DC-Build-Header: librg-blast-parser-perl 0.02-2 / Sat Jun 23 16:33:49 +0000 2012 DC-Task: logfile:/tmp/librg-blast-parser-perl_0.02-2_unstable_clang.log version:0.02-2 chroot:unstable modes:binary-only:clang source:librg-blast-parser-perl architecture:any esttime:95 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang librg-blast-parser-perl_0.02-2' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-86-235.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librg-blast-parser-perl 0.02-2 (amd64) 23 Jun 2012 16:33 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librg-blast-parser-perl Version: 0.02-2 Source Version: 0.02-2 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-Vy_wLt/librg-blast-parser-perl-0.02' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-Vy_wLt' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-59fc1461-b0cc-461e-9a7c-882faeec158d' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:7 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:8 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:9 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:10 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:11 http://localhost unstable/main 2012-06-23-1414.42.pdiff [10.6 kB] Get:12 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:13 http://localhost unstable/main amd64 2012-06-23-1414.42.pdiff [11.3 kB] Get:14 http://localhost unstable/main 2012-06-23-1414.42.pdiff [10.6 kB] Get:15 http://localhost unstable/main 2012-06-23-1414.42.pdiff [696 B] Get:16 http://localhost unstable/main amd64 2012-06-23-1414.42.pdiff [11.3 kB] Get:17 http://localhost unstable/main 2012-06-23-1414.42.pdiff [696 B] Fetched 296 kB in 7s (40.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-passwd bsdutils libblkid1 libmount1 libuuid1 mount util-linux 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1300 kB of archives. After this operation, 308 kB disk space will be freed. Get:1 http://localhost/debian/ unstable/main mount amd64 2.20.1-5.1 [213 kB] Get:2 http://localhost/debian/ unstable/main util-linux amd64 2.20.1-5.1 [659 kB] Get:3 http://localhost/debian/ unstable/main base-passwd amd64 3.5.26 [46.3 kB] Get:4 http://localhost/debian/ unstable/main bsdutils amd64 1:2.20.1-5.1 [85.3 kB] Get:5 http://localhost/debian/ unstable/main libuuid1 amd64 2.20.1-5.1 [56.9 kB] Get:6 http://localhost/debian/ unstable/main libblkid1 amd64 2.20.1-5.1 [120 kB] Get:7 http://localhost/debian/ unstable/main libmount1 amd64 2.20.1-5.1 [120 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1300 kB in 0s (13.7 MB/s) (Reading database ... 11730 files and directories currently installed.) Preparing to replace mount 2.20.1-5 (using .../mount_2.20.1-5.1_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace util-linux 2.20.1-5 (using .../util-linux_2.20.1-5.1_amd64.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace base-passwd 3.5.25 (using .../base-passwd_3.5.26_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.26) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace bsdutils 1:2.20.1-5 (using .../bsdutils_1%3a2.20.1-5.1_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace libuuid1:amd64 2.20.1-5 (using .../libuuid1_2.20.1-5.1_amd64.deb) ... Unpacking replacement libuuid1:amd64 ... Setting up libuuid1:amd64 (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace libblkid1:amd64 2.20.1-5 (using .../libblkid1_2.20.1-5.1_amd64.deb) ... Unpacking replacement libblkid1:amd64 ... Setting up libblkid1:amd64 (2.20.1-5.1) ... (Reading database ... 11730 files and directories currently installed.) Preparing to replace libmount1 2.20.1-5 (using .../libmount1_2.20.1-5.1_amd64.deb) ... Unpacking replacement libmount1 ... Setting up libmount1 (2.20.1-5.1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librg-blast-parser-perl/trunk/ Need to get 18.6 kB of source archives. Get:1 http://localhost/debian/ unstable/main librg-blast-parser-perl 0.02-2 (dsc) [2215 B] Get:2 http://localhost/debian/ unstable/main librg-blast-parser-perl 0.02-2 (tar) [11.6 kB] Get:3 http://localhost/debian/ unstable/main librg-blast-parser-perl 0.02-2 (diff) [4852 B] Fetched 18.6 kB in 0s (91.7 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (29.8 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-jMCcSm/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.0-2), perl Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.0-2), perl dpkg-deb: building package `sbuild-build-depends-librg-blast-parser-perl-dummy' in `/«BUILDDIR»/resolver-YOla8B/apt_archive/sbuild-build-depends-librg-blast-parser-perl-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librg-blast-parser-perl build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3 libextutils-xspp-perl libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 librostlab-blast0 librostlab-blast0-dev librostlab3 librostlab3-dev libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff librostlab-blast-doc librostlab-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3 libextutils-xspp-perl libgettextpo0 libglib2.0-0 libmagic1 libpcre3 libpipeline1 librostlab-blast0 librostlab-blast0-dev librostlab3 librostlab3-dev libunistring0 libxml2 man-db po-debconf sbuild-build-depends-librg-blast-parser-perl-dummy 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB/10.4 MB of archives. After this operation, 28.7 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:2 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:3 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:4 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:5 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:6 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:7 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:8 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:9 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:10 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:11 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:12 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:13 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:14 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:15 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:16 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:17 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:18 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:19 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:20 http://localhost/debian/ unstable/main libextutils-xspp-perl all 0.1602-3 [193 kB] Get:21 http://localhost/debian/ unstable/main librostlab-blast0 amd64 1.0.0-2 [114 kB] Get:22 http://localhost/debian/ unstable/main librostlab3 amd64 1.0.20-1 [5734 B] Get:23 http://localhost/debian/ unstable/main librostlab3-dev amd64 1.0.20-1 [13.5 kB] Get:24 http://localhost/debian/ unstable/main librostlab-blast0-dev amd64 1.0.0-2 [133 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.4 MB in 0s (11.3 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.3-1_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0:amd64. Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-8_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.2-1_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ... Selecting previously unselected package libextutils-xspp-perl. Unpacking libextutils-xspp-perl (from .../libextutils-xspp-perl_0.1602-3_all.deb) ... Selecting previously unselected package librostlab-blast0. Unpacking librostlab-blast0 (from .../librostlab-blast0_1.0.0-2_amd64.deb) ... Selecting previously unselected package librostlab3. Unpacking librostlab3 (from .../librostlab3_1.0.20-1_amd64.deb) ... Selecting previously unselected package librostlab3-dev. Unpacking librostlab3-dev (from .../librostlab3-dev_1.0.20-1_amd64.deb) ... Selecting previously unselected package librostlab-blast0-dev. Unpacking librostlab-blast0-dev (from .../librostlab-blast0-dev_1.0.0-2_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-librg-blast-parser-perl-dummy. Unpacking sbuild-build-depends-librg-blast-parser-perl-dummy (from .../sbuild-build-depends-librg-blast-parser-perl-dummy.deb) ... Setting up libpipeline1:amd64 (1.2.1-1) ... Setting up libasprintf0c2:amd64 (0.18.1.1-9) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.5-1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up libextutils-xspp-perl (0.1602-3) ... Setting up librostlab-blast0 (1.0.0-2) ... Setting up librostlab3 (1.0.20-1) ... Setting up librostlab3-dev (1.0.20-1) ... Setting up librostlab-blast0-dev (1.0.0-2) ... Setting up sbuild-build-depends-librg-blast-parser-perl-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: apt_0.9.7 base-files_6.11 base-passwd_3.5.26 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-3 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5.1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libextutils-xspp-perl_0.1602-3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libitm1_4.7.1-1 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5.1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 librostlab-blast0_1.0.0-2 librostlab-blast0-dev_1.0.0-2 librostlab3_1.0.20-1 librostlab3-dev_1.0.20-1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.1 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.1 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librg-blast-parser-perl-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Wed Apr 11 07:21:36 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librg-blast-parser-perl_0.02-2.dsc dpkg-source: info: extracting librg-blast-parser-perl in librg-blast-parser-perl-0.02 dpkg-source: info: unpacking librg-blast-parser-perl_0.02.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.02-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-59fc1461-b0cc-461e-9a7c-882faeec158d SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package librg-blast-parser-perl dpkg-buildpackage: source version 0.02-2 dpkg-buildpackage: source changed by Laszlo Kajan dpkg-source --before-build librg-blast-parser-perl-0.02 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh --parallel clean dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel rm -f debian/librg-blast-parser-perl.substvars rm -f debian/librg-blast-parser-perl.*.debhelper rm -rf debian/librg-blast-parser-perl/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build-arch dh --parallel build-arch dh_testdir -a -O--parallel dh_auto_configure -a -O--parallel perl Makefile.PL INSTALLDIRS=vendor create_packlist=0 Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. 'CREATE_PACKLIST' is not a known MakeMaker parameter name. Writing Makefile for RG::Blast::Parser Writing MYMETA.yml dh_auto_build -a -O--parallel make -j1 make[1]: Entering directory `/«PKGBUILDDIR»' cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) /usr/bin/perl /usr/share/perl/5.14/ExtUtils/xsubpp -C++ -hiertype -noprototypes -typemap /usr/share/perl/5.14/ExtUtils/typemap -typemap perlobject.map -typemap typemap Parser.xs > Parser.xsc && mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -DVERSION=\"0.02\" -DXS_VERSION=\"0.02\" -fPIC "-I/usr/lib/perl/5.14/CORE" Parser.c clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from rostlab/blast-parser-parser.h:76: In file included from /usr/include/rostlab/blast-parser-location.h:44: rostlab/blast-parser-position.h:135:42: warning: '&&' within '||' [-Wlogical-op-parentheses] || pos1.filename && pos2.filename && *pos1.filename == *pos2.filename) ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rostlab/blast-parser-position.h:135:42: note: place parentheses around the '&&' expression to silence this warning || pos1.filename && pos2.filename && *pos1.filename == *pos2.filename) ^ ( ) In file included from Parser.xs:15: /usr/include/rostlab/blast-parser-driver.h:61:12: error: expected a class or namespace friend YY_DECL_FRIEND; ^~~~~~~~~~~~~~ /usr/include/rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ~~~~~~~~~~~~~~~~~~~~~~~~^ /usr/include/rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ /usr/include/rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ Parser.c:251:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_idx", 11, newSVuv( r_i->oneline_idx ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:252:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_cnt", 11, newSVuv( r_i->oneline_cnt ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:253:4: warning: expression result unused [-Wunused-value] hv_store(round, "hit_idx", 7, newSVuv( r_i->hit_idx ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:254:4: warning: expression result unused [-Wunused-value] hv_store(round, "hit_cnt", 7, newSVuv( r_i-> hit_cnt ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:255:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_new_idx", 15, r_i->oneline_new_idx != rostlab::blast::round::noidx ? newSVuv( r_i->oneline_new_idx ) : &PL_sv_undef, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:256:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_new_cnt", 15, newSVuv( r_i->oneline_new_cnt ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:262:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "name", 4, newSVpvn( o_i->name.c_str(), o_i->name.size() ), h_name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:263:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "desc", 4, o_i->desc.empty() ? &PL_sv_undef : newSVpvn( o_i->desc.c_str(), o_i->desc.size() ), h_desc); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:264:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "bit_score", 9, newSVnv( o_i->bit_score ), h_bit_score); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:265:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "e_value", 7, newSVnv( o_i->e_value ), h_e_value); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:276:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "bit_score", 9, newSVnv( hsp_i->bit_score ), h_bit_score); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:277:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "raw_score", 9, newSVuv( hsp_i->raw_score ), h_raw_score); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:278:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "e_value", 7, newSVnv( hsp_i->e_value ), h_e_value); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:279:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "method", 6, newSVpvn_share( method.c_str(), method.size(), 0), h_ECompoAdjustModes[hsp_i->method]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:280:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "identities", 10, newSVuv( hsp_i->identities ), h_identities); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:281:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "positives", 9, newSVuv( hsp_i->positives ), h_positives); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:282:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "gaps", 4, newSVuv( hsp_i->gaps ), h_gaps); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:283:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_strand", 8, hsp_i->q_strand.empty() ? &PL_sv_undef : newSVpvn_share( hsp_i->q_strand.c_str(), hsp_i->q_strand.length(), 0), h_q_strand); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:284:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_strand", 8, hsp_i->s_strand.empty() ? &PL_sv_undef : newSVpvn_share( hsp_i->s_strand.c_str(), hsp_i->s_strand.length(), 0), h_s_strand); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:285:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_frame", 7, hsp_i->q_frame == 32 ? &PL_sv_undef : newSViv( hsp_i->q_frame ), h_q_frame); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:286:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_frame", 7, hsp_i->s_frame == 32 ? &PL_sv_undef : newSViv( hsp_i->s_frame ), h_s_frame); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:287:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_start", 7, newSVuv( hsp_i->q_start ), h_q_start); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:288:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_ali", 5, newSVpvn( hsp_i->q_ali.c_str(), hsp_i->q_ali.size() ), h_q_ali); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:289:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_end", 5, newSVuv( hsp_i->q_end ), h_q_end); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:290:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "match_line", 10, newSVpvn( hsp_i->match_line.c_str(), hsp_i->match_line.size() ), h_match_line); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:291:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_start", 7, newSVuv( hsp_i->s_start ), h_s_start); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:292:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_ali", 5, newSVpvn( hsp_i->s_ali.c_str(), hsp_i->s_ali.size() ), h_s_ali); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:293:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_end", 5, newSVuv( hsp_i->s_end ), h_s_end); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:298:4: warning: expression result unused [-Wunused-value] hv_store(hit, "name", 4, newSVpvn( h_i->name.c_str(), h_i->name.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:299:4: warning: expression result unused [-Wunused-value] hv_store(hit, "desc", 4, h_i->desc.empty() ? &PL_sv_undef : newSVpvn( h_i->desc.c_str(), h_i->desc.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:300:4: warning: expression result unused [-Wunused-value] hv_store(hit, "length", 6, newSVuv( h_i->length ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:301:4: warning: expression result unused [-Wunused-value] hv_store(hit, "hsps", 4, newRV_inc((SV *)hsps), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:306:3: warning: expression result unused [-Wunused-value] hv_store(res, "blast_version", 13, newSVpvn( RETVAL.blast_version.c_str(), RETVAL.blast_version.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:307:3: warning: expression result unused [-Wunused-value] hv_store(res, "references", 10, newRV_inc((SV *)references), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:308:3: warning: expression result unused [-Wunused-value] hv_store(res, "rounds", 6, newRV_inc((SV *)rounds), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:309:3: warning: expression result unused [-Wunused-value] hv_store(res, "q_name", 6, newSVpvn( RETVAL.q_name.c_str(), RETVAL.q_name.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:310:3: warning: expression result unused [-Wunused-value] hv_store(res, "q_desc", 6, RETVAL.q_desc.empty() ? &PL_sv_undef : newSVpvn( RETVAL.q_desc.c_str(), RETVAL.q_desc.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:311:3: warning: expression result unused [-Wunused-value] hv_store(res, "q_length", 8, newSVuv( RETVAL.q_length ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:312:3: warning: expression result unused [-Wunused-value] hv_store(res, "db_name", 7, newSVpvn( RETVAL.db_name.c_str(), RETVAL.db_name.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:313:3: warning: expression result unused [-Wunused-value] hv_store(res, "db_nseq", 7, newSVuv( RETVAL.db_nseq ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:314:3: warning: expression result unused [-Wunused-value] hv_store(res, "db_nletter", 10, newSVuv( RETVAL.db_nletter ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:315:3: warning: expression result unused [-Wunused-value] hv_store(res, "onelines", 8, newRV_inc((SV *)onelines), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:316:3: warning: expression result unused [-Wunused-value] hv_store(res, "converged", 9, newSViv( RETVAL.converged ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:317:3: warning: expression result unused [-Wunused-value] hv_store(res, "hits", 4, newRV_inc((SV *)hits), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:318:3: warning: expression result unused [-Wunused-value] hv_store(res, "tail", 4, newSVpvn( RETVAL.tail.c_str(), RETVAL.tail.size() ), 0 ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:471:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_idx", 11, newSVuv( r_i->oneline_idx ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:472:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_cnt", 11, newSVuv( r_i->oneline_cnt ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:473:4: warning: expression result unused [-Wunused-value] hv_store(round, "hit_idx", 7, newSVuv( r_i->hit_idx ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:474:4: warning: expression result unused [-Wunused-value] hv_store(round, "hit_cnt", 7, newSVuv( r_i-> hit_cnt ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:475:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_new_idx", 15, r_i->oneline_new_idx != rostlab::blast::round::noidx ? newSVuv( r_i->oneline_new_idx ) : &PL_sv_undef, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:476:4: warning: expression result unused [-Wunused-value] hv_store(round, "oneline_new_cnt", 15, newSVuv( r_i->oneline_new_cnt ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:482:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "name", 4, newSVpvn( o_i->name.c_str(), o_i->name.size() ), h_name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:483:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "desc", 4, o_i->desc.empty() ? &PL_sv_undef : newSVpvn( o_i->desc.c_str(), o_i->desc.size() ), h_desc); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:484:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "bit_score", 9, newSVnv( o_i->bit_score ), h_bit_score); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:485:4: warning: expression result unused [-Wunused-value] hv_store(oneline, "e_value", 7, newSVnv( o_i->e_value ), h_e_value); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:496:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "bit_score", 9, newSVnv( hsp_i->bit_score ), h_bit_score); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:497:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "raw_score", 9, newSVuv( hsp_i->raw_score ), h_raw_score); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:498:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "e_value", 7, newSVnv( hsp_i->e_value ), h_e_value); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:499:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "method", 6, newSVpvn_share( method.c_str(), method.size(), 0), h_ECompoAdjustModes[hsp_i->method]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:500:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "identities", 10, newSVuv( hsp_i->identities ), h_identities); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:501:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "positives", 9, newSVuv( hsp_i->positives ), h_positives); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:502:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "gaps", 4, newSVuv( hsp_i->gaps ), h_gaps); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:503:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_strand", 8, hsp_i->q_strand.empty() ? &PL_sv_undef : newSVpvn_share( hsp_i->q_strand.c_str(), hsp_i->q_strand.length(), 0), h_q_strand); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:504:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_strand", 8, hsp_i->s_strand.empty() ? &PL_sv_undef : newSVpvn_share( hsp_i->s_strand.c_str(), hsp_i->s_strand.length(), 0), h_s_strand); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:505:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_frame", 7, hsp_i->q_frame == 32 ? &PL_sv_undef : newSViv( hsp_i->q_frame ), h_q_frame); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:506:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_frame", 7, hsp_i->s_frame == 32 ? &PL_sv_undef : newSViv( hsp_i->s_frame ), h_s_frame); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:507:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_start", 7, newSVuv( hsp_i->q_start ), h_q_start); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:508:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_ali", 5, newSVpvn( hsp_i->q_ali.c_str(), hsp_i->q_ali.size() ), h_q_ali); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:509:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "q_end", 5, newSVuv( hsp_i->q_end ), h_q_end); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:510:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "match_line", 10, newSVpvn( hsp_i->match_line.c_str(), hsp_i->match_line.size() ), h_match_line); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:511:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_start", 7, newSVuv( hsp_i->s_start ), h_s_start); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:512:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_ali", 5, newSVpvn( hsp_i->s_ali.c_str(), hsp_i->s_ali.size() ), h_s_ali); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:513:5: warning: expression result unused [-Wunused-value] hv_store(hsp, "s_end", 5, newSVuv( hsp_i->s_end ), h_s_end); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:518:4: warning: expression result unused [-Wunused-value] hv_store(hit, "name", 4, newSVpvn( h_i->name.c_str(), h_i->name.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:519:4: warning: expression result unused [-Wunused-value] hv_store(hit, "desc", 4, h_i->desc.empty() ? &PL_sv_undef : newSVpvn( h_i->desc.c_str(), h_i->desc.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:520:4: warning: expression result unused [-Wunused-value] hv_store(hit, "length", 6, newSVuv( h_i->length ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:521:4: warning: expression result unused [-Wunused-value] hv_store(hit, "hsps", 4, newRV_inc((SV *)hsps), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:526:3: warning: expression result unused [-Wunused-value] hv_store(res, "blast_version", 13, newSVpvn( RETVAL.blast_version.c_str(), RETVAL.blast_version.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:527:3: warning: expression result unused [-Wunused-value] hv_store(res, "references", 10, newRV_inc((SV *)references), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:528:3: warning: expression result unused [-Wunused-value] hv_store(res, "rounds", 6, newRV_inc((SV *)rounds), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:529:3: warning: expression result unused [-Wunused-value] hv_store(res, "q_name", 6, newSVpvn( RETVAL.q_name.c_str(), RETVAL.q_name.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:530:3: warning: expression result unused [-Wunused-value] hv_store(res, "q_desc", 6, RETVAL.q_desc.empty() ? &PL_sv_undef : newSVpvn( RETVAL.q_desc.c_str(), RETVAL.q_desc.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:531:3: warning: expression result unused [-Wunused-value] hv_store(res, "q_length", 8, newSVuv( RETVAL.q_length ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:532:3: warning: expression result unused [-Wunused-value] hv_store(res, "db_name", 7, newSVpvn( RETVAL.db_name.c_str(), RETVAL.db_name.size() ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:533:3: warning: expression result unused [-Wunused-value] hv_store(res, "db_nseq", 7, newSVuv( RETVAL.db_nseq ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:534:3: warning: expression result unused [-Wunused-value] hv_store(res, "db_nletter", 10, newSVuv( RETVAL.db_nletter ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:535:3: warning: expression result unused [-Wunused-value] hv_store(res, "onelines", 8, newRV_inc((SV *)onelines), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:536:3: warning: expression result unused [-Wunused-value] hv_store(res, "converged", 9, newSViv( RETVAL.converged ), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:537:3: warning: expression result unused [-Wunused-value] hv_store(res, "hits", 4, newRV_inc((SV *)hits), 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ Parser.c:538:3: warning: expression result unused [-Wunused-value] hv_store(res, "tail", 4, newSVpvn( RETVAL.tail.c_str(), RETVAL.tail.size() ), 0 ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/perl/5.14/CORE/hv.h:476:6: note: expanded from macro 'hv_store' ((SV**) hv_common_key_len((hv), (key), (klen), \ ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ /usr/include/rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ /usr/include/rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ /usr/include/rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ /usr/include/rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 91 warnings and 6 errors generated. make[1]: *** [Parser.o] Error 1 make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build: make -j1 returned exit code 2 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-1634 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 220 Build-Time: 3 Distribution: unstable Fail-Stage: build Install-Time: 7 Job: librg-blast-parser-perl_0.02-2 Package: librg-blast-parser-perl Package-Time: 38 Source-Version: 0.02-2 Space: 220 Status: attempted Version: 0.02-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-1634 Build needed 00:00:38, 220k disc space DC-Status: Failed 38.480795s DC-Time-Estimation: 38.480795 versus expected 95 (r/m: 1.46876396394617 ; m: 38.480795)