DC-Build-Header: biococoa 2.2.2-1 / Sat Jun 23 16:40:02 +0000 2012 DC-Task: logfile:/tmp/biococoa_2.2.2-1_unstable_clang.log version:2.2.2-1 chroot:unstable modes:binary-only:clang source:biococoa architecture:any esttime:55 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang biococoa_2.2.2-1' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-133-185.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ biococoa 2.2.2-1 (amd64) 23 Jun 2012 16:40 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: biococoa Version: 2.2.2-1 Source Version: 2.2.2-1 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/biococoa-9oVMA9/biococoa-2.2.2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/biococoa-9oVMA9' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-06a8a67e-f5fe-49f8-ba7a-1574caa9daa0' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:7 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:8 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:9 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:10 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:11 http://localhost unstable/main 2012-06-23-1414.42.pdiff [10.6 kB] Get:12 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:13 http://localhost unstable/main amd64 2012-06-23-1414.42.pdiff [11.3 kB] Get:14 http://localhost unstable/main 2012-06-23-1414.42.pdiff [10.6 kB] Get:15 http://localhost unstable/main 2012-06-23-1414.42.pdiff [696 B] Get:16 http://localhost unstable/main amd64 2012-06-23-1414.42.pdiff [11.3 kB] Get:17 http://localhost unstable/main 2012-06-23-1414.42.pdiff [696 B] Fetched 296 kB in 7s (41.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-passwd bsdutils libblkid1 libmount1 libuuid1 mount util-linux 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1300 kB of archives. After this operation, 308 kB disk space will be freed. Get:1 http://localhost/debian/ unstable/main mount amd64 2.20.1-5.1 [213 kB] Get:2 http://localhost/debian/ unstable/main util-linux amd64 2.20.1-5.1 [659 kB] Get:3 http://localhost/debian/ unstable/main base-passwd amd64 3.5.26 [46.3 kB] Get:4 http://localhost/debian/ unstable/main bsdutils amd64 1:2.20.1-5.1 [85.3 kB] Get:5 http://localhost/debian/ unstable/main libuuid1 amd64 2.20.1-5.1 [56.9 kB] Get:6 http://localhost/debian/ unstable/main libblkid1 amd64 2.20.1-5.1 [120 kB] Get:7 http://localhost/debian/ unstable/main libmount1 amd64 2.20.1-5.1 [120 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1300 kB in 0s (13.6 MB/s) (Reading database ... 11730 files and directories currently installed.) Preparing to replace mount 2.20.1-5 (using .../mount_2.20.1-5.1_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace util-linux 2.20.1-5 (using .../util-linux_2.20.1-5.1_amd64.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace base-passwd 3.5.25 (using .../base-passwd_3.5.26_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.26) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace bsdutils 1:2.20.1-5 (using .../bsdutils_1%3a2.20.1-5.1_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace libuuid1:amd64 2.20.1-5 (using .../libuuid1_2.20.1-5.1_amd64.deb) ... Unpacking replacement libuuid1:amd64 ... Setting up libuuid1:amd64 (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace libblkid1:amd64 2.20.1-5 (using .../libblkid1_2.20.1-5.1_amd64.deb) ... Unpacking replacement libblkid1:amd64 ... Setting up libblkid1:amd64 (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace libmount1 2.20.1-5 (using .../libmount1_2.20.1-5.1_amd64.deb) ... Unpacking replacement libmount1 ... Setting up libmount1 (2.20.1-5.1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'biococoa' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/biococoa/trunk/ Need to get 370 kB of source archives. Get:1 http://localhost/debian/ unstable/main biococoa 2.2.2-1 (dsc) [1423 B] Get:2 http://localhost/debian/ unstable/main biococoa 2.2.2-1 (tar) [359 kB] Get:3 http://localhost/debian/ unstable/main biococoa 2.2.2-1 (diff) [9638 B] Fetched 370 kB in 0s (1473 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (30.2 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-dybMrV/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper, libgnustep-base-dev (>= 1.16.1), quilt Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper, libgnustep-base-dev (>= 1.16.1), quilt dpkg-deb: building package `sbuild-build-depends-biococoa-dummy' in `/«BUILDDIR»/resolver-tNLdQF/apt_archive/sbuild-build-depends-biococoa-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install biococoa build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-make gobjc gobjc-4.7 groff-base html2text intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libdbus-1-3 libgcrypt11 libgettextpo0 libglib2.0-0 libgnustep-base-dev libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libmagic1 libobjc3 libobjc4 libp11-kit0 libpcre3 libpipeline1 libtasn1-3 libunistring0 libxml2 libxslt1.1 man-db po-debconf quilt sgml-base xml-core Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gnustep-base-doc gnustep-make-doc gobjc-multilib gobjc-4.7-multilib gcc-4.7-doc libobjc4-dbg groff rng-tools less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent sgml-base-doc Recommended packages: curl wget lynx-cur autopoint dbus libglib2.0-data shared-mime-info libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-make gobjc gobjc-4.7 groff-base html2text intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libdbus-1-3 libgcrypt11 libgettextpo0 libglib2.0-0 libgnustep-base-dev libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libmagic1 libobjc3 libobjc4 libp11-kit0 libpcre3 libpipeline1 libtasn1-3 libunistring0 libxml2 libxslt1.1 man-db po-debconf quilt sbuild-build-depends-biococoa-dummy sgml-base xml-core 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 31.0 MB/31.0 MB of archives. After this operation, 88.2 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:2 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:3 http://localhost/debian/ unstable/main libgpg-error0 amd64 1.10-3 [66.8 kB] Get:4 http://localhost/debian/ unstable/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:5 http://localhost/debian/ unstable/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:6 http://localhost/debian/ unstable/main libtasn1-3 amd64 2.13-2 [67.7 kB] Get:7 http://localhost/debian/ unstable/main libgnutls26 amd64 2.12.20-1 [616 kB] Get:8 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:9 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:10 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:11 http://localhost/debian/ unstable/main libavahi-common-data amd64 0.6.31-1 [134 kB] Get:12 http://localhost/debian/ unstable/main libavahi-common3 amd64 0.6.31-1 [54.3 kB] Get:13 http://localhost/debian/ unstable/main libdbus-1-3 amd64 1.6.0-1 [171 kB] Get:14 http://localhost/debian/ unstable/main libavahi-client3 amd64 0.6.31-1 [59.1 kB] Get:15 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:16 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:17 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:18 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:19 http://localhost/debian/ unstable/main libicu48 amd64 4.8.1.1-8 [8138 kB] Get:20 http://localhost/debian/ unstable/main libobjc3 amd64 4.6.3-7 [185 kB] Get:21 http://localhost/debian/ unstable/main libobjc4 amd64 4.7.1-1 [158 kB] Get:22 http://localhost/debian/ unstable/main libxslt1.1 amd64 1.1.26-12+rebuild1 [252 kB] Get:23 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:24 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:25 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:26 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:27 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:28 http://localhost/debian/ unstable/main autotools-dev all 20120608.1 [73.0 kB] Get:29 http://localhost/debian/ unstable/main cdbs all 0.4.115 [80.2 kB] Get:30 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:31 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:32 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:33 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:34 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:35 http://localhost/debian/ unstable/main diffstat amd64 1.55-3 [30.0 kB] Get:36 http://localhost/debian/ unstable/main gnustep-common amd64 2.6.2-2 [120 kB] Get:37 http://localhost/debian/ unstable/main sgml-base all 1.26+nmu3 [13.5 kB] Get:38 http://localhost/debian/ unstable/main xml-core all 0.13+nmu1 [23.8 kB] Get:39 http://localhost/debian/ unstable/main gnustep-base-common all 1.22.1-2 [206 kB] Get:40 http://localhost/debian/ unstable/main libgnustep-base1.22 amd64 1.22.1-2+b1 [1533 kB] Get:41 http://localhost/debian/ unstable/main gnustep-base-runtime amd64 1.22.1-2+b1 [234 kB] Get:42 http://localhost/debian/ unstable/main gobjc-4.7 amd64 4.7.1-1 [5477 kB] Get:43 http://localhost/debian/ unstable/main gobjc amd64 4:4.7.0-6 [854 B] Get:44 http://localhost/debian/ unstable/main gnustep-make all 2.6.2-2 [230 kB] Get:45 http://localhost/debian/ unstable/main libgnustep-base-dev amd64 1.22.1-2+b1 [2393 kB] Get:46 http://localhost/debian/ unstable/main quilt all 0.60-2 [377 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.0 MB in 1s (24.8 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-1_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ... Selecting previously unselected package libavahi-common-data:amd64. Unpacking libavahi-common-data:amd64 (from .../libavahi-common-data_0.6.31-1_amd64.deb) ... Selecting previously unselected package libavahi-common3:amd64. Unpacking libavahi-common3:amd64 (from .../libavahi-common3_0.6.31-1_amd64.deb) ... Selecting previously unselected package libdbus-1-3:amd64. Unpacking libdbus-1-3:amd64 (from .../libdbus-1-3_1.6.0-1_amd64.deb) ... Selecting previously unselected package libavahi-client3:amd64. Unpacking libavahi-client3:amd64 (from .../libavahi-client3_0.6.31-1_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.3-1_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0:amd64. Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libicu48:amd64. Unpacking libicu48:amd64 (from .../libicu48_4.8.1.1-8_amd64.deb) ... Selecting previously unselected package libobjc3:amd64. Unpacking libobjc3:amd64 (from .../libobjc3_4.6.3-7_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.7.1-1_amd64.deb) ... Selecting previously unselected package libxslt1.1:amd64. Unpacking libxslt1.1:amd64 (from .../libxslt1.1_1.1.26-12+rebuild1_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-8_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.2-1_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120608.1_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.115_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-3_amd64.deb) ... Selecting previously unselected package gnustep-common. Unpacking gnustep-common (from .../gnustep-common_2.6.2-2_amd64.deb) ... Selecting previously unselected package sgml-base. Unpacking sgml-base (from .../sgml-base_1.26+nmu3_all.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu1_all.deb) ... Selecting previously unselected package gnustep-base-common. Unpacking gnustep-base-common (from .../gnustep-base-common_1.22.1-2_all.deb) ... Selecting previously unselected package libgnustep-base1.22. Unpacking libgnustep-base1.22 (from .../libgnustep-base1.22_1.22.1-2+b1_amd64.deb) ... Selecting previously unselected package gnustep-base-runtime. Unpacking gnustep-base-runtime (from .../gnustep-base-runtime_1.22.1-2+b1_amd64.deb) ... Selecting previously unselected package gobjc-4.7. Unpacking gobjc-4.7 (from .../gobjc-4.7_4.7.1-1_amd64.deb) ... Selecting previously unselected package gobjc. Unpacking gobjc (from .../gobjc_4%3a4.7.0-6_amd64.deb) ... Selecting previously unselected package gnustep-make. Unpacking gnustep-make (from .../gnustep-make_2.6.2-2_all.deb) ... Selecting previously unselected package libgnustep-base-dev. Unpacking libgnustep-base-dev (from .../libgnustep-base-dev_1.22.1-2+b1_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ... Selecting previously unselected package sbuild-build-depends-biococoa-dummy. Unpacking sbuild-build-depends-biococoa-dummy (from .../sbuild-build-depends-biococoa-dummy.deb) ... Setting up libpipeline1:amd64 (1.2.1-1) ... Setting up libasprintf0c2:amd64 (0.18.1.1-9) ... Setting up libgpg-error0:amd64 (1.10-3) ... Setting up libgcrypt11:amd64 (1.5.0-3) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-1) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libavahi-common-data:amd64 (0.6.31-1) ... Setting up libavahi-common3:amd64 (0.6.31-1) ... Setting up libdbus-1-3:amd64 (1.6.0-1) ... Setting up libavahi-client3:amd64 (0.6.31-1) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.5-1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up libicu48:amd64 (4.8.1.1-8) ... Setting up libobjc3:amd64 (4.6.3-7) ... Setting up libobjc4:amd64 (4.7.1-1) ... Setting up libxslt1.1:amd64 (1.1.26-12+rebuild1) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up autotools-dev (20120608.1) ... Setting up cdbs (0.4.115) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up diffstat (1.55-3) ... Setting up gnustep-common (2.6.2-2) ... Setting up sgml-base (1.26+nmu3) ... Updating the super catalog... Setting up xml-core (0.13+nmu1) ... Setting up gobjc-4.7 (4.7.1-1) ... Setting up gobjc (4:4.7.0-6) ... Setting up gnustep-make (2.6.2-2) ... Setting up quilt (0.60-2) ... Processing triggers for sgml-base ... Updating the super catalog... Setting up gnustep-base-common (1.22.1-2) ... Setting up libgnustep-base1.22 (1.22.1-2+b1) ... Setting up gnustep-base-runtime (1.22.1-2+b1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libgnustep-base-dev (1.22.1-2+b1) ... Setting up sbuild-build-depends-biococoa-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: apt_0.9.7 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-3 cdbs_0.4.115 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gnustep-base-common_1.22.1-2 gnustep-base-runtime_1.22.1-2+b1 gnustep-common_2.6.2-2 gnustep-make_2.6.2-2 gobjc_4:4.7.0-6 gobjc-4.7_4.7.1-1 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libavahi-client3_0.6.31-1 libavahi-common-data_0.6.31-1 libavahi-common3_0.6.31-1 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdbus-1-3_1.6.0-1 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgnustep-base-dev_1.22.1-2+b1 libgnustep-base1.22_1.22.1-2+b1 libgnutls26_2.12.20-1 libgomp1_4.7.1-1 libgpg-error0_1.10-3 libicu48_4.8.1.1-8 libitm1_4.7.1-1 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libobjc3_4.6.3-7 libobjc4_4.7.1-1 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libxml2_2.8.0+dfsg1-4 libxslt1.1_1.1.26-12+rebuild1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-biococoa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sgml-base_1.26+nmu3 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.1 xml-core_0.13+nmu1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Nov 25 14:59:38 2010 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./biococoa_2.2.2-1.dsc dpkg-source: info: extracting biococoa in biococoa-2.2.2 dpkg-source: info: unpacking biococoa_2.2.2.orig.tar.gz dpkg-source: info: unpacking biococoa_2.2.2-1.debian.tar.gz dpkg-source: info: applying link-libs.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-06a8a67e-f5fe-49f8-ba7a-1574caa9daa0 SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package biococoa dpkg-buildpackage: source version 2.2.2-1 dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build biococoa-2.2.2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,defs -Wl,--as-needed" OPTFLAG=-O2 -k clean This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/«PKGBUILDDIR»' rm -rf ./*~ ./obj Making clean in subprojects of framework BioCocoa... make[2]: Entering directory `/«PKGBUILDDIR»/BCFoundation' rm -rf ./*~ ./obj Making clean in subprojects of subproject BCFoundation... make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCTools' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCTools' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' make[2]: Leaving directory `/«PKGBUILDDIR»/BCFoundation' Making clean for framework BioCocoa... rm -rf \ \ ./BioCocoa.framework ./derived_src make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean rm -f debian/libbiococoa2.install rm -f debian/libbiococoa-dev.install /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi Removing patch link-libs.patch Restoring GNUmakefile No patches applied rm -rf ./.pc rm -f debian/stamp-patch* debian/rules build-arch test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch link-libs.patch patching file GNUmakefile Hunk #1 succeeded at 39 (offset 6 lines). Now at patch link-libs.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,defs -Wl,--as-needed" OPTFLAG=-O2 This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/«PKGBUILDDIR»' Making build-headers in subprojects of framework BioCocoa... make[2]: Entering directory `/«PKGBUILDDIR»/BCFoundation' Making build-headers in subprojects of subproject BCFoundation... make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /usr/bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /usr/bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /usr/bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' Making build-headers for subproject BCAnalysis... /usr/bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /usr/bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' Making build-headers for subproject BCGeneExpression... /usr/bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /usr/bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /usr/bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /usr/bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' Making build-headers for subproject BCGeneticCode... /usr/bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /usr/bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /usr/bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /usr/bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' Making build-headers for subproject BCProteinStructure... /usr/bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /usr/bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /usr/bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /usr/bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /usr/bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /usr/bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' Making build-headers for subproject BCSequence... /usr/bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /usr/bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /usr/bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /usr/bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' Making build-headers for subproject BCSequenceIO... /usr/bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /usr/bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /usr/bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /usr/bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' Making build-headers for subproject BCSymbol... /usr/bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /usr/bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /usr/bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /usr/bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /usr/bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /usr/bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCTools' Making build-headers for subproject BCTools... /usr/bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /usr/bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /usr/bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /usr/bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /usr/bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /usr/bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /usr/bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /usr/bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /usr/bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCTools' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' Making build-headers for subproject BCUtils... /usr/bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /usr/bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /usr/bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' Making build-headers for subproject BCFoundation... /usr/bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /usr/bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /usr/bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /usr/bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h make[2]: Leaving directory `/«PKGBUILDDIR»/BCFoundation' Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of framework BioCocoa... make[2]: Entering directory `/«PKGBUILDDIR»/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of subproject BCFoundation... make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCPairwiseAlignment.m -c \ -MMD -MP -D_FORTIFY_SOURCE=2 -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o In file included from BCPairwiseAlignment.m:31: In file included from ./BCSequenceAlignment.h:36: In file included from /usr/include/GNUstep/Foundation/Foundation.h:30: In file included from /usr/include/GNUstep/GNUstepBase/GSVersionMacros.h:193: In file included from /usr/include/GNUstep/GNUstepBase/GSConfig.h:229: /usr/include/GNUstep/GNUstepBase/preface.h:112:11: fatal error: 'objc/objc.h' file not found #include ^ 1 error generated. make[5]: *** [obj/BCAlignment.obj/BCPairwiseAlignment.m.o] Error 1 make[4]: *** [internal-subproject-all_] Error 2 make[3]: *** [BCAlignment.all.subproject.variables] Error 2 make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[2]: *** [BCFoundation.all.subproject.variables] Error 2 make[1]: *** [BioCocoa.all.framework.variables] Error 2 make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 make[2]: Leaving directory `/«PKGBUILDDIR»/BCFoundation' make[1]: Leaving directory `/«PKGBUILDDIR»' ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-1640 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 2392 Build-Time: 8 Distribution: unstable Fail-Stage: build Install-Time: 10 Job: biococoa_2.2.2-1 Package: biococoa Package-Time: 45 Source-Version: 2.2.2-1 Space: 2392 Status: attempted Version: 2.2.2-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-1640 Build needed 00:00:45, 2392k disc space DC-Status: Failed 45.464759s