DC-Build-Header: elmerfem 6.1.0.svn.5396.dfsg-5.2 / Sat Jun 23 00:51:42 +0000 2012 DC-Task: logfile:/tmp/elmerfem_6.1.0.svn.5396.dfsg-5.2_unstable_clang.log version:6.1.0.svn.5396.dfsg-5.2 chroot:unstable modes:binary-only:clang source:elmerfem architecture:any esttime:3901 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang elmerfem_6.1.0.svn.5396.dfsg-5.2' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-89-17.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ elmerfem 6.1.0.svn.5396.dfsg-5.2 (amd64) 23 Jun 2012 00:51 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: elmerfem Version: 6.1.0.svn.5396.dfsg-5.2 Source Version: 6.1.0.svn.5396.dfsg-5.2 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/elmerfem-1irO15/elmerfem-6.1.0.svn.5396.dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/elmerfem-1irO15' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-75b9cecd-b0ad-4b6a-b08a-a528aa8ba899' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-22-1416.06.pdiff [15.9 kB] Get:7 http://localhost unstable/main amd64 2012-06-22-1416.06.pdiff [23.9 kB] Get:8 http://localhost unstable/main 2012-06-22-1416.06.pdiff [15.9 kB] Get:9 http://localhost unstable/main 2012-06-22-1416.06.pdiff [1537 B] Get:10 http://localhost unstable/main amd64 2012-06-22-1416.06.pdiff [23.9 kB] Get:11 http://localhost unstable/main 2012-06-22-2014.37.pdiff [14.8 kB] Get:12 http://localhost unstable/main 2012-06-22-1416.06.pdiff [1537 B] Get:13 http://localhost unstable/main amd64 2012-06-22-2014.37.pdiff [12.8 kB] Get:14 http://localhost unstable/main 2012-06-22-2014.37.pdiff [14.8 kB] Get:15 http://localhost unstable/main 2012-06-22-2014.37.pdiff [234 B] Get:16 http://localhost unstable/main amd64 2012-06-22-2014.37.pdiff [12.8 kB] Get:17 http://localhost unstable/main 2012-06-22-2014.37.pdiff [234 B] Fetched 327 kB in 5s (59.2 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-passwd zlib1g 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 128 kB of archives. After this operation, 11.3 kB disk space will be freed. Get:1 http://localhost/debian/ unstable/main base-passwd amd64 3.5.25 [40.9 kB] Get:2 http://localhost/debian/ unstable/main zlib1g amd64 1:1.2.7.dfsg-13 [87.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 128 kB in 0s (8859 kB/s) (Reading database ... 11730 files and directories currently installed.) Preparing to replace base-passwd 3.5.24 (using .../base-passwd_3.5.25_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.25) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace zlib1g:amd64 1:1.2.7.dfsg-12 (using .../zlib1g_1%3a1.2.7.dfsg-13_amd64.deb) ... Unpacking replacement zlib1g:amd64 ... Setting up zlib1g:amd64 (1:1.2.7.dfsg-13) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'elmerfem' packaging is maintained in the 'Git' version control system at: git://git.debian.org/git/debian-science/packages/elmerfem.git Need to get 25.2 MB of source archives. Get:1 http://localhost/debian/ unstable/main elmerfem 6.1.0.svn.5396.dfsg-5.2 (dsc) [3013 B] Get:2 http://localhost/debian/ unstable/main elmerfem 6.1.0.svn.5396.dfsg-5.2 (tar) [25.2 MB] Get:3 http://localhost/debian/ unstable/main elmerfem 6.1.0.svn.5396.dfsg-5.2 (diff) [24.6 kB] Fetched 25.2 MB in 1s (17.3 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (36.8 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-UJdiRm/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev | libblas-3gf.so, liblapack-dev | liblapack-3gf.so, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libparpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.5-dev, tcl8.5-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev | libgl-dev, libglu1-mesa-dev | libglu-dev, liboce-modeling-dev, libqt4-dev, qt4-qmake, libqt4-opengl-dev, libqwt5-qt4-dev, libvtk5-qt4-dev (>= 5.8), python-qt4-dev, libscotchmetis-dev, r-base-core, libavcodec-dev, libavutil-dev, libswscale-dev Merged Build-Conflicts: gcc-multilib, libatlas-base-dev, libatlas3gf-base Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev, liblapack-dev, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libparpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.5-dev, tcl8.5-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev, libglu1-mesa-dev, liboce-modeling-dev, libqt4-dev, qt4-qmake, libqt4-opengl-dev, libqwt5-qt4-dev, libvtk5-qt4-dev (>= 5.8), python-qt4-dev, libscotchmetis-dev, r-base-core, libavcodec-dev, libavutil-dev, libswscale-dev Filtered Build-Conflicts: gcc-multilib, libatlas-base-dev, libatlas3gf-base dpkg-deb: building package `sbuild-build-depends-elmerfem-dummy' in `/«BUILDDIR»/resolver-YgeGPC/apt_archive/sbuild-build-depends-elmerfem-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install elmerfem build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser autoconf automake autotools-dev bsdmainutils comerr-dev debhelper diffstat file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.7 groff-base html2text intltool-debian krb5-multidev libamd2.2.0 libarpack2 libarpack2-dev libasprintf0c2 libaudio2 libavcodec-dev libavcodec53 libavformat-dev libavformat53 libavutil-dev libavutil51 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libbtf1.1.0 libcairo2 libcamd2.2.0 libccolamd2.7.1 libcf0 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3-gnutls libcxsparse2.2.3 libdatrie1 libdbus-1-3 libdirac-encoder0 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgcrypt11 libgettextpo0 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libgl2ps-dev libgl2ps0 libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls26 libgpg-error0 libgsm1 libgssapi-krb5-2 libgssrpc4 libhdf5-7 libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libice-dev libice6 libidn11 libjbig-dev libjbig0 libjpeg8 libjpeg8-dev libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkeyutils1 libklu1.1.0 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 liblcms1 libldap-2.4-2 libldl2.0.1 libmagic1 libmng1 libmp3lame0 libmumps-4.10.0 libmumps-dev libmumps-scotch-4.10.0 libmumps-scotch-dev libmysqlclient-dev libmysqlclient18 libncurses5-dev libncursesw5 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnuma1 liboce-foundation-dev liboce-foundation2 liboce-modeling-dev liboce-modeling2 libogg0 libopenjpeg2 libopenmpi-dev libopenmpi1.3 liborc-0.4-0 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libparpack2 libparpack2-dev libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libpython2.7 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libqwt5-qt4 libqwt5-qt4-dev libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libscalapack-mpi-dev libscalapack-mpi1 libschroedinger-1.0-0 libscotch-5.1 libscotch-dev libscotchmetis-dev libsm-dev libsm6 libspeex1 libsqlite3-0 libssh2-1 libssl-dev libssl1.0.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale-dev libswscale2 libtasn1-3 libthai-data libthai0 libtheora0 libtiff4 libtiff4-dev libtiffxx0c2 libtinfo-dev libtorque2 libumfpack5.4.0 libunistring0 libva1 libvorbis0a libvorbisenc2 libvpx1 libvtk5-dev libvtk5-qt4-dev libvtk5.8 libvtk5.8-qt4 libx11-6 libx11-data libx11-dev libx11-xcb1 libx264-123 libxau-dev libxau6 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxml2-dev libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm1 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common openmpi-bin openmpi-common pkg-config po-debconf python python-dev python-minimal python-qt4-dev python-sip python-sip-dev python2.7 python2.7-dev python2.7-minimal qdbus qt4-linguist-tools qt4-qmake quilt r-base-core tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev ttf-dejavu-core unzip x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation doc-base dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.7-multilib gfortran-4.7-doc libgfortran3-dbg groff krb5-doc nas libgsm1-dev libogg-dev libschroedinger-dev libspeex-dev libtheora-dev libvorbis-dev libraw1394-dev libdc1394-22-dev rng-tools krb5-user libice-doc liblcms-utils ncurses-doc netcdf-bin netcdf-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp postgresql-doc-9.1 libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev libicu48 qt4-qtconfig scalapack-doc libsm-doc speex vtk-examples vtk-doc libxcb-doc libxext-doc libxt-doc less www-browser libmail-box-perl python-doc python-tk python-sip-doc python2.7-doc binfmt-support procmail graphviz default-mta mail-transport-agent r-doc-info r-doc-pdf r-mathlib r-base-html tcl-tclreadline tcl8.5-doc tk8.5-doc gvfs-bin Recommended packages: curl wget lynx-cur autopoint ca-certificates dbus libgl1-mesa-dri libglib2.0-data shared-mime-info krb5-locales libgpm2 libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libqt4-sql-sqlite2 libqt4-sql-ibase libcups2 libsasl2-modules libssl-doc libx11-doc xml-core openmpi-checkpoint libmail-sendmail-perl r-recommended r-base-dev r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adduser autoconf automake autotools-dev bsdmainutils comerr-dev debhelper diffstat file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.7 groff-base html2text intltool-debian krb5-multidev libamd2.2.0 libarpack2 libarpack2-dev libasprintf0c2 libaudio2 libavcodec-dev libavcodec53 libavformat-dev libavformat53 libavutil-dev libavutil51 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libbtf1.1.0 libcairo2 libcamd2.2.0 libccolamd2.7.1 libcf0 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3-gnutls libcxsparse2.2.3 libdatrie1 libdbus-1-3 libdirac-encoder0 libdrm2 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgcrypt11 libgettextpo0 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libgl2ps-dev libgl2ps0 libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgnutls26 libgpg-error0 libgsm1 libgssapi-krb5-2 libgssrpc4 libhdf5-7 libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libice-dev libice6 libidn11 libjbig-dev libjbig0 libjpeg8 libjpeg8-dev libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkeyutils1 libklu1.1.0 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 liblcms1 libldap-2.4-2 libldl2.0.1 libmagic1 libmng1 libmp3lame0 libmumps-4.10.0 libmumps-dev libmumps-scotch-4.10.0 libmumps-scotch-dev libmysqlclient-dev libmysqlclient18 libncurses5-dev libncursesw5 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnuma1 liboce-foundation-dev liboce-foundation2 liboce-modeling-dev liboce-modeling2 libogg0 libopenjpeg2 libopenmpi-dev libopenmpi1.3 liborc-0.4-0 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libparpack2 libparpack2-dev libpcre3 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libpython2.7 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libqwt5-qt4 libqwt5-qt4-dev libreadline-dev libreadline6-dev librtmp0 libsasl2-2 libscalapack-mpi-dev libscalapack-mpi1 libschroedinger-1.0-0 libscotch-5.1 libscotch-dev libscotchmetis-dev libsm-dev libsm6 libspeex1 libsqlite3-0 libssh2-1 libssl-dev libssl1.0.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libswscale-dev libswscale2 libtasn1-3 libthai-data libthai0 libtheora0 libtiff4 libtiff4-dev libtiffxx0c2 libtinfo-dev libtorque2 libumfpack5.4.0 libunistring0 libva1 libvorbis0a libvorbisenc2 libvpx1 libvtk5-dev libvtk5-qt4-dev libvtk5.8 libvtk5.8-qt4 libx11-6 libx11-data libx11-dev libx11-xcb1 libx264-123 libxau-dev libxau6 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxml2-dev libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm1 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common openmpi-bin openmpi-common pkg-config po-debconf python python-dev python-minimal python-qt4-dev python-sip python-sip-dev python2.7 python2.7-dev python2.7-minimal qdbus qt4-linguist-tools qt4-qmake quilt r-base-core sbuild-build-depends-elmerfem-dummy tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev ttf-dejavu-core unzip x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev 0 upgraded, 277 newly installed, 0 to remove and 0 not upgraded. Need to get 227 MB/227 MB of archives. After this operation, 611 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libncursesw5 amd64 5.9-9 [141 kB] Get:2 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:3 http://localhost/debian/ unstable/main libpopt0 amd64 1.16-7 [56.4 kB] Get:4 http://localhost/debian/ unstable/main libssl1.0.0 amd64 1.0.1c-3 [1211 kB] Get:5 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:6 http://localhost/debian/ unstable/main libgpg-error0 amd64 1.10-3 [66.8 kB] Get:7 http://localhost/debian/ unstable/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:8 http://localhost/debian/ unstable/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:9 http://localhost/debian/ unstable/main libtasn1-3 amd64 2.13-2 [67.7 kB] Get:10 http://localhost/debian/ unstable/main libgnutls26 amd64 2.12.20-1 [616 kB] Get:11 http://localhost/debian/ unstable/main libkeyutils1 amd64 1.5.5-2 [9300 B] Get:12 http://localhost/debian/ unstable/main libkrb5support0 amd64 1.10.1+dfsg-1 [49.0 kB] Get:13 http://localhost/debian/ unstable/main libk5crypto3 amd64 1.10.1+dfsg-1 [112 kB] Get:14 http://localhost/debian/ unstable/main libkrb5-3 amd64 1.10.1+dfsg-1 [393 kB] Get:15 http://localhost/debian/ unstable/main libgssapi-krb5-2 amd64 1.10.1+dfsg-1 [147 kB] Get:16 http://localhost/debian/ unstable/main libgssrpc4 amd64 1.10.1+dfsg-1 [87.3 kB] Get:17 http://localhost/debian/ unstable/main libidn11 amd64 1.25-2 [178 kB] Get:18 http://localhost/debian/ unstable/main libkadm5clnt-mit8 amd64 1.10.1+dfsg-1 [67.4 kB] Get:19 http://localhost/debian/ unstable/main libkdb5-6 amd64 1.10.1+dfsg-1 [66.2 kB] Get:20 http://localhost/debian/ unstable/main libkadm5srv-mit8 amd64 1.10.1+dfsg-1 [84.4 kB] Get:21 http://localhost/debian/ unstable/main libsasl2-2 amd64 2.1.25.dfsg1-4+b1 [120 kB] Get:22 http://localhost/debian/ unstable/main libldap-2.4-2 amd64 2.4.28-1.3 [240 kB] Get:23 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:24 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:25 http://localhost/debian/ unstable/main libsqlite3-0 amd64 3.7.13-1 [455 kB] Get:26 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:27 http://localhost/debian/ unstable/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:28 http://localhost/debian/ unstable/main x11-common all 1:7.6+13 [278 kB] Get:29 http://localhost/debian/ unstable/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:30 http://localhost/debian/ unstable/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:31 http://localhost/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:32 http://localhost/debian/ unstable/main libxcb1 amd64 1.8.1-1 [50.0 kB] Get:33 http://localhost/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB] Get:34 http://localhost/debian/ unstable/main libx11-6 amd64 2:1.5.0-1 [901 kB] Get:35 http://localhost/debian/ unstable/main libxt6 amd64 1:1.1.3-1 [211 kB] Get:36 http://localhost/debian/ unstable/main libaudio2 amd64 1.9.3-5 [86.4 kB] Get:37 http://localhost/debian/ unstable/main libavutil51 amd64 6:0.8.3-1+b1 [98.8 kB] Get:38 http://localhost/debian/ unstable/main libdirac-encoder0 amd64 1.0.2-6 [389 kB] Get:39 http://localhost/debian/ unstable/main libgsm1 amd64 1.0.13-4 [29.7 kB] Get:40 http://localhost/debian/ unstable/main libmp3lame0 amd64 3.99.5+repack1-3 [404 kB] Get:41 http://localhost/debian/ unstable/main libopenjpeg2 amd64 1.3+dfsg-4+b1 [83.0 kB] Get:42 http://localhost/debian/ unstable/main liborc-0.4-0 amd64 1:0.4.16-2 [179 kB] Get:43 http://localhost/debian/ unstable/main libschroedinger-1.0-0 amd64 1.0.11-2 [330 kB] Get:44 http://localhost/debian/ unstable/main libspeex1 amd64 1.2~rc1-6 [60.5 kB] Get:45 http://localhost/debian/ unstable/main libogg0 amd64 1.3.0-4 [20.6 kB] Get:46 http://localhost/debian/ unstable/main libtheora0 amd64 1.1.1+dfsg.1-3.1 [398 kB] Get:47 http://localhost/debian/ unstable/main libva1 amd64 1.0.15-4 [40.4 kB] Get:48 http://localhost/debian/ unstable/main libvorbis0a amd64 1.3.2-1.3 [109 kB] Get:49 http://localhost/debian/ unstable/main libvorbisenc2 amd64 1.3.2-1.3 [143 kB] Get:50 http://localhost/debian/ unstable/main libvpx1 amd64 1.1.0-1 [290 kB] Get:51 http://localhost/debian/ unstable/main libx264-123 amd64 2:0.123.2189+git35cf912-1 [437 kB] Get:52 http://localhost/debian/ unstable/main libxvidcore4 amd64 2:1.3.2-9 [327 kB] Get:53 http://localhost/debian/ unstable/main libavcodec53 amd64 6:0.8.3-1+b1 [3115 kB] Get:54 http://localhost/debian/ unstable/main librtmp0 amd64 2.4+20111222.git4e06e21-1 [62.3 kB] Get:55 http://localhost/debian/ unstable/main libavformat53 amd64 6:0.8.3-1+b1 [544 kB] Get:56 http://localhost/debian/ unstable/main libexpat1 amd64 2.1.0-1 [141 kB] Get:57 http://localhost/debian/ unstable/main libfreetype6 amd64 2.4.9-1 [450 kB] Get:58 http://localhost/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:59 http://localhost/debian/ unstable/main fontconfig-config all 2.9.0-6 [232 kB] Get:60 http://localhost/debian/ unstable/main libfontconfig1 amd64 2.9.0-6 [299 kB] Get:61 http://localhost/debian/ unstable/main libpixman-1-0 amd64 0.26.0-2 [427 kB] Get:62 http://localhost/debian/ unstable/main libpng12-0 amd64 1.2.49-1 [190 kB] Get:63 http://localhost/debian/ unstable/main libxcb-render0 amd64 1.8.1-1 [18.4 kB] Get:64 http://localhost/debian/ unstable/main libxcb-shm0 amd64 1.8.1-1 [10.1 kB] Get:65 http://localhost/debian/ unstable/main libxrender1 amd64 1:0.9.7-1 [32.2 kB] Get:66 http://localhost/debian/ unstable/main libcairo2 amd64 1.12.2-2 [912 kB] Get:67 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:68 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:69 http://localhost/debian/ unstable/main libssh2-1 amd64 1.4.2-1 [79.0 kB] Get:70 http://localhost/debian/ unstable/main libcurl3-gnutls amd64 7.26.0-1 [321 kB] Get:71 http://localhost/debian/ unstable/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:72 http://localhost/debian/ unstable/main libdbus-1-3 amd64 1.6.0-1 [171 kB] Get:73 http://localhost/debian/ unstable/main libdrm2 amd64 2.4.33-3 [444 kB] Get:74 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:75 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:76 http://localhost/debian/ unstable/main libgfortran3 amd64 4.7.1-1 [352 kB] Get:77 http://localhost/debian/ unstable/main libglapi-mesa amd64 8.0.3-1 [57.3 kB] Get:78 http://localhost/debian/ unstable/main libx11-xcb1 amd64 2:1.5.0-1 [139 kB] Get:79 http://localhost/debian/ unstable/main libxcb-glx0 amd64 1.8.1-1 [32.0 kB] Get:80 http://localhost/debian/ unstable/main libxfixes3 amd64 1:5.0-4 [21.5 kB] Get:81 http://localhost/debian/ unstable/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:82 http://localhost/debian/ unstable/main libxext6 amd64 2:1.3.1-2 [55.3 kB] Get:83 http://localhost/debian/ unstable/main libxxf86vm1 amd64 1:1.1.2-1 [19.0 kB] Get:84 http://localhost/debian/ unstable/main libgl1-mesa-glx amd64 8.0.3-1 [165 kB] Get:85 http://localhost/debian/ unstable/main libglu1-mesa amd64 8.0.3-1 [223 kB] Get:86 http://localhost/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB] Get:87 http://localhost/debian/ unstable/main liblcms1 amd64 1.19.dfsg-1.1 [112 kB] Get:88 http://localhost/debian/ unstable/main libmng1 amd64 1.0.10-3 [235 kB] Get:89 http://localhost/debian/ unstable/main mysql-common all 5.5.24+dfsg-4 [75.8 kB] Get:90 http://localhost/debian/ unstable/main libmysqlclient18 amd64 5.5.24+dfsg-4 [1043 kB] Get:91 http://localhost/debian/ unstable/main libthai-data all 0.1.18-1 [205 kB] Get:92 http://localhost/debian/ unstable/main libthai0 amd64 0.1.18-1 [45.0 kB] Get:93 http://localhost/debian/ unstable/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:94 http://localhost/debian/ unstable/main fontconfig amd64 2.9.0-6 [349 kB] Get:95 http://localhost/debian/ unstable/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:96 http://localhost/debian/ unstable/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:97 http://localhost/debian/ unstable/main libqtcore4 amd64 4:4.8.2-1 [3194 kB] Get:98 http://localhost/debian/ unstable/main libqt4-xml amd64 4:4.8.2-1 [150 kB] Get:99 http://localhost/debian/ unstable/main qdbus amd64 4:4.8.2-1 [73.1 kB] Get:100 http://localhost/debian/ unstable/main libqt4-dbus amd64 4:4.8.2-1 [261 kB] Get:101 http://localhost/debian/ unstable/main libqt4-network amd64 4:4.8.2-1 [750 kB] Get:102 http://localhost/debian/ unstable/main libqt4-script amd64 4:4.8.2-1 [1064 kB] Get:103 http://localhost/debian/ unstable/main libqt4-sql amd64 4:4.8.2-1 [155 kB] Get:104 http://localhost/debian/ unstable/main libqt4-xmlpatterns amd64 4:4.8.2-1 [1495 kB] Get:105 http://localhost/debian/ unstable/main libjbig0 amd64 2.0-2 [32.2 kB] Get:106 http://localhost/debian/ unstable/main libtiff4 amd64 3.9.6-5 [201 kB] Get:107 http://localhost/debian/ unstable/main libqtgui4 amd64 4:4.8.2-1 [5204 kB] Get:108 http://localhost/debian/ unstable/main libqt4-declarative amd64 4:4.8.2-1 [1484 kB] Get:109 http://localhost/debian/ unstable/main libqt4-designer amd64 4:4.8.2-1 [4310 kB] Get:110 http://localhost/debian/ unstable/main libqt4-help amd64 4:4.8.2-1 [288 kB] Get:111 http://localhost/debian/ unstable/main libqt4-opengl amd64 4:4.8.2-1 [416 kB] Get:112 http://localhost/debian/ unstable/main libqt4-qt3support amd64 4:4.8.2-1 [1358 kB] Get:113 http://localhost/debian/ unstable/main libqt4-scripttools amd64 4:4.8.2-1 [316 kB] Get:114 http://localhost/debian/ unstable/main libqt4-svg amd64 4:4.8.2-1 [214 kB] Get:115 http://localhost/debian/ unstable/main libqt4-test amd64 4:4.8.2-1 [111 kB] Get:116 http://localhost/debian/ unstable/main libswscale2 amd64 6:0.8.3-1+b1 [136 kB] Get:117 http://localhost/debian/ unstable/main libtiffxx0c2 amd64 3.9.6-5 [62.9 kB] Get:118 http://localhost/debian/ unstable/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:119 http://localhost/debian/ unstable/main libjbig-dev amd64 2.0-2 [11.3 kB] Get:120 http://localhost/debian/ unstable/main adduser all 3.113+nmu3 [264 kB] Get:121 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:122 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:123 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:124 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:125 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:126 http://localhost/debian/ unstable/main m4 amd64 1.4.16-3 [260 kB] Get:127 http://localhost/debian/ unstable/main mime-support all 3.52-1 [35.5 kB] Get:128 http://localhost/debian/ unstable/main python2.7-minimal amd64 2.7.3-1 [1770 kB] Get:129 http://localhost/debian/ unstable/main python2.7 amd64 2.7.3-1 [2726 kB] Get:130 http://localhost/debian/ unstable/main python-minimal all 2.7.3~rc2-1 [40.4 kB] Get:131 http://localhost/debian/ unstable/main python all 2.7.3~rc2-1 [179 kB] Get:132 http://localhost/debian/ unstable/main autoconf all 2.69-1 [589 kB] Get:133 http://localhost/debian/ unstable/main autotools-dev all 20120608.1 [73.0 kB] Get:134 http://localhost/debian/ unstable/main automake all 1:1.11.5-2 [606 kB] Get:135 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:136 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:137 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:138 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:139 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:140 http://localhost/debian/ unstable/main diffstat amd64 1.55-3 [30.0 kB] Get:141 http://localhost/debian/ unstable/main gfortran-4.7 amd64 4.7.1-1 [6176 kB] Get:142 http://localhost/debian/ unstable/main gfortran amd64 4:4.7.0-6 [1138 B] Get:143 http://localhost/debian/ unstable/main comerr-dev amd64 2.1-1.42.4-3 [42.8 kB] Get:144 http://localhost/debian/ unstable/main krb5-multidev amd64 1.10.1+dfsg-1 [153 kB] Get:145 http://localhost/debian/ unstable/main libamd2.2.0 amd64 1:3.4.0-2 [29.2 kB] Get:146 http://localhost/debian/ unstable/main libblas3 amd64 1.2.20110419-3 [293 kB] Get:147 http://localhost/debian/ unstable/main liblapack3 amd64 3.4.1-3 [5035 kB] Get:148 http://localhost/debian/ unstable/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:149 http://localhost/debian/ unstable/main libnuma1 amd64 2.0.8~rc3-1 [33.4 kB] Get:150 http://localhost/debian/ unstable/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:151 http://localhost/debian/ unstable/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:152 http://localhost/debian/ unstable/main libparpack2 amd64 3.1.1-2 [236 kB] Get:153 http://localhost/debian/ unstable/main libarpack2 amd64 3.1.1-2 [133 kB] Get:154 http://localhost/debian/ unstable/main libavutil-dev amd64 6:0.8.3-1+b1 [151 kB] Get:155 http://localhost/debian/ unstable/main libavcodec-dev amd64 6:0.8.3-1+b1 [3612 kB] Get:156 http://localhost/debian/ unstable/main libavformat-dev amd64 6:0.8.3-1+b1 [728 kB] Get:157 http://localhost/debian/ unstable/main libblas-dev amd64 1.2.20110419-3 [312 kB] Get:158 http://localhost/debian/ unstable/main libbtf1.1.0 amd64 1:3.4.0-2 [13.9 kB] Get:159 http://localhost/debian/ unstable/main libcamd2.2.0 amd64 1:3.4.0-2 [27.7 kB] Get:160 http://localhost/debian/ unstable/main libccolamd2.7.1 amd64 1:3.4.0-2 [31.0 kB] Get:161 http://localhost/debian/ unstable/main libcf0 amd64 1:4.1.3-6 [50.1 kB] Get:162 http://localhost/debian/ unstable/main libcolamd2.7.1 amd64 1:3.4.0-2 [22.2 kB] Get:163 http://localhost/debian/ unstable/main libcholmod1.7.1 amd64 1:3.4.0-2 [456 kB] Get:164 http://localhost/debian/ unstable/main libcsparse2.2.3 amd64 1:3.4.0-2 [29.8 kB] Get:165 http://localhost/debian/ unstable/main libcxsparse2.2.3 amd64 1:3.4.0-2 [110 kB] Get:166 http://localhost/debian/ unstable/main libexpat1-dev amd64 2.1.0-1 [229 kB] Get:167 http://localhost/debian/ unstable/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] Get:168 http://localhost/debian/ unstable/main libfreetype6-dev amd64 2.4.9-1 [803 kB] Get:169 http://localhost/debian/ unstable/main pkg-config amd64 0.26-1 [59.5 kB] Get:170 http://localhost/debian/ unstable/main libfontconfig1-dev amd64 2.9.0-6 [857 kB] Get:171 http://localhost/debian/ unstable/main libftgl2 amd64 2.1.3~rc5-4 [110 kB] Get:172 http://localhost/debian/ unstable/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB] Get:173 http://localhost/debian/ unstable/main x11proto-core-dev all 7.0.23-1 [774 kB] Get:174 http://localhost/debian/ unstable/main libxau-dev amd64 1:1.0.7-1 [21.7 kB] Get:175 http://localhost/debian/ unstable/main libxdmcp-dev amd64 1:1.1.1-1 [42.3 kB] Get:176 http://localhost/debian/ unstable/main x11proto-input-dev all 2.2-1 [172 kB] Get:177 http://localhost/debian/ unstable/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:178 http://localhost/debian/ unstable/main xtrans-dev all 1.2.7-1 [112 kB] Get:179 http://localhost/debian/ unstable/main libpthread-stubs0 amd64 0.3-3 [3228 B] Get:180 http://localhost/debian/ unstable/main libpthread-stubs0-dev amd64 0.3-3 [3998 B] Get:181 http://localhost/debian/ unstable/main libxcb1-dev amd64 1.8.1-1 [86.6 kB] Get:182 http://localhost/debian/ unstable/main libx11-dev amd64 2:1.5.0-1 [1037 kB] Get:183 http://localhost/debian/ unstable/main mesa-common-dev amd64 8.0.3-1 [362 kB] Get:184 http://localhost/debian/ unstable/main x11proto-xext-dev all 7.2.1-1 [273 kB] Get:185 http://localhost/debian/ unstable/main libxext-dev amd64 2:1.3.1-2 [115 kB] Get:186 http://localhost/debian/ unstable/main libgl1-mesa-dev amd64 8.0.3-1 [32.7 kB] Get:187 http://localhost/debian/ unstable/main libglu1-mesa-dev amd64 8.0.3-1 [299 kB] Get:188 http://localhost/debian/ unstable/main libftgl-dev amd64 2.1.3~rc5-4 [942 kB] Get:189 http://localhost/debian/ unstable/main libgl2ps0 amd64 1.3.6-1 [38.6 kB] Get:190 http://localhost/debian/ unstable/main libgl2ps-dev amd64 1.3.6-1 [5200 B] Get:191 http://localhost/debian/ unstable/main libhdf5-7 amd64 1.8.8-9 [1431 kB] Get:192 http://localhost/debian/ unstable/main libice-dev amd64 2:1.0.8-2 [74.1 kB] Get:193 http://localhost/debian/ unstable/main libjpeg8-dev amd64 8d-1 [242 kB] Get:194 http://localhost/debian/ unstable/main libklu1.1.0 amd64 1:3.4.0-2 [109 kB] Get:195 http://localhost/debian/ unstable/main liblapack-dev amd64 3.4.1-3 [5549 kB] Get:196 http://localhost/debian/ unstable/main libldl2.0.1 amd64 1:3.4.0-2 [12.5 kB] Get:197 http://localhost/debian/ unstable/main libmysqlclient-dev amd64 5.5.24+dfsg-4 [1503 kB] Get:198 http://localhost/debian/ unstable/main libtinfo-dev amd64 5.9-9 [105 kB] Get:199 http://localhost/debian/ unstable/main libncurses5-dev amd64 5.9-9 [220 kB] Get:200 http://localhost/debian/ unstable/main libnetcdfc7 amd64 1:4.1.3-6 [355 kB] Get:201 http://localhost/debian/ unstable/main libnetcdff5 amd64 1:4.1.3-6 [139 kB] Get:202 http://localhost/debian/ unstable/main libnetcdfc++4 amd64 1:4.1.3-6 [64.8 kB] Get:203 http://localhost/debian/ unstable/main libnetcdf-dev amd64 1:4.1.3-6 [655 kB] Get:204 http://localhost/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:205 http://localhost/debian/ unstable/main libpng12-dev amd64 1.2.49-1 [266 kB] Get:206 http://localhost/debian/ unstable/main libpq5 amd64 9.1.4-2 [527 kB] Get:207 http://localhost/debian/ unstable/main libssl-dev amd64 1.0.1c-3 [1696 kB] Get:208 http://localhost/debian/ unstable/main libkrb5-dev amd64 1.10.1+dfsg-1 [39.4 kB] Get:209 http://localhost/debian/ unstable/main libpq-dev amd64 9.1.4-2 [613 kB] Get:210 http://localhost/debian/ unstable/main libpython2.7 amd64 2.7.3-1 [1212 kB] Get:211 http://localhost/debian/ unstable/main libqt4-dev-bin amd64 4:4.8.2-1 [2710 kB] Get:212 http://localhost/debian/ unstable/main qt4-linguist-tools amd64 4:4.8.2-1 [1122 kB] Get:213 http://localhost/debian/ unstable/main qt4-qmake amd64 4:4.8.2-1 [1636 kB] Get:214 http://localhost/debian/ unstable/main libqt4-dev amd64 4:4.8.2-1 [1832 kB] Get:215 http://localhost/debian/ unstable/main libqt4-opengl-dev amd64 4:4.8.2-1 [83.3 kB] Get:216 http://localhost/debian/ unstable/main libqwt5-qt4 amd64 5.2.2-3 [314 kB] Get:217 http://localhost/debian/ unstable/main libqwt5-qt4-dev amd64 5.2.2-3 [104 kB] Get:218 http://localhost/debian/ unstable/main libreadline6-dev amd64 6.2-8 [264 kB] Get:219 http://localhost/debian/ unstable/main libreadline-dev amd64 6.2-8 [890 B] Get:220 http://localhost/debian/ unstable/main libsm-dev amd64 2:1.2.1-2 [37.0 kB] Get:221 http://localhost/debian/ unstable/main libumfpack5.4.0 amd64 1:3.4.0-2 [388 kB] Get:222 http://localhost/debian/ unstable/main libsuitesparse-dev amd64 1:3.4.0-2 [1578 kB] Get:223 http://localhost/debian/ unstable/main libsuperlu3 amd64 3.0+20070106-3 [170 kB] Get:224 http://localhost/debian/ unstable/main libsuperlu3-dev amd64 3.0+20070106-3 [573 kB] Get:225 http://localhost/debian/ unstable/main libswscale-dev amd64 6:0.8.3-1+b1 [156 kB] Get:226 http://localhost/debian/ unstable/main libtiff4-dev amd64 3.9.6-5 [337 kB] Get:227 http://localhost/debian/ unstable/main libvtk5.8 amd64 5.8.0-13 [15.5 MB] Get:228 http://localhost/debian/ unstable/main libxt-dev amd64 1:1.1.3-1 [516 kB] Get:229 http://localhost/debian/ unstable/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:230 http://localhost/debian/ unstable/main libxss-dev amd64 1:1.2.2-1 [22.8 kB] Get:231 http://localhost/debian/ unstable/main x11proto-render-dev all 2:0.11.1-2 [20.8 kB] Get:232 http://localhost/debian/ unstable/main libxrender-dev amd64 1:0.9.7-1 [40.4 kB] Get:233 http://localhost/debian/ unstable/main libxft-dev amd64 2.3.1-1 [74.5 kB] Get:234 http://localhost/debian/ unstable/main tcl8.5 amd64 8.5.11-2 [1627 kB] Get:235 http://localhost/debian/ unstable/main tcl8.5-dev amd64 8.5.11-2 [1089 kB] Get:236 http://localhost/debian/ unstable/main tk8.5 amd64 8.5.11-2 [1189 kB] Get:237 http://localhost/debian/ unstable/main tk8.5-dev amd64 8.5.11-2 [1008 kB] Get:238 http://localhost/debian/ unstable/main libxml2-dev amd64 2.8.0+dfsg1-4 [899 kB] Get:239 http://localhost/debian/ unstable/main openmpi-common all 1.4.5-1 [101 kB] Get:240 http://localhost/debian/ unstable/main libibverbs-dev amd64 1.1.6-1 [84.8 kB] Get:241 http://localhost/debian/ unstable/main libopenmpi-dev amd64 1.4.5-1 [2778 kB] Get:242 http://localhost/debian/ unstable/main mpi-default-dev amd64 1.0.1 [3604 B] Get:243 http://localhost/debian/ unstable/main libvtk5-dev amd64 5.8.0-13 [2470 kB] Get:244 http://localhost/debian/ unstable/main libvtk5.8-qt4 amd64 5.8.0-13 [498 kB] Get:245 http://localhost/debian/ unstable/main libvtk5-qt4-dev amd64 5.8.0-13 [110 kB] Get:246 http://localhost/debian/ unstable/main python2.7-dev amd64 2.7.3-1 [22.3 MB] Get:247 http://localhost/debian/ unstable/main python-dev all 2.7.3~rc2-1 [912 B] Get:248 http://localhost/debian/ unstable/main python-sip amd64 4.13.3-1 [157 kB] Get:249 http://localhost/debian/ unstable/main python-sip-dev amd64 4.13.3-1 [190 kB] Get:250 http://localhost/debian/ unstable/main python-qt4-dev all 4.9.1-5 [255 kB] Get:251 http://localhost/debian/ unstable/main quilt all 0.60-2 [377 kB] Get:252 http://localhost/debian/ unstable/main zip amd64 3.0-5 [336 kB] Get:253 http://localhost/debian/ unstable/main unzip amd64 6.0-6 [194 kB] Get:254 http://localhost/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB] Get:255 http://localhost/debian/ unstable/main r-base-core amd64 2.15.1-1 [20.6 MB] Get:256 http://localhost/debian/ unstable/main libparpack2-dev amd64 3.1.1-2 [338 kB] Get:257 http://localhost/debian/ unstable/main libarpack2-dev amd64 3.1.1-2 [185 kB] Get:258 http://localhost/debian/ unstable/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:259 http://localhost/debian/ unstable/main mpi-default-bin amd64 1.0.1 [2990 B] Get:260 http://localhost/debian/ unstable/main libblacs-mpi1 amd64 1.1-31 [68.4 kB] Get:261 http://localhost/debian/ unstable/main libblacs-mpi-dev amd64 1.1-31 [76.5 kB] Get:262 http://localhost/debian/ unstable/main libhypre-2.8.0b amd64 2.8.0b-1 [1778 kB] Get:263 http://localhost/debian/ unstable/main libhypre-dev all 2.8.0b-1 [171 kB] Get:264 http://localhost/debian/ unstable/main libscalapack-mpi1 amd64 1.8.0-9 [3201 kB] Get:265 http://localhost/debian/ unstable/main libmumps-4.10.0 amd64 4.10.0.dfsg-3 [2109 kB] Get:266 http://localhost/debian/ unstable/main libscalapack-mpi-dev amd64 1.8.0-9 [3548 kB] Get:267 http://localhost/debian/ unstable/main libmumps-dev amd64 4.10.0.dfsg-3 [2251 kB] Get:268 http://localhost/debian/ unstable/main libscotch-5.1 amd64 5.1.12b.dfsg-1.1 [774 kB] Get:269 http://localhost/debian/ unstable/main libmumps-scotch-4.10.0 amd64 4.10.0.dfsg-3 [2127 kB] Get:270 http://localhost/debian/ unstable/main libmumps-scotch-dev amd64 4.10.0.dfsg-3 [2247 kB] Get:271 http://localhost/debian/ unstable/main liboce-foundation2 amd64 0.9.1-3 [1639 kB] Get:272 http://localhost/debian/ unstable/main liboce-foundation-dev amd64 0.9.1-3 [1217 kB] Get:273 http://localhost/debian/ unstable/main liboce-modeling2 amd64 0.9.1-3 [15.9 MB] Get:274 http://localhost/debian/ unstable/main liboce-modeling-dev all 0.9.1-3 [3464 kB] Get:275 http://localhost/debian/ unstable/main libscotch-dev amd64 5.1.12b.dfsg-1.1 [958 kB] Get:276 http://localhost/debian/ unstable/main libscotchmetis-dev amd64 5.1.12b.dfsg-1.1 [30.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 227 MB in 10s (21.3 MB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-9_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libpopt0:amd64. Unpacking libpopt0:amd64 (from .../libpopt0_1.16-7_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... 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Unpacking libscotch-dev (from .../libscotch-dev_5.1.12b.dfsg-1.1_amd64.deb) ... Selecting previously unselected package libscotchmetis-dev. Unpacking libscotchmetis-dev (from .../libscotchmetis-dev_5.1.12b.dfsg-1.1_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-elmerfem-dummy. Unpacking sbuild-build-depends-elmerfem-dummy (from .../sbuild-build-depends-elmerfem-dummy.deb) ... Setting up libncursesw5:amd64 (5.9-9) ... Setting up libpipeline1:amd64 (1.2.1-1) ... Setting up libpopt0:amd64 (1.16-7) ... Setting up libssl1.0.0:amd64 (1.0.1c-3) ... Setting up libasprintf0c2:amd64 (0.18.1.1-9) ... Setting up libgpg-error0:amd64 (1.10-3) ... Setting up libgcrypt11:amd64 (1.5.0-3) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-1) ... Setting up libkeyutils1:amd64 (1.5.5-2) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-1) ... Setting up libgssrpc4:amd64 (1.10.1+dfsg-1) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libkadm5clnt-mit8:amd64 (1.10.1+dfsg-1) ... Setting up libkdb5-6:amd64 (1.10.1+dfsg-1) ... Setting up libkadm5srv-mit8:amd64 (1.10.1+dfsg-1) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-4+b1) ... Setting up libldap-2.4-2:amd64 (2.4.28-1.3) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxt6:amd64 (1:1.1.3-1) ... Setting up libaudio2:amd64 (1.9.3-5) ... Setting up libavutil51:amd64 (6:0.8.3-1+b1) ... Setting up libdirac-encoder0:amd64 (1.0.2-6) ... Setting up libgsm1:amd64 (1.0.13-4) ... Setting up libmp3lame0:amd64 (3.99.5+repack1-3) ... Setting up libopenjpeg2 (1.3+dfsg-4+b1) ... Setting up liborc-0.4-0:amd64 (1:0.4.16-2) ... Setting up libschroedinger-1.0-0:amd64 (1.0.11-2) ... Setting up libspeex1:amd64 (1.2~rc1-6) ... Setting up libogg0:amd64 (1.3.0-4) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-3.1) ... Setting up libva1:amd64 (1.0.15-4) ... Setting up libvorbis0a:amd64 (1.3.2-1.3) ... Setting up libvorbisenc2:amd64 (1.3.2-1.3) ... Setting up libvpx1:amd64 (1.1.0-1) ... Setting up libx264-123:amd64 (2:0.123.2189+git35cf912-1) ... Setting up libxvidcore4:amd64 (2:1.3.2-9) ... Setting up libavcodec53:amd64 (6:0.8.3-1+b1) ... Setting up librtmp0:amd64 (2.4+20111222.git4e06e21-1) ... 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Creating config file /etc/papersize with new version Setting up libqtcore4:amd64 (4:4.8.2-1) ... Setting up libqt4-xml:amd64 (4:4.8.2-1) ... Setting up libqt4-sql:amd64 (4:4.8.2-1) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff4:amd64 (3.9.6-5) ... Setting up libqtgui4:amd64 (4:4.8.2-1) ... Setting up libqt4-opengl:amd64 (4:4.8.2-1) ... Setting up libqt4-svg:amd64 (4:4.8.2-1) ... Setting up libqt4-test:amd64 (4:4.8.2-1) ... Setting up libswscale2:amd64 (6:0.8.3-1+b1) ... Setting up libtiffxx0c2:amd64 (3.9.6-5) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libjbig-dev:amd64 (2.0-2) ... Setting up adduser (3.113+nmu3) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up m4 (1.4.16-3) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7-minimal (2.7.3-1) ... Setting up python2.7 (2.7.3-1) ... Setting up python-minimal (2.7.3~rc2-1) ... Setting up python (2.7.3~rc2-1) ... Setting up autoconf (2.69-1) ... Setting up autotools-dev (20120608.1) ... Setting up automake (1:1.11.5-2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up diffstat (1.55-3) ... Setting up gfortran-4.7 (4.7.1-1) ... Setting up gfortran (4:4.7.0-6) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up comerr-dev (2.1-1.42.4-3) ... Setting up krb5-multidev (1.10.1+dfsg-1) ... Setting up libamd2.2.0 (1:3.4.0-2) ... Setting up libblas3 (1.2.20110419-3) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up liblapack3 (3.4.1-3) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode. Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc3-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up libparpack2 (3.1.1-2) ... Setting up libarpack2 (3.1.1-2) ... Setting up libavutil-dev (6:0.8.3-1+b1) ... Setting up libavcodec-dev (6:0.8.3-1+b1) ... Setting up libavformat-dev (6:0.8.3-1+b1) ... Setting up libblas-dev (1.2.20110419-3) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode. Setting up libbtf1.1.0 (1:3.4.0-2) ... Setting up libcamd2.2.0 (1:3.4.0-2) ... Setting up libccolamd2.7.1 (1:3.4.0-2) ... Setting up libcf0 (1:4.1.3-6) ... Setting up libcolamd2.7.1 (1:3.4.0-2) ... Setting up libcholmod1.7.1 (1:3.4.0-2) ... Setting up libcsparse2.2.3 (1:3.4.0-2) ... Setting up libcxsparse2.2.3 (1:3.4.0-2) ... Setting up libexpat1-dev (2.1.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libfreetype6-dev (2.4.9-1) ... Setting up pkg-config (0.26-1) ... Setting up libfontconfig1-dev (2.9.0-6) ... Setting up libftgl2 (2.1.3~rc5-4) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libxau-dev:amd64 (1:1.0.7-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libpthread-stubs0:amd64 (0.3-3) ... Setting up libpthread-stubs0-dev:amd64 (0.3-3) ... Setting up libxcb1-dev:amd64 (1.8.1-1) ... Setting up libx11-dev:amd64 (2:1.5.0-1) ... Setting up mesa-common-dev (8.0.3-1) ... Setting up x11proto-xext-dev (7.2.1-1) ... Setting up libxext-dev:amd64 (2:1.3.1-2) ... Setting up libgl1-mesa-dev (8.0.3-1) ... Setting up libglu1-mesa-dev (8.0.3-1) ... Setting up libftgl-dev (2.1.3~rc5-4) ... Setting up libgl2ps0 (1.3.6-1) ... Setting up libgl2ps-dev (1.3.6-1) ... Setting up libhdf5-7 (1.8.8-9) ... Setting up libice-dev:amd64 (2:1.0.8-2) ... Setting up libjpeg8-dev:amd64 (8d-1) ... Setting up libklu1.1.0 (1:3.4.0-2) ... Setting up liblapack-dev (3.4.1-3) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode. Setting up libldl2.0.1 (1:3.4.0-2) ... Setting up libmysqlclient-dev (5.5.24+dfsg-4) ... Setting up libtinfo-dev:amd64 (5.9-9) ... Setting up libncurses5-dev (5.9-9) ... Setting up libnetcdfc7 (1:4.1.3-6) ... Setting up libnetcdff5 (1:4.1.3-6) ... Setting up libnetcdfc++4 (1:4.1.3-6) ... Setting up libnetcdf-dev (1:4.1.3-6) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpng12-dev (1.2.49-1) ... Setting up libpq5 (9.1.4-2) ... Setting up libssl-dev (1.0.1c-3) ... Setting up libkrb5-dev (1.10.1+dfsg-1) ... Setting up libpq-dev (9.1.4-2) ... Setting up libpython2.7 (2.7.3-1) ... Setting up qt4-linguist-tools (4:4.8.2-1) ... update-alternatives: using /usr/bin/lupdate-qt4 to provide /usr/bin/lupdate (lupdate) in auto mode. update-alternatives: using /usr/bin/lrelease-qt4 to provide /usr/bin/lrelease (lrelease) in auto mode. Setting up qt4-qmake (4:4.8.2-1) ... update-alternatives: using /usr/bin/qmake-qt4 to provide /usr/bin/qmake (qmake) in auto mode. Setting up libqwt5-qt4 (5.2.2-3) ... Setting up libreadline6-dev:amd64 (6.2-8) ... Setting up libreadline-dev:amd64 (6.2-8) ... Setting up libsm-dev:amd64 (2:1.2.1-2) ... Setting up libumfpack5.4.0 (1:3.4.0-2) ... Setting up libsuitesparse-dev (1:3.4.0-2) ... Setting up libsuperlu3 (3.0+20070106-3) ... Setting up libsuperlu3-dev (3.0+20070106-3) ... Setting up libswscale-dev (6:0.8.3-1+b1) ... Setting up libtiff4-dev (3.9.6-5) ... Setting up libvtk5.8 (5.8.0-13) ... Setting up libxt-dev:amd64 (1:1.1.3-1) ... Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libxss-dev:amd64 (1:1.2.2-1) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev:amd64 (1:0.9.7-1) ... Setting up libxft-dev (2.3.1-1) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tcl8.5-dev (8.5.11-2) ... Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up tk8.5-dev (8.5.11-2) ... Setting up libxml2-dev:amd64 (2.8.0+dfsg1-4) ... Setting up openmpi-common (1.4.5-1) ... Setting up libibverbs-dev (1.1.6-1) ... Setting up libopenmpi-dev (1.4.5-1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up mpi-default-dev (1.0.1) ... Setting up libvtk5.8-qt4 (5.8.0-13) ... Setting up python2.7-dev (2.7.3-1) ... Setting up python-dev (2.7.3~rc2-1) ... Setting up python-sip (4.13.3-1) ... Setting up python-sip-dev (4.13.3-1) ... Setting up python-qt4-dev (4.9.1-5) ... Setting up quilt (0.60-2) ... Setting up zip (3.0-5) ... Setting up unzip (6.0-6) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6) ... Setting up r-base-core (2.15.1-1) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up libparpack2-dev (3.1.1-2) ... Setting up libarpack2-dev (3.1.1-2) ... Setting up openmpi-bin (1.4.5-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up mpi-default-bin (1.0.1) ... Setting up libblacs-mpi1 (1.1-31) ... Setting up libblacs-mpi-dev (1.1-31) ... Setting up libhypre-2.8.0b (2.8.0b-1) ... Setting up libhypre-dev (2.8.0b-1) ... Setting up libscalapack-mpi1 (1.8.0-9) ... Setting up libmumps-4.10.0 (4.10.0.dfsg-3) ... Setting up libscalapack-mpi-dev (1.8.0-9) ... Setting up libmumps-dev (4.10.0.dfsg-3) ... Setting up libscotch-5.1 (5.1.12b.dfsg-1.1) ... Setting up libmumps-scotch-4.10.0 (4.10.0.dfsg-3) ... Setting up libmumps-scotch-dev (4.10.0.dfsg-3) ... Setting up liboce-foundation2 (0.9.1-3) ... Setting up liboce-foundation-dev (0.9.1-3) ... Setting up liboce-modeling2 (0.9.1-3) ... Setting up liboce-modeling-dev (0.9.1-3) ... Setting up libscotch-dev (5.1.12b.dfsg-1.1) ... Setting up libscotchmetis-dev (5.1.12b.dfsg-1.1) ... Setting up qdbus (4:4.8.2-1) ... Setting up libqt4-dbus:amd64 (4:4.8.2-1) ... Setting up libqt4-network:amd64 (4:4.8.2-1) ... Setting up libqt4-script:amd64 (4:4.8.2-1) ... Setting up libqt4-xmlpatterns:amd64 (4:4.8.2-1) ... Setting up libqt4-declarative:amd64 (4:4.8.2-1) ... Setting up libqt4-designer:amd64 (4:4.8.2-1) ... Setting up libqt4-help:amd64 (4:4.8.2-1) ... Setting up libqt4-qt3support:amd64 (4:4.8.2-1) ... Setting up libqt4-scripttools:amd64 (4:4.8.2-1) ... Setting up libqt4-dev-bin (4:4.8.2-1) ... update-alternatives: using /usr/bin/moc-qt4 to provide /usr/bin/moc (moc) in auto mode. update-alternatives: using /usr/bin/uic-qt4 to provide /usr/bin/uic (uic) in auto mode. update-alternatives: warning: skip creation of /usr/share/man/man1/uic.1.gz because associated file /usr/share/man/man1/uic-qt4.1.gz (of link group uic) doesn't exist. Setting up libqt4-dev (4:4.8.2-1) ... Setting up libqt4-opengl-dev (4:4.8.2-1) ... Setting up libqwt5-qt4-dev (5.2.2-3) ... Setting up libvtk5-dev (5.8.0-13) ... Setting up libvtk5-qt4-dev (5.8.0-13) ... Setting up sbuild-build-depends-elmerfem-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: adduser_3.113+nmu3 apt_0.9.7 autoconf_2.69-1 automake_1:1.11.5-2 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.25 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 clang_3.1-6 comerr-dev_2.1-1.42.4-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 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libscotch-5.1_5.1.12b.dfsg-1.1 libscotch-dev_5.1.12b.dfsg-1.1 libscotchmetis-dev_5.1.12b.dfsg-1.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsm-dev_2:1.2.1-2 libsm6_2:1.2.1-2 libspeex1_1.2~rc1-6 libsqlite3-0_3.7.13-1 libss2_1.42.4-3 libssh2-1_1.4.2-1 libssl-dev_1.0.1c-3 libssl1.0.0_1.0.1c-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libsuitesparse-dev_1:3.4.0-2 libsuperlu3_3.0+20070106-3 libsuperlu3-dev_3.0+20070106-3 libswitch-perl_2.16-2 libswscale-dev_6:0.8.3-1+b1 libswscale2_6:0.8.3-1+b1 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtheora0_1.1.1+dfsg.1-3.1 libtiff4_3.9.6-5 libtiff4-dev_3.9.6-5 libtiffxx0c2_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-9 libtinfo5_5.9-9 libtorque2_2.4.16+dfsg-1 libumfpack5.4.0_1:3.4.0-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libva1_1.0.15-4 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libvpx1_1.1.0-1 libvtk5-dev_5.8.0-13 libvtk5-qt4-dev_5.8.0-13 libvtk5.8_5.8.0-13 libvtk5.8-qt4_5.8.0-13 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-dev_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libx264-123_2:0.123.2189+git35cf912-1 libxau-dev_1:1.0.7-1 libxau6_1:1.0.7-1 libxcb-glx0_1.8.1-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxcb1-dev_1.8.1-1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.1-2 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft-dev_2.3.1-1 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-4 libxml2-dev_2.8.0+dfsg1-4 libxrender-dev_1:0.9.7-1 libxrender1_1:0.9.7-1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.3-1 libxt6_1:1.1.3-1 libxvidcore4_2:1.3.2-9 libxxf86vm1_1:1.1.2-1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 m4_1.4.16-3 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mesa-common-dev_8.0.3-1 mime-support_3.52-1 mount_2.20.1-5 mpi-default-bin_1.0.1 mpi-default-dev_1.0.1 multiarch-support_2.13-33 mysql-common_5.5.24+dfsg-4 ncurses-base_5.9-9 ncurses-bin_5.9-9 openmpi-bin_1.4.5-1 openmpi-common_1.4.5-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 pkg-config_0.26-1 po-debconf_1.0.16+nmu2 python_2.7.3~rc2-1 python-dev_2.7.3~rc2-1 python-minimal_2.7.3~rc2-1 python-qt4-dev_4.9.1-5 python-sip_4.13.3-1 python-sip-dev_4.13.3-1 python2.7_2.7.3-1 python2.7-dev_2.7.3-1 python2.7-minimal_2.7.3-1 qdbus_4:4.8.2-1 qt4-linguist-tools_4:4.8.2-1 qt4-qmake_4:4.8.2-1 quilt_0.60-2 r-base-core_2.15.1-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-elmerfem-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tcl8.5_8.5.11-2 tcl8.5-dev_8.5.11-2 tk8.5_8.5.11-2 tk8.5-dev_8.5.11-2 ttf-dejavu-core_2.33-2 tzdata_2012c-1 ucf_3.0025+nmu3 unzip_6.0-6 util-linux_2.20.1-5 x11-common_1:7.6+13 x11proto-core-dev_7.0.23-1 x11proto-input-dev_2.2-1 x11proto-kb-dev_1.0.6-2 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.2.1-1 xdg-utils_1.1.0~rc1+git20111210-6 xorg-sgml-doctools_1:1.10-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20120614-1 zip_3.0-5 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri May 25 23:29:59 2012 UTC using RSA key ID EBE2F31F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./elmerfem_6.1.0.svn.5396.dfsg-5.2.dsc dpkg-source: info: extracting elmerfem in elmerfem-6.1.0.svn.5396.dfsg dpkg-source: info: unpacking elmerfem_6.1.0.svn.5396.dfsg.orig.tar.gz dpkg-source: info: unpacking elmerfem_6.1.0.svn.5396.dfsg-5.2.debian.tar.gz dpkg-source: info: applying banish-rpath.patch dpkg-source: info: applying no-metis-partmesh.patch dpkg-source: info: applying ElmerGUI-config.patch dpkg-source: info: applying node-partition.patch dpkg-source: info: applying no-avcore.patch dpkg-source: info: applying lib-link-order.patch dpkg-source: info: applying ElmerGUI-no-strip.patch dpkg-source: info: applying elmer-revision.patch dpkg-source: info: applying libav_071.patch dpkg-source: info: applying glu.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-75b9cecd-b0ad-4b6a-b08a-a528aa8ba899 SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package elmerfem dpkg-buildpackage: source version 6.1.0.svn.5396.dfsg-5.2 dpkg-buildpackage: source changed by Luca Falavigna dpkg-source --before-build elmerfem-6.1.0.svn.5396.dfsg dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean if [ ! -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt push -a; \ fi dh_testdir for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ if [ -e $elmermodule/Makefile ]; then \ echo; echo CLEANING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule maintainer-clean; \ fi; \ done if [ -e ElmerGUI/Makefile ]; then \ export DEB_PY_VERSION=python2.7; \ make -C ElmerGUI distclean; \ fi if [ -e ElmerGUIlogger/Makefile ]; then \ make -C ElmerGUIlogger distclean; \ fi if [ -e utils/ElmerClips/Makefile ]; then \ make -C utils/ElmerClips distclean; \ fi for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do rm -f $missingfile; done for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in ElmerGUIlogger/ElmerGUIlogger.pro; do \ if [ -e $backupfile.bak ]; then \ mv -f $backupfile.bak $backupfile; \ fi; \ done rm -rf elmergrid/src/metis post/src/fonts/TrueType rm -rf ElmerGUI/PythonQt/lib ElmerGUI/matc/lib ElmerGUI/netgen/ngcore rm -f stamp-* if [ -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt pop -a && rm -rf .pc; \ fi Removing patch glu.patch Restoring ElmerGUI/Application/src/glwidget.h Restoring ElmerGUI/Application/Application.pro Removing patch libav_071.patch Restoring utils/ElmerClips/src/encoder.cpp Removing patch elmer-revision.patch Restoring fem/acx_elmer.m4 Removing patch ElmerGUI-no-strip.patch Restoring ElmerGUI/Application/Application.pro Removing patch lib-link-order.patch Restoring ElmerGUI/Application/Application.pro Removing patch no-avcore.patch Restoring utils/ElmerClips/ElmerClips.pro Removing patch node-partition.patch Restoring ElmerGUI/Application/src/parallel.cpp Removing patch ElmerGUI-config.patch Restoring ElmerGUI/ElmerGUI.pri Removing patch no-metis-partmesh.patch Restoring elmergrid/src/femelmer.c Removing patch banish-rpath.patch Restoring fem/src/Makefile.am No patches applied dh_clean debian/rules build-arch if [ ! -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt push -a; \ fi Applying patch banish-rpath.patch patching file fem/src/Makefile.am Applying patch no-metis-partmesh.patch patching file elmergrid/src/femelmer.c Applying patch ElmerGUI-config.patch patching file ElmerGUI/ElmerGUI.pri Applying patch node-partition.patch patching file ElmerGUI/Application/src/parallel.cpp Applying patch no-avcore.patch patching file utils/ElmerClips/ElmerClips.pro Applying patch lib-link-order.patch patching file ElmerGUI/Application/Application.pro Applying patch ElmerGUI-no-strip.patch patching file ElmerGUI/Application/Application.pro Applying patch elmer-revision.patch patching file fem/acx_elmer.m4 Applying patch libav_071.patch patching file utils/ElmerClips/src/encoder.cpp Applying patch glu.patch patching file ElmerGUI/Application/Application.pro patching file ElmerGUI/Application/src/glwidget.h Now at patch glu.patch dh_testdir for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in ElmerGUIlogger/ElmerGUIlogger.pro; do \ cp -a $backupfile $backupfile.bak; \ done mkdir elmergrid/src/metis install -d post/src/fonts/TrueType for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do touch $missingfile; done for aclocaldir in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo Running aclocal/automake in module $aclocaldir; \ (cd $aclocaldir && aclocal && automake); \ done Running aclocal/automake in module eio configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level Running aclocal/automake in module matc Running aclocal/automake in module elmerparam configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level Running aclocal/automake in module hutiter configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level Running aclocal/automake in module meshgen2d Running aclocal/automake in module fem configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level Running aclocal/automake in module front src/Makefile.am:76: `%'-style pattern rules are a GNU make extension Running aclocal/automake in module elmergrid Running aclocal/automake in module post configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level src/Makefile.am:48: `%'-style pattern rules are a GNU make extension set -e; for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo; echo CONFIGURING ELMER MODULE $elmermodule; echo; \ (cd $elmermodule && \ autoconf && \ LIBS="-L/«PKGBUILDDIR»/debian/tmp/usr/lib" \ CPPFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2" \ FCPPFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include" \ CFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC" \ CXXFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC" \ FCFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC" \ ./configure --prefix=/usr --with-metis=/usr \ --with-mpi-dir=/usr --with-mpi-inc-dir=/usr/include/mpi \ --with-blas=-lblas --with-lapack=-llapack \ --with-mumps=dmumps_scotch); \ echo; echo BUILDING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule; \ echo; echo INSTALLING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule install DESTDIR=/«PKGBUILDDIR»/debian/tmp; \ done CONFIGURING ELMER MODULE eio configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for dummy main to link with Fortran libraries... (cached) none checking whether we are using the Microsoft C compiler... no checking for Fortran char* mangling scheme... char_ptr checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for ANSI C header files... (cached) yes checking whether we are using the Microsoft C compiler... (cached) no configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE eio make[1]: Entering directory `/«PKGBUILDDIR»/eio' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»/eio' Making all in include make[3]: Entering directory `/«PKGBUILDDIR»/eio/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/eio/include' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/eio/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOConstraintAgent.o -MD -MP -MF .deps/EIOConstraintAgent.Tpo -c -o EIOConstraintAgent.o EIOConstraintAgent.cpp EIOConstraintAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "constraints.header", ^ EIOConstraintAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "constraints.table" ^ 2 warnings generated. mv -f .deps/EIOConstraintAgent.Tpo .deps/EIOConstraintAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIODualMeshAgent.o -MD -MP -MF .deps/EIODualMeshAgent.Tpo -c -o EIODualMeshAgent.o EIODualMeshAgent.cpp EIODualMeshAgent.cpp:31:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.header", ^ EIODualMeshAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/dual.elements" ^ 2 warnings generated. mv -f .deps/EIODualMeshAgent.Tpo .deps/EIODualMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOGeometryAgent.o -MD -MP -MF .deps/EIOGeometryAgent.Tpo -c -o EIOGeometryAgent.o EIOGeometryAgent.cpp EIOGeometryAgent.cpp:30:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.header", ^ EIOGeometryAgent.cpp:31:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.nodes", ^ EIOGeometryAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.elements", ^ EIOGeometryAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.bodies", ^ EIOGeometryAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.loops", ^ EIOGeometryAgent.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "geometry.boundaries" ^ 6 warnings generated. mv -f .deps/EIOGeometryAgent.Tpo .deps/EIOGeometryAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOMeshAgent.o -MD -MP -MF .deps/EIOMeshAgent.Tpo -c -o EIOMeshAgent.o EIOMeshAgent.cpp EIOMeshAgent.cpp:73:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.header", ^ EIOMeshAgent.cpp:74:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.nodes", ^ EIOMeshAgent.cpp:75:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.elements", ^ EIOMeshAgent.cpp:76:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "/mesh.boundary" ^ EIOMeshAgent.cpp:79:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.header", ^ EIOMeshAgent.cpp:80:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.nodes", ^ EIOMeshAgent.cpp:81:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.elements", ^ EIOMeshAgent.cpp:82:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.boundary", //"%s/%s.part.%d.boundary", ^ EIOMeshAgent.cpp:83:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.shared" ^ 9 warnings generated. mv -f .deps/EIOMeshAgent.Tpo .deps/EIOMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelDataAgent.o -MD -MP -MF .deps/EIOModelDataAgent.Tpo -c -o EIOModelDataAgent.o EIOModelDataAgent.cpp EIOModelDataAgent.cpp:101:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.header", ^ EIOModelDataAgent.cpp:102:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.coordinates", ^ EIOModelDataAgent.cpp:103:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.mesh_parameters", ^ EIOModelDataAgent.cpp:104:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.materials", ^ EIOModelDataAgent.cpp:105:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.boundary_conditions", ^ EIOModelDataAgent.cpp:106:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.initial_conditions", ^ EIOModelDataAgent.cpp:107:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.body_equations", ^ EIOModelDataAgent.cpp:108:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.body_forces", ^ EIOModelDataAgent.cpp:109:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.constants", ^ EIOModelDataAgent.cpp:110:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "modeldata.bodies" ^ EIOModelDataAgent.cpp:214:18: warning: array index 9 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODIES]; ^ ~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:229:18: warning: array index 9 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODIES]; ^ ~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:243:18: warning: array index 8 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[CONSTANTS]; ^ ~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:256:18: warning: array index 8 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[CONSTANTS]; ^ ~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:331:18: warning: array index 3 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[MATERIALS]; ^ ~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:339:18: warning: array index 3 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[MATERIALS]; ^ ~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:347:18: warning: array index 3 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[MATERIALS]; ^ ~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:355:18: warning: array index 3 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[MATERIALS]; ^ ~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:363:18: warning: array index 4 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BOUNDARYCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:372:18: warning: array index 4 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BOUNDARYCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:380:18: warning: array index 4 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BOUNDARYCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:388:18: warning: array index 4 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BOUNDARYCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:396:18: warning: array index 5 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[INITIALCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:405:18: warning: array index 5 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[INITIALCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:413:18: warning: array index 5 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[INITIALCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:421:18: warning: array index 5 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[INITIALCONDITIONS]; ^ ~~~~~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:429:18: warning: array index 6 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYEQUATIONS]; ^ ~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:438:18: warning: array index 6 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYEQUATIONS]; ^ ~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:446:18: warning: array index 6 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYEQUATIONS]; ^ ~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:454:18: warning: array index 6 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYEQUATIONS]; ^ ~~~~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:462:18: warning: array index 7 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYFORCES]; ^ ~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:471:18: warning: array index 7 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYFORCES]; ^ ~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:479:18: warning: array index 7 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYFORCES]; ^ ~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ EIOModelDataAgent.cpp:487:18: warning: array index 7 is past the end of the array (which contains 3 elements) [-Warray-bounds] fstream& str = modelDataFileStream[BODYFORCES]; ^ ~~~~~~~~~~ ../include/EIOModelDataAgent.h:116:3: note: array 'modelDataFileStream' declared here fstream modelDataFileStream[modelDataFiles]; ^ 34 warnings generated. mv -f .deps/EIOModelDataAgent.Tpo .deps/EIOModelDataAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelManager.o -MD -MP -MF .deps/EIOModelManager.Tpo -c -o EIOModelManager.o EIOModelManager.cpp mv -f .deps/EIOModelManager.Tpo .deps/EIOModelManager.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOPartWriter.o -MD -MP -MF .deps/EIOPartWriter.Tpo -c -o EIOPartWriter.o EIOPartWriter.cpp EIOPartWriter.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.header", ^ EIOPartWriter.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.nodes", ^ EIOPartWriter.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.shared", ^ EIOPartWriter.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.elements", ^ EIOPartWriter.cpp:36:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "%s/part.%d.border" ^ 5 warnings generated. mv -f .deps/EIOPartWriter.Tpo .deps/EIOPartWriter.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOSolverAgent.o -MD -MP -MF .deps/EIOSolverAgent.Tpo -c -o EIOSolverAgent.o EIOSolverAgent.cpp EIOSolverAgent.cpp:32:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "solver.header", ^ EIOSolverAgent.cpp:33:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "solver.records", ^ EIOSolverAgent.cpp:34:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "timestep.header", ^ EIOSolverAgent.cpp:35:3: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] "timestep.records" ^ 4 warnings generated. mv -f .deps/EIOSolverAgent.Tpo .deps/EIOSolverAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_c.o -MD -MP -MF .deps/eio_api_c.Tpo -c -o eio_api_c.o eio_api_c.cpp eio_api_c.cpp:59:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:59:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_c.cpp:59:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_c.cpp:76:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:76:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_c.cpp:76:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_c.cpp:114:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:114:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_c.cpp:114:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_c.cpp:127:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:127:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_c.cpp:127:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_c.cpp:268:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(meshAgent = new EIOMeshAgent(modelManager)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:268:16: note: place parentheses around the assignment to silence this warning if(meshAgent = new EIOMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:268:16: note: use '==' to turn this assignment into an equality comparison if(meshAgent = new EIOMeshAgent(modelManager)) ^ == eio_api_c.cpp:403:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:403:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:403:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_c.cpp:416:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:416:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_c.cpp:416:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_c.cpp:454:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:454:25: note: place parentheses around the assignment to silence this warning if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ ( ) eio_api_c.cpp:454:25: note: use '==' to turn this assignment into an equality comparison if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ == eio_api_c.cpp:575:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:575:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_c.cpp:575:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_c.cpp:588:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:588:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_c.cpp:588:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_c.cpp:942:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:942:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_c.cpp:942:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_c.cpp:955:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_c.cpp:955:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_c.cpp:955:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == 12 warnings generated. mv -f .deps/eio_api_c.Tpo .deps/eio_api_c.Po rm -f libeioc.a ar cru libeioc.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_c.o ranlib libeioc.a g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_f.o -MD -MP -MF .deps/eio_api_f.Tpo -c -o eio_api_f.o eio_api_f.cpp eio_api_f.cpp:60:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:60:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_f.cpp:60:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_f.cpp:77:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelManager = new EIOModelManager) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:77:19: note: place parentheses around the assignment to silence this warning if(modelManager = new EIOModelManager) ^ ( ) eio_api_f.cpp:77:19: note: use '==' to turn this assignment into an equality comparison if(modelManager = new EIOModelManager) ^ == eio_api_f.cpp:115:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:115:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_f.cpp:115:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_f.cpp:128:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(geometryAgent = new EIOGeometryAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:128:20: note: place parentheses around the assignment to silence this warning if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ ( ) eio_api_f.cpp:128:20: note: use '==' to turn this assignment into an equality comparison if(geometryAgent = new EIOGeometryAgent(modelManager)) ^ == eio_api_f.cpp:269:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(meshAgent = new EIOMeshAgent(modelManager)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:269:16: note: place parentheses around the assignment to silence this warning if(meshAgent = new EIOMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:269:16: note: use '==' to turn this assignment into an equality comparison if(meshAgent = new EIOMeshAgent(modelManager)) ^ == eio_api_f.cpp:402:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:402:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:402:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_f.cpp:415:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:415:20: note: place parentheses around the assignment to silence this warning if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ ( ) eio_api_f.cpp:415:20: note: use '==' to turn this assignment into an equality comparison if(dualMeshAgent = new EIODualMeshAgent(modelManager)) ^ == eio_api_f.cpp:453:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:453:25: note: place parentheses around the assignment to silence this warning if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ ( ) eio_api_f.cpp:453:25: note: use '==' to turn this assignment into an equality comparison if(partitioningWriter = new EIOPartWriter(parts, modelManager)) ^ == eio_api_f.cpp:574:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:574:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_f.cpp:574:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_f.cpp:587:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(modelDataAgent = new EIOModelDataAgent(modelManager)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:587:21: note: place parentheses around the assignment to silence this warning if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ ( ) eio_api_f.cpp:587:21: note: use '==' to turn this assignment into an equality comparison if(modelDataAgent = new EIOModelDataAgent(modelManager)) ^ == eio_api_f.cpp:941:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:941:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_f.cpp:941:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == eio_api_f.cpp:954:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if(solverAgent = new EIOSolverAgent(modelManager)) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eio_api_f.cpp:954:18: note: place parentheses around the assignment to silence this warning if(solverAgent = new EIOSolverAgent(modelManager)) ^ ( ) eio_api_f.cpp:954:18: note: use '==' to turn this assignment into an equality comparison if(solverAgent = new EIOSolverAgent(modelManager)) ^ == 12 warnings generated. mv -f .deps/eio_api_f.Tpo .deps/eio_api_f.Po rm -f libeiof.a ar cru libeiof.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_f.o ranlib libeiof.a make[3]: Leaving directory `/«PKGBUILDDIR»/eio/src' make[3]: Entering directory `/«PKGBUILDDIR»/eio' make[3]: Leaving directory `/«PKGBUILDDIR»/eio' make[2]: Leaving directory `/«PKGBUILDDIR»/eio' make[1]: Leaving directory `/«PKGBUILDDIR»/eio' INSTALLING ELMER MODULE eio make[1]: Entering directory `/«PKGBUILDDIR»/eio' Making install in include make[2]: Entering directory `/«PKGBUILDDIR»/eio/include' make[3]: Entering directory `/«PKGBUILDDIR»/eio/include' make[3]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /usr/bin/install -c -m 644 eio_api.h '/«PKGBUILDDIR»/debian/tmp/usr/include' make[3]: Leaving directory `/«PKGBUILDDIR»/eio/include' make[2]: Leaving directory `/«PKGBUILDDIR»/eio/include' Making install in src make[2]: Entering directory `/«PKGBUILDDIR»/eio/src' make[3]: Entering directory `/«PKGBUILDDIR»/eio/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libeioc.a libeiof.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libeioc.a ) ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libeiof.a ) make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/eio/src' make[2]: Leaving directory `/«PKGBUILDDIR»/eio/src' make[2]: Entering directory `/«PKGBUILDDIR»/eio' make[3]: Entering directory `/«PKGBUILDDIR»/eio' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/eio' make[2]: Leaving directory `/«PKGBUILDDIR»/eio' make[1]: Leaving directory `/«PKGBUILDDIR»/eio' CONFIGURING ELMER MODULE matc configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for ranlib... ranlib checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking for main in -lm... yes checking for main in -lcurses... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for tputs in -lncurses... yes checking for rl_set_keyboard_input_timeout in -lreadline... yes checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE matc make[1]: Entering directory `/«PKGBUILDDIR»/matc' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»/matc' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/matc/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT c3d.o -MD -MP -MF .deps/c3d.Tpo -c -o c3d.o c3d.c mv -f .deps/c3d.Tpo .deps/c3d.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT clip.o -MD -MP -MF .deps/clip.Tpo -c -o clip.o clip.c mv -f .deps/clip.Tpo .deps/clip.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT dri_ps.o -MD -MP -MF .deps/dri_ps.Tpo -c -o dri_ps.o dri_ps.c mv -f .deps/dri_ps.Tpo .deps/dri_ps.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eig.o -MD -MP -MF .deps/eig.Tpo -c -o eig.o eig.c mv -f .deps/eig.Tpo .deps/eig.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT error.o -MD -MP -MF .deps/error.Tpo -c -o error.o error.c mv -f .deps/error.Tpo .deps/error.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.c eval.c:488:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fnc = fnc_check(name)) fnc_free_entry(fnc); ~~~~^~~~~~~~~~~~~~~~~ eval.c:488:17: note: place parentheses around the assignment to silence this warning if (fnc = fnc_check(name)) fnc_free_entry(fnc); ^ ( ) eval.c:488:17: note: use '==' to turn this assignment into an equality comparison if (fnc = fnc_check(name)) fnc_free_entry(fnc); ^ == eval.c:440:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(root->data) ^ 2 warnings generated. mv -f .deps/eval.Tpo .deps/eval.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT files.o -MD -MP -MF .deps/files.Tpo -c -o files.o files.c mv -f .deps/files.Tpo .deps/files.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT funcs.o -MD -MP -MF .deps/funcs.Tpo -c -o funcs.o funcs.c funcs.c:321:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 1 warning generated. mv -f .deps/funcs.Tpo .deps/funcs.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra.o -MD -MP -MF .deps/gra.Tpo -c -o gra.o gra.c mv -f .deps/gra.Tpo .deps/gra.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra_com.o -MD -MP -MF .deps/gra_com.Tpo -c -o gra_com.o gra_com.c mv -f .deps/gra_com.Tpo .deps/gra_com.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT jacobi.o -MD -MP -MF .deps/jacobi.Tpo -c -o jacobi.o jacobi.c mv -f .deps/jacobi.Tpo .deps/jacobi.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lists.o -MD -MP -MF .deps/lists.Tpo -c -o lists.o lists.c mv -f .deps/lists.Tpo .deps/lists.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lu.o -MD -MP -MF .deps/lu.Tpo -c -o lu.o lu.c mv -f .deps/lu.Tpo .deps/lu.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matc.o -MD -MP -MF .deps/matc.Tpo -c -o matc.o matc.c matc.c:406:8: warning: implicit declaration of function 'isatty' is invalid in C99 [-Wimplicit-function-declaration] if (isatty(fileno(math_in)) && isatty(fileno(math_out))) ^ 1 warning generated. mv -f .deps/matc.Tpo .deps/matc.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matrix.o -MD -MP -MF .deps/matrix.Tpo -c -o matrix.o matrix.c matrix.c:189:25: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration] if (seed == 0) seed = time(NULL); ^ 1 warning generated. mv -f .deps/matrix.Tpo .deps/matrix.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT oper.o -MD -MP -MF .deps/oper.Tpo -c -o oper.o oper.c mv -f .deps/oper.Tpo .deps/oper.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT optim.o -MD -MP -MF .deps/optim.Tpo -c -o optim.o optim.c optim.c:146:26: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] if (com -> flags && CMDFLAG_CE) ^ ~~~~~~~~~~ optim.c:146:26: note: use '&' for a bitwise operation if (com -> flags && CMDFLAG_CE) ^~ & optim.c:146:26: note: remove constant to silence this warning if (com -> flags && CMDFLAG_CE) ~^~~~~~~~~~~~~ optim.c:537:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(cptr->data) ^ 2 warnings generated. mv -f .deps/optim.Tpo .deps/optim.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o parser.c parser.c:299:12: warning: 40 enumeration values not handled in switch: 'nullsym', 'rightpar', 'indopen'... [-Wswitch] switch(symbol) ^ parser.c:446:10: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:502:12: warning: 41 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:526:12: warning: 41 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:545:12: warning: 40 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:575:12: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:590:12: warning: 37 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:624:12: warning: 38 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:655:12: warning: 35 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:697:12: warning: 29 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:738:12: warning: 42 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:752:12: warning: 28 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:801:12: warning: 26 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ parser.c:854:12: warning: 25 enumeration values not handled in switch: 'nullsym', 'leftpar', 'rightpar'... [-Wswitch] switch(symbol) ^ 14 warnings generated. mv -f .deps/parser.Tpo .deps/parser.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT str.o -MD -MP -MF .deps/str.Tpo -c -o str.o str.c str.c:85:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security] sprintf(str_pstr, fmt); ^~~ 1 warning generated. mv -f .deps/str.Tpo .deps/str.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT urand.o -MD -MP -MF .deps/urand.Tpo -c -o urand.o urand.c mv -f .deps/urand.Tpo .deps/urand.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT variable.o -MD -MP -MF .deps/variable.Tpo -c -o variable.o variable.c mv -f .deps/variable.Tpo .deps/variable.Po rm -f libmatc.a ar cru libmatc.a c3d.o clip.o dri_ps.o eig.o error.o eval.o files.o funcs.o gra.o gra_com.o jacobi.o lists.o lu.o matc.o matrix.o oper.o optim.o parser.o str.o urand.o variable.o ranlib libmatc.a gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c main.c:22:9: warning: implicit declaration of function 'mtc_init' is invalid in C99 [-Wimplicit-function-declaration] (void)mtc_init( stdin, stdout, stderr ); ^ main.c:23:17: warning: implicit declaration of function 'mtc_domath' is invalid in C99 [-Wimplicit-function-declaration] str = (char *)mtc_domath( "source(\"mc.ini\")" ); ^ main.c:52:7: warning: implicit declaration of function 'free' is invalid in C99 [-Wimplicit-function-declaration] free(str); ^ 3 warnings generated. mv -f .deps/main.Tpo .deps/main.Po gcc -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -o matc main.o libmatc.a -lreadline -lncurses -lcurses -lm -L/«PKGBUILDDIR»/debian/tmp/usr/lib make[3]: Leaving directory `/«PKGBUILDDIR»/matc/src' make[3]: Entering directory `/«PKGBUILDDIR»/matc' make[3]: Leaving directory `/«PKGBUILDDIR»/matc' make[2]: Leaving directory `/«PKGBUILDDIR»/matc' make[1]: Leaving directory `/«PKGBUILDDIR»/matc' INSTALLING ELMER MODULE matc make[1]: Entering directory `/«PKGBUILDDIR»/matc' Making install in src make[2]: Entering directory `/«PKGBUILDDIR»/matc/src' make[3]: Entering directory `/«PKGBUILDDIR»/matc/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c matc '/«PKGBUILDDIR»/debian/tmp/usr/bin' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libmatc.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libmatc.a ) /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/elmer' /usr/bin/install -c -m 644 elmer/matc.h elmer/fnames.h elmer/gra.h '/«PKGBUILDDIR»/debian/tmp/usr/include/elmer' make[3]: Leaving directory `/«PKGBUILDDIR»/matc/src' make[2]: Leaving directory `/«PKGBUILDDIR»/matc/src' make[2]: Entering directory `/«PKGBUILDDIR»/matc' make[3]: Entering directory `/«PKGBUILDDIR»/matc' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/matc' make[2]: Leaving directory `/«PKGBUILDDIR»/matc' make[1]: Leaving directory `/«PKGBUILDDIR»/matc' CONFIGURING ELMER MODULE elmerparam configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for ranlib... ranlib checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for xlf90... no checking for pathf90... no checking for ifort... no checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for option needed by f95 to find non-local *.mod-files... -I checking for *.mod-file naming convention... modulename.mod checking for iargc() declaration needed in Fortran code... !none iargc_decl = !none ./configure: line 4431: ACX_CHECK_B64FLAGS: command not found checking for R... yes checking for matlab... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/iargc_decl.inc config.status: creating src/R/elmerparam/src/Makevars config.status: creating src/R/Makefile config.status: creating src/matlab/Makefile config.status: creating test/Makefile config.status: creating test/make.inc config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE elmerparam make[1]: Entering directory `/«PKGBUILDDIR»/elmerparam' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /«PKGBUILDDIR»/elmerparam/missing --run autoheader) configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»/elmerparam' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam/src' Making all in . make[4]: Entering directory `/«PKGBUILDDIR»/elmerparam/src' cc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -MT elmerparam.o -MD -MP -MF .deps/elmerparam.Tpo -c -o elmerparam.o elmerparam.c mv -f .deps/elmerparam.Tpo .deps/elmerparam.Po cc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -MT modelline.o -MD -MP -MF .deps/modelline.Tpo -c -o modelline.o modelline.c mv -f .deps/modelline.Tpo .deps/modelline.Po cc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -MT dynarray.o -MD -MP -MF .deps/dynarray.Tpo -c -o dynarray.o dynarray.c mv -f .deps/dynarray.Tpo .deps/dynarray.Po rm -f libelmerparam.a ar cru libelmerparam.a elmerparam.o modelline.o dynarray.o ranlib libelmerparam.a f95 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -c -o elmerparamf.o elmerparamf.f90 rm -f libelmerparamf.a ar cru libelmerparamf.a elmerparamf.o ranlib libelmerparamf.a f95 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -c -o ElmerParam.o ElmerParam.f90 f95 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -o ElmerParam ElmerParam.o libelmerparamf.a libelmerparam.a -L/usr/lib -lmatc -L/«PKGBUILDDIR»/debian/tmp/usr/lib make[4]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src' Making all in R make[4]: Entering directory `/«PKGBUILDDIR»/elmerparam/src/R' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src/R' make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src' Making all in test make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam/test' make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam' make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam' make[2]: Leaving directory `/«PKGBUILDDIR»/elmerparam' make[1]: Leaving directory `/«PKGBUILDDIR»/elmerparam' INSTALLING ELMER MODULE elmerparam make[1]: Entering directory `/«PKGBUILDDIR»/elmerparam' Making install in src make[2]: Entering directory `/«PKGBUILDDIR»/elmerparam/src' Making install in . make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam/src' make[4]: Entering directory `/«PKGBUILDDIR»/elmerparam/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c ElmerParam '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c elmerparam.mod /«PKGBUILDDIR»/debian/tmp/usr/include /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libelmerparam.a libelmerparamf.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libelmerparam.a ) ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libelmerparamf.a ) /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /usr/bin/install -c -m 644 elmerparam.h '/«PKGBUILDDIR»/debian/tmp/usr/include' make[4]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src' make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src' Making install in R make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam/src/R' R CMD build elmerparam * checking for file 'elmerparam/DESCRIPTION' ... OK * preparing 'elmerparam': * checking DESCRIPTION meta-information ... OK * cleaning src Warning: /tmp/RtmpfdG0XU/Rbuild15397b8d3ef0/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * creating default NAMESPACE file * building 'elmerparam_1.0.tar.gz' test -z "/«PKGBUILDDIR»/debian/tmp/usr/lib/R" || mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/lib/R R CMD INSTALL -l /«PKGBUILDDIR»/debian/tmp/usr/lib/R elmerparam * installing *source* package 'elmerparam' ... ** Creating default NAMESPACE file ** libs make[4]: Entering directory `/«PKGBUILDDIR»/elmerparam/src/R/elmerparam/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/«PKGBUILDDIR»/debian/tmp/usr/include -fpic -O2 -pipe -g -c elmerparam_rwrapper.c -o elmerparam_rwrapper.o elmerparam_rwrapper.c:55:8: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types] tagp = CHAR(tag); ^ ~~~~~~~~~ 1 warning generated. gcc -std=gnu99 -shared -o elmerparam.so elmerparam_rwrapper.o -L/usr/lib -L/«PKGBUILDDIR»/debian/tmp/usr/lib -lelmerparam -lmatc -L/usr/lib/R/lib -lR make[4]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src/R/elmerparam/src' installing to /«PKGBUILDDIR»/debian/tmp/usr/lib/R/elmerparam/libs ** R ** preparing package for lazy loading ** help Warning: /«PKGBUILDDIR»/elmerparam/src/R/elmerparam/man/elmer-package.Rd:33: All text must be in a section Warning: /«PKGBUILDDIR»/elmerparam/src/R/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' *** installing help indices ** building package indices ** testing if installed package can be loaded running .First.lib() for package 'elmerparam' as .onLoad/.onAttach were not found * DONE (elmerparam) make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src/R' make[2]: Leaving directory `/«PKGBUILDDIR»/elmerparam/src' Making install in test make[2]: Entering directory `/«PKGBUILDDIR»/elmerparam/test' make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam/test' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam/test' make[2]: Leaving directory `/«PKGBUILDDIR»/elmerparam/test' make[2]: Entering directory `/«PKGBUILDDIR»/elmerparam' make[3]: Entering directory `/«PKGBUILDDIR»/elmerparam' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/elmerparam' make[2]: Leaving directory `/«PKGBUILDDIR»/elmerparam' make[1]: Leaving directory `/«PKGBUILDDIR»/elmerparam' CONFIGURING ELMER MODULE hutiter configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for default compilation flags... optimized checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether we are using the Microsoft C compiler... no checking for e_wsfe in -lg2c... no checking for saxpy_ in -lblas... checking for in ... yes configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating examples/Makefile config.status: creating examples/ex1/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps BUILDING ELMER MODULE hutiter make[1]: Entering directory `/«PKGBUILDDIR»/hutiter' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»/hutiter' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/src' gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_C.o huti_aux_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_D.o huti_aux_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_S.o huti_aux_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_Z.o huti_aux_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_C.o huti_bicgstab_2_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_D.o huti_bicgstab_2_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_S.o huti_bicgstab_2_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_Z.o huti_bicgstab_2_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_C.o huti_bicgstab_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_D.o huti_bicgstab_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_S.o huti_bicgstab_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_Z.o huti_bicgstab_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_C.o huti_cg_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_D.o huti_cg_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_C.o huti_cgs_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_D.o huti_cgs_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_S.o huti_cg_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_S.o huti_cgs_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_Z.o huti_cgs_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_Z.o huti_cg_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_C.o huti_gmres_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_D.o huti_gmres_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_S.o huti_gmres_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_Z.o huti_gmres_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_C.o huti_qmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_D.o huti_qmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_S.o huti_qmr_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_Z.o huti_qmr_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_C.o huti_tfqmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_D.o huti_tfqmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_S.o huti_tfqmr_S.F90 cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_main.o -MD -MP -MF .deps/huti_main.Tpo -c -o huti_main.o huti_main.c mv -f .deps/huti_main.Tpo .deps/huti_main.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_C.o -MD -MP -MF .deps/huti_sfe_c_C.Tpo -c -o huti_sfe_c_C.o huti_sfe_c_C.c huti_sfe_c_C.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_C.Tpo .deps/huti_sfe_c_C.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_D.o -MD -MP -MF .deps/huti_sfe_c_D.Tpo -c -o huti_sfe_c_D.o huti_sfe_c_D.c huti_sfe_c_D.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_D.Tpo .deps/huti_sfe_c_D.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_S.o -MD -MP -MF .deps/huti_sfe_c_S.Tpo -c -o huti_sfe_c_S.o huti_sfe_c_S.c huti_sfe_c_S.c:124:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_S.Tpo .deps/huti_sfe_c_S.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_Z.o -MD -MP -MF .deps/huti_sfe_c_Z.Tpo -c -o huti_sfe_c_Z.o huti_sfe_c_Z.c huti_sfe_c_Z.c:125:3: warning: implicit declaration of function 'HUTI_Init' is invalid in C99 [-Wimplicit-function-declaration] HUTI_Init(); ^ 1 warning generated. mv -f .deps/huti_sfe_c_Z.Tpo .deps/huti_sfe_c_Z.Po gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_Z.o huti_tfqmr_Z.F90 rm -f libhuti.a ar cru libhuti.a huti_aux_C.o huti_aux_D.o huti_aux_S.o huti_aux_Z.o huti_bicgstab_2_C.o huti_bicgstab_2_D.o huti_bicgstab_2_S.o huti_bicgstab_2_Z.o huti_bicgstab_C.o huti_bicgstab_D.o huti_bicgstab_S.o huti_bicgstab_Z.o huti_cg_C.o huti_cg_D.o huti_cgs_C.o huti_cgs_D.o huti_cg_S.o huti_cgs_S.o huti_cgs_Z.o huti_cg_Z.o huti_gmres_C.o huti_gmres_D.o huti_gmres_S.o huti_gmres_Z.o huti_qmr_C.o huti_qmr_D.o huti_qmr_S.o huti_qmr_Z.o huti_tfqmr_C.o huti_tfqmr_D.o huti_tfqmr_S.o huti_main.o huti_sfe_c_C.o huti_sfe_c_D.o huti_sfe_c_S.o huti_sfe_c_Z.o huti_tfqmr_Z.o ranlib libhuti.a make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/src' Making all in include make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/include' Making all in examples make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/examples' Making all in ex1 make[4]: Entering directory `/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Entering directory `/«PKGBUILDDIR»/hutiter/examples' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples' make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples' make[3]: Entering directory `/«PKGBUILDDIR»/hutiter' make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter' make[2]: Leaving directory `/«PKGBUILDDIR»/hutiter' make[1]: Leaving directory `/«PKGBUILDDIR»/hutiter' INSTALLING ELMER MODULE hutiter make[1]: Entering directory `/«PKGBUILDDIR»/hutiter' Making install in src make[2]: Entering directory `/«PKGBUILDDIR»/hutiter/src' make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libhuti.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libhuti.a ) make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/src' make[2]: Leaving directory `/«PKGBUILDDIR»/hutiter/src' Making install in include make[2]: Entering directory `/«PKGBUILDDIR»/hutiter/include' make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/include' make[3]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /usr/bin/install -c -m 644 huti_defs.h huti_fdefs.h '/«PKGBUILDDIR»/debian/tmp/usr/include' make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/include' make[2]: Leaving directory `/«PKGBUILDDIR»/hutiter/include' Making install in examples make[2]: Entering directory `/«PKGBUILDDIR»/hutiter/examples' Making install in ex1 make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Entering directory `/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples/ex1' make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples/ex1' make[3]: Entering directory `/«PKGBUILDDIR»/hutiter/examples' make[4]: Entering directory `/«PKGBUILDDIR»/hutiter/examples' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples' make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples' make[2]: Leaving directory `/«PKGBUILDDIR»/hutiter/examples' make[2]: Entering directory `/«PKGBUILDDIR»/hutiter' make[3]: Entering directory `/«PKGBUILDDIR»/hutiter' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/hutiter' make[2]: Leaving directory `/«PKGBUILDDIR»/hutiter' make[1]: Leaving directory `/«PKGBUILDDIR»/hutiter' CONFIGURING ELMER MODULE meshgen2d configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for default compilation flags... optimized checking for answer to meaning of life... 42 checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for main in -lstdc++... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether to enable maintainer-specific portions of Makefiles... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE meshgen2d make[1]: Entering directory `/«PKGBUILDDIR»/meshgen2d' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»/meshgen2d' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src' Making all in include make[4]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src' g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGGridMesh.o -MD -MP -MF .deps/BGGridMesh.Tpo -c -o BGGridMesh.o BGGridMesh.cpp mv -f .deps/BGGridMesh.Tpo .deps/BGGridMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGTriangleMesh.o -MD -MP -MF .deps/BGTriangleMesh.Tpo -c -o BGTriangleMesh.o BGTriangleMesh.cpp mv -f .deps/BGTriangleMesh.Tpo .deps/BGTriangleMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGVertex.o -MD -MP -MF .deps/BGVertex.Tpo -c -o BGVertex.o BGVertex.cpp mv -f .deps/BGVertex.Tpo .deps/BGVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Body.o -MD -MP -MF .deps/Body.Tpo -c -o Body.o Body.cpp mv -f .deps/Body.Tpo .deps/Body.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryElement.o -MD -MP -MF .deps/BoundaryElement.Tpo -c -o BoundaryElement.o BoundaryElement.cpp mv -f .deps/BoundaryElement.Tpo .deps/BoundaryElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryLayer.o -MD -MP -MF .deps/BoundaryLayer.Tpo -c -o BoundaryLayer.o BoundaryLayer.cpp mv -f .deps/BoundaryLayer.Tpo .deps/BoundaryLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Connect.o -MD -MP -MF .deps/Connect.Tpo -c -o Connect.o Connect.cpp mv -f .deps/Connect.Tpo .deps/Connect.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Element.o -MD -MP -MF .deps/Element.Tpo -c -o Element.o Element.cpp mv -f .deps/Element.Tpo .deps/Element.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT GeometryEdge.o -MD -MP -MF .deps/GeometryEdge.Tpo -c -o GeometryEdge.o GeometryEdge.cpp mv -f .deps/GeometryEdge.Tpo .deps/GeometryEdge.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp mv -f .deps/main.Tpo .deps/main.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Mesh.o -MD -MP -MF .deps/Mesh.Tpo -c -o Mesh.o Mesh.cpp mv -f .deps/Mesh.Tpo .deps/Mesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshNode.o -MD -MP -MF .deps/MeshNode.Tpo -c -o MeshNode.o MeshNode.cpp mv -f .deps/MeshNode.Tpo .deps/MeshNode.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshParser.o -MD -MP -MF .deps/MeshParser.Tpo -c -o MeshParser.o MeshParser.cpp MeshParser.cpp:368:25: warning: '&&' within '||' [-Wlogical-op-parentheses] loop->direction != 1 && loop->direction != -1 ) return 0; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ MeshParser.cpp:368:25: note: place parentheses around the '&&' expression to silence this warning loop->direction != 1 && loop->direction != -1 ) return 0; ^ ( ) 1 warning generated. mv -f .deps/MeshParser.Tpo .deps/MeshParser.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o Node.cpp mv -f .deps/Node.Tpo .deps/Node.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT PQ.o -MD -MP -MF .deps/PQ.Tpo -c -o PQ.o PQ.cpp mv -f .deps/PQ.Tpo .deps/PQ.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadElement.o -MD -MP -MF .deps/QuadElement.Tpo -c -o QuadElement.o QuadElement.cpp mv -f .deps/QuadElement.Tpo .deps/QuadElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadLayer.o -MD -MP -MF .deps/QuadLayer.Tpo -c -o QuadLayer.o QuadLayer.cpp mv -f .deps/QuadLayer.Tpo .deps/QuadLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSMFVoronoiSegment.o -MD -MP -MF .deps/SSMFVoronoiSegment.Tpo -c -o SSMFVoronoiSegment.o SSMFVoronoiSegment.cpp mv -f .deps/SSMFVoronoiSegment.Tpo .deps/SSMFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSSFVoronoiSegment.o -MD -MP -MF .deps/SSSFVoronoiSegment.Tpo -c -o SSSFVoronoiSegment.o SSSFVoronoiSegment.cpp mv -f .deps/SSSFVoronoiSegment.Tpo .deps/SSSFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleElement.o -MD -MP -MF .deps/TriangleElement.Tpo -c -o TriangleElement.o TriangleElement.cpp mv -f .deps/TriangleElement.Tpo .deps/TriangleElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleNELayer.o -MD -MP -MF .deps/TriangleNELayer.Tpo -c -o TriangleNELayer.o TriangleNELayer.cpp mv -f .deps/TriangleNELayer.Tpo .deps/TriangleNELayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Vertex.o -MD -MP -MF .deps/Vertex.Tpo -c -o Vertex.o Vertex.cpp mv -f .deps/Vertex.Tpo .deps/Vertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiSegment.o -MD -MP -MF .deps/VoronoiSegment.Tpo -c -o VoronoiSegment.o VoronoiSegment.cpp mv -f .deps/VoronoiSegment.Tpo .deps/VoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiVertex.o -MD -MP -MF .deps/VoronoiVertex.Tpo -c -o VoronoiVertex.o VoronoiVertex.cpp mv -f .deps/VoronoiVertex.Tpo .deps/VoronoiVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VSVertex.o -MD -MP -MF .deps/VSVertex.Tpo -c -o VSVertex.o VSVertex.cpp mv -f .deps/VSVertex.Tpo .deps/VSVertex.Po g++ -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o ElmerMesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/«PKGBUILDDIR»/debian/tmp/usr/lib g++ -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o Mesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/«PKGBUILDDIR»/debian/tmp/usr/lib make[4]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src' make[3]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src' make[3]: Entering directory `/«PKGBUILDDIR»/meshgen2d' make[3]: Leaving directory `/«PKGBUILDDIR»/meshgen2d' make[2]: Leaving directory `/«PKGBUILDDIR»/meshgen2d' make[1]: Leaving directory `/«PKGBUILDDIR»/meshgen2d' INSTALLING ELMER MODULE meshgen2d make[1]: Entering directory `/«PKGBUILDDIR»/meshgen2d' Making install in src make[2]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src' Making install in include make[3]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src/include' make[3]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src/include' make[3]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src' make[4]: Entering directory `/«PKGBUILDDIR»/meshgen2d/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c ElmerMesh2D Mesh2D '/«PKGBUILDDIR»/debian/tmp/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src' make[3]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src' make[2]: Leaving directory `/«PKGBUILDDIR»/meshgen2d/src' make[2]: Entering directory `/«PKGBUILDDIR»/meshgen2d' make[3]: Entering directory `/«PKGBUILDDIR»/meshgen2d' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/«PKGBUILDDIR»/meshgen2d' make[2]: Leaving directory `/«PKGBUILDDIR»/meshgen2d' make[1]: Leaving directory `/«PKGBUILDDIR»/meshgen2d' CONFIGURING ELMER MODULE fem configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure: WARNING: unrecognized options: --with-metis checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ftello... yes checking for fseeko... yes checking for answer to meaning of life... 42 checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for /lib/cpp... yes checking for C++ linker flags... -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7 -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -lgcc_s checking how to run the C preprocessor... /lib/cpp checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for Fortran char* mangling scheme... char_ptr checking if fortran implements CONTIGUOUS attribute... yes checking for fortran intrinsic etime... found checking for fortran intrinsic flush... found checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for mpi-directory... /usr checking for mpi-lib-directory... /usr/lib checking for mpi-inc-directory... /usr/include/mpi checking for mpi-library... checking for mpi-include... checking for compilation of an MPI program... seems ok checking for mpf90... no checking for mpxlf90... no checking for saxpy_ in -lblas... checking for in ... yes checking for cheev_ in -llapack... yes checking for huti_d_gmres_ in -lhuti... yes checking for eio_init_ in -leiof... yes checking for dseupd_ in -larpack... yes checking for pdneupd_ in -lparpack... yes checking for HYPRE_IJMatrixCreate in -lHYPRE_IJ_mv... yes checking for dmumps_ in -ldmumps_scotch... yes checking for umfpack_di_defaults in -lumfpack... yes checking for mtc_init in -lmatc... yes checking for main in -lm... yes checking for *.mod-file naming convention... modulename.mod checking for option to tell gfortran where to put *.mod-files... -J checking size of off_t... 8 ./configure: line 13084: 0: command not found defining FPICFLAG to be -fPIC defining CPICFLAG to be -fPIC defining CXXPICFLAG to be -fPIC defining SHLEXT to be so defining SHLLIB to be $(SHLEXT) defining SHLBIN to be defining SHLEXT_VER to be $(SHLEXT).$(version) defining SHLLIB_VER to be $(SHLLIB).$(version) defining SHLBIN_VER to be $(SHLBIN).$(version) defining SHLLINKEXT to be defining DLFCN_DIR to be defining SH_LD to be gfortran defining SH_LDFLAGS to be -shared defining SH_LINKING_TO_FLAGS to be -m64 -fPIC defining DL_LD to be $(SH_LD) defining DL_LDFLAGS to be $(SH_LDFLAGS) defining MKOCTFILE_DL_LDFLAGS to be defining SONAME_FLAGS to be defining NO_OCT_FILE_STRIP to be defining RLD_FLAG to be defining TEMPLATE_AR to be defining TEMPLATE_ARFLAGS to be defining library_path_var to be defining FCPPFLAGS to be -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS defining LIBSOLVER_DEPS to be -L/«PKGBUILDDIR»/debian/tmp/usr/lib defining OFF_KIND to be selected_int_kind(18) defining LONG_KIND to be configure: creating ./config.status config.status: creating tests/runtests config.status: creating src/elmerf90 config.status: creating src/elmerf90-nosh config.status: creating src/elmerld config.status: creating Makefile config.status: creating Makeconf config.status: creating src/Makefile config.status: creating src/view3d/Makefile config.status: creating src/viewaxis/Makefile config.status: creating src/binio/Makefile config.status: creating src/binio/kinds.f90 config.status: creating src/binio/test/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis ELMER build options: Version 6.1 Install prefix /usr CPPFLAGS -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi FCPPFLAGS -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS CFLAGS -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi CXXFLAGS -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -fPIC FCFLAGS -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include FFLAGS -O -m64 -fPIC -fPIC -I. -I/usr/include/mpi LDFLAGS -L. -L/usr/lib LIBS -L. -ldl -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib -lm SOLVER_LIBS -L. -ldl -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib -lm -larpack -lparpack -lHYPRE_Euclid -lHYPRE_parcsr_ls -lHYPRE_ParaSails -lHYPRE_IJ_mv -ldmumps_scotch -lumfpack -lamd -lhuti -lmatc -leiof -L. -ldl -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib -lm -llapack -lblas -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. -lgfortran -lm -lquadmath -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7 -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lgcc_s -lgcc_s Compilers: Fortran 90 compiler gfortran Fortran 77 compiler gfortran CC gcc C++ g++ CPP /lib/cpp Libs: BLAS -lblas LAPACK -llapack HYPRE -lHYPRE_Euclid -lHYPRE_parcsr_ls -lHYPRE_ParaSails -lHYPRE_IJ_mv MUMPS -ldmumps_scotch UMFPACK -lumfpack -lamd ARPACK -larpack PARPACK -lparpack HUTI -lhuti EIO -leiof MPI -L/usr/lib MPI: yes BUILDING ELMER MODULE fem make[1]: Entering directory `/«PKGBUILDDIR»/fem' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»/fem' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/fem/src' Making all in view3d make[4]: Entering directory `/«PKGBUILDDIR»/fem/src/view3d' gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT ViewFactors.o -MD -MP -MF .deps/ViewFactors.Tpo -c -o ViewFactors.o ViewFactors.c ViewFactors.c:486:4: warning: implicit declaration of function 'elm_4node_quad_shape_functions' is invalid in C99 [-Wimplicit-function-declaration] elm_4node_quad_shape_functions( ShapeFunctionMatrix4 ); ^ 1 warning generated. mv -f .deps/ViewFactors.Tpo .deps/ViewFactors.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT TestModel.o -MD -MP -MF .deps/TestModel.Tpo -c -o TestModel.o TestModel.c TestModel.c:254:29: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat] fprintf( stderr, "SIZE: %d\n", NElements*sizeof(Geometry_t) ); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %ld 1 warning generated. mv -f .deps/TestModel.Tpo .deps/TestModel.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT LineUtil.o -MD -MP -MF .deps/LineUtil.Tpo -c -o LineUtil.o LineUtil.c mv -f .deps/LineUtil.Tpo .deps/LineUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT TriangleUtil.o -MD -MP -MF .deps/TriangleUtil.Tpo -c -o TriangleUtil.o TriangleUtil.c mv -f .deps/TriangleUtil.Tpo .deps/TriangleUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiLinearUtil.o -MD -MP -MF .deps/BiLinearUtil.Tpo -c -o BiLinearUtil.o BiLinearUtil.c mv -f .deps/BiLinearUtil.Tpo .deps/BiLinearUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiQuadraticUtil.o -MD -MP -MF .deps/BiQuadraticUtil.Tpo -c -o BiQuadraticUtil.o BiQuadraticUtil.c mv -f .deps/BiQuadraticUtil.Tpo .deps/BiQuadraticUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT BiCubicUtil.o -MD -MP -MF .deps/BiCubicUtil.Tpo -c -o BiCubicUtil.o BiCubicUtil.c mv -f .deps/BiCubicUtil.Tpo .deps/BiCubicUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT RayTrace.o -MD -MP -MF .deps/RayTrace.Tpo -c -o RayTrace.o RayTrace.c RayTrace.c:78:24: warning: '&&' within '||' [-Wlogical-op-parentheses] BBox->XMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxXMin>Fx && BBox->XMin>Tx || BBox->XMaxXMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxYMin>Fy && BBox->YMin>Ty || BBox->YMaxYMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxZMin>Fz && BBox->ZMin>Tz || BBox->ZMaxZMaxR && FX+DX>R || FX<-R && FX+DX<-R || ~~~~~^~~~~~~~~~ ~~ RayTrace.c:686:18: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:686:38: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ~~ ~~~~~~^~~~~~~~~~~ RayTrace.c:686:38: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:687:18: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ~~~~~^~~~~~~~~~ RayTrace.c:687:18: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:687:38: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ~~ ~~~~~~^~~~~~~~~~~ RayTrace.c:687:38: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:688:18: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ~~~~~^~~~~~~~~~ RayTrace.c:688:18: note: place parentheses around the '&&' expression to silence this warning FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ^ ( ) RayTrace.c:688:38: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ~~ ~~~~~~^~~~~~~~~~~ RayTrace.c:688:38: note: place parentheses around the '&&' expression to silence this warning FZ>R && FZ+DZ>R || FZ<-R && FZ+DZ<-R ^ ( ) RayTrace.c:746:18: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ~~~~~^~~~~~~~~~ ~~ RayTrace.c:746:18: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:746:38: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>R && FX+DX>R || FX<-R && FX+DX<-R || ~~ ~~~~~~^~~~~~~~~~~ RayTrace.c:746:38: note: place parentheses around the '&&' expression to silence this warning FX>R && FX+DX>R || FX<-R && FX+DX<-R || ^ ( ) RayTrace.c:747:18: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ~~~~~^~~~~~~~~~ RayTrace.c:747:18: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:747:38: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>R && FY+DY>R || FY<-R && FY+DY<-R || ~~ ~~~~~~^~~~~~~~~~~ RayTrace.c:747:38: note: place parentheses around the '&&' expression to silence this warning FY>R && FY+DY>R || FY<-R && FY+DY<-R || ^ ( ) RayTrace.c:748:20: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ~~~~~~~^~~~~~~~~~~~ RayTrace.c:748:20: note: place parentheses around the '&&' expression to silence this warning FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ^ ( ) RayTrace.c:748:42: warning: '&&' within '||' [-Wlogical-op-parentheses] FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ~~ ~~~~~~^~~~~~~~~~~ RayTrace.c:748:42: note: place parentheses around the '&&' expression to silence this warning FZ<-CL && FZ+DZ<-CL || FZ>CL && FZ+DZ>CL ^ ( ) RayTrace.c:863:26: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ~~ RayTrace.c:863:26: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:863:62: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ RayTrace.c:863:62: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:864:26: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ RayTrace.c:864:26: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:864:62: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ~~ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ RayTrace.c:864:62: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:865:26: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ RayTrace.c:865:26: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) RayTrace.c:865:62: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ~~ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ RayTrace.c:865:62: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) RayTrace.c:965:26: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ~~ RayTrace.c:965:26: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:965:62: warning: '&&' within '||' [-Wlogical-op-parentheses] FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ~~ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ RayTrace.c:965:62: note: place parentheses around the '&&' expression to silence this warning FX>RQd->RMax && FX+DX>RQd->RMax || FX<-RQd->RMax && FX+DX<-RQd->RMax || ^ ( ) RayTrace.c:966:26: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ RayTrace.c:966:26: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:966:62: warning: '&&' within '||' [-Wlogical-op-parentheses] FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ~~ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ RayTrace.c:966:62: note: place parentheses around the '&&' expression to silence this warning FY>RQd->RMax && FY+DY>RQd->RMax || FY<-RQd->RMax && FY+DY<-RQd->RMax || ^ ( ) RayTrace.c:967:26: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ RayTrace.c:967:26: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) RayTrace.c:967:62: warning: '&&' within '||' [-Wlogical-op-parentheses] FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ~~ ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ RayTrace.c:967:62: note: place parentheses around the '&&' expression to silence this warning FZZMin && FZ+DZZMin || FZ> RQd->ZMax && FZ+DZ> RQd->ZMax ^ ( ) 30 warnings generated. mv -f .deps/RayTrace.Tpo .deps/RayTrace.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT VectorUtil.o -MD -MP -MF .deps/VectorUtil.Tpo -c -o VectorUtil.o VectorUtil.c mv -f .deps/VectorUtil.Tpo .deps/VectorUtil.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT LUDecomp.o -MD -MP -MF .deps/LUDecomp.Tpo -c -o LUDecomp.o LUDecomp.c mv -f .deps/LUDecomp.Tpo .deps/LUDecomp.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT 2d_4node.o -MD -MP -MF .deps/2d_4node.Tpo -c -o 2d_4node.o 2d_4node.c mv -f .deps/2d_4node.Tpo .deps/2d_4node.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT 16node_quad.o -MD -MP -MF .deps/16node_quad.Tpo -c -o 16node_quad.o 16node_quad.c mv -f .deps/16node_quad.Tpo .deps/16node_quad.Po gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT second.o -MD -MP -MF .deps/second.Tpo -c -o second.o second.c mv -f .deps/second.Tpo .deps/second.Po rm -f libview3d.a ar cru libview3d.a ViewFactors.o TestModel.o LineUtil.o TriangleUtil.o BiLinearUtil.o BiQuadraticUtil.o BiCubicUtil.o RayTrace.o VectorUtil.o LUDecomp.o 2d_4node.o 16node_quad.o second.o ranlib libview3d.a make[4]: Leaving directory `/«PKGBUILDDIR»/fem/src/view3d' Making all in viewaxis make[4]: Entering directory `/«PKGBUILDDIR»/fem/src/viewaxis' g++ -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -fPIC -MT viewfact.o -MD -MP -MF .deps/viewfact.Tpo -c -o viewfact.o viewfact.cpp mv -f .deps/viewfact.Tpo .deps/viewfact.Po rm -f libviewaxis.a ar cru libviewaxis.a viewfact.o ranlib libviewaxis.a make[4]: Leaving directory `/«PKGBUILDDIR»/fem/src/viewaxis' Making all in binio make[4]: Entering directory `/«PKGBUILDDIR»/fem/src/binio' Making all in test make[5]: Entering directory `/«PKGBUILDDIR»/fem/src/binio/test' make[5]: Nothing to be done for `all'. make[5]: Leaving directory `/«PKGBUILDDIR»/fem/src/binio/test' make[5]: Entering directory `/«PKGBUILDDIR»/fem/src/binio' gcc -DHAVE_CONFIG_H -I. -I../.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT binio.o -MD -MP -MF .deps/binio.Tpo -c -o binio.o binio.c mv -f .deps/binio.Tpo .deps/binio.Po gfortran -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include -c -o kinds.o kinds.f90 gfortran -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I. -Ibinio -I/usr/include/mpi -I/usr/include -c -o biniomod.o biniomod.f90 rm -f libbinio.a ar cru libbinio.a binio.o kinds.o biniomod.o ranlib libbinio.a make[5]: Leaving directory `/«PKGBUILDDIR»/fem/src/binio' make[4]: Leaving directory `/«PKGBUILDDIR»/fem/src/binio' make[4]: Entering directory `/«PKGBUILDDIR»/fem/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/usr/include/mpi -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -MT SC2Elmer.o -MD -MP -MF .deps/SC2Elmer.Tpo -c -o SC2Elmer.o SC2Elmer.c mv -f .deps/SC2Elmer.Tpo .deps/SC2Elmer.Po gcc -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -fPIC -I/usr/include -I/usr/include/mpi -L. -L/usr/lib -o SC2Elmer SC2Elmer.o -L. -ldl -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib -lm cp mpif_stub.h mpif /lib/cpp -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS NavierStokes.src > NavierStokes.f90 NavierStokes.src:853:21: warning: missing terminating ' character ! (rho*u',grad(q)) ^ NavierStokes.src:861:24: warning: missing terminating ' character ! -(rho*u'*grad(u),w) ^ NavierStokes.src:870:23: warning: missing terminating ' character ! (rho*u',u.grad(w)) ^ NavierStokes.src:880:25: warning: missing terminating ' character ! (rho*div(u'),div(w)) ^ 4 warnings generated. /lib/cpp -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS DefUtils.src > DefUtils.f90 /lib/cpp -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS PElementMaps.src > PElementMaps.f90 /lib/cpp -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS Types.src > Types.f90 /lib/cpp -I/«PKGBUILDDIR»/debian/tmp/usr/include -DCONTIG=",CONTIGUOUS" -P -traditional-cpp -I. -I/usr/include -DFULL_INDUCTION -DUSE_ARPACK -I/usr/include/mpi -DHAVE_MUMPS iso_varying_string.src > iso_varying_string.f90 iso_varying_string.src:37:33: warning: missing terminating ' character ! Thanks : Lawrie Schonfelder's iso_varying_string module provided me ^ iso_varying_string.src:1363:14: error: empty character constant string = '' ^ iso_varying_string.src:1415:14: error: empty character constant string = '' ^ iso_varying_string.src:1490:14: error: empty character constant string = '' ^ iso_varying_string.src:1498:40: error: empty character constant if(PRESENT(separator)) separator = '' ^ iso_varying_string.src:1571:14: error: empty character constant string = '' ^ iso_varying_string.src:1579:40: error: empty character constant if(PRESENT(separator)) separator = '' ^ iso_varying_string.src:2348:18: error: empty character constant rep_string = '' ^ iso_varying_string.src:2442:43: error: empty character constant if(PRESENT(separator)) separator = '' ^ iso_varying_string.src:2443:17: error: empty character constant string = '' ^ 1 warning and 9 errors generated. make[4]: *** [iso_varying_string.f90] Error 1 make[4]: Leaving directory `/«PKGBUILDDIR»/fem/src' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/fem/src' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/«PKGBUILDDIR»/fem' make[1]: *** [all] Error 2 make[1]: Leaving directory `/«PKGBUILDDIR»/fem' make: *** [stamp-build] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-0053 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 124672 Build-Time: 65 Distribution: unstable Fail-Stage: build Install-Time: 39 Job: elmerfem_6.1.0.svn.5396.dfsg-5.2 Package: elmerfem Package-Time: 127 Source-Version: 6.1.0.svn.5396.dfsg-5.2 Space: 124672 Status: attempted Version: 6.1.0.svn.5396.dfsg-5.2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-0053 Build needed 00:02:07, 124672k disc space DC-Status: Failed 127.836146s DC-Time-Estimation: 127.836146 versus expected 3901 (r/m: 29.5156258387201 ; m: 127.836146)