DC-Build-Header: disulfinder 1.2.11-2 / Fri Jan 13 01:27:10 +0100 2012 Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on stremi-12.reims.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ disulfinder 1.2.11-2 (amd64) 13 Jan 2012 01:30 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: disulfinder Version: 1.2.11-2 Source Version: 1.2.11-2 Distribution: lsid64b Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Get:1 http://localhost sid Release.gpg [836 B] Get:2 http://localhost sid Release [188 kB] Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Get:3 http://localhost sid/main Sources [7544 kB] Get:4 http://localhost sid/main amd64 Packages [10.4 MB] Ign http://localhost sid/main Translation-en Fetched 18.2 MB in 5s (3144 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: clang cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'disulfinder' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/disulfinder/trunk/ Need to get 2486 kB of source archives. Get:1 http://localhost/debian/ sid/main disulfinder 1.2.11-2 (dsc) [1456 B] Get:2 http://localhost/debian/ sid/main disulfinder 1.2.11-2 (tar) [2481 kB] Get:3 http://localhost/debian/ sid/main disulfinder 1.2.11-2 (diff) [3527 B] Fetched 2486 kB in 0s (18.9 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/disulfinder-3l5iFf/resolver-0m0wzK/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10821 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64b-c4431647-cc87-4510-bb76-e7ccca5e3b86/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libboost-dev, libboost-graph-dev, libf2c2-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libboost-dev, libboost-graph-dev, libf2c2-dev dpkg-deb: building package `sbuild-build-depends-disulfinder-dummy' in `/build/disulfinder-3l5iFf/resolver-R7ujhq/apt_archive/sbuild-build-depends-disulfinder-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install disulfinder build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libboost-dev libboost-graph-dev libboost-graph1.46-dev libboost-serialization1.46-dev libboost-serialization1.46.1 libboost-test1.46-dev libboost-test1.46.1 libboost1.46-dev libcroco3 libf2c2 libf2c2-dev libglib2.0-0 libicu48 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libboost1.46-doc libboost-date-time1.46-dev libboost-filesystem1.46-dev libboost-graph-parallel1.46-dev libboost-iostreams1.46-dev libboost-math1.46-dev libboost-mpi1.46-dev libboost-program-options1.46-dev libboost-python1.46-dev libboost-random1.46-dev libboost-regex1.46-dev libboost-signals1.46-dev libboost-system1.46-dev libboost-thread1.46-dev libboost-wave1.46-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libboost-graph1.46.1 libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libboost-dev libboost-graph-dev libboost-graph1.46-dev libboost-serialization1.46-dev libboost-serialization1.46.1 libboost-test1.46-dev libboost-test1.46.1 libboost1.46-dev libcroco3 libf2c2 libf2c2-dev libglib2.0-0 libicu48 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-disulfinder-dummy 0 upgraded, 29 newly installed, 0 to remove and 10 not upgraded. Need to get 27.7 MB/27.7 MB of archives. After this operation, 117 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 libglib2.0-0 libxml2 libcroco3 libunistring0 bsdmainutils groff-base man-db libmagic1 file gettext-base html2text gettext intltool-debian po-debconf debhelper libicu48 libboost1.46-dev libboost-dev libboost-serialization1.46.1 libboost-serialization1.46-dev libboost-test1.46.1 libboost-test1.46-dev libboost-graph1.46-dev libboost-graph-dev libf2c2 libf2c2-dev sbuild-build-depends-disulfinder-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-5 [38.2 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.30.2-4 [1844 kB] Get:4 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-5.1 [891 kB] Get:5 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-2 [122 kB] Get:6 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-5 [434 kB] Get:7 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:8 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:9 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-3 [1015 kB] Get:10 http://localhost/debian/ sid/main libmagic1 amd64 5.09-2 [246 kB] Get:11 http://localhost/debian/ sid/main file amd64 5.09-2 [52.0 kB] Get:12 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-5 [154 kB] Get:13 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-5 [2080 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu2 [224 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.14 [693 kB] Get:18 http://localhost/debian/ sid/main libicu48 amd64 4.8.1.1-2 [8124 kB] Get:19 http://localhost/debian/ sid/main libboost1.46-dev amd64 1.46.1-8 [7829 kB] Get:20 http://localhost/debian/ sid/main libboost-dev amd64 1.48.0.2 [2774 B] Get:21 http://localhost/debian/ sid/main libboost-serialization1.46.1 amd64 1.46.1-8 [208 kB] Get:22 http://localhost/debian/ sid/main libboost-serialization1.46-dev amd64 1.46.1-8 [304 kB] Get:23 http://localhost/debian/ sid/main libboost-test1.46.1 amd64 1.46.1-8 [259 kB] Get:24 http://localhost/debian/ sid/main libboost-test1.46-dev amd64 1.46.1-8 [645 kB] Get:25 http://localhost/debian/ sid/main libboost-graph1.46-dev amd64 1.46.1-8 [165 kB] Get:26 http://localhost/debian/ sid/main libboost-graph-dev amd64 1.48.0.2 [2756 B] Get:27 http://localhost/debian/ sid/main libf2c2 amd64 20090411-2 [159 kB] Get:28 http://localhost/debian/ sid/main libf2c2-dev amd64 20090411-2 [478 kB] Preconfiguring packages ... Fetched 27.7 MB in 0s (35.4 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 10821 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.14_all.deb) ... Selecting previously unselected package libicu48. Unpacking libicu48 (from .../libicu48_4.8.1.1-2_amd64.deb) ... Selecting previously unselected package libboost1.46-dev. Unpacking libboost1.46-dev (from .../libboost1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-dev. Unpacking libboost-dev (from .../libboost-dev_1.48.0.2_amd64.deb) ... Selecting previously unselected package libboost-serialization1.46.1. Unpacking libboost-serialization1.46.1 (from .../libboost-serialization1.46.1_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-serialization1.46-dev. Unpacking libboost-serialization1.46-dev (from .../libboost-serialization1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-test1.46.1. Unpacking libboost-test1.46.1 (from .../libboost-test1.46.1_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-test1.46-dev. Unpacking libboost-test1.46-dev (from .../libboost-test1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-graph1.46-dev. Unpacking libboost-graph1.46-dev (from .../libboost-graph1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-graph-dev. Unpacking libboost-graph-dev (from .../libboost-graph-dev_1.48.0.2_amd64.deb) ... Selecting previously unselected package libf2c2. Unpacking libf2c2 (from .../libf2c2_20090411-2_amd64.deb) ... Selecting previously unselected package libf2c2-dev. Unpacking libf2c2-dev (from .../libf2c2-dev_20090411-2_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-disulfinder-dummy. Unpacking sbuild-build-depends-disulfinder-dummy (from .../sbuild-build-depends-disulfinder-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-5) ... Setting up libpcre3 (8.12-4) ... Setting up libglib2.0-0 (2.30.2-4) ... No schema files found: doing nothing. Setting up libxml2 (2.7.8.dfsg-5.1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up gettext-base (0.18.1.1-5) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (8.9.14) ... Setting up libicu48 (4.8.1.1-2) ... Setting up libboost1.46-dev (1.46.1-8) ... Setting up libboost-dev (1.48.0.2) ... Setting up libboost-serialization1.46.1 (1.46.1-8) ... Setting up libboost-serialization1.46-dev (1.46.1-8) ... Setting up libboost-test1.46.1 (1.46.1-8) ... Setting up libboost-test1.46-dev (1.46.1-8) ... Setting up libboost-graph1.46-dev (1.46.1-8) ... Setting up libboost-graph-dev (1.48.0.2) ... Setting up libf2c2 (20090411-2) ... Setting up libf2c2-dev (20090411-2) ... Setting up sbuild-build-depends-disulfinder-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.8-2 Package versions: apt_0.8.15.9 apt-utils_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-4 bsdmainutils_8.2.3 bsdutils_1:2.20.1-1.1 build-essential_11.5 bzip2_1.0.6-1 clang_3.0-5 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.14 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-9 gcc_4:4.6.2-4 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.09 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.1 libboost-dev_1.48.0.2 libboost-graph-dev_1.48.0.2 libboost-graph1.46-dev_1.46.1-8 libboost-serialization1.46-dev_1.46.1-8 libboost-serialization1.46.1_1.46.1-8 libboost-test1.46-dev_1.46.1-8 libboost-test1.46.1_1.46.1-8 libboost1.46-dev_1.46.1-8 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclang-common-dev_3.0-5 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libf2c2_20090411-2 libf2c2-dev_20090411-2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-9 libicu48_4.8.1.1-2 libllvm3.0_3.0-5 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.20.1-1.1 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libquadmath0_4.6.2-9 libreadline6_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.1 libxml2_2.7.8.dfsg-5.1 linux-libc-dev_3.1.8-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.20.1-1.1 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-disulfinder-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Sep 1 14:45:13 2011 CEST using DSA key ID BE9D5339 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./disulfinder_1.2.11-2.dsc dpkg-source: info: extracting disulfinder in disulfinder-1.2.11 dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: source package disulfinder dpkg-buildpackage: source version 1.2.11-2 dpkg-source --before-build disulfinder-1.2.11 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j1 distclean make[1]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src' make -C NN clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/NN' make -C Common clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Common' make -C eig clean make[4]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[4]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Common' make -C SVM clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/SVM' cd SVM && make clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Input' cd Output && make clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11' dh_clean rm -f debian/disulfinder.substvars rm -f debian/disulfinder.*.debhelper rm -rf debian/disulfinder/ rm -f debian/disulfinder-data.substvars rm -f debian/disulfinder-data.*.debhelper rm -rf debian/disulfinder-data/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp dpkg-source -b disulfinder-1.2.11 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building disulfinder using existing ./disulfinder_1.2.11.orig.tar.gz dpkg-source: info: building disulfinder in disulfinder_1.2.11-2.debian.tar.gz dpkg-source: info: building disulfinder in disulfinder_1.2.11-2.dsc debian/rules build dh_testdir /usr/bin/make prefix=/usr make[1]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11' /usr/bin/make -C disulfind/src disulfinder make[2]: Entering directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src' g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/GlobalDescriptor.cpp:3: In file included from Input/utils.h:2: Input/Protein.h:16:20: warning: unused variable 'aa_codes' [-Wunused-variable] static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files ^ Input/Protein.h:17:20: warning: unused variable 'tdb_aa_codes' [-Wunused-variable] static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files ^ Input/Protein.h:19:20: warning: unused variable 'aa_three_codes' [-Wunused-variable] static const char *aa_three_codes[23] = { ^ 3 warnings generated. g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/createBRNNDataset.cpp:2: In file included from Input/createBRNNDataset.h:1: In file included from Input/utils.h:2: Input/Protein.h:16:20: warning: unused variable 'aa_codes' [-Wunused-variable] static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files ^ Input/Protein.h:17:20: warning: unused variable 'tdb_aa_codes' [-Wunused-variable] static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files ^ Input/Protein.h:19:20: warning: unused variable 'aa_three_codes' [-Wunused-variable] static const char *aa_three_codes[23] = { ^ 3 warnings generated. g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/createKernelDataset.cpp:2: In file included from Input/createKernelDataset.h:1: In file included from Input/utils.h:2: Input/Protein.h:17:20: warning: unused variable 'tdb_aa_codes' [-Wunused-variable] static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files ^ Input/Protein.h:19:20: warning: unused variable 'aa_three_codes' [-Wunused-variable] static const char *aa_three_codes[23] = { ^ 2 warnings generated. g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o Input/buildXfolds.cpp:16:41: error: variable length array of non-POD element type 'std::vector' std::vector fold_examples[folds_number]; ^ 1 error generated. make[2]: *** [Input/buildXfolds.o] Error 1 make[2]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11/disulfind/src' make[1]: *** [disulfinder] Error 2 make[1]: Leaving directory `/build/disulfinder-3l5iFf/disulfinder-1.2.11' make: *** [build-stamp] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120113-0131 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64b-c4431647-cc87-4510-bb76-e7ccca5e3b86/build/disulfinder-3l5iFf Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 15724 Build-Time: 8 Distribution: lsid64b Fail-Stage: build Install-Time: 9 Job: disulfinder_1.2.11-2 Package: disulfinder Package-Time: 32 Source-Version: 1.2.11-2 Space: 15724 Status: attempted Version: 1.2.11-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120113-0131 Build needed 00:00:32, 15724k disc space DC-Message: Failed, but took only 243.662902. Retrying, you never know. Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Another build requested exclusive access to the build node Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. Requested exclusive mode, but other builds running. sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on stremi-12.reims.grid5000.fr ╔══════════════════════════════════════════════════════════════════════════════╗ ║ disulfinder 1.2.11-2 (amd64) 13 Jan 2012 01:35 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: disulfinder Version: 1.2.11-2 Source Version: 1.2.11-2 Distribution: lsid64b Architecture: amd64 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost sid InRelease Get:1 http://localhost sid Release.gpg [836 B] Get:2 http://localhost sid Release [188 kB] Ign http://localhost sid/main Sources/DiffIndex Ign http://localhost sid/main amd64 Packages/DiffIndex Ign http://localhost sid/main TranslationIndex Get:3 http://localhost sid/main Sources [7544 kB] Get:4 http://localhost sid/main amd64 Packages [10.4 MB] Ign http://localhost sid/main Translation-en Fetched 18.2 MB in 6s (2871 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: clang cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0 libstdc++6 libstdc++6-4.6-dev 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'disulfinder' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/disulfinder/trunk/ Need to get 2486 kB of source archives. Get:1 http://localhost/debian/ sid/main disulfinder 1.2.11-2 (dsc) [1456 B] Get:2 http://localhost/debian/ sid/main disulfinder 1.2.11-2 (tar) [2481 kB] Get:3 http://localhost/debian/ sid/main disulfinder 1.2.11-2 (diff) [3527 B] Fetched 2486 kB in 0s (37.4 MB/s) Download complete and in download only mode Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/build/disulfinder-6T6yWF/resolver-FjfZQx/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 0 B/702 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10821 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Cannot open /var/lib/schroot/mount/lsid64b-325d85b0-7dbf-431d-af4f-43a2dd6379e1/etc/lsb-release: No such file or directory Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libboost-dev, libboost-graph-dev, libf2c2-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libboost-dev, libboost-graph-dev, libf2c2-dev dpkg-deb: building package `sbuild-build-depends-disulfinder-dummy' in `/build/disulfinder-6T6yWF/resolver-vK5h58/apt_archive/sbuild-build-depends-disulfinder-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install disulfinder build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libboost-dev libboost-graph-dev libboost-graph1.46-dev libboost-serialization1.46-dev libboost-serialization1.46.1 libboost-test1.46-dev libboost-test1.46.1 libboost1.46-dev libcroco3 libf2c2 libf2c2-dev libglib2.0-0 libicu48 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libboost1.46-doc libboost-date-time1.46-dev libboost-filesystem1.46-dev libboost-graph-parallel1.46-dev libboost-iostreams1.46-dev libboost-math1.46-dev libboost-mpi1.46-dev libboost-program-options1.46-dev libboost-python1.46-dev libboost-random1.46-dev libboost-regex1.46-dev libboost-signals1.46-dev libboost-system1.46-dev libboost-thread1.46-dev libboost-wave1.46-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libboost-graph1.46.1 libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libboost-dev libboost-graph-dev libboost-graph1.46-dev libboost-serialization1.46-dev libboost-serialization1.46.1 libboost-test1.46-dev libboost-test1.46.1 libboost1.46-dev libcroco3 libf2c2 libf2c2-dev libglib2.0-0 libicu48 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-disulfinder-dummy 0 upgraded, 29 newly installed, 0 to remove and 10 not upgraded. Need to get 27.7 MB/27.7 MB of archives. After this operation, 117 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libpcre3 libglib2.0-0 libxml2 libcroco3 libunistring0 bsdmainutils groff-base man-db libmagic1 file gettext-base html2text gettext intltool-debian po-debconf debhelper libicu48 libboost1.46-dev libboost-dev libboost-serialization1.46.1 libboost-serialization1.46-dev libboost-test1.46.1 libboost-test1.46-dev libboost-graph1.46-dev libboost-graph-dev libf2c2 libf2c2-dev sbuild-build-depends-disulfinder-dummy Authentication warning overridden. Get:1 http://localhost/debian/ sid/main libpipeline1 amd64 1.2.0-5 [38.2 kB] Get:2 http://localhost/debian/ sid/main libpcre3 amd64 8.12-4 [225 kB] Get:3 http://localhost/debian/ sid/main libglib2.0-0 amd64 2.30.2-4 [1844 kB] Get:4 http://localhost/debian/ sid/main libxml2 amd64 2.7.8.dfsg-5.1 [891 kB] Get:5 http://localhost/debian/ sid/main libcroco3 amd64 0.6.2-2 [122 kB] Get:6 http://localhost/debian/ sid/main libunistring0 amd64 0.9.3-5 [434 kB] Get:7 http://localhost/debian/ sid/main bsdmainutils amd64 8.2.3 [208 kB] Get:8 http://localhost/debian/ sid/main groff-base amd64 1.21-6 [1150 kB] Get:9 http://localhost/debian/ sid/main man-db amd64 2.6.0.2-3 [1015 kB] Get:10 http://localhost/debian/ sid/main libmagic1 amd64 5.09-2 [246 kB] Get:11 http://localhost/debian/ sid/main file amd64 5.09-2 [52.0 kB] Get:12 http://localhost/debian/ sid/main gettext-base amd64 0.18.1.1-5 [154 kB] Get:13 http://localhost/debian/ sid/main html2text amd64 1.3.2a-15 [103 kB] Get:14 http://localhost/debian/ sid/main gettext amd64 0.18.1.1-5 [2080 kB] Get:15 http://localhost/debian/ sid/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:16 http://localhost/debian/ sid/main po-debconf all 1.0.16+nmu2 [224 kB] Get:17 http://localhost/debian/ sid/main debhelper all 8.9.14 [693 kB] Get:18 http://localhost/debian/ sid/main libicu48 amd64 4.8.1.1-2 [8124 kB] Get:19 http://localhost/debian/ sid/main libboost1.46-dev amd64 1.46.1-8 [7829 kB] Get:20 http://localhost/debian/ sid/main libboost-dev amd64 1.48.0.2 [2774 B] Get:21 http://localhost/debian/ sid/main libboost-serialization1.46.1 amd64 1.46.1-8 [208 kB] Get:22 http://localhost/debian/ sid/main libboost-serialization1.46-dev amd64 1.46.1-8 [304 kB] Get:23 http://localhost/debian/ sid/main libboost-test1.46.1 amd64 1.46.1-8 [259 kB] Get:24 http://localhost/debian/ sid/main libboost-test1.46-dev amd64 1.46.1-8 [645 kB] Get:25 http://localhost/debian/ sid/main libboost-graph1.46-dev amd64 1.46.1-8 [165 kB] Get:26 http://localhost/debian/ sid/main libboost-graph-dev amd64 1.48.0.2 [2756 B] Get:27 http://localhost/debian/ sid/main libf2c2 amd64 20090411-2 [159 kB] Get:28 http://localhost/debian/ sid/main libf2c2-dev amd64 20090411-2 [478 kB] Preconfiguring packages ... Fetched 27.7 MB in 0s (43.2 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 10821 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.14_all.deb) ... Selecting previously unselected package libicu48. Unpacking libicu48 (from .../libicu48_4.8.1.1-2_amd64.deb) ... Selecting previously unselected package libboost1.46-dev. Unpacking libboost1.46-dev (from .../libboost1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-dev. Unpacking libboost-dev (from .../libboost-dev_1.48.0.2_amd64.deb) ... Selecting previously unselected package libboost-serialization1.46.1. Unpacking libboost-serialization1.46.1 (from .../libboost-serialization1.46.1_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-serialization1.46-dev. Unpacking libboost-serialization1.46-dev (from .../libboost-serialization1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-test1.46.1. Unpacking libboost-test1.46.1 (from .../libboost-test1.46.1_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-test1.46-dev. Unpacking libboost-test1.46-dev (from .../libboost-test1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-graph1.46-dev. Unpacking libboost-graph1.46-dev (from .../libboost-graph1.46-dev_1.46.1-8_amd64.deb) ... Selecting previously unselected package libboost-graph-dev. Unpacking libboost-graph-dev (from .../libboost-graph-dev_1.48.0.2_amd64.deb) ... Selecting previously unselected package libf2c2. Unpacking libf2c2 (from .../libf2c2_20090411-2_amd64.deb) ... Selecting previously unselected package libf2c2-dev. Unpacking libf2c2-dev (from .../libf2c2-dev_20090411-2_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-disulfinder-dummy. Unpacking sbuild-build-depends-disulfinder-dummy (from .../sbuild-build-depends-disulfinder-dummy.deb) ... Processing triggers for install-info ... Setting up libpipeline1 (1.2.0-5) ... Setting up libpcre3 (8.12-4) ... Setting up libglib2.0-0 (2.30.2-4) ... No schema files found: doing nothing. Setting up libxml2 (2.7.8.dfsg-5.1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up gettext-base (0.18.1.1-5) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (8.9.14) ... Setting up libicu48 (4.8.1.1-2) ... Setting up libboost1.46-dev (1.46.1-8) ... Setting up libboost-dev (1.48.0.2) ... Setting up libboost-serialization1.46.1 (1.46.1-8) ... Setting up libboost-serialization1.46-dev (1.46.1-8) ... Setting up libboost-test1.46.1 (1.46.1-8) ... Setting up libboost-test1.46-dev (1.46.1-8) ... Setting up libboost-graph1.46-dev (1.46.1-8) ... Setting up libboost-graph-dev (1.48.0.2) ... Setting up libf2c2 (20090411-2) ... Setting up libf2c2-dev (20090411-2) ... Setting up sbuild-build-depends-disulfinder-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-4 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.8-2 Package versions: apt_0.8.15.9 apt-utils_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-4 bsdmainutils_8.2.3 bsdutils_1:2.20.1-1.1 build-essential_11.5 bzip2_1.0.6-1 clang_3.0-5 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.14 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-9 gcc_4:4.6.2-4 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.09 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-8 intltool-debian_0.35.0+20060710.1 less_444-1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.1 libboost-dev_1.48.0.2 libboost-graph-dev_1.48.0.2 libboost-graph1.46-dev_1.46.1-8 libboost-serialization1.46-dev_1.46.1-8 libboost-serialization1.46.1_1.46.1-8 libboost-test1.46-dev_1.46.1-8 libboost-test1.46.1_1.46.1-8 libboost1.46-dev_1.46.1-8 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclang-common-dev_3.0-5 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libf2c2_20090411-2 libf2c2-dev_20090411-2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-9 libicu48_4.8.1.1-2 libllvm3.0_3.0-5 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.20.1-1.1 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libquadmath0_4.6.2-9 libreadline6_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.1 libxml2_2.7.8.dfsg-5.1 linux-libc-dev_3.1.8-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.20.1-1.1 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 nvi_1.81.6-8.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-disulfinder-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.1 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Sep 1 14:45:13 2011 CEST using DSA key ID BE9D5339 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./disulfinder_1.2.11-2.dsc dpkg-source: info: extracting disulfinder in disulfinder-1.2.11 dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build dpkg-buildpackage ───────────────── dpkg-buildpackage: source package disulfinder dpkg-buildpackage: source version 1.2.11-2 dpkg-source --before-build disulfinder-1.2.11 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j1 distclean make[1]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src' make -C NN clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/NN' make -C Common clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Common' make -C eig clean make[4]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[4]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Common' make -C SVM clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/SVM' cd SVM && make clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Input' cd Output && make clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11' dh_clean rm -f debian/disulfinder.substvars rm -f debian/disulfinder.*.debhelper rm -rf debian/disulfinder/ rm -f debian/disulfinder-data.substvars rm -f debian/disulfinder-data.*.debhelper rm -rf debian/disulfinder-data/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp dpkg-source -b disulfinder-1.2.11 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building disulfinder using existing ./disulfinder_1.2.11.orig.tar.gz dpkg-source: info: building disulfinder in disulfinder_1.2.11-2.debian.tar.gz dpkg-source: info: building disulfinder in disulfinder_1.2.11-2.dsc debian/rules build dh_testdir /usr/bin/make prefix=/usr make[1]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11' /usr/bin/make -C disulfind/src disulfinder make[2]: Entering directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src' g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/GlobalDescriptor.cpp:3: In file included from Input/utils.h:2: Input/Protein.h:16:20: warning: unused variable 'aa_codes' [-Wunused-variable] static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files ^ Input/Protein.h:17:20: warning: unused variable 'tdb_aa_codes' [-Wunused-variable] static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files ^ Input/Protein.h:19:20: warning: unused variable 'aa_three_codes' [-Wunused-variable] static const char *aa_three_codes[23] = { ^ 3 warnings generated. g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/createBRNNDataset.cpp:2: In file included from Input/createBRNNDataset.h:1: In file included from Input/utils.h:2: Input/Protein.h:16:20: warning: unused variable 'aa_codes' [-Wunused-variable] static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files ^ Input/Protein.h:17:20: warning: unused variable 'tdb_aa_codes' [-Wunused-variable] static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files ^ Input/Protein.h:19:20: warning: unused variable 'aa_three_codes' [-Wunused-variable] static const char *aa_three_codes[23] = { ^ 3 warnings generated. g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/createKernelDataset.cpp:2: In file included from Input/createKernelDataset.h:1: In file included from Input/utils.h:2: Input/Protein.h:17:20: warning: unused variable 'tdb_aa_codes' [-Wunused-variable] static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files ^ Input/Protein.h:19:20: warning: unused variable 'aa_three_codes' [-Wunused-variable] static const char *aa_three_codes[23] = { ^ 2 warnings generated. g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o g++ -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o Input/buildXfolds.cpp:16:41: error: variable length array of non-POD element type 'std::vector' std::vector fold_examples[folds_number]; ^ 1 error generated. make[2]: *** [Input/buildXfolds.o] Error 1 make[2]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11/disulfind/src' make[1]: *** [disulfinder] Error 2 make[1]: Leaving directory `/build/disulfinder-6T6yWF/disulfinder-1.2.11' make: *** [build-stamp] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120113-0135 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /var/lib/schroot/mount/lsid64b-325d85b0-7dbf-431d-af4f-43a2dd6379e1/build/disulfinder-6T6yWF Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 15724 Build-Time: 8 Distribution: lsid64b Fail-Stage: build Install-Time: 8 Job: disulfinder_1.2.11-2 Package: disulfinder Package-Time: 31 Source-Version: 1.2.11-2 Space: 15724 Status: attempted Version: 1.2.11-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120113-0135 Build needed 00:00:31, 15724k disc space DC-Build-Status: Failed 517.154088s ### Content of /var/log/daemon.log ### Jan 12 21:03:13 stremi-12 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:03:30 stremi-12 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Jan 12 21:04:04 stremi-12 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:15 stremi-12 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:28 stremi-12 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:39 stremi-12 approx: Concurrent download of debian/dists/sid/Release.gpg is taking too long Jan 12 21:04:59 stremi-12 approx: Concurrent download of debian/dists/sid/Release is taking too long Jan 12 21:05:20 stremi-12 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Jan 12 21:05:20 stremi-12 approx: Concurrent download of debian/dists/sid/Release is taking too long Jan 12 21:05:31 stremi-12 approx: Concurrent download of debian/dists/sid/Release is taking too long Jan 12 21:05:56 stremi-12 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Jan 12 21:06:01 stremi-12 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long Jan 12 21:06:11 stremi-12 approx: Concurrent download of debian/dists/sid/main/i18n/Index is taking too long Jan 12 21:06:26 stremi-12 approx: Concurrent download of debian/dists/sid/main/binary-amd64/Packages.xz is taking too long ### End of content of /var/log/daemon.log ### DC-Time-Estimation: 517.154088 versus expected 62 (r/m: 7.34119496774194 ; m: 62.0) DC-Build-Network: USED. See /tmp/rulesafter.jjLU41 ! ************************************************************ # Generated by iptables-save v1.4.8 on Fri Jan 13 01:35:48 2012 *filter :INPUT ACCEPT [4300544:33004755828] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] [2287797:28505468753] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.159.0/24 -j ACCEPT [0:0] -A OUTPUT -d 192.168.160.0/24 -j ACCEPT [0:0] -A OUTPUT -d 10.69.0.0/17 -j ACCEPT [0:0] -A OUTPUT -d 172.28.52.0/22 -j ACCEPT [0:0] -A OUTPUT -d 172.24.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT [425120:126629207] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 192.168.67.0/24 -j ACCEPT [33120:4411788] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [32:1920] -A OUTPUT -j LD [32:1920] -A LD -j LOG [32:1920] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT # Completed on Fri Jan 13 01:35:48 2012 ************************************************************ --- /tmp/rulesbefore.w6FYPv 2012-01-13 01:27:10.838802474 +0100 +++ /tmp/rulesafter.jjLU41 2012-01-13 01:35:48.002308880 +0100 @@ -1,10 +1,10 @@ -# Generated by iptables-save v1.4.8 on Fri Jan 13 01:27:10 2012 +# Generated by iptables-save v1.4.8 on Fri Jan 13 01:35:48 2012 *filter -:INPUT ACCEPT [4145552:31593695985] +:INPUT ACCEPT [4300544:33004755828] :FORWARD ACCEPT [0:0] :OUTPUT DROP [0:0] :LD - [0:0] -[2185185:27155623973] -A OUTPUT -o lo -j ACCEPT +[2287797:28505468753] -A OUTPUT -o lo -j ACCEPT [0:0] -A OUTPUT -d 129.88.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 10.0.0.0/8 -j ACCEPT [0:0] -A OUTPUT -d 192.168.133.0/24 -j ACCEPT @@ -16,11 +16,11 @@ [0:0] -A OUTPUT -d 131.254.202.0/23 -j ACCEPT [0:0] -A OUTPUT -d 138.96.20.0/22 -j ACCEPT [0:0] -A OUTPUT -d 192.168.22.0/24 -j ACCEPT -[416367:121843772] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT +[425120:126629207] -A OUTPUT -d 172.16.0.0/16 -j ACCEPT [0:0] -A OUTPUT -d 192.168.67.0/24 -j ACCEPT -[32187:4290820] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT +[33120:4411788] -A OUTPUT -d 224.0.0.0/4 -p udp -j ACCEPT [32:1920] -A OUTPUT -j LD [32:1920] -A LD -j LOG [32:1920] -A LD -j REJECT --reject-with icmp-port-unreachable COMMIT -# Completed on Fri Jan 13 01:27:10 2012 +# Completed on Fri Jan 13 01:35:48 2012 ************************************************************ [ 5256.238813] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=16073 DF PROTO=TCP SPT=37006 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7333.610366] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=7077 DF PROTO=TCP SPT=44391 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7333.627099] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14554 DF PROTO=TCP SPT=44392 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7336.624047] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=7078 DF PROTO=TCP SPT=44391 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 7336.640777] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14555 DF PROTO=TCP SPT=44392 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 8673.345585] graphmolMolOpsT[21877]: segfault at 0 ip 00002b1f92bf8701 sp 00007fff5be2f2b8 error 4 in libc-2.13.so[2b1f92b7c000+17a000] [ 9761.942225] IN= OUT=eth0 SRC=172.16.160.12 DST=188.40.172.6 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=40198 DF PROTO=TCP SPT=51236 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9794.843113] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=14338 DF PROTO=TCP SPT=34086 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9816.757136] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=46120 DF PROTO=TCP SPT=47217 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9826.527705] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=28961 DF PROTO=TCP SPT=40747 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9841.411563] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=39204 DF PROTO=TCP SPT=57882 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9946.357933] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=33800 DF PROTO=TCP SPT=45593 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9949.376106] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=33801 DF PROTO=TCP SPT=45593 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9953.833385] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=6018 DF PROTO=TCP SPT=45613 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9956.715250] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=58243 DF PROTO=TCP SPT=45614 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9956.848697] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=6019 DF PROTO=TCP SPT=45613 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9959.732539] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=58244 DF PROTO=TCP SPT=45614 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9960.925762] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=48701 DF PROTO=TCP SPT=45615 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9963.945112] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=48702 DF PROTO=TCP SPT=45615 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9964.159867] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=49419 DF PROTO=TCP SPT=45616 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9967.176045] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=49420 DF PROTO=TCP SPT=45616 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9971.240822] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=55158 DF PROTO=TCP SPT=45617 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [ 9974.256115] IN= OUT=eth0 SRC=172.16.160.12 DST=66.151.234.53 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=55159 DF PROTO=TCP SPT=45617 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11415.921938] clang[20816]: segfault at 0 ip 0000000000d6c516 sp 00007fff56c1a5b0 error 4 [11415.927727] clang[20825]: segfault at 0 ip 0000000000d6c516 sp 00007fffe8afe180 error 4 in clang[400000+b83000] [11415.942353] in clang[400000+b83000] [11415.944309] clang[20830]: segfault at 0 ip 0000000000d6c516 sp 00007fff6417edd0 error 4 in clang[400000+b83000] [11415.946354] clang[20836]: segfault at 0 ip 0000000000d6c516 sp 00007fff4e83c710 error 4 in clang[400000+b83000] [11415.947902] clang[20841]: segfault at 0 ip 0000000000d6c516 sp 00007ffff187d330 error 4 in clang[400000+b83000] [11415.952624] clang[20846]: segfault at 0 ip 0000000000d6c516 sp 00007fffba98f3f0 error 4 in clang[400000+b83000] [11415.953927] clang[20843]: segfault at 0 ip 0000000000d6c516 sp 00007fff5c63e530 error 4 in clang[400000+b83000] [11416.003164] [11416.293164] clang[20801]: segfault at 0 ip 0000000000d6c516 sp 00007fff3e7427f0 error 4 in clang[400000+b83000] [11583.778268] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=25529 DF PROTO=TCP SPT=49668 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11586.796029] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=25530 DF PROTO=TCP SPT=49668 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11586.817587] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=52355 DF PROTO=TCP SPT=49669 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11589.836030] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=52356 DF PROTO=TCP SPT=49669 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11589.874266] IN= OUT=eth0 SRC=172.16.160.12 DST=8.17.172.50 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=735 DF PROTO=TCP SPT=38590 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [11592.888035] IN= OUT=eth0 SRC=172.16.160.12 DST=8.17.172.50 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=736 DF PROTO=TCP SPT=38590 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [12685.074048] clang[31282]: segfault at 0 ip 0000000000d6c516 sp 00007fff66f05910 error 4 in clang[400000+b83000] [12685.084434] clang[31286]: segfault at 0 ip 0000000000d6c516 sp 00007fffb1fd0b50 error 4 in clang[400000+b83000] [12685.088092] clang[31290]: segfault at 0 ip 0000000000d6c516 sp 00007ffff8b13fc0 error 4 in clang[400000+b83000] [12685.095639] clang[31300]: segfault at 0 ip 0000000000d6c516 sp 00007fffcd2b3830 error 4 in clang[400000+b83000] [12685.106855] clang[31299]: segfault at 0 ip 0000000000d6c516 sp 00007fffddc0d1b0 error 4 in clang[400000+b83000] [12685.107724] clang[31293]: segfault at 0 ip 0000000000d6c516 sp 00007fff6696c060 error 4 in clang[400000+b83000] [12685.119725] clang[31298]: segfault at 0 ip 0000000000d6c516 sp 00007fffd0a7f600 error 4 in clang[400000+b83000] [12685.153594] [12685.465230] clang[31270]: segfault at 0 ip 0000000000d6c516 sp 00007fff3d3c8070 error 4 in clang[400000+b83000] [15594.873423] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=18994 DF PROTO=TCP SPT=52852 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 [15597.892024] IN= OUT=eth0 SRC=172.16.160.12 DST=192.9.162.55 LEN=60 TOS=0x00 PREC=0x00 TTL=64 ID=18995 DF PROTO=TCP SPT=52852 DPT=80 WINDOW=5840 RES=0x00 SYN URGP=0 ************************************************************