DC-Build-Header: nexus 4.2.1-svn1614-1 / Sat Jun 23 16:21:09 +0000 2012 DC-Task: logfile:/tmp/nexus_4.2.1-svn1614-1_unstable_clang.log version:4.2.1-svn1614-1 chroot:unstable modes:binary-only:clang source:nexus architecture:any esttime:263 DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang nexus_4.2.1-svn1614-1' sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-28-153-144.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ nexus 4.2.1-svn1614-1 (amd64) 23 Jun 2012 16:21 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: nexus Version: 4.2.1-svn1614-1 Source Version: 4.2.1-svn1614-1 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/nexus-dnq9Vb/nexus-4.2.1-svn1614' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/nexus-dnq9Vb' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-2376e3d6-8307-484b-8aa6-4fc7c7c43c0f' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [233 kB] Get:3 http://localhost unstable/main Sources/DiffIndex [7876 B] Get:4 http://localhost unstable/main amd64 Packages/DiffIndex [7876 B] Get:5 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:6 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:7 http://localhost unstable/main 2012-06-23-0814.36.pdiff [8967 B] Get:8 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:9 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Get:10 http://localhost unstable/main amd64 2012-06-23-0814.36.pdiff [6101 B] Get:11 http://localhost unstable/main 2012-06-23-0814.36.pdiff [1297 B] Fetched 274 kB in 4s (60.8 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... Need to get 4329 kB of source archives. Get:1 http://localhost/debian/ unstable/main nexus 4.2.1-svn1614-1 (dsc) [1314 B] Get:2 http://localhost/debian/ unstable/main nexus 4.2.1-svn1614-1 (tar) [4317 kB] Get:3 http://localhost/debian/ unstable/main nexus 4.2.1-svn1614-1 (diff) [10.9 kB] Fetched 4329 kB in 0s (10.1 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Hit http://localhost unstable/main Sources/DiffIndex Hit http://localhost unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends clang -t unstable Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-dev libffi5 libllvm3.1 Recommended packages: llvm-3.1-dev python The following NEW packages will be installed: clang libclang-common-dev libffi5 libllvm3.1 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:2 http://localhost/debian/ unstable/main libllvm3.1 amd64 3.1-1 [7276 kB] Get:3 http://localhost/debian/ unstable/main libclang-common-dev amd64 3.1-6 [84.0 kB] Get:4 http://localhost/debian/ unstable/main clang amd64 3.1-6 [5755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (30.3 MB/s) Selecting previously unselected package libffi5:amd64. (Reading database ... 11730 files and directories currently installed.) Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.1:amd64. Unpacking libllvm3.1:amd64 (from .../libllvm3.1_3.1-1_amd64.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.1-6_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.1-6_amd64.deb) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.1:amd64 (3.1-1) ... Setting up libclang-common-dev (3.1-6) ... Setting up clang (3.1-6) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSION=4.7 + cd /usr/bin + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-RNZINv/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/708 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11810 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), autoconf, automake, debhelper (>= 7), autotools-dev, libtool, libmxml-dev, libhdf5-serial-dev | libhdf5-dev, libhdf4g-dev, default-jdk | java2-sdk, python-all-dev, python-support, python-numpy, libxml2-dev Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), autoconf, automake, debhelper (>= 7), autotools-dev, libtool, libmxml-dev, libhdf5-serial-dev, libhdf4g-dev, default-jdk, python-all-dev, python-support, python-numpy, libxml2-dev dpkg-deb: building package `sbuild-build-depends-nexus-dummy' in `/«BUILDDIR»/resolver-MGX83S/apt_archive/sbuild-build-depends-nexus-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install nexus build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates ca-certificates-java debhelper default-jdk default-jre default-jre-headless file fontconfig fontconfig-config gettext gettext-base groff-base hdf5-helpers html2text intltool-debian java-common libasound2 libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblas3gf libcairo2 libcap2 libcroco3 libcups2 libdatrie1 libdb4.8 libdbus-1-3 libexpat1 libexpat1-dev libflac8 libfontconfig1 libfreetype6 libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgettextpo0 libgfortran3 libgif4 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhdf4-0 libhdf4-dev libhdf4g-dev libhdf5-7 libhdf5-dev libhdf5-serial-dev libice6 libjasper1 libjbig0 libjpeg8 libjpeg8-dev libjson0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapack3gf libmagic1 libmxml-dev libmxml1 libncursesw5 libnspr4 libnss3 libnss3-1d libogg0 libp11-kit0 libpango1.0-0 libpcre3 libpcsclite1 libpipeline1 libpixman-1-0 libpng12-0 libpulse0 libpython2.6 libpython2.7 libsm6 libsndfile1 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libthai-data libthai0 libtiff4 libtool libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxml2-dev libxrandr2 libxrender1 libxtst6 m4 man-db mime-support openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-support python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal shared-mime-info ttf-dejavu-core tzdata-java x11-common zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff equivs libasound2-plugins cups-common rng-tools krb5-doc krb5-user librsvg2-common gvfs libhdf4-doc hdf4-tools libhdf5-doc libjasper-runtime ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp pcscd pulseaudio libtool-doc automaken gfortran fortran95-compiler gcj less www-browser openjdk-6-demo openjdk-6-source visualvm icedtea-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg python-nose python2.6-doc binfmt-support python2.7-doc Recommended packages: curl wget lynx-cur autopoint dbus libglib2.0-data hicolor-icon-theme libgtk2.0-bin krb5-locales libgpm2 libssl-doc libltdl-dev tcpd xml-core libxt-dev ttf-dejavu-extra icedtea-netx icedtea-6-jre-cacao icedtea-6-jre-jamvm libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates ca-certificates-java debhelper default-jdk default-jre default-jre-headless file fontconfig fontconfig-config gettext gettext-base groff-base hdf5-helpers html2text intltool-debian java-common libasound2 libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblas3gf libcairo2 libcap2 libcroco3 libcups2 libdatrie1 libdb4.8 libdbus-1-3 libexpat1 libexpat1-dev libflac8 libfontconfig1 libfreetype6 libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgettextpo0 libgfortran3 libgif4 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhdf4-0 libhdf4-dev libhdf4g-dev libhdf5-7 libhdf5-dev libhdf5-serial-dev libice6 libjasper1 libjbig0 libjpeg8 libjpeg8-dev libjson0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapack3gf libmagic1 libmxml-dev libmxml1 libncursesw5 libnspr4 libnss3 libnss3-1d libogg0 libp11-kit0 libpango1.0-0 libpcre3 libpcsclite1 libpipeline1 libpixman-1-0 libpng12-0 libpulse0 libpython2.6 libpython2.7 libsm6 libsndfile1 libsqlite3-0 libssl-dev libssl1.0.0 libtasn1-3 libthai-data libthai0 libtiff4 libtool libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxml2-dev libxrandr2 libxrender1 libxtst6 m4 man-db mime-support openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-support python2.6 python2.6-dev python2.6-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-nexus-dummy shared-mime-info ttf-dejavu-core tzdata-java x11-common zlib1g-dev 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 139 MB/139 MB of archives. After this operation, 375 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libncursesw5 amd64 5.9-9 [141 kB] Get:2 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.1-1 [39.2 kB] Get:3 http://localhost/debian/ unstable/main libssl1.0.0 amd64 1.0.1c-3 [1211 kB] Get:4 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB] Get:5 http://localhost/debian/ unstable/main libcap2 amd64 1:2.22-1.1 [13.5 kB] Get:6 http://localhost/debian/ unstable/main libgpg-error0 amd64 1.10-3 [66.8 kB] Get:7 http://localhost/debian/ unstable/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:8 http://localhost/debian/ unstable/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:9 http://localhost/debian/ unstable/main libtasn1-3 amd64 2.13-2 [67.7 kB] Get:10 http://localhost/debian/ unstable/main libgnutls26 amd64 2.12.20-1 [616 kB] Get:11 http://localhost/debian/ unstable/main libkeyutils1 amd64 1.5.5-2 [9300 B] Get:12 http://localhost/debian/ unstable/main libkrb5support0 amd64 1.10.1+dfsg-1 [49.0 kB] Get:13 http://localhost/debian/ unstable/main libk5crypto3 amd64 1.10.1+dfsg-1 [112 kB] Get:14 http://localhost/debian/ unstable/main libkrb5-3 amd64 1.10.1+dfsg-1 [393 kB] Get:15 http://localhost/debian/ unstable/main libgssapi-krb5-2 amd64 1.10.1+dfsg-1 [147 kB] Get:16 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-1 [250 kB] Get:17 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.30-5 [242 kB] Get:18 http://localhost/debian/ unstable/main libsqlite3-0 amd64 3.7.13-1 [455 kB] Get:19 http://localhost/debian/ unstable/main libwrap0 amd64 7.6.q-23 [62.3 kB] Get:20 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB] Get:21 http://localhost/debian/ unstable/main libasound2 amd64 1.0.25-3 [461 kB] Get:22 http://localhost/debian/ unstable/main libasyncns0 amd64 0.8-4 [13.6 kB] Get:23 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.32.3-1 [2081 kB] Get:24 http://localhost/debian/ unstable/main libatk1.0-data all 2.4.0-2 [240 kB] Get:25 http://localhost/debian/ unstable/main libatk1.0-0 amd64 2.4.0-2 [95.1 kB] Get:26 http://localhost/debian/ unstable/main libexpat1 amd64 2.1.0-1 [141 kB] Get:27 http://localhost/debian/ unstable/main libfreetype6 amd64 2.4.9-1 [450 kB] Get:28 http://localhost/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB] Get:29 http://localhost/debian/ unstable/main fontconfig-config all 2.9.0-6 [232 kB] Get:30 http://localhost/debian/ unstable/main libfontconfig1 amd64 2.9.0-6 [299 kB] Get:31 http://localhost/debian/ unstable/main libpixman-1-0 amd64 0.26.0-2 [427 kB] Get:32 http://localhost/debian/ unstable/main libpng12-0 amd64 1.2.49-1 [190 kB] Get:33 http://localhost/debian/ unstable/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:34 http://localhost/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:35 http://localhost/debian/ unstable/main libxcb1 amd64 1.8.1-1 [50.0 kB] Get:36 http://localhost/debian/ unstable/main libx11-data all 2:1.5.0-1 [189 kB] Get:37 http://localhost/debian/ unstable/main libx11-6 amd64 2:1.5.0-1 [901 kB] Get:38 http://localhost/debian/ unstable/main libxcb-render0 amd64 1.8.1-1 [18.4 kB] Get:39 http://localhost/debian/ unstable/main libxcb-shm0 amd64 1.8.1-1 [10.1 kB] Get:40 http://localhost/debian/ unstable/main libxrender1 amd64 1:0.9.7-1 [32.2 kB] Get:41 http://localhost/debian/ unstable/main libcairo2 amd64 1.12.2-2 [912 kB] Get:42 http://localhost/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB] Get:43 http://localhost/debian/ unstable/main libjasper1 amd64 1.900.1-13 [159 kB] Get:44 http://localhost/debian/ unstable/main libjbig0 amd64 2.0-2 [32.2 kB] Get:45 http://localhost/debian/ unstable/main libtiff4 amd64 3.9.6-5 [201 kB] Get:46 http://localhost/debian/ unstable/main libgdk-pixbuf2.0-common all 2.26.1-1 [497 kB] Get:47 http://localhost/debian/ unstable/main libgdk-pixbuf2.0-0 amd64 2.26.1-1 [207 kB] Get:48 http://localhost/debian/ unstable/main libgtk2.0-common all 2.24.10-1 [6879 kB] Get:49 http://localhost/debian/ unstable/main libavahi-common-data amd64 0.6.31-1 [134 kB] Get:50 http://localhost/debian/ unstable/main libavahi-common3 amd64 0.6.31-1 [54.3 kB] Get:51 http://localhost/debian/ unstable/main libdbus-1-3 amd64 1.6.0-1 [171 kB] Get:52 http://localhost/debian/ unstable/main libavahi-client3 amd64 0.6.31-1 [59.1 kB] Get:53 http://localhost/debian/ unstable/main libcups2 amd64 1.5.3-2 [255 kB] Get:54 http://localhost/debian/ unstable/main libthai-data all 0.1.18-1 [205 kB] Get:55 http://localhost/debian/ unstable/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:56 http://localhost/debian/ unstable/main libthai0 amd64 0.1.18-1 [45.0 kB] Get:57 http://localhost/debian/ unstable/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:58 http://localhost/debian/ unstable/main fontconfig amd64 2.9.0-6 [349 kB] Get:59 http://localhost/debian/ unstable/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:60 http://localhost/debian/ unstable/main libxcomposite1 amd64 1:0.4.3-2 [16.6 kB] Get:61 http://localhost/debian/ unstable/main libxfixes3 amd64 1:5.0-4 [21.5 kB] Get:62 http://localhost/debian/ unstable/main libxcursor1 amd64 1:1.1.13-1 [26.9 kB] Get:63 http://localhost/debian/ unstable/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:64 http://localhost/debian/ unstable/main libxext6 amd64 2:1.3.1-2 [55.3 kB] Get:65 http://localhost/debian/ unstable/main libxi6 amd64 2:1.6.1-1 [75.0 kB] Get:66 http://localhost/debian/ unstable/main libxinerama1 amd64 2:1.1.2-1 [16.8 kB] Get:67 http://localhost/debian/ unstable/main libxrandr2 amd64 2:1.3.2-2 [33.5 kB] Get:68 http://localhost/debian/ unstable/main shared-mime-info amd64 1.0-1 [1066 kB] Get:69 http://localhost/debian/ unstable/main libgtk2.0-0 amd64 2.24.10-1 [2730 kB] Get:70 http://localhost/debian/ unstable/main libatk-wrapper-java all 0.30.4-2 [30.8 kB] Get:71 http://localhost/debian/ unstable/main libatk-wrapper-java-jni amd64 0.30.4-2 [31.6 kB] Get:72 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.5-1 [151 kB] Get:73 http://localhost/debian/ unstable/main libogg0 amd64 1.3.0-4 [20.6 kB] Get:74 http://localhost/debian/ unstable/main libflac8 amd64 1.2.1-6 [154 kB] Get:75 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:76 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-9 [145 kB] Get:77 http://localhost/debian/ unstable/main libgfortran3 amd64 4.7.1-1 [352 kB] Get:78 http://localhost/debian/ unstable/main x11-common all 1:7.6+13 [278 kB] Get:79 http://localhost/debian/ unstable/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:80 http://localhost/debian/ unstable/main libnspr4 amd64 2:4.9.1-1 [140 kB] Get:81 http://localhost/debian/ unstable/main libnss3 amd64 2:3.13.5-1 [1888 kB] Get:82 http://localhost/debian/ unstable/main libpcsclite1 amd64 1.8.3-3 [56.5 kB] Get:83 http://localhost/debian/ unstable/main libjson0 amd64 0.9-1.1 [19.4 kB] Get:84 http://localhost/debian/ unstable/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:85 http://localhost/debian/ unstable/main libvorbis0a amd64 1.3.2-1.3 [109 kB] Get:86 http://localhost/debian/ unstable/main libvorbisenc2 amd64 1.3.2-1.3 [143 kB] Get:87 http://localhost/debian/ unstable/main libsndfile1 amd64 1.0.25-5 [240 kB] Get:88 http://localhost/debian/ unstable/main libx11-xcb1 amd64 2:1.5.0-1 [139 kB] Get:89 http://localhost/debian/ unstable/main libxtst6 amd64 2:1.2.1-1 [26.6 kB] Get:90 http://localhost/debian/ unstable/main libpulse0 amd64 2.0-3 [305 kB] Get:91 http://localhost/debian/ unstable/main openjdk-6-jre-lib all 6b24-1.11.1-6 [6132 kB] Get:92 http://localhost/debian/ unstable/main openssl amd64 1.0.1c-3 [697 kB] Get:93 http://localhost/debian/ unstable/main ca-certificates all 20120212 [177 kB] Get:94 http://localhost/debian/ unstable/main java-common all 0.47 [66.1 kB] Get:95 http://localhost/debian/ unstable/main default-jre-headless amd64 1:1.6-47 [8112 B] Get:96 http://localhost/debian/ unstable/main libnss3-1d amd64 2:3.13.5-1 [21.6 kB] Get:97 http://localhost/debian/ unstable/main ca-certificates-java all 20120608 [14.2 kB] Get:98 http://localhost/debian/ unstable/main tzdata-java all 2012c-1 [150 kB] Get:99 http://localhost/debian/ unstable/main openjdk-6-jre-headless amd64 6b24-1.11.1-6 [25.4 MB] Get:100 http://localhost/debian/ unstable/main libdb4.8 amd64 4.8.30-11 [694 kB] Get:101 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.3 [209 kB] Get:102 http://localhost/debian/ unstable/main groff-base amd64 1.21-8 [1152 kB] Get:103 http://localhost/debian/ unstable/main man-db amd64 2.6.2-1 [1061 kB] Get:104 http://localhost/debian/ unstable/main file amd64 5.11-1 [53.2 kB] Get:105 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-9 [154 kB] Get:106 http://localhost/debian/ unstable/main m4 amd64 1.4.16-3 [260 kB] Get:107 http://localhost/debian/ unstable/main mime-support all 3.52-1 [35.5 kB] Get:108 http://localhost/debian/ unstable/main python2.7-minimal amd64 2.7.3-1 [1770 kB] Get:109 http://localhost/debian/ unstable/main python2.7 amd64 2.7.3-1 [2726 kB] Get:110 http://localhost/debian/ unstable/main python-minimal all 2.7.3~rc2-1 [40.4 kB] Get:111 http://localhost/debian/ unstable/main python all 2.7.3~rc2-1 [179 kB] Get:112 http://localhost/debian/ unstable/main python-support all 1.0.14 [33.5 kB] Get:113 http://localhost/debian/ unstable/main python2.6-minimal amd64 2.6.7-4 [1524 kB] Get:114 http://localhost/debian/ unstable/main python2.6 amd64 2.6.7-4 [2483 kB] Get:115 http://localhost/debian/ unstable/main autoconf all 2.69-1 [589 kB] Get:116 http://localhost/debian/ unstable/main autotools-dev all 20120608.1 [73.0 kB] Get:117 http://localhost/debian/ unstable/main automake all 1:1.11.5-2 [606 kB] Get:118 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:119 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-9 [1975 kB] Get:120 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:121 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:122 http://localhost/debian/ unstable/main debhelper all 9.20120608 [700 kB] Get:123 http://localhost/debian/ unstable/main libgif4 amd64 4.1.6-9.1 [42.1 kB] Get:124 http://localhost/debian/ unstable/main openjdk-6-jre amd64 6b24-1.11.1-6 [237 kB] Get:125 http://localhost/debian/ unstable/main default-jre amd64 1:1.6-47 [836 B] Get:126 http://localhost/debian/ unstable/main openjdk-6-jdk amd64 6b24-1.11.1-6 [11.0 MB] Get:127 http://localhost/debian/ unstable/main default-jdk amd64 1:1.6-47 [834 B] Get:128 http://localhost/debian/ unstable/main hdf5-helpers amd64 1.8.8-9 [32.5 kB] Get:129 http://localhost/debian/ unstable/main libblas3 amd64 1.2.20110419-3 [293 kB] Get:130 http://localhost/debian/ unstable/main libblas3gf amd64 1.2.20110419-3 [7804 B] Get:131 http://localhost/debian/ unstable/main libexpat1-dev amd64 2.1.0-1 [229 kB] Get:132 http://localhost/debian/ unstable/main libhdf4-0 amd64 4.2r4-13 [354 kB] Get:133 http://localhost/debian/ unstable/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] Get:134 http://localhost/debian/ unstable/main libjpeg8-dev amd64 8d-1 [242 kB] Get:135 http://localhost/debian/ unstable/main libhdf4-dev amd64 4.2r4-13 [545 kB] Get:136 http://localhost/debian/ unstable/main libhdf4g-dev all 4.2r4-13 [13.4 kB] Get:137 http://localhost/debian/ unstable/main libhdf5-7 amd64 1.8.8-9 [1431 kB] Get:138 http://localhost/debian/ unstable/main libhdf5-dev amd64 1.8.8-9 [2546 kB] Get:139 http://localhost/debian/ unstable/main libhdf5-serial-dev amd64 1.8.8-9 [24.3 kB] Get:140 http://localhost/debian/ unstable/main liblapack3 amd64 3.4.1-3 [5035 kB] Get:141 http://localhost/debian/ unstable/main liblapack3gf amd64 3.4.1-3 [10.5 kB] Get:142 http://localhost/debian/ unstable/main libmxml1 amd64 2.6-2 [28.0 kB] Get:143 http://localhost/debian/ unstable/main libmxml-dev amd64 2.6-2 [62.3 kB] Get:144 http://localhost/debian/ unstable/main libpython2.6 amd64 2.6.7-4 [1087 kB] Get:145 http://localhost/debian/ unstable/main libpython2.7 amd64 2.7.3-1 [1212 kB] Get:146 http://localhost/debian/ unstable/main libssl-dev amd64 1.0.1c-3 [1696 kB] Get:147 http://localhost/debian/ unstable/main libtool amd64 2.4.2-1.1 [619 kB] Get:148 http://localhost/debian/ unstable/main libxml2-dev amd64 2.8.0+dfsg1-4 [899 kB] Get:149 http://localhost/debian/ unstable/main python-all all 2.7.3~rc2-1 [880 B] Get:150 http://localhost/debian/ unstable/main python2.7-dev amd64 2.7.3-1 [22.3 MB] Get:151 http://localhost/debian/ unstable/main python-dev all 2.7.3~rc2-1 [912 B] Get:152 http://localhost/debian/ unstable/main python2.6-dev amd64 2.6.7-4 [4832 kB] Get:153 http://localhost/debian/ unstable/main python-all-dev all 2.7.3~rc2-1 [894 B] Get:154 http://localhost/debian/ unstable/main python-numpy amd64 1:1.6.2-1 [2631 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 139 MB in 6s (22.9 MB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 11810 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-9_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ... Selecting previously unselected package libcap2:amd64. Unpacking libcap2:amd64 (from .../libcap2_1%3a2.22-1.1_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-3_amd64.deb) ... 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Selecting previously unselected package libnss3:amd64. Unpacking libnss3:amd64 (from .../libnss3_2%3a3.13.5-1_amd64.deb) ... Selecting previously unselected package libpcsclite1:amd64. Unpacking libpcsclite1:amd64 (from .../libpcsclite1_1.8.3-3_amd64.deb) ... Selecting previously unselected package libjson0:amd64. Unpacking libjson0:amd64 (from .../libjson0_0.9-1.1_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package libvorbis0a:amd64. Unpacking libvorbis0a:amd64 (from .../libvorbis0a_1.3.2-1.3_amd64.deb) ... Selecting previously unselected package libvorbisenc2:amd64. Unpacking libvorbisenc2:amd64 (from .../libvorbisenc2_1.3.2-1.3_amd64.deb) ... Selecting previously unselected package libsndfile1:amd64. Unpacking libsndfile1:amd64 (from .../libsndfile1_1.0.25-5_amd64.deb) ... Selecting previously unselected package libx11-xcb1:amd64. 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Selecting previously unselected package default-jdk. Unpacking default-jdk (from .../default-jdk_1%3a1.6-47_amd64.deb) ... Selecting previously unselected package hdf5-helpers. Unpacking hdf5-helpers (from .../hdf5-helpers_1.8.8-9_amd64.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-3_amd64.deb) ... Selecting previously unselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-3_amd64.deb) ... Selecting previously unselected package libexpat1-dev. Unpacking libexpat1-dev (from .../libexpat1-dev_2.1.0-1_amd64.deb) ... Selecting previously unselected package libhdf4-0. Unpacking libhdf4-0 (from .../libhdf4-0_4.2r4-13_amd64.deb) ... Selecting previously unselected package zlib1g-dev:amd64. Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_amd64.deb) ... Selecting previously unselected package libjpeg8-dev:amd64. Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8d-1_amd64.deb) ... 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Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-1) ... Setting up libkeyutils1:amd64 (1.5.5-2) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-1) ... Setting up libmagic1:amd64 (5.11-1) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1) ... Setting up libwrap0:amd64 (7.6.q-23) ... Setting up libxml2:amd64 (2.8.0+dfsg1-4) ... Setting up libasound2:amd64 (1.0.25-3) ... Setting up libasyncns0:amd64 (0.8-4) ... Setting up libglib2.0-0:amd64 (2.32.3-1) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.4.0-2) ... Setting up libatk1.0-0:amd64 (2.4.0-2) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libfreetype6:amd64 (2.4.9-1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.9.0-6) ... Setting up libfontconfig1:amd64 (2.9.0-6) ... Setting up libpixman-1-0:amd64 (0.26.0-2) ... Setting up libpng12-0:amd64 (1.2.49-1) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-1) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxcb-render0:amd64 (1.8.1-1) ... Setting up libxcb-shm0:amd64 (1.8.1-1) ... Setting up libxrender1:amd64 (1:0.9.7-1) ... Setting up libcairo2:amd64 (1.12.2-2) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libjasper1:amd64 (1.900.1-13) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff4:amd64 (3.9.6-5) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.26.1-1) ... Setting up libgtk2.0-common (2.24.10-1) ... Setting up libavahi-common-data:amd64 (0.6.31-1) ... Setting up libavahi-common3:amd64 (0.6.31-1) ... Setting up libdbus-1-3:amd64 (1.6.0-1) ... Setting up libavahi-client3:amd64 (0.6.31-1) ... Setting up libcups2:amd64 (1.5.3-2) ... Setting up libthai-data (0.1.18-1) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libthai0:amd64 (0.1.18-1) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-6) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libxcomposite1:amd64 (1:0.4.3-2) ... Setting up libxfixes3:amd64 (1:5.0-4) ... Setting up libxcursor1:amd64 (1:1.1.13-1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2) ... Setting up libxi6:amd64 (2:1.6.1-1) ... Setting up libxinerama1:amd64 (2:1.1.2-1) ... Setting up libxrandr2:amd64 (2:1.3.2-2) ... Setting up shared-mime-info (1.0-1) ... Setting up libgtk2.0-0:amd64 (2.24.10-1) ... Setting up libatk-wrapper-java (0.30.4-2) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.4-2) ... Setting up libcroco3:amd64 (0.6.5-1) ... Setting up libogg0:amd64 (1.3.0-4) ... Setting up libflac8:amd64 (1.2.1-6) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-9) ... Setting up libgfortran3:amd64 (4.7.1-1) ... Setting up x11-common (1:7.6+13) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libnspr4:amd64 (2:4.9.1-1) ... Setting up libnss3:amd64 (2:3.13.5-1) ... Setting up libpcsclite1:amd64 (1.8.3-3) ... Setting up libjson0:amd64 (0.9-1.1) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libvorbis0a:amd64 (1.3.2-1.3) ... Setting up libvorbisenc2:amd64 (1.3.2-1.3) ... Setting up libsndfile1:amd64 (1.0.25-5) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1) ... Setting up libxtst6:amd64 (2:1.2.1-1) ... Setting up libpulse0:amd64 (2.0-3) ... Setting up openssl (1.0.1c-3) ... Setting up ca-certificates (20120212) ... Updating certificates in /etc/ssl/certs... 151 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up java-common (0.47) ... Setting up tzdata-java (2012c-1) ... Setting up libnss3-1d:amd64 (2:3.13.5-1) ... Setting up libdb4.8:amd64 (4.8.30-11) ... Setting up bsdmainutils (9.0.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up groff-base (1.21-8) ... Setting up man-db (2.6.2-1) ... Building database of manual pages ... Setting up file (5.11-1) ... Setting up gettext-base (0.18.1.1-9) ... Setting up m4 (1.4.16-3) ... Setting up mime-support (3.52-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7-minimal (2.7.3-1) ... Setting up python2.7 (2.7.3-1) ... Setting up python-minimal (2.7.3~rc2-1) ... Setting up python (2.7.3~rc2-1) ... Setting up python-support (1.0.14) ... Setting up python2.6-minimal (2.6.7-4) ... Setting up python2.6 (2.6.7-4) ... Setting up autoconf (2.69-1) ... Setting up autotools-dev (20120608.1) ... Setting up automake (1:1.11.5-2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-9) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120608) ... Setting up libgif4 (4.1.6-9.1) ... Setting up hdf5-helpers (1.8.8-9) ... Setting up libblas3 (1.2.20110419-3) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode. Setting up libblas3gf (1.2.20110419-3) ... Setting up libexpat1-dev (2.1.0-1) ... Setting up libhdf4-0 (4.2r4-13) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libjpeg8-dev:amd64 (8d-1) ... Setting up libhdf4-dev (4.2r4-13) ... Setting up libhdf4g-dev (4.2r4-13) ... Setting up libhdf5-7 (1.8.8-9) ... Setting up libhdf5-dev (1.8.8-9) ... Setting up libhdf5-serial-dev (1.8.8-9) ... Setting up liblapack3 (3.4.1-3) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode. Setting up liblapack3gf (3.4.1-3) ... Setting up libmxml1 (2.6-2) ... Setting up libmxml-dev (2.6-2) ... Setting up libpython2.6 (2.6.7-4) ... Setting up libpython2.7 (2.7.3-1) ... Setting up libssl-dev (1.0.1c-3) ... Setting up libtool (2.4.2-1.1) ... Setting up libxml2-dev:amd64 (2.8.0+dfsg1-4) ... Setting up python-all (2.7.3~rc2-1) ... Setting up python2.7-dev (2.7.3-1) ... Setting up python-dev (2.7.3~rc2-1) ... Setting up python2.6-dev (2.6.7-4) ... Setting up python-all-dev (2.7.3~rc2-1) ... Setting up python-numpy (1:1.6.2-1) ... Setting up openjdk-6-jre-headless:amd64 (6b24-1.11.1-6) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode. Setting up default-jre-headless (1:1.6-47) ... Setting up openjdk-6-jre:amd64 (6b24-1.11.1-6) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode. Setting up default-jre (1:1.6-47) ... Setting up openjdk-6-jdk:amd64 (6b24-1.11.1-6) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode. Setting up default-jdk (1:1.6-47) ... Setting up sbuild-build-depends-nexus-dummy (0.invalid.0) ... Setting up ca-certificates-java (20120608) ... Adding debian:spi-cacert-2008.pem Adding debian:spi-ca-2003.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Wells_Fargo_Root_CA.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Thawte_Server_CA.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:TDC_OCES_Root_CA.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:TC_TrustCenter_Universal_CA_III.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Juur-SK.pem Adding debian:Izenpe.com.pem Adding debian:IGC_A.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:Firmaprofesional_Root_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_2.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:ComSign_Secured_CA.pem Adding debian:ComSign_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certigna.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CNNIC_ROOT.pem Adding debian:CA_Disig.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:ACEDICOM_Root.pem Adding debian:A-Trust-nQual-03.pem Adding debian:ca.pem Adding debian:cacert.org.pem done. Setting up openjdk-6-jre-lib (6b24-1.11.1-6) ... Processing triggers for python-support ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1 Package versions: apt_0.9.7 autoconf_2.69-1 automake_1:1.11.5-2 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.25 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 ca-certificates_20120212 ca-certificates-java_20120608 clang_3.1-6 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 default-jdk_1:1.6-47 default-jre_1:1.6-47 default-jre-headless_1:1.6-47 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 fontconfig_2.9.0-6 fontconfig-config_2.9.0-6 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-8 gzip_1.5-1.1 hdf5-helpers_1.8.8-9 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 java-common_0.47 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasound2_1.0.25-3 libasprintf0c2_0.18.1.1-9 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-2 libatk-wrapper-java-jni_0.30.4-2 libatk1.0-0_2.4.0-2 libatk1.0-data_2.4.0-2 libattr1_1:2.4.46-8 libavahi-client3_0.6.31-1 libavahi-common-data_0.6.31-1 libavahi-common3_0.6.31-1 libblas3_1.2.20110419-3 libblas3gf_1.2.20110419-3 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcairo2_1.12.2-2 libcap2_1:2.22-1.1 libclang-common-dev_3.1-6 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libcups2_1.5.3-2 libdatrie1_0.2.5-3 libdb4.8_4.8.30-11 libdb5.1_5.1.29-4 libdbus-1-3_1.6.0-1 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libflac8_1.2.1-6 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-11 libgdk-pixbuf2.0-0_2.26.1-1 libgdk-pixbuf2.0-common_2.26.1-1 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.1-1 libgif4_4.1.6-9.1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-1 libgomp1_4.7.1-1 libgpg-error0_1.10-3 libgssapi-krb5-2_1.10.1+dfsg-1 libgtk2.0-0_2.24.10-1 libgtk2.0-common_2.24.10-1 libhdf4-0_4.2r4-13 libhdf4-dev_4.2r4-13 libhdf4g-dev_4.2r4-13 libhdf5-7_1.8.8-9 libhdf5-dev_1.8.8-9 libhdf5-serial-dev_1.8.8-9 libice6_2:1.0.8-2 libitm1_4.7.1-1 libjasper1_1.900.1-13 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libjson0_0.9-1.1 libk5crypto3_1.10.1+dfsg-1 libkeyutils1_1.5.5-2 libkrb5-3_1.10.1+dfsg-1 libkrb5support0_1.10.1+dfsg-1 liblapack3_3.4.1-3 liblapack3gf_3.4.1-3 libllvm3.1_3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libmxml-dev_2.6-2 libmxml1_2.6-2 libncurses5_5.9-9 libncursesw5_5.9-9 libnspr4_2:4.9.1-1 libnss3_2:3.13.5-1 libnss3-1d_2:3.13.5-1 libogg0_1.3.0-4 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpcre3_1:8.30-5 libpcsclite1_1.8.3-3 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-2 libpng12-0_1.2.49-1 libpulse0_2.0-3 libpython2.6_2.6.7-4 libpython2.7_2.7.3-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsm6_2:1.2.1-2 libsndfile1_1.0.25-5 libsqlite3-0_3.7.13-1 libss2_1.42.4-3 libssl-dev_1.0.1c-3 libssl1.0.0_1.0.1c-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libtool_2.4.2-1.1 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libwrap0_7.6.q-23 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.13-1 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft2_2.3.1-1 libxi6_2:1.6.1-1 libxinerama1_2:1.1.2-1 libxml2_2.8.0+dfsg1-4 libxml2-dev_2.8.0+dfsg1-4 libxrandr2_2:1.3.2-2 libxrender1_1:0.9.7-1 libxtst6_2:1.2.1-1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 m4_1.4.16-3 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mime-support_3.52-1 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 openjdk-6-jdk_6b24-1.11.1-6 openjdk-6-jre_6b24-1.11.1-6 openjdk-6-jre-headless_6b24-1.11.1-6 openjdk-6-jre-lib_6b24-1.11.1-6 openssl_1.0.1c-3 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 python_2.7.3~rc2-1 python-all_2.7.3~rc2-1 python-all-dev_2.7.3~rc2-1 python-dev_2.7.3~rc2-1 python-minimal_2.7.3~rc2-1 python-numpy_1:1.6.2-1 python-support_1.0.14 python2.6_2.6.7-4 python2.6-dev_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.3-1 python2.7-dev_2.7.3-1 python2.7-minimal_2.7.3-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-nexus-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 shared-mime-info_1.0-1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 ttf-dejavu-core_2.33-2 tzdata_2012c-1 tzdata-java_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 x11-common_1:7.6+13 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat Jul 30 06:56:49 2011 UTC using DSA key ID 93701EEF gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./nexus_4.2.1-svn1614-1.dsc dpkg-source: info: extracting nexus in nexus-4.2.1-svn1614 dpkg-source: info: unpacking nexus_4.2.1-svn1614.orig.tar.gz dpkg-source: info: unpacking nexus_4.2.1-svn1614-1.debian.tar.gz dpkg-source: info: applying 0001-add-extra-sanity-checks.patch dpkg-source: info: applying 0002-do-not-use-history-lib-not-needed-for-history-but-cr.patch dpkg-source: info: applying 0003-look-for-sonamed-version-of-library.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=root PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11 SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=0 SCHROOT_GROUP=root SCHROOT_SESSION_ID=unstable-amd64-sbuild-2376e3d6-8307-484b-8aa6-4fc7c7c43c0f SCHROOT_UID=0 SCHROOT_USER=root SHELL=/bin/sh USER=root dpkg-buildpackage ───────────────── dpkg-buildpackage: warning: using a gain-root-command while being root dpkg-buildpackage: source package nexus dpkg-buildpackage: source version 4.2.1-svn1614-1 dpkg-buildpackage: source changed by Tobias Stefan Richter dpkg-source --before-build nexus-4.2.1-svn1614 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean sh autogen.sh Using autoconf (GNU Autoconf) 2.69 Using automake (GNU automake) 1.11.5 Using libtoolize (GNU libtool) 2.4.2 Locating GNU m4... /usr/bin/m4 Preparing the use of libtool ... done. Building macros... done. Building config header template... done. Building Makefile templates... configure.ac:260: installing `config/compile' configure.ac:43: installing `config/config.guess' configure.ac:43: installing `config/config.sub' configure.ac:58: installing `config/install-sh' configure.ac:58: installing `config/missing' applications/Makefile.am: installing `config/depcomp' bindings/python/Makefile.am:36: installing `config/py-compile' Makefile.am: installing `./INSTALL' done. Building configure... done. dh_testdir cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess ## -D_FILE_OFFSET_BITS=64 for large file support (will be default in next version) ./configure --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info CFLAGS="-D_FILE_OFFSET_BITS=64 " LDFLAGS="-Wl,-z,defs" --with-java-home=`readlink /etc/alternatives/javac | sed s,/bin/javac,,` --with-python=/usr checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of x86_64-linux-gnu-gcc... gcc3 checking for C compiler option -fno-common... yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-linux-gnu-g++... gcc3 checking for matlab... no checking for __thread... yes configure: Java SDK home is /usr/lib/jvm/java-6-openjdk-amd64 checking for javac... /usr/lib/jvm/java-6-openjdk-amd64/bin/javac checking for java... /usr/lib/jvm/java-6-openjdk-amd64/bin/java checking for javah... /usr/lib/jvm/java-6-openjdk-amd64/bin/javah checking for javadoc... /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc checking for jar... /usr/lib/jvm/java-6-openjdk-amd64/bin/jar checking for x86_64-linux-gnu-gcj... no checking for gcj... no checking dependency style of gcj... none checking whether x86_64-linux-gnu-gcc and cc understand -c and -o together... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... no checking for strip... strip checking for x86_64-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for x86_64-linux-gnu-gcj... gcj checking dependency style of gcj... (cached) none checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... yes checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if gcj supports -fno-rtti -fno-exceptions... (cached) yes checking for gcj option to produce PIC... -fPIC checking if gcj PIC flag -fPIC works... no checking if gcj static flag -static works... no checking if gcj supports -c -o file.o... no checking if gcj supports -c -o file.o... (cached) no checking whether the gcj linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking for x86_64-linux-gnu-ranlib... ranlib checking for python root installation directory... /usr checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for python module numpy... found checking for docbook2pdf... no checking for docbook2txt... no checking for tclsh... no checking for guile... no checking for latex... no checking for wget... no checking for xmllint... no checking for LIB... no checking for location of HDF4 libraries... /usr checking for location of HDF5 libraries... /usr checking for location of mxml package... /usr checking for fprintf in -lSystemStubs... no checking for log in -lm... yes checking for xdr_float in -lrpc... no checking for dlopen in -ldl... yes checking for pthread_create in -lpthread... yes checking for gzopen in -lz... yes checking for jpeg_CreateCompress in -ljpeg... yes checking for SZ_Compress in -lsz... no checking for Hopen in -ldf... yes checking for SDcreate in -lmfhdf... yes checking for H5open in -lhdf5... yes checking for xmlParseDocument in -lxml2... yes checking for readline in -lreadline... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for stdint.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for long long int... yes checking for unsigned long long int... yes checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking whether struct tm is in sys/time.h or time.h... time.h checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ftime... yes checking for memset... yes checking for strchr... yes checking for strdup... yes checking for strrchr... yes checking for strstr... yes checking for tzset... yes checking for mkstemp... yes checking for rl_completion_matches... no configure: creating ./config.status config.status: creating test/Makefile config.status: creating test/atlocal config.status: creating Makefile config.status: creating nexus.spec config.status: creating build_rpm config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating applications/Makefile config.status: creating applications/NXdir/Makefile config.status: creating applications/nxingest/Makefile config.status: creating applications/NXsummary/Makefile config.status: creating applications/NXtranslate/Makefile config.status: creating applications/NXtranslate/IPNS_CPP/Makefile config.status: creating applications/NXtranslate/FRM2/Makefile config.status: creating applications/NXtranslate/opengenie/Makefile config.status: creating applications/NXtranslate/text_collist/Makefile config.status: creating applications/NXtranslate/text_plain/Makefile config.status: creating applications/NXtranslate/text_xml/Makefile config.status: creating applications/NXtranslate/sns_histogram/Makefile config.status: creating applications/NXtranslate/loopy/Makefile config.status: creating applications/NXtranslate/binary/Makefile config.status: creating applications/NXtranslate/spec/Makefile config.status: creating applications/NXtranslate/esrf_edf/Makefile config.status: creating applications/NXtranslate/docs/Makefile config.status: creating examples/Makefile config.status: creating doc/Makefile config.status: creating doc/doxygen/Makefile config.status: creating doc/api/Makefile config.status: creating doc/nxdict/Makefile config.status: creating doc/tech_ref/Makefile config.status: creating bindings/Makefile config.status: creating bindings/cpp/Makefile config.status: creating bindings/f77/Makefile config.status: creating bindings/f90/Makefile config.status: creating bindings/java/Makefile config.status: creating bindings/swig/Makefile config.status: creating bindings/idl/Makefile config.status: creating bindings/python/Makefile config.status: creating contrib/Makefile config.status: creating contrib/applications/Makefile config.status: creating contrib/applications/CBFLib/Makefile config.status: creating contrib/bindings/Makefile config.status: creating contrib/bindings/python/Makefile config.status: creating macosx_install_kit/Makefile config.status: creating macosx_install_kit/pkg.config config.status: creating scripts/Makefile config.status: creating scripts/nexus.pc config.status: creating scripts/nxbuild config.status: creating include/nxconfig.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing test/atconfig commands Configuration (NeXus): Install prefix: /usr Source code location: . Version: 4.2.1 Compiler: x86_64-linux-gnu-gcc,x86_64-linux-gnu-g++,, build: NeXus with: HDF4 support: yes (4.2.4) HDF5 support: yes (1.8.8) XML support: yes bindings: C++ : yes (--with-cxx=x86_64-linux-gnu-g++) F77 : no (--with-f77=) F90/F95 : no (--with-f90=) JAVA: yes (--with-java-home=/usr/lib/jvm/java-6-openjdk-amd64, JAVA=/usr/lib/jvm/java-6-openjdk-amd64/bin/java, JAVAC=/usr/lib/jvm/java-6-openjdk-amd64/bin/javac, JAVAH=/usr/lib/jvm/java-6-openjdk-amd64/bin/javah) SWIG: no IDL: no (--with-idlroot=, --with-idldlm=${prefix}/lib) PYTHON: yes (PYTHONROOT=/usr, numpy found: yes) documentation: Doxygen: no --with-doxygen not specified Docbook: no - missing docbook2txt docbook2pdf Please check whether the configuration I detected matches what you would like to have. If not, re-run configure adding the appropriate --with option or setting the relevant environment variable. For a list of available options type ./configure --help sed < libtool > libtool-2 -e 's/^hardcode_libdir_flag_spec.*$/hardcode_libdir_flag_spec=" -D__LIBTOOL_IS_A_FOOL__ "/' -e '/^archive_cmds="/s/"$/ \\$deplibs"/' mv libtool-2 libtool chmod 755 libtool dh_testdir dh_testroot rm -f build-stamp /usr/bin/make maintainer-clean make[1]: Entering directory `/«PKGBUILDDIR»' Making maintainer-clean in contrib make[2]: Entering directory `/«PKGBUILDDIR»/contrib' Making maintainer-clean in applications make[3]: Entering directory `/«PKGBUILDDIR»/contrib/applications' Making maintainer-clean in CBFLib make[4]: Entering directory `/«PKGBUILDDIR»/contrib/applications/CBFLib' rm -f cbf2nx rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/contrib/applications/CBFLib' Making maintainer-clean in . make[4]: Entering directory `/«PKGBUILDDIR»/contrib/applications' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[4]: Leaving directory `/«PKGBUILDDIR»/contrib/applications' rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/contrib/applications' Making maintainer-clean in bindings make[3]: Entering directory `/«PKGBUILDDIR»/contrib/bindings' Making maintainer-clean in python make[4]: Entering directory `/«PKGBUILDDIR»/contrib/bindings/python' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/contrib/bindings/python' Making maintainer-clean in . make[4]: Entering directory `/«PKGBUILDDIR»/contrib/bindings' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[4]: Leaving directory `/«PKGBUILDDIR»/contrib/bindings' rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/contrib/bindings' Making maintainer-clean in . make[3]: Entering directory `/«PKGBUILDDIR»/contrib' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[3]: Leaving directory `/«PKGBUILDDIR»/contrib' rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/contrib' Making maintainer-clean in macosx_install_kit make[2]: Entering directory `/«PKGBUILDDIR»/macosx_install_kit' rm -rf .libs _libs rm -f *.lo test -z "pkg.config" || rm -f pkg.config test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/macosx_install_kit' Making maintainer-clean in doc make[2]: Entering directory `/«PKGBUILDDIR»/doc' Making maintainer-clean in doxygen make[3]: Entering directory `/«PKGBUILDDIR»/doc/doxygen' test -z "doxy.remove_me_to_remake" || rm -f doxy.remove_me_to_remake rm -rf .libs _libs rm -fr html-* latex-* refman.pdf rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/doc/doxygen' Making maintainer-clean in tech_ref make[3]: Entering directory `/«PKGBUILDDIR»/doc/tech_ref' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/doc/tech_ref' Making maintainer-clean in nxdict make[3]: Entering directory `/«PKGBUILDDIR»/doc/nxdict' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/doc/nxdict' Making maintainer-clean in api make[3]: Entering directory `/«PKGBUILDDIR»/doc/api' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/doc/api' Making maintainer-clean in . make[3]: Entering directory `/«PKGBUILDDIR»/doc' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[3]: Leaving directory `/«PKGBUILDDIR»/doc' rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/doc' Making maintainer-clean in examples make[2]: Entering directory `/«PKGBUILDDIR»/examples' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/examples' Making maintainer-clean in scripts make[2]: Entering directory `/«PKGBUILDDIR»/scripts' rm -rf .libs _libs rm -f *.lo test -z "nexus.pc nxbuild" || rm -f nexus.pc nxbuild test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/scripts' Making maintainer-clean in test make[2]: Entering directory `/«PKGBUILDDIR»/test' rm -f run_test skip_test napi_test-hdf4 napi_test-hdf4-static napi_test_cpp-hdf4 napi_test-hdf5 napi_test-hdf5-static napi_test_cpp-hdf5 napif_test-hdf4 napif_test-hdf5 NXtest napi_test-xml napi_test-xml-static napi_test-xml-table-static napi_test_cpp-xml napi_test_cpp-xml-table leak_test2 leak_test3 leak_test1 test -z "NXtest.nx4 NXtest.nx5 NXtest.nxs NXtest.xml NXtest-table.xml leak_test.nxs leak_test1.nxs leak_test2_*.nxs nxtranslate nxsummary nxconvert nxvalidate nxdir nxbrowse NXtest.h4 NXtest.h5" || rm -f NXtest.nx4 NXtest.nx5 NXtest.nxs NXtest.xml NXtest-table.xml leak_test.nxs leak_test1.nxs leak_test2_*.nxs nxtranslate nxsummary nxconvert nxvalidate nxdir nxbrowse NXtest.h4 NXtest.h5 rm -rf .libs _libs /bin/bash ./testsuite --clean /bin/bash: ./testsuite: No such file or directory make[2]: [clean-local] Error 127 (ignored) rm -f *.o rm -f *.lo rm -f *.tab.c test -z "atlocal" || rm -f atlocal test . = "." || test -z "" || rm -f test -z "atconfig" || rm -f atconfig rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/test' Making maintainer-clean in applications make[2]: Entering directory `/«PKGBUILDDIR»/applications' Making maintainer-clean in nxingest make[3]: Entering directory `/«PKGBUILDDIR»/applications/nxingest' rm -f nxingest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/applications/nxingest' Making maintainer-clean in NXsummary make[3]: Entering directory `/«PKGBUILDDIR»/applications/NXsummary' rm -f nxsummary rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/applications/NXsummary' Making maintainer-clean in NXtranslate make[3]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate' Making maintainer-clean in opengenie make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/opengenie' test -z "libnxgenie.la" || rm -f libnxgenie.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/opengenie' Making maintainer-clean in esrf_edf make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/esrf_edf' rm -rf .libs _libs test -z "libEdf.la" || rm -f libEdf.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/esrf_edf' Making maintainer-clean in spec make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/spec' rm -rf .libs _libs test -z "libSpec.la" || rm -f libSpec.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/spec' Making maintainer-clean in binary make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/binary' rm -rf .libs _libs test -z "libBinaryRetriever.la" || rm -f libBinaryRetriever.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/binary' Making maintainer-clean in loopy make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/loopy' rm -rf .libs _libs test -z "libLoopy.la" || rm -f libLoopy.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/loopy' Making maintainer-clean in FRM2 make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/FRM2' rm -rf .libs _libs test -z "libFRM2.la" || rm -f libFRM2.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/FRM2' Making maintainer-clean in docs make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/docs' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/docs' Making maintainer-clean in sns_histogram make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/sns_histogram' rm -rf .libs _libs test -z "libSNShistogram.la" || rm -f libSNShistogram.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/sns_histogram' Making maintainer-clean in text_xml make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/text_xml' rm -rf .libs _libs test -z "libTextXML.la" || rm -f libTextXML.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/text_xml' Making maintainer-clean in text_plain make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/text_plain' rm -rf .libs _libs test -z "libTextPlain.la" || rm -f libTextPlain.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/text_plain' Making maintainer-clean in text_collist make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/text_collist' rm -rf .libs _libs test -z "libTextCollist.la" || rm -f libTextCollist.la rm -f "./so_locations" rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/text_collist' Making maintainer-clean in IPNS_CPP make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/IPNS_CPP' rm -rf .libs _libs test -z "libIPNSRunfile.la" || rm -f libIPNSRunfile.la rm -f "./so_locations" rm -f testProg testProg2 rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/IPNS_CPP' Making maintainer-clean in . make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate' rm -f nxtranslate rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate' rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate' Making maintainer-clean in NXdir make[3]: Entering directory `/«PKGBUILDDIR»/applications/NXdir' rm -f nxdir rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/applications/NXdir' Making maintainer-clean in . make[3]: Entering directory `/«PKGBUILDDIR»/applications' rm -f nxbrowse nx2dtd nxconvert nxvalidate rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[3]: Leaving directory `/«PKGBUILDDIR»/applications' rm -rf ./.deps rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/applications' Making maintainer-clean in bindings make[2]: Entering directory `/«PKGBUILDDIR»/bindings' Making maintainer-clean in python make[3]: Entering directory `/«PKGBUILDDIR»/bindings/python' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/python' Making maintainer-clean in idl make[3]: Entering directory `/«PKGBUILDDIR»/bindings/idl' test -z "NeXusIDL-API.so" || rm -f NeXusIDL-API.so test -z "libNeXusIDL-API.la" || rm -f libNeXusIDL-API.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/idl' Making maintainer-clean in swig make[3]: Entering directory `/«PKGBUILDDIR»/bindings/swig' rm -f test -z " " || rm -f test -z " " || rm -f rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. test -z " " || rm -f rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/swig' Making maintainer-clean in java make[3]: Entering directory `/«PKGBUILDDIR»/bindings/java' test -z "ncsa/hdf/hdflib/HDFException.class ncsa/hdf/hdflib/HDFJavaException.class ncsa/hdf/hdflib/HDFConstants.class ncsa/hdf/hdflib/HDFNativeData.class ncsa/hdf/hdflib/HDFArray.class ncsa/hdf/hdflib/HDFNotImplementedException.class org/nexusformat/AttributeEntry.class org/nexusformat/NexusException.class org/nexusformat/NXlink.class org/nexusformat/NeXusFileInterface.class org/nexusformat/NexusFile.class jnexus.jar native/org_nexusformat_NexusFile.h libjnexus.def libjnexus.dll.lib libjnexus.dll.exp jnexus.dll ncsa/hdf/hdflib/ArrayDescriptor.class" || rm -f ncsa/hdf/hdflib/HDFException.class ncsa/hdf/hdflib/HDFJavaException.class ncsa/hdf/hdflib/HDFConstants.class ncsa/hdf/hdflib/HDFNativeData.class ncsa/hdf/hdflib/HDFArray.class ncsa/hdf/hdflib/HDFNotImplementedException.class org/nexusformat/AttributeEntry.class org/nexusformat/NexusException.class org/nexusformat/NXlink.class org/nexusformat/NeXusFileInterface.class org/nexusformat/NexusFile.class jnexus.jar native/org_nexusformat_NexusFile.h libjnexus.def libjnexus.dll.lib libjnexus.dll.exp jnexus.dll ncsa/hdf/hdflib/ArrayDescriptor.class test -z "libjnexus.la" || rm -f libjnexus.la rm -f "./so_locations" rm -rf .libs _libs rm -rf apidoc rm -f *.class classnoinst.stamp rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. test -z "native/org_nexusformat_NexusFile.h" || rm -f native/org_nexusformat_NexusFile.h rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/java' Making maintainer-clean in f90 make[3]: Entering directory `/«PKGBUILDDIR»/bindings/f90' test -z "libNeXus90.la_orig nxmodule.mod nxumodule.mod" || rm -f libNeXus90.la_orig nxmodule.mod nxumodule.mod test -z "libNeXus90.la" || rm -f libNeXus90.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/f90' Making maintainer-clean in f77 make[3]: Entering directory `/«PKGBUILDDIR»/bindings/f77' test -z "libNeXus77.la" || rm -f libNeXus77.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/f77' Making maintainer-clean in cpp make[3]: Entering directory `/«PKGBUILDDIR»/bindings/cpp' test -z "libNeXusCPP.def libNeXusCPP.dll.lib libNeXusCPP.dll.exp" || rm -f libNeXusCPP.def libNeXusCPP.dll.lib libNeXusCPP.dll.exp test -z "libNeXusCPP.la" || rm -f libNeXusCPP.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/cpp' Making maintainer-clean in . make[3]: Entering directory `/«PKGBUILDDIR»/bindings' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. make[3]: Leaving directory `/«PKGBUILDDIR»/bindings' rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/bindings' Making maintainer-clean in src make[2]: Entering directory `/«PKGBUILDDIR»/src' test -z "libNeXus.def libNeXus.dll.lib libNeXus.dll.exp nexus_symbols.sym" || rm -f libNeXus.def libNeXus.dll.lib libNeXus.dll.exp nexus_symbols.sym test -z "libNeXus.la" || rm -f libNeXus.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -rf ./.deps rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/src' Making maintainer-clean in include make[2]: Entering directory `/«PKGBUILDDIR»/include' rm -rf .libs _libs rm -f *.lo test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f nxconfig.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. rm -f Makefile make[2]: Leaving directory `/«PKGBUILDDIR»/include' Making maintainer-clean in . make[2]: Entering directory `/«PKGBUILDDIR»' rm -rf .libs _libs rm -f *.lo test -z "nexus.spec build_rpm" || rm -f nexus.spec build_rpm test . = "." || test -z "" || rm -f rm -f libtool config.lt rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags This command is intended for maintainers to use it deletes files that may require special tools to rebuild. test -z "ChangeLog INSTALL aclocal.m4 config configure doc/tech_ref/NeXus_definitions.pdf doc/tech_ref/NeXus_definitions.txt include/nxconfig_h.in `find "." -type f -name Makefile.in -print`" || rm -f ChangeLog INSTALL aclocal.m4 config configure doc/tech_ref/NeXus_definitions.pdf doc/tech_ref/NeXus_definitions.txt include/nxconfig_h.in `find "." -type f -name Makefile.in -print` rm: cannot remove `config': Is a directory make[2]: [maintainer-clean-generic] Error 1 (ignored) make[2]: Leaving directory `/«PKGBUILDDIR»' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -rf ./autom4te.cache rm -f Makefile make[1]: Leaving directory `/«PKGBUILDDIR»' rm -f config.sub config.guess rm -fr config || true rm -fr .pc || true dh_clean dpkg-buildpackage: warning: debian/rules must be updated to support the 'build-arch' and 'build-indep' targets (at least 'build-arch' seems to be missing) debian/rules build sh autogen.sh Using autoconf (GNU Autoconf) 2.69 Using automake (GNU automake) 1.11.5 Using libtoolize (GNU libtool) 2.4.2 Locating GNU m4... /usr/bin/m4 Preparing the use of libtool ... done. Building macros... done. Building config header template... done. Building Makefile templates... configure.ac:260: installing `config/compile' configure.ac:43: installing `config/config.guess' configure.ac:43: installing `config/config.sub' configure.ac:58: installing `config/install-sh' configure.ac:58: installing `config/missing' applications/Makefile.am: installing `config/depcomp' bindings/python/Makefile.am:36: installing `config/py-compile' Makefile.am: installing `./INSTALL' done. Building configure... done. dh_testdir cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess ## -D_FILE_OFFSET_BITS=64 for large file support (will be default in next version) ./configure --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info CFLAGS="-D_FILE_OFFSET_BITS=64 " LDFLAGS="-Wl,-z,defs" --with-java-home=`readlink /etc/alternatives/javac | sed s,/bin/javac,,` --with-python=/usr checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of x86_64-linux-gnu-gcc... gcc3 checking for C compiler option -fno-common... yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-linux-gnu-g++... gcc3 checking for matlab... no checking for __thread... yes configure: Java SDK home is /usr/lib/jvm/java-6-openjdk-amd64 checking for javac... /usr/lib/jvm/java-6-openjdk-amd64/bin/javac checking for java... /usr/lib/jvm/java-6-openjdk-amd64/bin/java checking for javah... /usr/lib/jvm/java-6-openjdk-amd64/bin/javah checking for javadoc... /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc checking for jar... /usr/lib/jvm/java-6-openjdk-amd64/bin/jar checking for x86_64-linux-gnu-gcj... no checking for gcj... no checking dependency style of gcj... none checking whether x86_64-linux-gnu-gcc and cc understand -c and -o together... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... no checking for strip... strip checking for x86_64-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for x86_64-linux-gnu-gcj... gcj checking dependency style of gcj... (cached) none checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... yes checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if gcj supports -fno-rtti -fno-exceptions... (cached) yes checking for gcj option to produce PIC... -fPIC checking if gcj PIC flag -fPIC works... no checking if gcj static flag -static works... no checking if gcj supports -c -o file.o... no checking if gcj supports -c -o file.o... (cached) no checking whether the gcj linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking for x86_64-linux-gnu-ranlib... ranlib checking for python root installation directory... /usr checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for python module numpy... found checking for docbook2pdf... no checking for docbook2txt... no checking for tclsh... no checking for guile... no checking for latex... no checking for wget... no checking for xmllint... no checking for LIB... no checking for location of HDF4 libraries... /usr checking for location of HDF5 libraries... /usr checking for location of mxml package... /usr checking for fprintf in -lSystemStubs... no checking for log in -lm... yes checking for xdr_float in -lrpc... no checking for dlopen in -ldl... yes checking for pthread_create in -lpthread... yes checking for gzopen in -lz... yes checking for jpeg_CreateCompress in -ljpeg... yes checking for SZ_Compress in -lsz... no checking for Hopen in -ldf... yes checking for SDcreate in -lmfhdf... yes checking for H5open in -lhdf5... yes checking for xmlParseDocument in -lxml2... yes checking for readline in -lreadline... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for stdint.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for long long int... yes checking for unsigned long long int... yes checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking whether struct tm is in sys/time.h or time.h... time.h checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ftime... yes checking for memset... yes checking for strchr... yes checking for strdup... yes checking for strrchr... yes checking for strstr... yes checking for tzset... yes checking for mkstemp... yes checking for rl_completion_matches... no configure: creating ./config.status config.status: creating test/Makefile config.status: creating test/atlocal config.status: creating Makefile config.status: creating nexus.spec config.status: creating build_rpm config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating applications/Makefile config.status: creating applications/NXdir/Makefile config.status: creating applications/nxingest/Makefile config.status: creating applications/NXsummary/Makefile config.status: creating applications/NXtranslate/Makefile config.status: creating applications/NXtranslate/IPNS_CPP/Makefile config.status: creating applications/NXtranslate/FRM2/Makefile config.status: creating applications/NXtranslate/opengenie/Makefile config.status: creating applications/NXtranslate/text_collist/Makefile config.status: creating applications/NXtranslate/text_plain/Makefile config.status: creating applications/NXtranslate/text_xml/Makefile config.status: creating applications/NXtranslate/sns_histogram/Makefile config.status: creating applications/NXtranslate/loopy/Makefile config.status: creating applications/NXtranslate/binary/Makefile config.status: creating applications/NXtranslate/spec/Makefile config.status: creating applications/NXtranslate/esrf_edf/Makefile config.status: creating applications/NXtranslate/docs/Makefile config.status: creating examples/Makefile config.status: creating doc/Makefile config.status: creating doc/doxygen/Makefile config.status: creating doc/api/Makefile config.status: creating doc/nxdict/Makefile config.status: creating doc/tech_ref/Makefile config.status: creating bindings/Makefile config.status: creating bindings/cpp/Makefile config.status: creating bindings/f77/Makefile config.status: creating bindings/f90/Makefile config.status: creating bindings/java/Makefile config.status: creating bindings/swig/Makefile config.status: creating bindings/idl/Makefile config.status: creating bindings/python/Makefile config.status: creating contrib/Makefile config.status: creating contrib/applications/Makefile config.status: creating contrib/applications/CBFLib/Makefile config.status: creating contrib/bindings/Makefile config.status: creating contrib/bindings/python/Makefile config.status: creating macosx_install_kit/Makefile config.status: creating macosx_install_kit/pkg.config config.status: creating scripts/Makefile config.status: creating scripts/nexus.pc config.status: creating scripts/nxbuild config.status: creating include/nxconfig.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing test/atconfig commands Configuration (NeXus): Install prefix: /usr Source code location: . Version: 4.2.1 Compiler: x86_64-linux-gnu-gcc,x86_64-linux-gnu-g++,, build: NeXus with: HDF4 support: yes (4.2.4) HDF5 support: yes (1.8.8) XML support: yes bindings: C++ : yes (--with-cxx=x86_64-linux-gnu-g++) F77 : no (--with-f77=) F90/F95 : no (--with-f90=) JAVA: yes (--with-java-home=/usr/lib/jvm/java-6-openjdk-amd64, JAVA=/usr/lib/jvm/java-6-openjdk-amd64/bin/java, JAVAC=/usr/lib/jvm/java-6-openjdk-amd64/bin/javac, JAVAH=/usr/lib/jvm/java-6-openjdk-amd64/bin/javah) SWIG: no IDL: no (--with-idlroot=, --with-idldlm=${prefix}/lib) PYTHON: yes (PYTHONROOT=/usr, numpy found: yes) documentation: Doxygen: no --with-doxygen not specified Docbook: no - missing docbook2txt docbook2pdf Please check whether the configuration I detected matches what you would like to have. If not, re-run configure adding the appropriate --with option or setting the relevant environment variable. For a list of available options type ./configure --help sed < libtool > libtool-2 -e 's/^hardcode_libdir_flag_spec.*$/hardcode_libdir_flag_spec=" -D__LIBTOOL_IS_A_FOOL__ "/' -e '/^archive_cmds="/s/"$/ \\$deplibs"/' mv libtool-2 libtool chmod 755 libtool dh_testdir /usr/bin/make make[1]: Entering directory `/«PKGBUILDDIR»' Making all in include make[2]: Entering directory `/«PKGBUILDDIR»/include' /usr/bin/make all-am make[3]: Entering directory `/«PKGBUILDDIR»/include' make[3]: Leaving directory `/«PKGBUILDDIR»/include' make[2]: Leaving directory `/«PKGBUILDDIR»/include' Making all in src make[2]: Entering directory `/«PKGBUILDDIR»/src' /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi.lo -MD -MP -MF .deps/napi.Tpo -c -o napi.lo napi.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi.lo -MD -MP -MF .deps/napi.Tpo -c napi.c -fPIC -DPIC -o .libs/napi.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi.lo -MD -MP -MF .deps/napi.Tpo -c napi.c -fPIC -DPIC -o napi.o >/dev/null 2>&1 mv -f .deps/napi.Tpo .deps/napi.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napiu.lo -MD -MP -MF .deps/napiu.Tpo -c -o napiu.lo napiu.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napiu.lo -MD -MP -MF .deps/napiu.Tpo -c napiu.c -fPIC -DPIC -o .libs/napiu.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napiu.lo -MD -MP -MF .deps/napiu.Tpo -c napiu.c -fPIC -DPIC -o napiu.o >/dev/null 2>&1 mv -f .deps/napiu.Tpo .deps/napiu.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxstack.lo -MD -MP -MF .deps/nxstack.Tpo -c -o nxstack.lo nxstack.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxstack.lo -MD -MP -MF .deps/nxstack.Tpo -c nxstack.c -fPIC -DPIC -o .libs/nxstack.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxstack.lo -MD -MP -MF .deps/nxstack.Tpo -c nxstack.c -fPIC -DPIC -o nxstack.o >/dev/null 2>&1 mv -f .deps/nxstack.Tpo .deps/nxstack.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT stptok.lo -MD -MP -MF .deps/stptok.Tpo -c -o stptok.lo stptok.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT stptok.lo -MD -MP -MF .deps/stptok.Tpo -c stptok.c -fPIC -DPIC -o .libs/stptok.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT stptok.lo -MD -MP -MF .deps/stptok.Tpo -c stptok.c -fPIC -DPIC -o stptok.o >/dev/null 2>&1 mv -f .deps/stptok.Tpo .deps/stptok.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxdataset.lo -MD -MP -MF .deps/nxdataset.Tpo -c -o nxdataset.lo nxdataset.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxdataset.lo -MD -MP -MF .deps/nxdataset.Tpo -c nxdataset.c -fPIC -DPIC -o .libs/nxdataset.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxdataset.lo -MD -MP -MF .deps/nxdataset.Tpo -c nxdataset.c -fPIC -DPIC -o nxdataset.o >/dev/null 2>&1 mv -f .deps/nxdataset.Tpo .deps/nxdataset.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi4.lo -MD -MP -MF .deps/napi4.Tpo -c -o napi4.lo napi4.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi4.lo -MD -MP -MF .deps/napi4.Tpo -c napi4.c -fPIC -DPIC -o .libs/napi4.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi4.lo -MD -MP -MF .deps/napi4.Tpo -c napi4.c -fPIC -DPIC -o napi4.o >/dev/null 2>&1 mv -f .deps/napi4.Tpo .deps/napi4.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi5.lo -MD -MP -MF .deps/napi5.Tpo -c -o napi5.lo napi5.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi5.lo -MD -MP -MF .deps/napi5.Tpo -c napi5.c -fPIC -DPIC -o .libs/napi5.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT napi5.lo -MD -MP -MF .deps/napi5.Tpo -c napi5.c -fPIC -DPIC -o napi5.o >/dev/null 2>&1 mv -f .deps/napi5.Tpo .deps/napi5.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxxml.lo -MD -MP -MF .deps/nxxml.Tpo -c -o nxxml.lo nxxml.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxxml.lo -MD -MP -MF .deps/nxxml.Tpo -c nxxml.c -fPIC -DPIC -o .libs/nxxml.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxxml.lo -MD -MP -MF .deps/nxxml.Tpo -c nxxml.c -fPIC -DPIC -o nxxml.o >/dev/null 2>&1 mv -f .deps/nxxml.Tpo .deps/nxxml.Plo /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxio.lo -MD -MP -MF .deps/nxio.Tpo -c -o nxio.lo nxio.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxio.lo -MD -MP -MF .deps/nxio.Tpo -c nxio.c -fPIC -DPIC -o .libs/nxio.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY -fno-common -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT nxio.lo -MD -MP -MF .deps/nxio.Tpo -c nxio.c -fPIC -DPIC -o nxio.o >/dev/null 2>&1 mv -f .deps/nxio.Tpo .deps/nxio.Plo cp ./nexus_symbols.txt nexus_symbols.sym /bin/bash ../libtool --tag=CC --mode=link x86_64-linux-gnu-gcc -prefer-pic -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -export-symbols nexus_symbols.sym -L/usr/lib/ -lmfhdf -ldf -L/usr/lib -lhdf5 -lz -L/usr/lib -lmxml -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libNeXus.la -rpath /usr/lib napi.lo napiu.lo nxstack.lo stptok.lo nxdataset.lo napi4.lo napi5.lo nxxml.lo nxio.lo -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: echo "{ global:" > .libs/libNeXus.ver libtool: link: cat nexus_symbols.sym | sed -e "s/\(.*\)/\1;/" >> .libs/libNeXus.ver libtool: link: echo "local: *; };" >> .libs/libNeXus.ver libtool: link: x86_64-linux-gnu-gcc -shared -fPIC -DPIC .libs/napi.o .libs/napiu.o .libs/nxstack.o .libs/stptok.o .libs/nxdataset.o .libs/napi4.o .libs/napi5.o .libs/nxxml.o .libs/nxio.o -L/usr/lib/ -L/usr/lib -lmxml -L/usr/local/lib -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -lm -Wl,-z -Wl,defs -Wl,-z -Wl,defs -Wl,-soname -Wl,libNeXus.so.0 -Wl,-version-script -Wl,.libs/libNeXus.ver -o .libs/libNeXus.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libNeXus.so.0" && ln -s "libNeXus.so.0.0.0" "libNeXus.so.0") libtool: link: (cd ".libs" && rm -f "libNeXus.so" && ln -s "libNeXus.so.0.0.0" "libNeXus.so") libtool: link: ar cru .libs/libNeXus.a napi.o napiu.o nxstack.o stptok.o nxdataset.o napi4.o napi5.o nxxml.o nxio.o libtool: link: ranlib .libs/libNeXus.a libtool: link: ( cd ".libs" && rm -f "libNeXus.la" && ln -s "../libNeXus.la" "libNeXus.la" ) make[2]: Leaving directory `/«PKGBUILDDIR»/src' Making all in bindings make[2]: Entering directory `/«PKGBUILDDIR»/bindings' Making all in cpp make[3]: Entering directory `/«PKGBUILDDIR»/bindings/cpp' /bin/bash ../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -prefer-pic -g -O2 -fno-strict-aliasing -MT NeXusFile.lo -MD -MP -MF .deps/NeXusFile.Tpo -c -o NeXusFile.lo NeXusFile.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -g -O2 -fno-strict-aliasing -MT NeXusFile.lo -MD -MP -MF .deps/NeXusFile.Tpo -c NeXusFile.cpp -fPIC -DPIC -o .libs/NeXusFile.o In file included from NeXusFile.cpp:6: In file included from ./NeXusFile.hpp:563: ./NeXusStream.hpp:120:118: warning: control may reach end of non-void function [-Wreturn-type] Attr& operator=(const Attr& a) { if (this != &a) { delete m_holder; m_holder = a.m_holder->clone(); return *this; } } ^ ./NeXusStream.hpp:248:118: warning: control may reach end of non-void function [-Wreturn-type] Data& operator=(const Data& d) { if (this != &d) { delete m_holder; m_holder = d.m_holder->clone(); return *this; } } ^ 2 warnings generated. libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -g -O2 -fno-strict-aliasing -MT NeXusFile.lo -MD -MP -MF .deps/NeXusFile.Tpo -c NeXusFile.cpp -fPIC -DPIC -o NeXusFile.o >/dev/null 2>&1 mv -f .deps/NeXusFile.Tpo .deps/NeXusFile.Plo /bin/bash ../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -prefer-pic -g -O2 -fno-strict-aliasing -MT NeXusException.lo -MD -MP -MF .deps/NeXusException.Tpo -c -o NeXusException.lo NeXusException.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -g -O2 -fno-strict-aliasing -MT NeXusException.lo -MD -MP -MF .deps/NeXusException.Tpo -c NeXusException.cpp -fPIC -DPIC -o .libs/NeXusException.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -g -O2 -fno-strict-aliasing -MT NeXusException.lo -MD -MP -MF .deps/NeXusException.Tpo -c NeXusException.cpp -fPIC -DPIC -o NeXusException.o >/dev/null 2>&1 mv -f .deps/NeXusException.Tpo .deps/NeXusException.Plo /bin/bash ../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -prefer-pic -g -O2 -fno-strict-aliasing -MT NeXusStream.lo -MD -MP -MF .deps/NeXusStream.Tpo -c -o NeXusStream.lo NeXusStream.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -g -O2 -fno-strict-aliasing -MT NeXusStream.lo -MD -MP -MF .deps/NeXusStream.Tpo -c NeXusStream.cpp -fPIC -DPIC -o .libs/NeXusStream.o In file included from NeXusStream.cpp:45: ./NeXusStream.hpp:120:118: warning: control may reach end of non-void function [-Wreturn-type] Attr& operator=(const Attr& a) { if (this != &a) { delete m_holder; m_holder = a.m_holder->clone(); return *this; } } ^ ./NeXusStream.hpp:248:118: warning: control may reach end of non-void function [-Wreturn-type] Data& operator=(const Data& d) { if (this != &d) { delete m_holder; m_holder = d.m_holder->clone(); return *this; } } ^ 2 warnings generated. libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIN_NEXUS_CPP_LIBRARY=1 -fno-common -g -O2 -fno-strict-aliasing -MT NeXusStream.lo -MD -MP -MF .deps/NeXusStream.Tpo -c NeXusStream.cpp -fPIC -DPIC -o NeXusStream.o >/dev/null 2>&1 mv -f .deps/NeXusStream.Tpo .deps/NeXusStream.Plo /bin/bash ../../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -prefer-pic -g -O2 -fno-strict-aliasing -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libNeXusCPP.la -rpath /usr/lib NeXusFile.lo NeXusException.lo NeXusStream.lo ../../src/libNeXus.la -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/crtbeginS.o .libs/NeXusFile.o .libs/NeXusException.o .libs/NeXusStream.o -D__LIBTOOL_IS_A_FOOL__ -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.so -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7 -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../.. -L/lib -lstdc++ -lm -lc -lgcc_s /usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/crtendS.o /usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o -O2 -Wl,-z -Wl,defs -Wl,-z -Wl,defs -Wl,-soname -Wl,libNeXusCPP.so.0 -o .libs/libNeXusCPP.so.0.0.0 -D__LIBTOOL_IS_A_FOOL__ -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.so -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7 -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/bin/../lib/gcc/x86_64-linux-gnu/4.7/../../.. -L/lib -lstdc++ -lm -lc -lgcc_s libtool: link: (cd ".libs" && rm -f "libNeXusCPP.so.0" && ln -s "libNeXusCPP.so.0.0.0" "libNeXusCPP.so.0") libtool: link: (cd ".libs" && rm -f "libNeXusCPP.so" && ln -s "libNeXusCPP.so.0.0.0" "libNeXusCPP.so") libtool: link: ar cru .libs/libNeXusCPP.a NeXusFile.o NeXusException.o NeXusStream.o libtool: link: ranlib .libs/libNeXusCPP.a libtool: link: ( cd ".libs" && rm -f "libNeXusCPP.la" && ln -s "../libNeXusCPP.la" "libNeXusCPP.la" ) make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/cpp' Making all in java make[3]: Entering directory `/«PKGBUILDDIR»/bindings/java' /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFException.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFJavaException.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFConstants.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFNativeData.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFArray.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFNotImplementedException.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . org/nexusformat/AttributeEntry.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . org/nexusformat/NexusException.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . org/nexusformat/NXlink.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . org/nexusformat/NeXusFileInterface.java /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . org/nexusformat/NexusFile.java Note: org/nexusformat/NexusFile.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. /usr/lib/jvm/java-6-openjdk-amd64/bin/jar cvf jnexus.jar ncsa/hdf/hdflib/HDFException.class ncsa/hdf/hdflib/HDFJavaException.class ncsa/hdf/hdflib/HDFConstants.class ncsa/hdf/hdflib/HDFNativeData.class ncsa/hdf/hdflib/HDFArray.class ncsa/hdf/hdflib/HDFNotImplementedException.class org/nexusformat/AttributeEntry.class org/nexusformat/NexusException.class org/nexusformat/NXlink.class org/nexusformat/NeXusFileInterface.class org/nexusformat/NexusFile.class \ ncsa/hdf/hdflib/ArrayDescriptor.class added manifest adding: ncsa/hdf/hdflib/HDFException.class(in = 749) (out= 430)(deflated 42%) adding: ncsa/hdf/hdflib/HDFJavaException.class(in = 643) (out= 381)(deflated 40%) adding: ncsa/hdf/hdflib/HDFConstants.class(in = 5354) (out= 2269)(deflated 57%) adding: ncsa/hdf/hdflib/HDFNativeData.class(in = 3501) (out= 1698)(deflated 51%) adding: ncsa/hdf/hdflib/HDFArray.class(in = 13915) (out= 5713)(deflated 58%) adding: ncsa/hdf/hdflib/HDFNotImplementedException.class(in = 699) (out= 421)(deflated 39%) adding: org/nexusformat/AttributeEntry.class(in = 254) (out= 204)(deflated 19%) adding: org/nexusformat/NexusException.class(in = 759) (out= 434)(deflated 42%) adding: org/nexusformat/NXlink.class(in = 388) (out= 278)(deflated 28%) adding: org/nexusformat/NeXusFileInterface.class(in = 1784) (out= 623)(deflated 65%) adding: org/nexusformat/NexusFile.class(in = 10518) (out= 4543)(deflated 56%) adding: ncsa/hdf/hdflib/ArrayDescriptor.class(in = 3821) (out= 2210)(deflated 42%) test -d native || mkdir native /usr/lib/jvm/java-6-openjdk-amd64/bin/javah -jni -d native -classpath . org.nexusformat.NexusFile /usr/bin/make all-am make[4]: Entering directory `/«PKGBUILDDIR»/bindings/java' /bin/bash ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-hdfnativeImp.lo -MD -MP -MF .deps/libjnexus_la-hdfnativeImp.Tpo -c -o libjnexus_la-hdfnativeImp.lo `test -f 'native/hdfnativeImp.c' || echo './'`native/hdfnativeImp.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-hdfnativeImp.lo -MD -MP -MF .deps/libjnexus_la-hdfnativeImp.Tpo -c native/hdfnativeImp.c -fPIC -DPIC -o .libs/libjnexus_la-hdfnativeImp.o native/hdfnativeImp.c:34:24: warning: '/*' within block comment [-Wcomment] /* #include "hdf.h" /* this only seems to be needed to define "intn" */ ^ 1 warning generated. libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-hdfnativeImp.lo -MD -MP -MF .deps/libjnexus_la-hdfnativeImp.Tpo -c native/hdfnativeImp.c -o libjnexus_la-hdfnativeImp.o >/dev/null 2>&1 mv -f .deps/libjnexus_la-hdfnativeImp.Tpo .deps/libjnexus_la-hdfnativeImp.Plo /bin/bash ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-hdfexceptionImp.lo -MD -MP -MF .deps/libjnexus_la-hdfexceptionImp.Tpo -c -o libjnexus_la-hdfexceptionImp.lo `test -f 'native/hdfexceptionImp.c' || echo './'`native/hdfexceptionImp.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-hdfexceptionImp.lo -MD -MP -MF .deps/libjnexus_la-hdfexceptionImp.Tpo -c native/hdfexceptionImp.c -fPIC -DPIC -o .libs/libjnexus_la-hdfexceptionImp.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-hdfexceptionImp.lo -MD -MP -MF .deps/libjnexus_la-hdfexceptionImp.Tpo -c native/hdfexceptionImp.c -o libjnexus_la-hdfexceptionImp.o >/dev/null 2>&1 mv -f .deps/libjnexus_la-hdfexceptionImp.Tpo .deps/libjnexus_la-hdfexceptionImp.Plo /bin/bash ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-handle.lo -MD -MP -MF .deps/libjnexus_la-handle.Tpo -c -o libjnexus_la-handle.lo `test -f 'native/handle.c' || echo './'`native/handle.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-handle.lo -MD -MP -MF .deps/libjnexus_la-handle.Tpo -c native/handle.c -fPIC -DPIC -o .libs/libjnexus_la-handle.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-handle.lo -MD -MP -MF .deps/libjnexus_la-handle.Tpo -c native/handle.c -o libjnexus_la-handle.o >/dev/null 2>&1 mv -f .deps/libjnexus_la-handle.Tpo .deps/libjnexus_la-handle.Plo /bin/bash ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-NexusFile.lo -MD -MP -MF .deps/libjnexus_la-NexusFile.Tpo -c -o libjnexus_la-NexusFile.lo `test -f 'native/NexusFile.c' || echo './'`native/NexusFile.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-NexusFile.lo -MD -MP -MF .deps/libjnexus_la-NexusFile.Tpo -c native/NexusFile.c -fPIC -DPIC -o .libs/libjnexus_la-NexusFile.o native/NexusFile.c:1260:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ 1 warning generated. libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../include -fno-common -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -MT libjnexus_la-NexusFile.lo -MD -MP -MF .deps/libjnexus_la-NexusFile.Tpo -c native/NexusFile.c -o libjnexus_la-NexusFile.o >/dev/null 2>&1 mv -f .deps/libjnexus_la-NexusFile.Tpo .deps/libjnexus_la-NexusFile.Plo /bin/bash ../../libtool --tag=CC --mode=link x86_64-linux-gnu-gcc -I../../include -Inative -I/usr/lib/jvm/java-6-openjdk-amd64/include -I/usr/lib/jvm/java-6-openjdk-amd64/include/linux -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -D_FILE_OFFSET_BITS=64 -fno-strict-aliasing -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libjnexus.la -rpath /usr/lib libjnexus_la-hdfnativeImp.lo libjnexus_la-hdfexceptionImp.lo libjnexus_la-handle.lo libjnexus_la-NexusFile.lo ../../src/libNeXus.la -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: x86_64-linux-gnu-gcc -shared -fPIC -DPIC .libs/libjnexus_la-hdfnativeImp.o .libs/libjnexus_la-hdfexceptionImp.o .libs/libjnexus_la-handle.o .libs/libjnexus_la-NexusFile.o -D__LIBTOOL_IS_A_FOOL__ -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.so -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -lm -Wl,-z -Wl,defs -Wl,-z -Wl,defs -Wl,-soname -Wl,libjnexus.so.0 -o .libs/libjnexus.so.0.0.0 -D__LIBTOOL_IS_A_FOOL__ -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.so -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -lm libtool: link: (cd ".libs" && rm -f "libjnexus.so.0" && ln -s "libjnexus.so.0.0.0" "libjnexus.so.0") libtool: link: (cd ".libs" && rm -f "libjnexus.so" && ln -s "libjnexus.so.0.0.0" "libjnexus.so") libtool: link: ar cru .libs/libjnexus.a libjnexus_la-hdfnativeImp.o libjnexus_la-hdfexceptionImp.o libjnexus_la-handle.o libjnexus_la-NexusFile.o libtool: link: ranlib .libs/libjnexus.a libtool: link: ( cd ".libs" && rm -f "libjnexus.la" && ln -s "../libjnexus.la" "libjnexus.la" ) CLASSPATH=.:./.${CLASSPATH:+":$CLASSPATH"} /usr/lib/jvm/java-6-openjdk-amd64/bin/javac -d . -classpath . ncsa/hdf/hdflib/HDFArray.java ncsa/hdf/hdflib/HDFConstants.java ncsa/hdf/hdflib/HDFException.java ncsa/hdf/hdflib/HDFJavaException.java ncsa/hdf/hdflib/HDFNativeData.java ncsa/hdf/hdflib/HDFNotImplementedException.java org/nexusformat/AttributeEntry.java org/nexusformat/NXlink.java org/nexusformat/NeXusFileInterface.java org/nexusformat/NexusException.java org/nexusformat/NexusFile.java test/TestJapi.java Note: org/nexusformat/NexusFile.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. echo timestamp > classnoinst.stamp /usr/lib/jvm/java-6-openjdk-amd64/bin/jar cvf jnexus.jar ncsa/hdf/hdflib/HDFException.class ncsa/hdf/hdflib/HDFJavaException.class ncsa/hdf/hdflib/HDFConstants.class ncsa/hdf/hdflib/HDFNativeData.class ncsa/hdf/hdflib/HDFArray.class ncsa/hdf/hdflib/HDFNotImplementedException.class org/nexusformat/AttributeEntry.class org/nexusformat/NexusException.class org/nexusformat/NXlink.class org/nexusformat/NeXusFileInterface.class org/nexusformat/NexusFile.class \ ncsa/hdf/hdflib/ArrayDescriptor.class added manifest adding: ncsa/hdf/hdflib/HDFException.class(in = 749) (out= 430)(deflated 42%) adding: ncsa/hdf/hdflib/HDFJavaException.class(in = 643) (out= 381)(deflated 40%) adding: ncsa/hdf/hdflib/HDFConstants.class(in = 5354) (out= 2269)(deflated 57%) adding: ncsa/hdf/hdflib/HDFNativeData.class(in = 3501) (out= 1698)(deflated 51%) adding: ncsa/hdf/hdflib/HDFArray.class(in = 13915) (out= 5713)(deflated 58%) adding: ncsa/hdf/hdflib/HDFNotImplementedException.class(in = 699) (out= 421)(deflated 39%) adding: org/nexusformat/AttributeEntry.class(in = 254) (out= 204)(deflated 19%) adding: org/nexusformat/NexusException.class(in = 759) (out= 434)(deflated 42%) adding: org/nexusformat/NXlink.class(in = 388) (out= 278)(deflated 28%) adding: org/nexusformat/NeXusFileInterface.class(in = 1784) (out= 623)(deflated 65%) adding: org/nexusformat/NexusFile.class(in = 10518) (out= 4543)(deflated 56%) adding: ncsa/hdf/hdflib/ArrayDescriptor.class(in = 3821) (out= 2210)(deflated 42%) test -d native || mkdir native /usr/lib/jvm/java-6-openjdk-amd64/bin/javah -jni -d native -classpath . org.nexusformat.NexusFile make[4]: Leaving directory `/«PKGBUILDDIR»/bindings/java' make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/java' Making all in python make[3]: Entering directory `/«PKGBUILDDIR»/bindings/python' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/«PKGBUILDDIR»/bindings/python' 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tree.o data.o data_writer.o ../../src/libNeXus.la -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z -Wl,defs -Wl,-z -Wl,defs -o nxdir main.o string_util.o tree.o data.o data_writer.o -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.a -lmxml -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -lm make[3]: Leaving directory `/«PKGBUILDDIR»/applications/NXdir' Making all in NXtranslate make[3]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate' Making all in IPNS_CPP make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/IPNS_CPP' /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -DIPNS_LITTLE_ENDIAN -fno-common -g -O2 -fno-strict-aliasing -MT Header.lo -MD -MP -MF .deps/Header.Tpo -c -o Header.lo Header.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H 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x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libTextXML.la xml_retriever.lo xml_retriever_dom.lo void_copy.lo -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: ar cru .libs/libTextXML.a .libs/xml_retriever.o .libs/xml_retriever_dom.o .libs/void_copy.o libtool: link: ranlib .libs/libTextXML.a libtool: link: ( cd ".libs" && rm -f "libTextXML.la" && ln -s "../libTextXML.la" "libTextXML.la" ) make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/text_xml' Making all in sns_histogram make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/sns_histogram' /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT string_location_format.lo -MD -MP -MF .deps/string_location_format.Tpo -c -o string_location_format.lo string_location_format.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT string_location_format.lo -MD -MP -MF .deps/string_location_format.Tpo -c string_location_format.cpp -fPIC -DPIC -o .libs/string_location_format.o In file included from string_location_format.cpp:1: ./string_location_format.h:32:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ ./string_location_format.h:119:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ string_location_format.cpp:86:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ string_location_format.cpp:331:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ 4 warnings generated. libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT string_location_format.lo -MD -MP -MF .deps/string_location_format.Tpo -c string_location_format.cpp -o string_location_format.o >/dev/null 2>&1 mv -f .deps/string_location_format.Tpo .deps/string_location_format.Plo /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT SNS_retriever.lo -MD -MP -MF .deps/SNS_retriever.Tpo -c -o SNS_retriever.lo SNS_retriever.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT SNS_retriever.lo -MD -MP -MF .deps/SNS_retriever.Tpo -c SNS_retriever.cpp -fPIC -DPIC -o .libs/SNS_retriever.o In file included from SNS_retriever.cpp:1: In file included from ./retriever.hpp:15: ./string_location_format.h:32:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ ./string_location_format.h:119:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ SNS_retriever.cpp:15:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ SNS_retriever.cpp:28:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ SNS_retriever.cpp:156:1: warning: '/*' within block comment [-Wcomment] /*********************************/ ^ 5 warnings generated. libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT SNS_retriever.lo -MD -MP -MF .deps/SNS_retriever.Tpo -c SNS_retriever.cpp -o SNS_retriever.o >/dev/null 2>&1 mv -f .deps/SNS_retriever.Tpo .deps/SNS_retriever.Plo /bin/bash ../../../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libSNShistogram.la string_location_format.lo SNS_retriever.lo -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: ar cru .libs/libSNShistogram.a .libs/string_location_format.o .libs/SNS_retriever.o libtool: link: ranlib .libs/libSNShistogram.a libtool: link: ( cd ".libs" && rm -f "libSNShistogram.la" && ln -s "../libSNShistogram.la" "libSNShistogram.la" ) make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/sns_histogram' Making all in docs make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/docs' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/docs' Making all in FRM2 make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/FRM2' /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT frm2_retriever.lo -MD -MP -MF .deps/frm2_retriever.Tpo -c -o frm2_retriever.lo frm2_retriever.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT frm2_retriever.lo -MD -MP -MF .deps/frm2_retriever.Tpo -c frm2_retriever.cpp -fPIC -DPIC -o .libs/frm2_retriever.o frm2_retriever.cpp:139:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["angstrm"] = NXunits::angstrom; ^ frm2_retriever.cpp:140:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["ngstrm"] = NXunits::angstrom; ^ frm2_retriever.cpp:154:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["invangstrm"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:155:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["inverse angstrm"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:156:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["angstrm^-1"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:157:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["angstrm-1"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:158:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["invngstrm"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:159:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["inverse ngstrm"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:160:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["ngstrm-1"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:161:15: warning: illegal character encoding in string literal [-Winvalid-source-encoding] unit_strings["ngstrm^-1"] = NXunits::inverse_angstrom; ^ frm2_retriever.cpp:1518:24: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] if (arg.find("Omat")>=0) { ~~~~~~~~~~~~~~~~^ ~ frm2_retriever.cpp:1626:38: warning: more '%' conversions than data arguments [-Wformat] printf("vl:%f, xyz: %f %f %f, psi:%f\n", vl, xyz[0], xyz[1], xyz[2]); ~^ 12 warnings generated. libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT frm2_retriever.lo -MD -MP -MF .deps/frm2_retriever.Tpo -c frm2_retriever.cpp -o frm2_retriever.o >/dev/null 2>&1 mv -f .deps/frm2_retriever.Tpo .deps/frm2_retriever.Plo /bin/bash ../../../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libFRM2.la frm2_retriever.lo -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: ar cru .libs/libFRM2.a .libs/frm2_retriever.o libtool: link: ranlib .libs/libFRM2.a libtool: link: ( cd ".libs" && rm -f "libFRM2.la" && ln -s "../libFRM2.la" "libFRM2.la" ) make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/FRM2' 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-L/usr/lib -L/usr/local/lib -o libLoopy.la retriever.lo -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: ar cru .libs/libLoopy.a .libs/retriever.o libtool: link: ranlib .libs/libLoopy.a libtool: link: ( cd ".libs" && rm -f "libLoopy.la" && ln -s "../libLoopy.la" "libLoopy.la" ) make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/loopy' Making all in binary make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/binary' /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -I../../../applications/NXtranslate -fno-common -g -O2 -fno-strict-aliasing -MT BinaryRetriever.lo -MD -MP -MF .deps/BinaryRetriever.Tpo -c -o BinaryRetriever.lo BinaryRetriever.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -I../../../applications/NXtranslate -fno-common -g -O2 -fno-strict-aliasing -MT BinaryRetriever.lo -MD -MP 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-ldl -lm libtool: link: ar cru .libs/libSpec.a .libs/SPEClib.o .libs/spec_retriever.o libtool: link: ranlib .libs/libSpec.a libtool: link: ( cd ".libs" && rm -f "libSpec.la" && ln -s "../libSpec.la" "libSpec.la" ) make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/spec' Making all in esrf_edf make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate/esrf_edf' /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT edf_reader.lo -MD -MP -MF .deps/edf_reader.Tpo -c -o edf_reader.lo edf_reader.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT edf_reader.lo -MD -MP -MF .deps/edf_reader.Tpo -c edf_reader.cpp -fPIC -DPIC -o .libs/edf_reader.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT edf_reader.lo -MD -MP -MF .deps/edf_reader.Tpo -c edf_reader.cpp -o edf_reader.o >/dev/null 2>&1 mv -f .deps/edf_reader.Tpo .deps/edf_reader.Plo /bin/bash ../../../libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT edf_retriever.lo -MD -MP -MF .deps/edf_retriever.Tpo -c -o edf_retriever.lo edf_retriever.cpp libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT edf_retriever.lo -MD -MP -MF .deps/edf_retriever.Tpo -c edf_retriever.cpp -fPIC -DPIC -o .libs/edf_retriever.o libtool: compile: x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../include -I. -I../../../include -fno-common -g -O2 -fno-strict-aliasing -MT edf_retriever.lo -MD -MP -MF .deps/edf_retriever.Tpo -c edf_retriever.cpp -o edf_retriever.o >/dev/null 2>&1 mv -f .deps/edf_retriever.Tpo .deps/edf_retriever.Plo /bin/bash ../../../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o libEdf.la edf_reader.lo edf_retriever.lo -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: ar cru .libs/libEdf.a .libs/edf_reader.o .libs/edf_retriever.o libtool: link: ranlib .libs/libEdf.a libtool: link: ( cd ".libs" && rm -f "libEdf.la" && ln -s "../libEdf.la" "libEdf.la" ) make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate/esrf_edf' make[4]: Entering directory `/«PKGBUILDDIR»/applications/NXtranslate' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT attr.o -MD -MP -MF .deps/attr.Tpo -c -o attr.o attr.cpp mv -f .deps/attr.Tpo .deps/attr.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp mv -f .deps/main.Tpo .deps/main.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT nexus_retriever.o -MD -MP -MF .deps/nexus_retriever.Tpo -c -o nexus_retriever.o nexus_retriever.cpp mv -f .deps/nexus_retriever.Tpo .deps/nexus_retriever.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT nexus_util.o -MD -MP -MF .deps/nexus_util.Tpo -c -o nexus_util.o nexus_util.cpp mv -f .deps/nexus_util.Tpo .deps/nexus_util.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT node.o -MD -MP -MF .deps/node.Tpo -c -o node.o node.cpp mv -f .deps/node.Tpo .deps/node.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT node_util.o -MD -MP -MF .deps/node_util.Tpo -c -o node_util.o node_util.cpp mv -f .deps/node_util.Tpo .deps/node_util.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT retriever.o -MD -MP -MF .deps/retriever.Tpo -c -o retriever.o retriever.cpp mv -f .deps/retriever.Tpo .deps/retriever.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT string_util.o -MD -MP -MF .deps/string_util.Tpo -c -o string_util.o string_util.cpp mv -f .deps/string_util.Tpo .deps/string_util.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT xml_parser.o -MD -MP -MF .deps/xml_parser.Tpo -c -o xml_parser.o xml_parser.cpp xml_parser.cpp:357:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 1 warning generated. mv -f .deps/xml_parser.Tpo .deps/xml_parser.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT xml_util.o -MD -MP -MF .deps/xml_util.Tpo -c -o xml_util.o xml_util.cpp mv -f .deps/xml_util.Tpo .deps/xml_util.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include -DIPNS_RETRIEVER -DFRM2_RETRIEVER -DTEXT_COLLIST_RETRIEVER -DTEXT_PLAIN_RETRIEVER -DTEXT_XML_RETRIEVER -DDYNAMIC_RETRIEVER -DSNS_HISTOGRAM_RETRIEVER -DLOOPY_RETRIEVER -DBINARY_RETRIEVER -DEDF_RETRIEVER -DSPEC_RETRIEVER `xml2-config --cflags` -I/usr/include/hdf -DHDF4 -I/usr/include -DHDF5 -DH5_USE_16_API -I/usr/include -DNXXML -fno-common -g -O2 -fno-strict-aliasing -MT dynamic_retriever.o -MD -MP -MF .deps/dynamic_retriever.Tpo -c -o dynamic_retriever.o dynamic_retriever.cpp mv -f .deps/dynamic_retriever.Tpo .deps/dynamic_retriever.Po /bin/bash ../../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -static -L/usr/lib/ -lmfhdf -ldf -L/usr/lib -lhdf5 -lz -L/usr/lib -lmxml -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o nxtranslate attr.o main.o nexus_retriever.o nexus_util.o node.o node_util.o retriever.o string_util.o xml_parser.o xml_util.o dynamic_retriever.o ../../src/libNeXus.la -lxml2 IPNS_CPP/libIPNSRunfile.la text_collist/libTextCollist.la text_plain/libTextPlain.la text_xml/libTextXML.la sns_histogram/libSNShistogram.la FRM2/libFRM2.la loopy/libLoopy.la binary/libBinaryRetriever.la spec/libSpec.la esrf_edf/libEdf.la -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z -Wl,defs -Wl,-z -Wl,defs -o nxtranslate attr.o main.o nexus_retriever.o nexus_util.o node.o node_util.o retriever.o string_util.o xml_parser.o xml_util.o dynamic_retriever.o -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.a -lmxml IPNS_CPP/.libs/libIPNSRunfile.a text_collist/.libs/libTextCollist.a text_plain/.libs/libTextPlain.a text_xml/.libs/libTextXML.a sns_histogram/.libs/libSNShistogram.a FRM2/.libs/libFRM2.a loopy/.libs/libLoopy.a binary/.libs/libBinaryRetriever.a spec/.libs/libSpec.a esrf_edf/.libs/libEdf.a -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -lm make[4]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate' make[3]: Leaving directory `/«PKGBUILDDIR»/applications/NXtranslate' Making all in NXsummary make[3]: Entering directory `/«PKGBUILDDIR»/applications/NXsummary' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include `xml2-config --cflags` -fno-common -g -O2 -fno-strict-aliasing -MT data_util.o -MD -MP -MF .deps/data_util.Tpo -c -o data_util.o data_util.cpp mv -f .deps/data_util.Tpo .deps/data_util.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include `xml2-config --cflags` -fno-common -g -O2 -fno-strict-aliasing -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp In file included from main.cpp:39: ./tclap/CmdLine.h:302:3: warning: delete called on 'TCLAP::CmdLineOutput' that is abstract but has non-virtual destructor [-Wdelete-non-virtual-dtor] delete _output; ^ 1 warning generated. mv -f .deps/main.Tpo .deps/main.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include `xml2-config --cflags` -fno-common -g -O2 -fno-strict-aliasing -MT string_util.o -MD -MP -MF .deps/string_util.Tpo -c -o string_util.o string_util.cpp mv -f .deps/string_util.Tpo .deps/string_util.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include `xml2-config --cflags` -fno-common -g -O2 -fno-strict-aliasing -MT preferences.o -MD -MP -MF .deps/preferences.Tpo -c -o preferences.o preferences.cpp mv -f .deps/preferences.Tpo .deps/preferences.Po x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../include -I. -I../../include `xml2-config --cflags` -fno-common -g -O2 -fno-strict-aliasing -MT output.o -MD -MP -MF .deps/output.Tpo -c -o output.o output.cpp mv -f .deps/output.Tpo .deps/output.Po /bin/bash ../../libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -static -L/usr/lib/ -lmfhdf -ldf -L/usr/lib -lhdf5 -lz -L/usr/lib -lmxml -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -Wl,-z,defs -L/usr/lib/ -L/usr/lib -L/usr/local/lib -o nxsummary data_util.o main.o string_util.o preferences.o output.o ../../src/libNeXus.la -lxml2 -lhdf5 -lmfhdf -ldf -ljpeg -lz -lpthread -ldl -lm libtool: link: x86_64-linux-gnu-g++ -g -O2 -fno-strict-aliasing -Wl,-z -Wl,defs -Wl,-z -Wl,defs -o nxsummary data_util.o main.o string_util.o preferences.o output.o -L/usr/lib/ -L/usr/lib -L/usr/local/lib ../../src/.libs/libNeXus.a -lmxml -lxml2 -lhdf5 /usr/lib/libmfhdf.so /usr/lib/libdf.so -ljpeg -lz -lpthread -ldl -lm data_util.o: In function `nxsum::operateData(std::string const&, void const*, int const*, int, int, std::string const&)': /«PKGBUILDDIR»/applications/NXsummary/data_util.cpp:329: undefined reference to `std::string nxsum::toString(double)' /«PKGBUILDDIR»/applications/NXsummary/data_util.cpp:324: undefined reference to `std::string nxsum::toString(float)' /«PKGBUILDDIR»/applications/NXsummary/data_util.cpp:280: undefined reference to `std::string nxsum::toString(double)' /«PKGBUILDDIR»/applications/NXsummary/data_util.cpp:276: undefined reference to `std::string nxsum::toString(float)' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[3]: *** [nxsummary] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/applications/NXsummary' make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [build-stamp] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 make[2]: Leaving directory `/«PKGBUILDDIR»/applications' make[1]: Leaving directory `/«PKGBUILDDIR»' ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120623-1624 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 85396 Build-Time: 162 Distribution: unstable Fail-Stage: build Install-Time: 42 Job: nexus_4.2.1-svn1614-1 Package: nexus Package-Time: 227 Source-Version: 4.2.1-svn1614-1 Space: 85396 Status: attempted Version: 4.2.1-svn1614-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20120623-1624 Build needed 00:03:47, 85396k disc space DC-Status: Failed 227.602145s