6288 B] Fetched 3278 kB in 0s (8776 kB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/seqan-CezRGC/resolver-IuzHpL/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/700 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-2eb8e387-eedd-4f63-a4b7-161a59a5c3c3/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 5) Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 5) dpkg-deb: building package `sbuild-build-depends-seqan-dummy' in `/build/seqan-CezRGC/resolver-2K1haq/apt_archive/sbuild-build-depends-seqan-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install seqan build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff www-browser libmail-box-perl Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-seqan-dummy 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 9272 kB/9273 kB of archives. After this operation, 27.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 bsdmainutils groff-base man-db libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper cdbs sbuild-build-depends-seqan-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:4 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:5 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:6 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:7 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:8 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:9 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:10 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:11 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:12 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:13 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:18 http://localhost/debian/ sid/main cdbs all 0.4.96 [75.8 kB] Preconfiguring packages ... Fetched 9272 kB in 0s (50.5 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ... Selecting previously deselected package sbuild-build-depends-seqan-dummy. Unpacking sbuild-build-depends-seqan-dummy (from .../sbuild-build-depends-seqan-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libpcre3 (8.12-4) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up cdbs (0.4.96) ... Setting up sbuild-build-depends-seqan-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.96 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seqan-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Oct 1 00:55:41 2009 CEST using RSA key ID AA87AA77 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./seqan_1.2-1.dsc dpkg-source: info: extracting seqan in seqan-1.2 dpkg-source: info: unpacking seqan_1.2.orig.tar.gz dpkg-source: info: applying seqan_1.2-1.diff.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package seqan dpkg-buildpackage: source version 1.2-1 dpkg-source --before-build seqan-1.2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean rm -f -r debian/stamp-* dpkg-source -b seqan-1.2 dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1) dpkg-source: info: using source format `1.0' dpkg-source: info: building seqan using existing seqan_1.2.orig.tar.gz dpkg-source: info: building seqan in seqan_1.2-1.diff.gz dpkg-source: info: building seqan in seqan_1.2-1.dsc debian/rules build test -x debian/rules mkdir -p "." ( cd /build/seqan-CezRGC/seqan-1.2/apps && make ) make[1]: Entering directory `/build/seqan-CezRGC/seqan-1.2/apps' g++ -g -O2 -I.. -O9 -pedantic -W -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -lrt dfi/dfi.cpp -o dfi/dfi In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:27: In file included from ../seqan/basic.h:54: ../seqan/basic/basic_metaprogramming.h:117:32: warning: unused parameter 'arg' [-Wunused-parameter] static inline void body(Arg &arg, int I) {} ^ ../seqan/basic/basic_metaprogramming.h:117:41: warning: unused parameter 'I' [-Wunused-parameter] static inline void body(Arg &arg, int I) {} ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:27: In file included from ../seqan/basic.h:64: ../seqan/basic/basic_holder.h:607:34: warning: unused parameter 'me' [-Wunused-parameter] _holderAllocatePointer(THolder & me, TValue * data, False) // is a pointer to *one* object ^ ../seqan/basic/basic_holder.h:640:29: warning: unused parameter 'me' [-Wunused-parameter] _holderDeallocate(THolder & me, TValue * data, False) // is a pointer to *one* object ^ ../seqan/basic/basic_holder.h:640:42: warning: unused parameter 'data' [-Wunused-parameter] _holderDeallocate(THolder & me, TValue * data, False) // is a pointer to *one* object ^ ../seqan/basic/basic_holder.h:1221:38: warning: unused parameter 'me' [-Wunused-parameter] empty(Holder const & me) ^ ../seqan/basic/basic_holder.h:1231:42: warning: unused parameter 'me' [-Wunused-parameter] dependent(Holder const & me) ^ ../seqan/basic/basic_holder.h:1241:32: warning: unused parameter 'me' [-Wunused-parameter] clear(Holder & me) ^ ../seqan/basic/basic_holder.h:1250:33: warning: unused parameter 'me' [-Wunused-parameter] create(Holder & me) ^ ../seqan/basic/basic_holder.h:1270:33: warning: unused parameter 'me' [-Wunused-parameter] detach(Holder & me) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:27: In file included from ../seqan/basic.h:82: ../seqan/basic/basic_iterator.h:353:14: warning: unused parameter 'me' [-Wunused-parameter] position(T * me) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:44: ../seqan/sequence/segment_base.h:343:41: warning: unused parameter 'target' [-Wunused-parameter] operation_2_set(Segment & target, ^ ../seqan/sequence/segment_base.h:344:15: warning: unused parameter 'source' [-Wunused-parameter] TSource & source, ^ ../seqan/sequence/segment_base.h:830:14: warning: unused parameter '_value' [-Wunused-parameter] TValue & _value) ^ ../seqan/sequence/segment_base.h:873:14: warning: unused parameter '_value' [-Wunused-parameter] TValue & _value) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:52: ../seqan/sequence/string_base.h:713:37: warning: unused parameter 'me' [-Wunused-parameter] assignValue(String & me, ^ ../seqan/sequence/string_base.h:714:20: warning: unused parameter '_value' [-Wunused-parameter] TValue2 const & _value) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:53: ../seqan/sequence/string_pointer.h:300:19: warning: unused parameter 'container' [-Wunused-parameter] TValue const * container) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:56: ../seqan/sequence/string_cstyle.h:403:11: warning: unused parameter 'limit' [-Wunused-parameter] TSize limit, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:57: ../seqan/sequence/string_stack.h:353:42: warning: unused parameter 'me' [-Wunused-parameter] reserve(String > & me, ^ ../seqan/sequence/string_stack.h:367:22: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:58: ../seqan/sequence/string_packed.h:1063:12: warning: unused parameter 'tag' [-Wunused-parameter] Move tag) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:59: ../seqan/sequence/string_value_expand.h:249:84: warning: unused parameter 'me' [-Wunused-parameter] _getValueExpandFlagValue(String< TValue, ValueExpand > const & me) ^ ../seqan/sequence/string_value_expand.h:273:19: warning: unused parameter 'tag_' [-Wunused-parameter] Tag const tag_) ^ ../seqan/sequence/string_value_expand.h:284:19: warning: unused parameter 'tag_' [-Wunused-parameter] Tag const tag_ ) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:44: ../seqan/map/map_skiplist.h:493:20: warning: unused parameter 'height' [-Wunused-parameter] unsigned char height, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:36: In file included from ../seqan/modifier.h:53: ../seqan/modifier/modifier_reverse.h:285:23: warning: unused parameter 'container' [-Wunused-parameter] TContainer const & container) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:50: ../seqan/file/chunk_collector.h:323:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:332:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:472:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:484:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:497:22: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:509:22: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:58: ../seqan/file/file_array.h:92:14: warning: unused parameter 'dummy' [-Wunused-parameter] File(void *dummy = NULL) {} // to be compatible with the FILE*(NULL) constructor ^ ../seqan/file/file_array.h:105:14: warning: unused parameter 'dummy' [-Wunused-parameter] File(void *dummy = NULL) : // to be compatible with the FILE*(NULL) constructor ^ ../seqan/file/file_array.h:143:15: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (fileNo >= _oldFileCount) { ~~~~~~ ^ ~~~~~~~~~~~~~ ../seqan/file/file_array.h:145:39: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned i = _oldFileCount; i <= fileNo; ++i) ~ ^ ~~~~~~ ../seqan/file/file_array.h:250:59: warning: unused parameter 'openMode' [-Wunused-parameter] inline unsigned _sectorSizeFArray(TFileArray &me, int openMode) { ^ ../seqan/file/file_array.h:289:67: warning: unused parameter 'me' [-Wunused-parameter] inline unsigned length(File< Striped<_FileCount, TFile> > const &me) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:60: In file included from ../seqan/system.h:67: ../seqan/system/system_sema.h:82:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_init(hSemaphore, 0, init)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:82:26: note: instantiated from: SEQAN_DO_SYS(!sem_init(hSemaphore, 0, init)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:86:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_destroy(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:86:26: note: instantiated from: SEQAN_DO_SYS(!sem_destroy(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:90:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_wait(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:90:26: note: instantiated from: SEQAN_DO_SYS(!sem_wait(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:94:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_post(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:94:26: note: instantiated from: SEQAN_DO_SYS(!sem_post(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:77: ../seqan/file/file_format_raw.h:230:18: warning: unused parameter 'file' [-Wunused-parameter] readMeta(TFile & file, ^ ../seqan/file/file_format_raw.h:245:16: warning: unused parameter 'file' [-Wunused-parameter] goNext(TFile & file, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:79: ../seqan/file/file_format_embl.h:46:6: error: default arguments cannot be added to a function template that has already been declared bool skip_meta = true) ^ ~~~~ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:44: ../seqan/file/file_generated_forwards.h:918:72: note: previous template declaration is here template inline void goBegin(Iter > & it, bool skip_meta ); // "projects/library/seqan/file/file_format_embl.h"(47) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:80: ../seqan/file/file_format_genbank.h:45:69: error: default arguments cannot be added to a function template that has already been declared goBegin(Iter > & it, bool skip_meta = true) ^ ~~~~ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:44: ../seqan/file/file_generated_forwards.h:922:72: note: previous template declaration is here template inline void goBegin(Iter > & it, bool skip_meta ); // "projects/library/seqan/file/file_format_genbank.h"(46) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:83: ../seqan/file/file_format_fasta_align.h:223:23: warning: unused parameter 'file' [-Wunused-parameter] void readMeta(TFile & file, TMeta & meta, FastaAlign) { ^ ../seqan/file/file_format_fasta_align.h:233:21: warning: unused parameter 'file' [-Wunused-parameter] void goNext(TFile & file, FastaAlign) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:85: ../seqan/file/file_format_sam.h:176:30: warning: comparison of integers of different signs: 'unsigned int' and 'const int' [-Wsign-compare] for (unsigned int i = 0; i < refPosition; ++i){ ~ ^ ~~~~~~~~~~~ ../seqan/file/file_format_sam.h:182:46: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = (refPosition + 1); i < nrOfReads; ++i){ ~ ^ ~~~~~~~~~ ../seqan/file/file_format_sam.h:174:16: warning: unused variable 'refID' [-Wunused-variable] unsigned int refID = getValue(IDs, refPosition); ^ ../seqan/file/file_format_sam.h:282:43: warning: '&&' within '||' [-Wlogical-op-parentheses] for (; false and ref_col_pos != ref_end or !atEnd(read_col_pos); goNext(ref_col_pos), goNext(read_col_pos)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ../seqan/file/file_format_sam.h:282:43: note: place parentheses around the '&&' expression to silence this warning for (; false and ref_col_pos != ref_end or !atEnd(read_col_pos); goNext(ref_col_pos), goNext(read_col_pos)) { ^ ( ) ../seqan/file/file_format_sam.h:371:11: warning: unused parameter 'target' [-Wunused-parameter] TFile & target, ^ ../seqan/file/file_format_sam.h:372:39: warning: unused parameter 'source' [-Wunused-parameter] Align const & source, ^ ../seqan/file/file_format_sam.h:373:7: warning: unused parameter 'ref' [-Wunused-parameter] int ref, ^ ../seqan/file/file_format_sam.h:374:7: warning: unused parameter 'read' [-Wunused-parameter] int read, ^ ../seqan/file/file_format_sam.h:375:22: warning: unused parameter 'refName' [-Wunused-parameter] const CharString & refName, ^ ../seqan/file/file_format_sam.h:376:22: warning: unused parameter 'readName' [-Wunused-parameter] const CharString & readName, ^ ../seqan/file/file_format_sam.h:406:40: warning: unused parameter 'data' [-Wunused-parameter] Align & data, ^ ../seqan/file/file_format_sam.h:407:20: warning: unused parameter 'meta' [-Wunused-parameter] SAMMeta & meta, ^ ../seqan/file/file_format_sam.h:496:30: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; i < countTagsInLine; ++i){ ~ ^ ~~~~~~~~~~~~~~~ ../seqan/file/file_format_sam.h:530:54: warning: unused parameter 'cat' [-Wunused-parameter] const CharString & cat, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:88: ../seqan/file/file_format_cgviz.h:48:21: warning: unused parameter 'file' [-Wunused-parameter] void goNext(TFile & file, CGViz) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:99: ../seqan/file/string_external.h:1712:52: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_external.h:1712:68: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_external.h:1712:82: warning: unused parameter 'openMode' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_external.h:1720:52: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_external.h:1720:68: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_external.h:1728:52: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ ../seqan/file/string_external.h:1728:80: warning: unused parameter 'file' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:100: ../seqan/file/string_mmap.h:671:48: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_mmap.h:671:64: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_mmap.h:671:78: warning: unused parameter 'openMode' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_mmap.h:679:48: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_mmap.h:679:64: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_mmap.h:687:48: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ ../seqan/file/string_mmap.h:687:76: warning: unused parameter 'file' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:101: ../seqan/file/file_format_mmap.h:547:68: warning: '&&' within '||' [-Wlogical-op-parentheses] suffix(fname, len - length(standalone_name)) == standalone_name || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ../seqan/file/file_format_mmap.h:547:68: note: place parentheses around the '&&' expression to silence this warning suffix(fname, len - length(standalone_name)) == standalone_name || ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:48: ../seqan/pipe/pipe_iterator.h:228:29: warning: unused parameter 'pipe' [-Wunused-parameter] end(Pipe< TInput, TSpec > &pipe) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:52: ../seqan/pipe/pipe_edit_environment.h:305:12: warning: unused variable 'seqs' [-Wunused-variable] unsigned seqs = countSequences(me.in); ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:56: ../seqan/pipe/pipe_sampler.h:268:86: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Sampler > &me, ControlEof const &command) { ^ ../seqan/pipe/pipe_sampler.h:484:115: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Multi, TPair, TLimitsString> > &me, ControlEof const &command) { ^ ../seqan/pipe/pipe_sampler.h:489:115: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Multi, TPair, TLimitsString> > &me, ControlEos const &command) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:57: ../seqan/pipe/pipe_shifter.h:139:99: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Shifter< delta, omitBlank, _echoing > > &me, ControlEof const &command) { ^ ../seqan/pipe/pipe_shifter.h:144:99: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Shifter< delta, omitBlank, _echoing > > &me, ControlEos const &command) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:58: ../seqan/pipe/pipe_source.h:358:53: warning: unused parameter 'me' [-Wunused-parameter] inline bool control(Pipe< TInput, Source > &me, TCommand const &) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:64: ../seqan/pipe/pool_base.h:708:26: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_ownFile = open(file, fileName)) ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../seqan/pipe/pool_base.h:708:26: note: use '==' to turn this assignment into an equality comparison if (_ownFile = open(file, fileName)) ^ == ../seqan/pipe/pool_base.h:708:26: note: place parentheses around the assignment to silence this warning if (_ownFile = open(file, fileName)) ^ ( ) ../seqan/pipe/pool_base.h:920:29: warning: unused parameter 'pool' [-Wunused-parameter] end(Pool< TValue, TSpec > &pool) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:33: In file included from ../seqan/score.h:32: ../seqan/score/score_base.h:148:8: warning: unused parameter 'pos1' [-Wunused-parameter] TPos1 pos1, ^ ../seqan/score/score_base.h:149:8: warning: unused parameter 'pos2' [-Wunused-parameter] TPos2 pos2, ^ ../seqan/score/score_base.h:150:15: warning: unused parameter 'seq1' [-Wunused-parameter] TSeq1 const &seq1, ^ ../seqan/score/score_base.h:151:15: warning: unused parameter 'seq2' [-Wunused-parameter] TSeq2 const &seq2) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:33: In file included from ../seqan/score.h:40: ../seqan/score/score_pam_matrix.h:80:67: warning: unused parameter '_member' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:80:124: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:132:127: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:177:135: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:218:135: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:259:134: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:306:137: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:351:136: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:33: In file included from ../seqan/score.h:41: ../seqan/score/score_pam.h:562:72: warning: unused parameter '_score' [-Wunused-parameter] void _extendAlphabetPam(Score > & _score, _TempMembersPam & _member){ ^ ../seqan/score/score_pam.h:562:122: warning: unused parameter '_member' [-Wunused-parameter] void _extendAlphabetPam(Score > & _score, _TempMembersPam & _member){ ^ ../seqan/score/score_pam.h:859:69: warning: unused parameter '_roundType' [-Wunused-parameter] TValue roundConvert(TSource to_round, Score _roundType){ ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:34: In file included from ../seqan/graph_types.h:48: ../seqan/graph_types/graph_impl_automaton.h:439:33: warning: unused parameter 'target' [-Wunused-parameter] TVertexDescriptor const target, ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:34: In file included from ../seqan/graph_types.h:49: ../seqan/graph_types/graph_impl_wordgraph.h:137:77: warning: unused parameter 'g' [-Wunused-parameter] addEdge(Graph, WordGraph > >& g, ^ ../seqan/graph_types/graph_impl_wordgraph.h:138:27: warning: unused parameter 'source' [-Wunused-parameter] TVertexDescriptor const source, ^ ../seqan/graph_types/graph_impl_wordgraph.h:139:27: warning: unused parameter 'target' [-Wunused-parameter] TVertexDescriptor const target, ^ ../seqan/graph_types/graph_impl_wordgraph.h:140:16: warning: unused parameter 'label' [-Wunused-parameter] TLabel const label, ^ ../seqan/graph_types/graph_impl_wordgraph.h:141:20: warning: unused parameter 'cargo' [-Wunused-parameter] TEdgeCargo const cargo) ^ ../seqan/graph_types/graph_impl_wordgraph.h:154:27: warning: unused parameter 'target' [-Wunused-parameter] TVertexDescriptor const target, ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:45: ../seqan/find/find_pattern_base.h:363:44: warning: unused parameter 'me' [-Wunused-parameter] setScoringScheme(Pattern & me, ^ ../seqan/find/find_pattern_base.h:364:16: warning: unused parameter 'score' [-Wunused-parameter] TScore2 & score) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:83: ../seqan/find/find_quasar.h:108:54: warning: unused parameter 'me' [-Wunused-parameter] inline void _patternInit (Pattern & me) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:61: ../seqan/index/index_sa_btree.h:55:20: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; i < treeLevels; ++i) ~ ^ ~~~~~~~~~~ ../seqan/index/index_sa_btree.h:60:21: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; i < treeLevels; ++i) { ~ ^ ~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:63: ../seqan/index/index_sa_mm.h:166:18: error: default arguments cannot be added to a function template that has already been declared unsigned K = ValueSize< typename Value::Type >::VALUE) ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:52: ../seqan/index/index_generated_forwards.h:1889:70: note: previous template declaration is here template inline void createSuffixArrayPart( TSA &SA, TText &s, ManberMyers const &alg, TSize maxLCP, unsigned K ); // "projects/library/seqan/index/index_sa_mm.h"(167) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:67: ../seqan/index/pipe_merger3.h:59:43: warning: '&&' within '||' [-Wlogical-op-parentheses] return (i0.i3[0] < i12.i3[0] || ^ ../seqan/index/pipe_merger3.h:59:43: note: place parentheses around the '&&' expression to silence this warning return (i0.i3[0] < i12.i3[0] || ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:68: ../seqan/index/index_skew3.h:110:40: warning: '&&' within '||' [-Wlogical-op-parentheses] return (a.i3[0] < b.i3[0] || ^ ../seqan/index/index_skew3.h:110:40: note: place parentheses around the '&&' expression to silence this warning return (a.i3[0] < b.i3[0] || ^ ../seqan/index/index_skew3.h:297:12: warning: unused parameter 'K' [-Wunused-parameter] unsigned K, ^ ../seqan/index/index_skew3.h:298:18: warning: unused parameter 'maxdepth' [-Wunused-parameter] unsigned maxdepth) ^ ../seqan/index/index_skew3.h:314:33: warning: '&&' within '||' [-Wlogical-op-parentheses] return (lexLess(a1, b1) || a1 == b1 && a2 <= b2); ^ ~~~~~~~~~~~~~~~~~~~~ ../seqan/index/index_skew3.h:314:33: note: place parentheses around the '&&' expression to silence this warning return (lexLess(a1, b1) || a1 == b1 && a2 <= b2); ^ ( ) ../seqan/index/index_skew3.h:320:33: warning: '&&' within '||' [-Wlogical-op-parentheses] return (lexLess(a1, b1) || a1 == b1 && _leqSkew3(a2,a3, b2,b3)); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/index/index_skew3.h:320:33: note: place parentheses around the '&&' expression to silence this warning return (lexLess(a1, b1) || a1 == b1 && _leqSkew3(a2,a3, b2,b3)); ^ ( ) ../seqan/index/index_skew3.h:500:18: error: default arguments cannot be added to a function template that has already been declared unsigned K = ValueSize< typename Value::Type >::VALUE) ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:52: ../seqan/index/index_generated_forwards.h:1890:70: note: previous template declaration is here template inline void createSuffixArrayPart( TSA &SA, TText &s, Skew3 const &_dummy, TSize maxLCP, unsigned K ); // "projects/library/seqan/index/index_skew3.h"(501) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:72: ../seqan/index/index_skew7.h:414:12: warning: unused parameter 'K' [-Wunused-parameter] unsigned K, ^ ../seqan/index/index_skew7.h:415:18: warning: unused parameter 'maxdepth' [-Wunused-parameter] unsigned maxdepth) ^ ../seqan/index/index_skew7.h:821:18: error: default arguments cannot be added to a function template that has already been declared unsigned K = ValueSize< typename Value::Type >::VALUE) ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:52: ../seqan/index/index_generated_forwards.h:1888:70: note: previous template declaration is here template inline void createSuffixArrayPart( TSA &SA, TText &s, Skew7 const &_dummy, TSize maxLCP, unsigned K ); // "projects/library/seqan/index/index_skew7.h"(822) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:94: ../seqan/index/index_qgram.h:1360:11: warning: unused parameter 'shape' [-Wunused-parameter] TShape &shape) ^ ../seqan/index/index_qgram.h:1446:11: warning: unused parameter 'shape' [-Wunused-parameter] TShape &shape, ^ ../seqan/index/index_qgram.h:1560:17: warning: unused parameter 'alg' [-Wunused-parameter] Default const alg) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:102: ../seqan/index/index_shims.h:514:47: warning: unused parameter 'index' [-Wunused-parameter] inline bool indexCreate(Index &index, Fibre_LCPE, TSpecAlg const alg) { ^ ../seqan/index/index_shims.h:514:81: warning: unused parameter 'alg' [-Wunused-parameter] inline bool indexCreate(Index &index, Fibre_LCPE, TSpecAlg const alg) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:105: ../seqan/index/index_find.h:119:51: warning: unused parameter 'container_' [-Wunused-parameter] typename _Parameter >::Type container_) ^ ../seqan/index/index_find.h:129:51: warning: unused parameter 'container_' [-Wunused-parameter] typename _Parameter >::Type container_) ^ 129 warnings and 5 errors generated. make[1]: *** [dfi/dfi] Error 1 make[1]: Leaving directory `/build/seqan-CezRGC/seqan-1.2/apps' make: *** [debian/stamp-build-seqan-apps] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1251 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-2eb8e387-eedd-4f63-a4b7-161a59a5c3c3/build/seqan-CezRGC Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 21320 Build-Time: 5 Distribution: lsid64c Fail-Stage: build Install-Time: 5 Job: seqan_1.2-1 Package: seqan Package-Time: 20 Source-Version: 1.2-1 Space: 21320 Status: attempted Version: 1.2-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1251 Build needed 00:00:20, 21320k disc space DC-Message: Failed, but took only 230.83184. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on talc-112.nancy.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ seqan 1.2-1 (amd64) 11 Sep 2011 13:25 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: seqan Version: 1.2-1 Source Version: 1.2-1 Distribution: lsid64c Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Hit http://localhost sid Release.gpg Hit http://localhost sid Release Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Hit http://localhost sid/main Sources Hit http://localhost sid/main amd64 Packages Ign http://localhost sid/main Translation-en Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev multiarch-support 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 1073 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc6-dev libc-dev-bin libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 multiarch-support Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libc6-dev amd64 2.13-20 [2637 kB] Get:2 http://localhost/debian/ sid/main libc-dev-bin amd64 2.13-20 [217 kB] Get:3 http://localhost/debian/ sid/main libgomp1 amd64 4.6.1-10 [25.7 kB] Get:4 http://localhost/debian/ sid/main gcc-4.6-base amd64 4.6.1-10 [135 kB] Get:5 http://localhost/debian/ sid/main libgcc1 amd64 1:4.6.1-10 [42.9 kB] Get:6 http://localhost/debian/ sid/main cpp-4.6 amd64 4.6.1-10 [4816 kB] Get:7 http://localhost/debian/ sid/main libquadmath0 amd64 4.6.1-10 [126 kB] Get:8 http://localhost/debian/ sid/main libstdc++6-4.6-dev amd64 4.6.1-10 [1660 kB] Get:9 http://localhost/debian/ sid/main g++-4.6 amd64 4.6.1-10 [6952 kB] Get:10 http://localhost/debian/ sid/main gcc-4.6 amd64 4.6.1-10 [7303 kB] Get:11 http://localhost/debian/ sid/main libstdc++6 amd64 4.6.1-10 [337 kB] Get:12 http://localhost/debian/ sid/main binutils amd64 2.21.53.20110910-1 [4844 kB] Get:13 http://localhost/debian/ sid/main libc-bin amd64 2.13-20 [819 kB] Get:14 http://localhost/debian/ sid/main libc6 amd64 2.13-20 [4323 kB] Get:15 http://localhost/debian/ sid/main multiarch-support amd64 2.13-20 [141 kB] Preconfiguring packages ... Fetched 34.4 MB in 0s (64.0 MB/s) (Reading database ... 10788 files and directories currently installed.) Preparing to replace libc6-dev 2.13-18 (using .../libc6-dev_2.13-20_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-18 (using .../libc-dev-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libgomp1 4.6.1-9 (using .../libgomp1_4.6.1-10_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9 (using .../gcc-4.6-base_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9 (using .../libgcc1_1%3a4.6.1-10_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-10) ... (Reading database ... 10788 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9 (using .../cpp-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9 (using .../libquadmath0_4.6.1-10_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9 (using .../libstdc++6-4.6-dev_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9 (using .../g++-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9 (using .../gcc-4.6_4.6.1-10_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9 (using .../libstdc++6_4.6.1-10_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-10) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace binutils 2.21.53.20110823-3 (using .../binutils_2.21.53.20110910-1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-18 (using .../libc-bin_2.13-20_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace libc6 2.13-18 (using .../libc6_2.13-20_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20) ... (Reading database ... 10801 files and directories currently installed.) Preparing to replace multiarch-support 2.13-18 (using .../multiarch-support_2.13-20_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-20) ... Setting up libc-dev-bin (2.13-20) ... Setting up libc6-dev (2.13-20) ... Setting up libgomp1 (4.6.1-10) ... Setting up cpp-4.6 (4.6.1-10) ... Setting up libquadmath0 (4.6.1-10) ... Setting up binutils (2.21.53.20110910-1) ... Setting up gcc-4.6 (4.6.1-10) ... Setting up libstdc++6-4.6-dev (4.6.1-10) ... Setting up g++-4.6 (4.6.1-10) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'seqan' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/seqan/trunk/ Need to get 3278 kB of source archives. Get:1 http://localhost/debian/ sid/main seqan 1.2-1 (dsc) [1851 B] Get:2 http://localhost/debian/ sid/main seqan 1.2-1 (tar) [3270 kB] Get:3 http://localhost/debian/ sid/main seqan 1.2-1 (diff) [6288 B] Fetched 3278 kB in 0s (57.7 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/seqan-rg6XR6/resolver-xkjCiV/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously deselected package sbuild-build-depends-core-dummy. (Reading database ... 10801 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64c-7402d496-cfe7-4d8b-a53d-01d19c5b3ee8/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 5) Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 5) dpkg-deb: building package `sbuild-build-depends-seqan-dummy' in `/build/seqan-rg6XR6/resolver-t_zEC3/apt_archive/sbuild-build-depends-seqan-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install seqan build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc groff www-browser libmail-box-perl Recommended packages: autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-seqan-dummy 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 9272 kB/9273 kB of archives. After this operation, 27.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 bsdmainutils groff-base man-db libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper cdbs sbuild-build-depends-seqan-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-3 [37.9 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:4 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:5 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-2 [1023 kB] Get:6 http://localhost/debian/ sid/main libmagic1 amd64 5.08-1 [246 kB] Get:7 http://localhost/debian/ sid/main file amd64 5.08-1 [51.7 kB] Get:8 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-4 [154 kB] Get:9 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-4 [892 kB] Get:10 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:11 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.28.6-1 [1648 kB] Get:12 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-1 [125 kB] Get:13 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-4 [437 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-4 [2079 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu1 [223 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.6 [562 kB] Get:18 http://localhost/debian/ sid/main cdbs all 0.4.96 [75.8 kB] Preconfiguring packages ... Fetched 9272 kB in 0s (61.3 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 10801 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.08-1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ... Selecting previously deselected package sbuild-build-depends-seqan-dummy. Unpacking sbuild-build-depends-seqan-dummy (from .../sbuild-build-depends-seqan-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-3) ... Setting up libpcre3 (8.12-4) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up gettext-base (0.18.1.1-4) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up html2text (1.3.2a-15) ... Setting up libglib2.0-0 (2.28.6-1) ... No schema files found: doing nothing. Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.6) ... Setting up cdbs (0.4.96) ... Setting up sbuild-build-depends-seqan-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.21.53.20110910-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-10 gcc-4.6_4.6.1-10 libc6-dev_2.13-20 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 linux-libc-dev_3.0.0-3 Package versions: apt_0.8.15.6 apt-utils_0.8.15.6 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110910-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.96 clang_2.9-11 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-10 dash_0.5.7-1 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18-1 file_5.08-1 findutils_4.4.2-1+b1 g++_4:4.6.1-2 g++-4.6_4.6.1-10 gcc_4:4.6.1-2 gcc-4.6_4.6.1-10 gcc-4.6-base_4.6.1-10 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-20 libc-dev-bin_2.13-20 libc6_2.13-20 libc6-dev_2.13-20 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libffi5_3.0.10~rc10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-10 libgdbm3_1.8.3-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-10 libllvm2.9_2.9+dfsg-3 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.08-1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-6 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-4 libpipeline1_1.2.0-3 libquadmath0_4.6.1-10 libreadline6_6.2-4 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-10 libstdc++6-4.6-dev_4.6.1-10 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-4 linux-libc-dev_3.0.0-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-20 ncurses-base_5.9-1 ncurses-bin_5.9-1 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 readline-common_6.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seqan-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tzdata_2011i-2 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-2 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Oct 1 00:55:41 2009 CEST using RSA key ID AA87AA77 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./seqan_1.2-1.dsc dpkg-source: info: extracting seqan in seqan-1.2 dpkg-source: info: unpacking seqan_1.2.orig.tar.gz dpkg-source: info: applying seqan_1.2-1.diff.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: source package seqan dpkg-buildpackage: source version 1.2-1 dpkg-source --before-build seqan-1.2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean rm -f -r debian/stamp-* dpkg-source -b seqan-1.2 dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1) dpkg-source: info: using source format `1.0' dpkg-source: info: building seqan using existing seqan_1.2.orig.tar.gz dpkg-source: info: building seqan in seqan_1.2-1.diff.gz dpkg-source: info: building seqan in seqan_1.2-1.dsc debian/rules build test -x debian/rules mkdir -p "." ( cd /build/seqan-rg6XR6/seqan-1.2/apps && make ) make[1]: Entering directory `/build/seqan-rg6XR6/seqan-1.2/apps' g++ -g -O2 -I.. -O9 -pedantic -W -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -lrt dfi/dfi.cpp -o dfi/dfi In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:27: In file included from ../seqan/basic.h:54: ../seqan/basic/basic_metaprogramming.h:117:32: warning: unused parameter 'arg' [-Wunused-parameter] static inline void body(Arg &arg, int I) {} ^ ../seqan/basic/basic_metaprogramming.h:117:41: warning: unused parameter 'I' [-Wunused-parameter] static inline void body(Arg &arg, int I) {} ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:27: In file included from ../seqan/basic.h:64: ../seqan/basic/basic_holder.h:607:34: warning: unused parameter 'me' [-Wunused-parameter] _holderAllocatePointer(THolder & me, TValue * data, False) // is a pointer to *one* object ^ ../seqan/basic/basic_holder.h:640:29: warning: unused parameter 'me' [-Wunused-parameter] _holderDeallocate(THolder & me, TValue * data, False) // is a pointer to *one* object ^ ../seqan/basic/basic_holder.h:640:42: warning: unused parameter 'data' [-Wunused-parameter] _holderDeallocate(THolder & me, TValue * data, False) // is a pointer to *one* object ^ ../seqan/basic/basic_holder.h:1221:38: warning: unused parameter 'me' [-Wunused-parameter] empty(Holder const & me) ^ ../seqan/basic/basic_holder.h:1231:42: warning: unused parameter 'me' [-Wunused-parameter] dependent(Holder const & me) ^ ../seqan/basic/basic_holder.h:1241:32: warning: unused parameter 'me' [-Wunused-parameter] clear(Holder & me) ^ ../seqan/basic/basic_holder.h:1250:33: warning: unused parameter 'me' [-Wunused-parameter] create(Holder & me) ^ ../seqan/basic/basic_holder.h:1270:33: warning: unused parameter 'me' [-Wunused-parameter] detach(Holder & me) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:27: In file included from ../seqan/basic.h:82: ../seqan/basic/basic_iterator.h:353:14: warning: unused parameter 'me' [-Wunused-parameter] position(T * me) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:44: ../seqan/sequence/segment_base.h:343:41: warning: unused parameter 'target' [-Wunused-parameter] operation_2_set(Segment & target, ^ ../seqan/sequence/segment_base.h:344:15: warning: unused parameter 'source' [-Wunused-parameter] TSource & source, ^ ../seqan/sequence/segment_base.h:830:14: warning: unused parameter '_value' [-Wunused-parameter] TValue & _value) ^ ../seqan/sequence/segment_base.h:873:14: warning: unused parameter '_value' [-Wunused-parameter] TValue & _value) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:52: ../seqan/sequence/string_base.h:713:37: warning: unused parameter 'me' [-Wunused-parameter] assignValue(String & me, ^ ../seqan/sequence/string_base.h:714:20: warning: unused parameter '_value' [-Wunused-parameter] TValue2 const & _value) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:53: ../seqan/sequence/string_pointer.h:300:19: warning: unused parameter 'container' [-Wunused-parameter] TValue const * container) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:56: ../seqan/sequence/string_cstyle.h:403:11: warning: unused parameter 'limit' [-Wunused-parameter] TSize limit, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:57: ../seqan/sequence/string_stack.h:353:42: warning: unused parameter 'me' [-Wunused-parameter] reserve(String > & me, ^ ../seqan/sequence/string_stack.h:367:22: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:58: ../seqan/sequence/string_packed.h:1063:12: warning: unused parameter 'tag' [-Wunused-parameter] Move tag) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:30: In file included from ../seqan/sequence.h:59: ../seqan/sequence/string_value_expand.h:249:84: warning: unused parameter 'me' [-Wunused-parameter] _getValueExpandFlagValue(String< TValue, ValueExpand > const & me) ^ ../seqan/sequence/string_value_expand.h:273:19: warning: unused parameter 'tag_' [-Wunused-parameter] Tag const tag_) ^ ../seqan/sequence/string_value_expand.h:284:19: warning: unused parameter 'tag_' [-Wunused-parameter] Tag const tag_ ) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:25: In file included from ../seqan/map.h:44: ../seqan/map/map_skiplist.h:493:20: warning: unused parameter 'height' [-Wunused-parameter] unsigned char height, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:36: In file included from ../seqan/modifier.h:53: ../seqan/modifier/modifier_reverse.h:285:23: warning: unused parameter 'container' [-Wunused-parameter] TContainer const & container) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:50: ../seqan/file/chunk_collector.h:323:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:332:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:472:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:484:24: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:497:22: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ ../seqan/file/chunk_collector.h:509:22: warning: unused parameter 'tag' [-Wunused-parameter] Tag const tag) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:58: ../seqan/file/file_array.h:92:14: warning: unused parameter 'dummy' [-Wunused-parameter] File(void *dummy = NULL) {} // to be compatible with the FILE*(NULL) constructor ^ ../seqan/file/file_array.h:105:14: warning: unused parameter 'dummy' [-Wunused-parameter] File(void *dummy = NULL) : // to be compatible with the FILE*(NULL) constructor ^ ../seqan/file/file_array.h:143:15: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (fileNo >= _oldFileCount) { ~~~~~~ ^ ~~~~~~~~~~~~~ ../seqan/file/file_array.h:145:39: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned i = _oldFileCount; i <= fileNo; ++i) ~ ^ ~~~~~~ ../seqan/file/file_array.h:250:59: warning: unused parameter 'openMode' [-Wunused-parameter] inline unsigned _sectorSizeFArray(TFileArray &me, int openMode) { ^ ../seqan/file/file_array.h:289:67: warning: unused parameter 'me' [-Wunused-parameter] inline unsigned length(File< Striped<_FileCount, TFile> > const &me) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:60: In file included from ../seqan/system.h:67: ../seqan/system/system_sema.h:82:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_init(hSemaphore, 0, init)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:82:26: note: instantiated from: SEQAN_DO_SYS(!sem_init(hSemaphore, 0, init)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:86:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_destroy(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:86:26: note: instantiated from: SEQAN_DO_SYS(!sem_destroy(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:90:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_wait(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:90:26: note: instantiated from: SEQAN_DO_SYS(!sem_wait(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:94:13: warning: expression result unused [-Wunused-value] SEQAN_DO_SYS(!sem_post(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/system/system_sema.h:94:26: note: instantiated from: SEQAN_DO_SYS(!sem_post(hSemaphore)); ^~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:77: ../seqan/file/file_format_raw.h:230:18: warning: unused parameter 'file' [-Wunused-parameter] readMeta(TFile & file, ^ ../seqan/file/file_format_raw.h:245:16: warning: unused parameter 'file' [-Wunused-parameter] goNext(TFile & file, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:79: ../seqan/file/file_format_embl.h:46:6: error: default arguments cannot be added to a function template that has already been declared bool skip_meta = true) ^ ~~~~ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:44: ../seqan/file/file_generated_forwards.h:918:72: note: previous template declaration is here template inline void goBegin(Iter > & it, bool skip_meta ); // "projects/library/seqan/file/file_format_embl.h"(47) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:80: ../seqan/file/file_format_genbank.h:45:69: error: default arguments cannot be added to a function template that has already been declared goBegin(Iter > & it, bool skip_meta = true) ^ ~~~~ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:44: ../seqan/file/file_generated_forwards.h:922:72: note: previous template declaration is here template inline void goBegin(Iter > & it, bool skip_meta ); // "projects/library/seqan/file/file_format_genbank.h"(46) ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:83: ../seqan/file/file_format_fasta_align.h:223:23: warning: unused parameter 'file' [-Wunused-parameter] void readMeta(TFile & file, TMeta & meta, FastaAlign) { ^ ../seqan/file/file_format_fasta_align.h:233:21: warning: unused parameter 'file' [-Wunused-parameter] void goNext(TFile & file, FastaAlign) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:85: ../seqan/file/file_format_sam.h:176:30: warning: comparison of integers of different signs: 'unsigned int' and 'const int' [-Wsign-compare] for (unsigned int i = 0; i < refPosition; ++i){ ~ ^ ~~~~~~~~~~~ ../seqan/file/file_format_sam.h:182:46: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = (refPosition + 1); i < nrOfReads; ++i){ ~ ^ ~~~~~~~~~ ../seqan/file/file_format_sam.h:174:16: warning: unused variable 'refID' [-Wunused-variable] unsigned int refID = getValue(IDs, refPosition); ^ ../seqan/file/file_format_sam.h:282:43: warning: '&&' within '||' [-Wlogical-op-parentheses] for (; false and ref_col_pos != ref_end or !atEnd(read_col_pos); goNext(ref_col_pos), goNext(read_col_pos)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ../seqan/file/file_format_sam.h:282:43: note: place parentheses around the '&&' expression to silence this warning for (; false and ref_col_pos != ref_end or !atEnd(read_col_pos); goNext(ref_col_pos), goNext(read_col_pos)) { ^ ( ) ../seqan/file/file_format_sam.h:371:11: warning: unused parameter 'target' [-Wunused-parameter] TFile & target, ^ ../seqan/file/file_format_sam.h:372:39: warning: unused parameter 'source' [-Wunused-parameter] Align const & source, ^ ../seqan/file/file_format_sam.h:373:7: warning: unused parameter 'ref' [-Wunused-parameter] int ref, ^ ../seqan/file/file_format_sam.h:374:7: warning: unused parameter 'read' [-Wunused-parameter] int read, ^ ../seqan/file/file_format_sam.h:375:22: warning: unused parameter 'refName' [-Wunused-parameter] const CharString & refName, ^ ../seqan/file/file_format_sam.h:376:22: warning: unused parameter 'readName' [-Wunused-parameter] const CharString & readName, ^ ../seqan/file/file_format_sam.h:406:40: warning: unused parameter 'data' [-Wunused-parameter] Align & data, ^ ../seqan/file/file_format_sam.h:407:20: warning: unused parameter 'meta' [-Wunused-parameter] SAMMeta & meta, ^ ../seqan/file/file_format_sam.h:496:30: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; i < countTagsInLine; ++i){ ~ ^ ~~~~~~~~~~~~~~~ ../seqan/file/file_format_sam.h:530:54: warning: unused parameter 'cat' [-Wunused-parameter] const CharString & cat, ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:88: ../seqan/file/file_format_cgviz.h:48:21: warning: unused parameter 'file' [-Wunused-parameter] void goNext(TFile & file, CGViz) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:99: ../seqan/file/string_external.h:1712:52: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_external.h:1712:68: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_external.h:1712:82: warning: unused parameter 'openMode' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_external.h:1720:52: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_external.h:1720:68: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_external.h:1728:52: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ ../seqan/file/string_external.h:1728:80: warning: unused parameter 'file' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:100: ../seqan/file/string_mmap.h:671:48: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_mmap.h:671:64: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_mmap.h:671:78: warning: unused parameter 'openMode' [-Wunused-parameter] save(String > const &me, const char *fileName, int openMode) { ^ ../seqan/file/string_mmap.h:679:48: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_mmap.h:679:64: warning: unused parameter 'fileName' [-Wunused-parameter] save(String > const &me, const char *fileName) { ^ ../seqan/file/string_mmap.h:687:48: warning: unused parameter 'me' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ ../seqan/file/string_mmap.h:687:76: warning: unused parameter 'file' [-Wunused-parameter] save(String > const &me, typename TConfig::TFile file) { ^ In file included from dfi/dfi.cpp:26: In file included from ../seqan/misc/misc_cmdparser.h:27: In file included from ../seqan/file.h:101: ../seqan/file/file_format_mmap.h:547:68: warning: '&&' within '||' [-Wlogical-op-parentheses] suffix(fname, len - length(standalone_name)) == standalone_name || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ../seqan/file/file_format_mmap.h:547:68: note: place parentheses around the '&&' expression to silence this warning suffix(fname, len - length(standalone_name)) == standalone_name || ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:48: ../seqan/pipe/pipe_iterator.h:228:29: warning: unused parameter 'pipe' [-Wunused-parameter] end(Pipe< TInput, TSpec > &pipe) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:52: ../seqan/pipe/pipe_edit_environment.h:305:12: warning: unused variable 'seqs' [-Wunused-variable] unsigned seqs = countSequences(me.in); ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:56: ../seqan/pipe/pipe_sampler.h:268:86: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Sampler > &me, ControlEof const &command) { ^ ../seqan/pipe/pipe_sampler.h:484:115: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Multi, TPair, TLimitsString> > &me, ControlEof const &command) { ^ ../seqan/pipe/pipe_sampler.h:489:115: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Multi, TPair, TLimitsString> > &me, ControlEos const &command) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:57: ../seqan/pipe/pipe_shifter.h:139:99: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Shifter< delta, omitBlank, _echoing > > &me, ControlEof const &command) { ^ ../seqan/pipe/pipe_shifter.h:144:99: warning: unused parameter 'command' [-Wunused-parameter] inline bool control(Pipe< TInput, Shifter< delta, omitBlank, _echoing > > &me, ControlEos const &command) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:58: ../seqan/pipe/pipe_source.h:358:53: warning: unused parameter 'me' [-Wunused-parameter] inline bool control(Pipe< TInput, Source > &me, TCommand const &) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:28: In file included from ../seqan/pipe.h:64: ../seqan/pipe/pool_base.h:708:26: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_ownFile = open(file, fileName)) ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../seqan/pipe/pool_base.h:708:26: note: use '==' to turn this assignment into an equality comparison if (_ownFile = open(file, fileName)) ^ == ../seqan/pipe/pool_base.h:708:26: note: place parentheses around the assignment to silence this warning if (_ownFile = open(file, fileName)) ^ ( ) ../seqan/pipe/pool_base.h:920:29: warning: unused parameter 'pool' [-Wunused-parameter] end(Pool< TValue, TSpec > &pool) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:33: In file included from ../seqan/score.h:32: ../seqan/score/score_base.h:148:8: warning: unused parameter 'pos1' [-Wunused-parameter] TPos1 pos1, ^ ../seqan/score/score_base.h:149:8: warning: unused parameter 'pos2' [-Wunused-parameter] TPos2 pos2, ^ ../seqan/score/score_base.h:150:15: warning: unused parameter 'seq1' [-Wunused-parameter] TSeq1 const &seq1, ^ ../seqan/score/score_base.h:151:15: warning: unused parameter 'seq2' [-Wunused-parameter] TSeq2 const &seq2) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:33: In file included from ../seqan/score.h:40: ../seqan/score/score_pam_matrix.h:80:67: warning: unused parameter '_member' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:80:124: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:132:127: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:177:135: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:218:135: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:259:134: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:306:137: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ ../seqan/score/score_pam_matrix.h:351:136: warning: unused parameter '_score' [-Wunused-parameter] void _starting_data_pam(_TempMembersPam & _member, Score > & _score){ ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:33: In file included from ../seqan/score.h:41: ../seqan/score/score_pam.h:562:72: warning: unused parameter '_score' [-Wunused-parameter] void _extendAlphabetPam(Score > & _score, _TempMembersPam & _member){ ^ ../seqan/score/score_pam.h:562:122: warning: unused parameter '_member' [-Wunused-parameter] void _extendAlphabetPam(Score > & _score, _TempMembersPam & _member){ ^ ../seqan/score/score_pam.h:859:69: warning: unused parameter '_roundType' [-Wunused-parameter] TValue roundConvert(TSource to_round, Score _roundType){ ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:34: In file included from ../seqan/graph_types.h:48: ../seqan/graph_types/graph_impl_automaton.h:439:33: warning: unused parameter 'target' [-Wunused-parameter] TVertexDescriptor const target, ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:34: In file included from ../seqan/graph_types.h:49: ../seqan/graph_types/graph_impl_wordgraph.h:137:77: warning: unused parameter 'g' [-Wunused-parameter] addEdge(Graph, WordGraph > >& g, ^ ../seqan/graph_types/graph_impl_wordgraph.h:138:27: warning: unused parameter 'source' [-Wunused-parameter] TVertexDescriptor const source, ^ ../seqan/graph_types/graph_impl_wordgraph.h:139:27: warning: unused parameter 'target' [-Wunused-parameter] TVertexDescriptor const target, ^ ../seqan/graph_types/graph_impl_wordgraph.h:140:16: warning: unused parameter 'label' [-Wunused-parameter] TLabel const label, ^ ../seqan/graph_types/graph_impl_wordgraph.h:141:20: warning: unused parameter 'cargo' [-Wunused-parameter] TEdgeCargo const cargo) ^ ../seqan/graph_types/graph_impl_wordgraph.h:154:27: warning: unused parameter 'target' [-Wunused-parameter] TVertexDescriptor const target, ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:45: ../seqan/find/find_pattern_base.h:363:44: warning: unused parameter 'me' [-Wunused-parameter] setScoringScheme(Pattern & me, ^ ../seqan/find/find_pattern_base.h:364:16: warning: unused parameter 'score' [-Wunused-parameter] TScore2 & score) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:31: In file included from ../seqan/find.h:83: ../seqan/find/find_quasar.h:108:54: warning: unused parameter 'me' [-Wunused-parameter] inline void _patternInit (Pattern & me) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:61: ../seqan/index/index_sa_btree.h:55:20: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; i < treeLevels; ++i) ~ ^ ~~~~~~~~~~ ../seqan/index/index_sa_btree.h:60:21: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; i < treeLevels; ++i) { ~ ^ ~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:63: ../seqan/index/index_sa_mm.h:166:18: error: default arguments cannot be added to a function template that has already been declared unsigned K = ValueSize< typename Value::Type >::VALUE) ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:52: ../seqan/index/index_generated_forwards.h:1889:70: note: previous template declaration is here template inline void createSuffixArrayPart( TSA &SA, TText &s, ManberMyers const &alg, TSize maxLCP, unsigned K ); // "projects/library/seqan/index/index_sa_mm.h"(167) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:67: ../seqan/index/pipe_merger3.h:59:43: warning: '&&' within '||' [-Wlogical-op-parentheses] return (i0.i3[0] < i12.i3[0] || ^ ../seqan/index/pipe_merger3.h:59:43: note: place parentheses around the '&&' expression to silence this warning return (i0.i3[0] < i12.i3[0] || ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:68: ../seqan/index/index_skew3.h:110:40: warning: '&&' within '||' [-Wlogical-op-parentheses] return (a.i3[0] < b.i3[0] || ^ ../seqan/index/index_skew3.h:110:40: note: place parentheses around the '&&' expression to silence this warning return (a.i3[0] < b.i3[0] || ^ ../seqan/index/index_skew3.h:297:12: warning: unused parameter 'K' [-Wunused-parameter] unsigned K, ^ ../seqan/index/index_skew3.h:298:18: warning: unused parameter 'maxdepth' [-Wunused-parameter] unsigned maxdepth) ^ ../seqan/index/index_skew3.h:314:33: warning: '&&' within '||' [-Wlogical-op-parentheses] return (lexLess(a1, b1) || a1 == b1 && a2 <= b2); ^ ~~~~~~~~~~~~~~~~~~~~ ../seqan/index/index_skew3.h:314:33: note: place parentheses around the '&&' expression to silence this warning return (lexLess(a1, b1) || a1 == b1 && a2 <= b2); ^ ( ) ../seqan/index/index_skew3.h:320:33: warning: '&&' within '||' [-Wlogical-op-parentheses] return (lexLess(a1, b1) || a1 == b1 && _leqSkew3(a2,a3, b2,b3)); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../seqan/index/index_skew3.h:320:33: note: place parentheses around the '&&' expression to silence this warning return (lexLess(a1, b1) || a1 == b1 && _leqSkew3(a2,a3, b2,b3)); ^ ( ) ../seqan/index/index_skew3.h:500:18: error: default arguments cannot be added to a function template that has already been declared unsigned K = ValueSize< typename Value::Type >::VALUE) ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:52: ../seqan/index/index_generated_forwards.h:1890:70: note: previous template declaration is here template inline void createSuffixArrayPart( TSA &SA, TText &s, Skew3 const &_dummy, TSize maxLCP, unsigned K ); // "projects/library/seqan/index/index_skew3.h"(501) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:72: ../seqan/index/index_skew7.h:414:12: warning: unused parameter 'K' [-Wunused-parameter] unsigned K, ^ ../seqan/index/index_skew7.h:415:18: warning: unused parameter 'maxdepth' [-Wunused-parameter] unsigned maxdepth) ^ ../seqan/index/index_skew7.h:821:18: error: default arguments cannot be added to a function template that has already been declared unsigned K = ValueSize< typename Value::Type >::VALUE) ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:52: ../seqan/index/index_generated_forwards.h:1888:70: note: previous template declaration is here template inline void createSuffixArrayPart( TSA &SA, TText &s, Skew7 const &_dummy, TSize maxLCP, unsigned K ); // "projects/library/seqan/index/index_skew7.h"(822) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:94: ../seqan/index/index_qgram.h:1360:11: warning: unused parameter 'shape' [-Wunused-parameter] TShape &shape) ^ ../seqan/index/index_qgram.h:1446:11: warning: unused parameter 'shape' [-Wunused-parameter] TShape &shape, ^ ../seqan/index/index_qgram.h:1560:17: warning: unused parameter 'alg' [-Wunused-parameter] Default const alg) ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:102: ../seqan/index/index_shims.h:514:47: warning: unused parameter 'index' [-Wunused-parameter] inline bool indexCreate(Index &index, Fibre_LCPE, TSpecAlg const alg) { ^ ../seqan/index/index_shims.h:514:81: warning: unused parameter 'alg' [-Wunused-parameter] inline bool indexCreate(Index &index, Fibre_LCPE, TSpecAlg const alg) { ^ In file included from dfi/dfi.cpp:27: In file included from ../seqan/index.h:105: ../seqan/index/index_find.h:119:51: warning: unused parameter 'container_' [-Wunused-parameter] typename _Parameter >::Type container_) ^ ../seqan/index/index_find.h:129:51: warning: unused parameter 'container_' [-Wunused-parameter] typename _Parameter >::Type container_) ^ 129 warnings and 5 errors generated. make[1]: *** [dfi/dfi] Error 1 make[1]: Leaving directory `/build/seqan-rg6XR6/seqan-1.2/apps' make: *** [debian/stamp-build-seqan-apps] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20110911-1325 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64c-7402d496-cfe7-4d8b-a53d-01d19c5b3ee8/build/seqan-rg6XR6 Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 21320 Build-Time: 3 Distribution: lsid64c Fail-Stage: build Install-Time: 4 Job: seqan_1.2-1 Package: seqan Package-Time: 17 Source-Version: 1.2-1 Space: 21320 Status: attempted Version: 1.2-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20110911-1325 Build needed 00:00:17, 21320k disc space DC-Build-Status: Failed 2291.298352s ### Content of /var/log/daemon.log ### Sep 11 10:47:44 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:47:58 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:20 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:33 talc-112 approx: Concurrent download of debian/dists/sid/main/source/Sources.xz is taking too long Sep 11 10:48:40 talc-112 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Sep 11 10:48:55 talc-112 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:48:56 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:06 talc-112 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:17 talc-112 approx: Concurrent download of debian/dists/sid/Release is taking too long Sep 11 10:49:32 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:48 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 10:49:52 talc-112 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Sep 11 10:49:59 talc-112 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Sep 11 12:17:32 talc-112 approx: Nethttpd: Connection timed out ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 2291.298352 versus expected 272 (r/m: 7.423891 ; m: 272.0) DC-Build-Network: USED. See /tmp/rulesafter.oUKTtN ! ************************************************************ # Generated by iptables-save v1.4.8 on Sun Sep 11 13:25:32 2011 *filter :INPUT ACCEPT [3643521:17132234971] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [1354697:14664869094] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [760197:153466266] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [5226:501400] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [16:960] -A OUTPUT -j LD [16:960] -A LD -j LOG [16:960] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Sun Sep 11 13:25:32 2011 ************************************************************ --- /tmp/rulesbefore.CrJfNm 2011-09-11 12:47:21.190399616 +0200 +++ /tmp/rulesafter.oUKTtN 2011-09-11 13:25:32.495148650 +0200 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Sun Sep 11 12:47:21 2011 +# Generated by iptables-save v1.4.8 on Sun Sep 11 13:25:32 2011 *filter -:INPUT ACCEPT [3268932:14837733163] +:INPUT ACCEPT [3643521:17132234971] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[1186215:12450291392] -A OUTPUT -o lo -j ACCEPT +[1354697:14664869094] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,10 +16,10 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[727263:102977070] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT -[4122:395864] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[760197:153466266] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[5226:501400] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [16:960] -A OUTPUT -j LD [16:960] -A LD -j LOG [16:960] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Sun Sep 11 12:47:21 2011 +# Completed on Sun Sep 11 13:25:32 2011 ************************************************************ [ 11.691326] processor LNXCPU:05: registered as cooling_device5 [ 11.703271] shpchp: Standard Hot Plug PCI Controller Driver version: 0.4 [ 11.767082] ACPI: SSDT 00000000bff0134a 0016E (v01 PmRef Cpu6Ist 00003000 INTL 20050228) [ 11.817352] processor LNXCPU:06: registered as cooling_device6 [ 11.852874] ACPI: SSDT 00000000bff014b8 0016E (v01 PmRef Cpu7Ist 00003000 INTL 20050228) [ 11.903161] processor LNXCPU:07: registered as cooling_device7 [ 11.915117] EDAC MC: Ver: 2.1.0 Mar 7 2011 [ 11.916208] EDAC MC0: Giving out device to 'i5400_edac.c' 'I5400': DEV 0000:00:10.0 [ 11.916227] EDAC PCI0: Giving out device to module 'i5400_edac' controller 'EDAC PCI controller': DEV '0000:00:10.0' (POLLED) [ 12.077456] intel_rng: FWH not detected [ 12.236261] i801_smbus 0000:00:1f.3: PCI INT B -> GSI 23 (level, low) -> IRQ 23 [ 12.443562] Adding 3911788k swap on /dev/sda1. Priority:-1 extents:1 across:3911788k [ 12.493226] EXT3 FS on sda3, internal journal [ 12.739210] kjournald starting. Commit interval 5 seconds [ 12.739353] EXT3 FS on sda5, internal journal [ 12.739358] EXT3-fs: mounted filesystem with ordered data mode. [ 13.177759] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.232048] e1000e 0000:0f:00.0: irq 54 for MSI/MSI-X [ 13.234176] ADDRCONF(NETDEV_UP): eth0: link is not ready [ 16.264038] e1000e: eth0 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX/TX [ 16.313675] ADDRCONF(NETDEV_CHANGE): eth0: link becomes ready [ 26.404006] eth0: no IPv6 routers present [ 419.204404] RPC: Registered udp transport module. [ 419.232695] RPC: Registered tcp transport module. [ 419.260945] RPC: Registered tcp NFSv4.1 backchannel transport module. [ 419.331925] Slow work thread pool: Starting up [ 419.358667] Slow work thread pool: Ready [ 419.382250] FS-Cache: Loaded [ 419.425520] FS-Cache: Netfs 'nfs' registered for caching [ 419.463511] svc: failed to register lockdv1 RPC service (errno 97). [ 449.116809] Adding 296929352k swap on /dev/sda5. Priority:-2 extents:1 across:296929352k [ 465.489186] ip_tables: (C) 2000-2006 Netfilter Core Team [ 850.120202] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=27868 DF PROTO=TCP SPT=59348 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 853.209514] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=27869 DF PROTO=TCP SPT=59348 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 853.505127] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=23776 DF PROTO=TCP SPT=59913 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 930.832097] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=18953 DF PROTO=TCP SPT=45353 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 933.921023] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=18954 DF PROTO=TCP SPT=45353 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 934.220957] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=56991 DF PROTO=TCP SPT=59468 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2301.492919] Maximum lock depth 1024 reached task: ld-linux-x86-64 (29148) [ 2620.019712] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=57535 DF PROTO=TCP SPT=35817 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2623.112017] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=57536 DF PROTO=TCP SPT=35817 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2623.215999] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=51707 DF PROTO=TCP SPT=51170 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2698.222167] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=48814 DF PROTO=TCP SPT=35951 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2701.308760] IN= OUT=eth0 SRC=172.16.66.112 DST=82.94.164.162 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=48815 DF PROTO=TCP SPT=35951 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 2701.412034] IN= OUT=eth0 SRC=172.16.66.112 DST=173.203.107.207 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=8013 DF PROTO=TCP SPT=51291 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 3238.366932] ld-linux-x86-64[1291] trap invalid opcode ip:2b04bab5ccf9 sp:7fff12c5e188 error:0 in ld.so[2b04bab49000+1f000] [ 4362.829194] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=26849 DF PROTO=TCP SPT=54706 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4404.551957] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=65277 DF PROTO=TCP SPT=54707 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4439.091584] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=10382 DF PROTO=TCP SPT=54708 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 4471.484928] IN= OUT=eth0 SRC=172.16.66.112 DST=77.78.110.71 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=16410 DF PROTO=TCP SPT=54725 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************