DC-Build-Header: rdkit 201203-3 / Sat Feb 02 02:09:50 +0000 2013 DC-Task: logfile:/tmp/rdkit_201203-3_unstable_clang.log version:201203-3 modes:binary-only:clang chroot:unstable source:rdkit esttime:3892 architecture:any DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang rdkit_201203-3' Could not create '/sbuild-nonexistent/logs': No such file or directory Could not create '/sbuild-nonexistent/logs': No such file or directory sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on ip-10-157-6-66.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rdkit 201203-3 (amd64) 02 Feb 2013 02:09 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rdkit Version: 201203-3 Source Version: 201203-3 Distribution: unstable Architecture: amd64 I: NOTICE: Log filtering will replace 'build/rdkit-k7RAQt/rdkit-201203' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rdkit-k7RAQt' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-8ad57dc3-9f56-4b0a-80f2-6a6e993fd2e9' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Ign http://localhost unstable InRelease Get:1 http://localhost unstable Release.gpg [836 B] Get:2 http://localhost unstable Release [227 kB] Ign http://localhost unstable/main Sources/DiffIndex Ign http://localhost unstable/main amd64 Packages/DiffIndex Get:3 http://localhost unstable/main Translation-en/DiffIndex [7876 B] Get:4 http://localhost unstable/main 2013-02-01-2012.11.pdiff [40 B] Get:5 http://localhost unstable/main 2013-02-01-2012.11.pdiff [40 B] Get:6 http://localhost unstable/main Sources [8235 kB] Get:7 http://localhost unstable/main amd64 Packages [8278 kB] Fetched 16.7 MB in 3s (4916 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'rdkit' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debichem/unstable/rdkit/ Need to get 11.2 MB of source archives. Get:1 http://localhost/debian/ unstable/main rdkit 201203-3 (dsc) [1585 B] Get:2 http://localhost/debian/ unstable/main rdkit 201203-3 (tar) [11.2 MB] Get:3 http://localhost/debian/ unstable/main rdkit 201203-3 (diff) [11.8 kB] Fetched 11.2 MB in 0s (17.2 MB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Add an unstable version of clang as repository' Add an unstable version of clang as repository + echo deb http://clang.ecranbleu.org/apt/debian unstable main + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Ign http://localhost unstable/main Sources/DiffIndex Ign http://clang.ecranbleu.org unstable InRelease Ign http://clang.ecranbleu.org unstable Release.gpg Ign http://localhost unstable/main amd64 Packages/DiffIndex Get:1 http://clang.ecranbleu.org unstable Release [1616 B] Hit http://localhost unstable/main Translation-en/DiffIndex Hit http://localhost unstable/main Sources Hit http://localhost unstable/main amd64 Packages Get:2 http://clang.ecranbleu.org unstable/main amd64 Packages [2354 B] Ign http://clang.ecranbleu.org unstable/main Translation-en Fetched 3970 B in 1s (2312 B/s) Reading package lists... + echo 'Install of clang' Install of clang + apt-get update Ign http://localhost unstable InRelease Hit http://localhost unstable Release.gpg Hit http://localhost unstable Release Ign http://clang.ecranbleu.org unstable InRelease Ign http://localhost unstable/main Sources/DiffIndex Ign http://clang.ecranbleu.org unstable Release.gpg Ign http://localhost unstable/main amd64 Packages/DiffIndex Hit http://clang.ecranbleu.org unstable Release Ign http://clang.ecranbleu.org unstable/main amd64 Packages/DiffIndex Hit http://localhost unstable/main Translation-en/DiffIndex Hit http://localhost unstable/main Sources Hit http://localhost unstable/main amd64 Packages Hit http://clang.ecranbleu.org unstable/main amd64 Packages Ign http://clang.ecranbleu.org unstable/main Translation-en Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: clang-3.2 compiler-rt libclang-common-dev libexpat1 libffi5 libllvm3.2 libncursesw5 libsqlite3-0 libssl1.0.0 mime-support python python-minimal python2.7 python2.7-minimal Suggested packages: python-doc python-tk python2.7-doc binfmt-support Recommended packages: llvm-3.2-dev file The following NEW packages will be installed: clang clang-3.2 compiler-rt libclang-common-dev libexpat1 libffi5 libllvm3.2 libncursesw5 libsqlite3-0 libssl1.0.0 mime-support python python-minimal python2.7 python2.7-minimal 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 25.3 MB of archives. After this operation, 70.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libclang-common-dev compiler-rt clang-3.2 clang Get:1 http://localhost/debian/ unstable/main libncursesw5 amd64 5.9-10 [141 kB] Get:2 http://localhost/debian/ unstable/main libssl1.0.0 amd64 1.0.1c-4 [1213 kB] Get:3 http://localhost/debian/ unstable/main libsqlite3-0 amd64 3.7.15.2-1 [463 kB] Get:4 http://localhost/debian/ unstable/main libexpat1 amd64 2.1.0-1 [141 kB] Get:5 http://localhost/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:6 http://localhost/debian/ unstable/main libllvm3.2 amd64 3.2-2 [7865 kB] Get:7 http://clang.ecranbleu.org/apt/debian/ unstable/main libclang-common-dev amd64 3.2-2 [303 kB] Get:8 http://localhost/debian/ unstable/main mime-support all 3.52-2 [35.2 kB] Get:9 http://localhost/debian/ unstable/main python2.7-minimal amd64 2.7.3-6 [1783 kB] Get:10 http://localhost/debian/ unstable/main python2.7 amd64 2.7.3-6 [2729 kB] Get:11 http://localhost/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB] Get:12 http://localhost/debian/ unstable/main python all 2.7.3-3 [179 kB] Get:13 http://clang.ecranbleu.org/apt/debian/ unstable/main compiler-rt amd64 3.2-2 [312 kB] Get:14 http://clang.ecranbleu.org/apt/debian/ unstable/main clang-3.2 amd64 3.2-2 [10.0 MB] Get:15 http://clang.ecranbleu.org/apt/debian/ unstable/main clang all 3.2-2 [9558 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.3 MB in 3s (7008 kB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 13484 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-4_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.15.2-1_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ... Selecting previously unselected package libffi5:amd64. Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libllvm3.2:amd64. Unpacking libllvm3.2:amd64 (from .../libllvm3.2_3.2-2_amd64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ... Selecting previously unselected package python2.7-minimal. Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-6_amd64.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.3-6_amd64.deb) ... Selecting previously unselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.3-3_all.deb) ... Selecting previously unselected package libclang-common-dev. Unpacking libclang-common-dev (from .../libclang-common-dev_3.2-2_amd64.deb) ... Selecting previously unselected package compiler-rt. Unpacking compiler-rt (from .../compiler-rt_3.2-2_amd64.deb) ... Selecting previously unselected package clang-3.2. Unpacking clang-3.2 (from .../clang-3.2_3.2-2_amd64.deb) ... Selecting previously unselected package clang. Unpacking clang (from .../archives/clang_3.2-2_all.deb) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libssl1.0.0:amd64 (1.0.1c-4) ... debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype Setting up libsqlite3-0:amd64 (3.7.15.2-1) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libllvm3.2:amd64 (3.2-2) ... Setting up mime-support (3.52-2) ... Setting up python2.7-minimal (2.7.3-6) ... Linking and byte-compiling packages for runtime python2.7... Setting up python2.7 (2.7.3-6) ... Setting up python-minimal (2.7.3-3) ... Setting up python (2.7.3-3) ... Setting up libclang-common-dev (3.2-2) ... Setting up compiler-rt (3.2-2) ... Setting up clang-3.2 (3.2-2) ... Setting up clang (3.2-2) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7' + cd /usr/bin + for VERSION in '$VERSIONS' + rm g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Jku4Xi/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/710 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14662 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), cmake, flex, bison, python-support, python-dev, python-numpy, libsqlite3-dev, libboost-dev, libboost-regex-dev, libboost-python-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), cmake, flex, bison, python-support, python-dev, python-numpy, libsqlite3-dev, libboost-dev, libboost-regex-dev, libboost-python-dev dpkg-deb: building package `sbuild-build-depends-rdkit-dummy' in `/«BUILDDIR»/resolver-T6HG3s/apt_archive/sbuild-build-depends-rdkit-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rdkit build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bison bsdmainutils cmake cmake-data debhelper emacsen-common file flex gccxml gettext gettext-base groff-base html2text intltool-debian libarchive12 libasprintf-dev libasprintf0c2 libbison-dev libblas3 libblas3gf libboost-dev libboost-python-dev libboost-python1.49-dev libboost-python1.49.0 libboost-regex-dev libboost-regex1.49-dev libboost-regex1.49.0 libboost1.49-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1-dev libgcrypt11 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libicu-dev libicu48 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapack3gf libldap-2.4-2 libmagic1 libnettle4 libp11-kit0 libpcre3 libpipeline1 libprocps0 libpython2.7 librtmp0 libsasl2-2 libsigsegv2 libsqlite3-dev libssh2-1 libssl-dev libtasn1-3 libunistring0 libxml2 libxmlrpc-core-c3 m4 man-db po-debconf procps python-dev python-numpy python-support python2.7-dev zlib1g-dev Suggested packages: bison-doc wamerican wordlist whois vacation dh-make gettext-doc groff libboost-doc libboost1.49-doc python3 libboost-chrono1.49-dev libboost-date-time1.49-dev libboost-filesystem1.49-dev libboost-graph-parallel1.49-dev libboost-graph1.49-dev libboost-iostreams1.49-dev libboost-locale1.49-dev libboost-math1.49-dev libboost-mpi1.49-dev libboost-program-options1.49-dev libboost-random1.49-dev libboost-serialization1.49-dev libboost-signals1.49-dev libboost-system1.49-dev libboost-test1.49-dev libboost-thread1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop rng-tools krb5-doc krb5-user icu-doc sqlite3-doc less www-browser libmail-box-perl python-numpy-doc python-numpy-dbg python-nose gfortran Recommended packages: curl wget lynx-cur autopoint ca-certificates libglib2.0-data shared-mime-info krb5-locales libsasl2-modules libssl-doc xml-core libmail-sendmail-perl psmisc The following NEW packages will be installed: bison bsdmainutils cmake cmake-data debhelper emacsen-common file flex gccxml gettext gettext-base groff-base html2text intltool-debian libarchive12 libasprintf-dev libasprintf0c2 libbison-dev libblas3 libblas3gf libboost-dev libboost-python-dev libboost-python1.49-dev libboost-python1.49.0 libboost-regex-dev libboost-regex1.49-dev libboost-regex1.49.0 libboost1.49-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1-dev libgcrypt11 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libicu-dev libicu48 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapack3gf libldap-2.4-2 libmagic1 libnettle4 libp11-kit0 libpcre3 libpipeline1 libprocps0 libpython2.7 librtmp0 libsasl2-2 libsigsegv2 libsqlite3-dev libssh2-1 libssl-dev libtasn1-3 libunistring0 libxml2 libxmlrpc-core-c3 m4 man-db po-debconf procps python-dev python-numpy python-support python2.7-dev sbuild-build-depends-rdkit-dummy zlib1g-dev 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 82.1 MB/82.1 MB of archives. After this operation, 286 MB of additional disk space will be used. Get:1 http://localhost/debian/ unstable/main libpipeline1 amd64 1.2.2-1 [39.9 kB] Get:2 http://localhost/debian/ unstable/main libprocps0 amd64 1:3.3.4-2 [58.6 kB] Get:3 http://localhost/debian/ unstable/main groff-base amd64 1.22.1-2 [741 kB] Get:4 http://localhost/debian/ unstable/main bsdmainutils amd64 9.0.4 [210 kB] Get:5 http://localhost/debian/ unstable/main man-db amd64 2.6.3-3 [898 kB] Get:6 http://localhost/debian/ unstable/main libasprintf0c2 amd64 0.18.1.1-10 [27.2 kB] Get:7 http://localhost/debian/ unstable/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:8 http://localhost/debian/ unstable/main libgcrypt11 amd64 1.5.0-3 [298 kB] Get:9 http://localhost/debian/ unstable/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:10 http://localhost/debian/ unstable/main libtasn1-3 amd64 2.13-2 [67.7 kB] Get:11 http://localhost/debian/ unstable/main libgnutls26 amd64 2.12.20-3 [618 kB] Get:12 http://localhost/debian/ unstable/main libkeyutils1 amd64 1.5.5-4 [8690 B] Get:13 http://localhost/debian/ unstable/main libkrb5support0 amd64 1.10.1+dfsg-3 [49.2 kB] Get:14 http://localhost/debian/ unstable/main libk5crypto3 amd64 1.10.1+dfsg-3 [112 kB] Get:15 http://localhost/debian/ unstable/main libkrb5-3 amd64 1.10.1+dfsg-3 [394 kB] Get:16 http://localhost/debian/ unstable/main libgssapi-krb5-2 amd64 1.10.1+dfsg-3 [148 kB] Get:17 http://localhost/debian/ unstable/main libidn11 amd64 1.25-2 [178 kB] Get:18 http://localhost/debian/ unstable/main libsasl2-2 amd64 2.1.25.dfsg1-6 [120 kB] Get:19 http://localhost/debian/ unstable/main libldap-2.4-2 amd64 2.4.31-1 [243 kB] Get:20 http://localhost/debian/ unstable/main libmagic1 amd64 5.11-2 [202 kB] Get:21 http://localhost/debian/ unstable/main libpcre3 amd64 1:8.31-2 [247 kB] Get:22 http://localhost/debian/ unstable/main libxml2 amd64 2.8.0+dfsg1-7 [903 kB] Get:23 http://localhost/debian/ unstable/main libsigsegv2 amd64 2.9-4 [28.9 kB] Get:24 http://localhost/debian/ unstable/main m4 amd64 1.4.16-4 [260 kB] Get:25 http://localhost/debian/ unstable/main flex amd64 2.5.35-10.1 [332 kB] Get:26 http://localhost/debian/ unstable/main libnettle4 amd64 2.4-3 [149 kB] Get:27 http://localhost/debian/ unstable/main libarchive12 amd64 3.0.4-2 [303 kB] Get:28 http://localhost/debian/ unstable/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:29 http://localhost/debian/ unstable/main libcroco3 amd64 0.6.6-2 [134 kB] Get:30 http://localhost/debian/ unstable/main librtmp0 amd64 2.4+20111222.git4e06e21-1 [62.3 kB] Get:31 http://localhost/debian/ unstable/main libssh2-1 amd64 1.4.2-1.1 [133 kB] Get:32 http://localhost/debian/ unstable/main libcurl3 amd64 7.28.0-3 [331 kB] Get:33 http://localhost/debian/ unstable/main libcurl3-gnutls amd64 7.28.0-3 [322 kB] Get:34 http://localhost/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:35 http://localhost/debian/ unstable/main libgettextpo0 amd64 0.18.1.1-10 [145 kB] Get:36 http://localhost/debian/ unstable/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:37 http://localhost/debian/ unstable/main libicu48 amd64 4.8.1.1-10 [4741 kB] Get:38 http://localhost/debian/ unstable/main procps amd64 1:3.3.4-2 [259 kB] Get:39 http://localhost/debian/ unstable/main file amd64 5.11-2 [51.8 kB] Get:40 http://localhost/debian/ unstable/main gettext-base amd64 0.18.1.1-10 [154 kB] Get:41 http://localhost/debian/ unstable/main python-support all 1.0.15 [33.6 kB] Get:42 http://localhost/debian/ unstable/main libbison-dev amd64 2:2.5.dfsg-3 [289 kB] Get:43 http://localhost/debian/ unstable/main bison amd64 2:2.5.dfsg-3 [688 kB] Get:44 http://localhost/debian/ unstable/main libxmlrpc-core-c3 amd64 1.16.33-3.2 [186 kB] Get:45 http://localhost/debian/ unstable/main emacsen-common all 2.0.5 [20.9 kB] Get:46 http://localhost/debian/ unstable/main cmake-data all 2.8.9-1 [1359 kB] Get:47 http://localhost/debian/ unstable/main cmake amd64 2.8.9-1 [4730 kB] Get:48 http://localhost/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB] Get:49 http://localhost/debian/ unstable/main libasprintf-dev amd64 0.18.1.1-10 [26.8 kB] Get:50 http://localhost/debian/ unstable/main libgettextpo-dev amd64 0.18.1.1-10 [184 kB] Get:51 http://localhost/debian/ unstable/main gettext amd64 0.18.1.1-10 [1815 kB] Get:52 http://localhost/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:53 http://localhost/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:54 http://localhost/debian/ unstable/main debhelper all 9.20120909 [705 kB] Get:55 http://localhost/debian/ unstable/main gccxml amd64 0.9.0+cvs20120420-4 [4337 kB] Get:56 http://localhost/debian/ unstable/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:57 http://localhost/debian/ unstable/main libblas3gf all 1.2.20110419-5 [8090 B] Get:58 http://localhost/debian/ unstable/main libboost1.49-dev amd64 1.49.0-3.1 [9203 kB] Get:59 http://localhost/debian/ unstable/main libboost-dev amd64 1.49.0.1 [3022 B] Get:60 http://localhost/debian/ unstable/main libboost-python1.49.0 amd64 1.49.0-3.1 [359 kB] Get:61 http://localhost/debian/ unstable/main libpython2.7 amd64 2.7.3-6 [1208 kB] Get:62 http://localhost/debian/ unstable/main libexpat1-dev amd64 2.1.0-1 [229 kB] Get:63 http://localhost/debian/ unstable/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] Get:64 http://localhost/debian/ unstable/main libssl-dev amd64 1.0.1c-4 [1698 kB] Get:65 http://localhost/debian/ unstable/main python2.7-dev amd64 2.7.3-6 [22.8 MB] Get:66 http://localhost/debian/ unstable/main python-dev all 2.7.3-3 [916 B] Get:67 http://localhost/debian/ unstable/main libboost-python1.49-dev amd64 1.49.0-3.1 [504 kB] Get:68 http://localhost/debian/ unstable/main libboost-python-dev amd64 1.49.0.1 [3108 B] Get:69 http://localhost/debian/ unstable/main libboost-regex1.49.0 amd64 1.49.0-3.1 [449 kB] Get:70 http://localhost/debian/ unstable/main libicu-dev amd64 4.8.1.1-10 [5710 kB] Get:71 http://localhost/debian/ unstable/main libboost-regex1.49-dev amd64 1.49.0-3.1 [661 kB] Get:72 http://localhost/debian/ unstable/main libboost-regex-dev amd64 1.49.0.1 [2970 B] Get:73 http://localhost/debian/ unstable/main liblapack3 amd64 3.4.1-6 [5036 kB] Get:74 http://localhost/debian/ unstable/main liblapack3gf all 3.4.1-6 [10.2 kB] Get:75 http://localhost/debian/ unstable/main libsqlite3-dev amd64 3.7.15.2-1 [589 kB] Get:76 http://localhost/debian/ unstable/main python-numpy amd64 1:1.6.2-1 [2631 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.1 MB in 2s (30.6 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 14662 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-1_amd64.deb) ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.4-2_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.1-2_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.4_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. 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Selecting previously unselected package libsqlite3-dev. Unpacking libsqlite3-dev (from .../libsqlite3-dev_3.7.15.2-1_amd64.deb) ... Selecting previously unselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.6.2-1_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-rdkit-dummy. Unpacking sbuild-build-depends-rdkit-dummy (from .../sbuild-build-depends-rdkit-dummy.deb) ... Processing triggers for mime-support ... Setting up libpipeline1:amd64 (1.2.2-1) ... Setting up libprocps0:amd64 (1:3.3.4-2) ... Setting up groff-base (1.22.1-2) ... Setting up bsdmainutils (9.0.4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up libasprintf0c2:amd64 (0.18.1.1-10) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-3) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-3) ... Setting up libkeyutils1:amd64 (1.5.5-4) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-3) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-3) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-3) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6) ... Setting up libldap-2.4-2:amd64 (2.4.31-1) ... Setting up libmagic1:amd64 (5.11-2) ... Setting up libpcre3:amd64 (1:8.31-2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7) ... Setting up libsigsegv2 (2.9-4) ... Setting up m4 (1.4.16-4) ... Setting up flex (2.5.35-10.1) ... Setting up libnettle4:amd64 (2.4-3) ... Setting up libarchive12:amd64 (3.0.4-2) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.6-2) ... Setting up librtmp0:amd64 (2.4+20111222.git4e06e21-1) ... Setting up libssh2-1:amd64 (1.4.2-1.1) ... Setting up libcurl3:amd64 (7.28.0-3) ... Setting up libcurl3-gnutls:amd64 (7.28.0-3) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-10) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libicu48:amd64 (4.8.1.1-10) ... Setting up procps (1:3.3.4-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up file (5.11-2) ... Setting up gettext-base (0.18.1.1-10) ... Setting up python-support (1.0.15) ... Setting up libbison-dev:amd64 (2:2.5.dfsg-3) ... Setting up bison (2:2.5.dfsg-3) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxmlrpc-core-c3 (1.16.33-3.2) ... Setting up emacsen-common (2.0.5) ... Setting up cmake-data (2.8.9-1) ... Install cmake-data for emacs Setting up cmake (2.8.9-1) ... Setting up html2text (1.3.2a-15) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ... Setting up gettext (0.18.1.1-10) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120909) ... Setting up gccxml (0.9.0+cvs20120420-4) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas3gf (1.2.20110419-5) ... Setting up libboost1.49-dev (1.49.0-3.1) ... Setting up libboost-dev (1.49.0.1) ... Setting up libboost-python1.49.0 (1.49.0-3.1) ... Setting up libpython2.7 (2.7.3-6) ... Setting up libexpat1-dev (2.1.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libssl-dev (1.0.1c-4) ... Setting up python2.7-dev (2.7.3-6) ... Setting up python-dev (2.7.3-3) ... Setting up libboost-python1.49-dev (1.49.0-3.1) ... Setting up libboost-python-dev (1.49.0.1) ... Setting up libboost-regex1.49.0 (1.49.0-3.1) ... Setting up libicu-dev (4.8.1.1-10) ... Setting up libboost-regex1.49-dev (1.49.0-3.1) ... Setting up libboost-regex-dev (1.49.0.1) ... Setting up liblapack3 (3.4.1-6) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack3gf (3.4.1-6) ... Setting up libsqlite3-dev (3.7.15.2-1) ... Setting up python-numpy (1:1.6.2-1) ... Setting up sbuild-build-depends-rdkit-dummy (0.invalid.0) ... Processing triggers for python-support ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-15 g++-4.7_4.7.2-5 gcc-4.6_4.6.3-15 gcc-4.7_4.7.2-5 libc6-dev_2.13-38 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.3-15 libstdc++6-4.7-dev_4.7.2-5 linux-libc-dev_3.2.35-2 Package versions: apt_0.9.7.7 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-7.1 bison_2:2.5.dfsg-3 bsdmainutils_9.0.4 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 clang_3.2-2 clang-3.2_3.2-2 cmake_2.8.9-1 cmake-data_2.8.9-1 compiler-rt_3.2-2 coreutils_8.20-3 cpp_4:4.7.2-1 cpp-4.6_4.6.3-15 cpp-4.7_4.7.2-5 dash_0.5.7-3 debconf_1.5.49 debconf-i18n_1.5.49 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-7 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 emacsen-common_2.0.5 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-5 flex_2.5.35-10.1 g++_4:4.7.2-1 g++-4.6_4.6.3-15 g++-4.7_4.7.2-5 gcc_4:4.7.2-1 gcc-4.4-base_4.4.7-3 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.3-15 gcc-4.6-base_4.6.3-15 gcc-4.7_4.7.2-5 gcc-4.7-base_4.7.2-5 gccxml_0.9.0+cvs20120420-4 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.1-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-39 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.7 libarchive12_3.0.4-2 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libbison-dev_2:2.5.dfsg-3 libblas3_1.2.20110419-5 libblas3gf_1.2.20110419-5 libblkid1_2.20.1-5.3 libboost-dev_1.49.0.1 libboost-python-dev_1.49.0.1 libboost-python1.49-dev_1.49.0-3.1 libboost-python1.49.0_1.49.0-3.1 libboost-regex-dev_1.49.0.1 libboost-regex1.49-dev_1.49.0-3.1 libboost-regex1.49.0_1.49.0-3.1 libboost1.49-dev_1.49.0-3.1 libbz2-1.0_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.13-38 libc6_2.13-38 libc6-dev_2.13-38 libclang-common-dev_3.2-2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1 libcroco3_0.6.6-2 libcurl3_7.28.0-3 libcurl3-gnutls_7.28.0-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.9 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.7.2-5 libglib2.0-0_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-3 libgomp1_4.7.2-5 libgpg-error0_1.10-3.1 libgpm2_1.20.4-6 libgssapi-krb5-2_1.10.1+dfsg-3 libicu-dev_4.8.1.1-10 libicu48_4.8.1.1-10 libidn11_1.25-2 libitm1_4.7.2-5 libk5crypto3_1.10.1+dfsg-3 libkeyutils1_1.5.5-4 libkrb5-3_1.10.1+dfsg-3 libkrb5support0_1.10.1+dfsg-3 liblapack3_3.4.1-6 liblapack3gf_3.4.1-6 libldap-2.4-2_2.4.31-1 libllvm3.2_3.2-2 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_5.11-2 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncursesw5_5.9-10 libnettle4_2.4-3 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.31-2 libpipeline1_1.2.2-1 libprocps0_1:3.3.4-2 libpython2.7_2.7.3-6 libquadmath0_4.7.2-5 libreadline6_6.2+dfsg-0.1 librtmp0_2.4+20111222.git4e06e21-1 libsasl2-2_2.1.25.dfsg1-6 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libsigsegv2_2.9-4 libslang2_2.2.4-15 libsqlite3-0_3.7.15.2-1 libsqlite3-dev_3.7.15.2-1 libss2_1.42.5-1 libssh2-1_1.4.2-1.1 libssl-dev_1.0.1c-4 libssl1.0.0_1.0.1c-4 libstdc++6_4.7.2-5 libstdc++6-4.6-dev_4.6.3-15 libstdc++6-4.7-dev_4.7.2-5 libswitch-perl_2.16-2 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-10 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libxml2_2.8.0+dfsg1-7 libxmlrpc-core-c3_1.16.33-3.2 linux-libc-dev_3.2.35-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 m4_1.4.16-4 make_3.81-8.2 man-db_2.6.3-3 mawk_1.3.3-17 mime-support_3.52-2 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-17 perl-base_5.14.2-17 perl-modules_5.14.2-17 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python_2.7.3-3 python-dev_2.7.3-3 python-minimal_2.7.3-3 python-numpy_1:1.6.2-1 python-support_1.0.15 python2.7_2.7.3-6 python2.7-dev_2.7.3-6 python2.7-minimal_2.7.3-6 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rdkit-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.5p2-1 sysv-rc_2.88dsf-39 sysvinit_2.88dsf-39 sysvinit-utils_2.88dsf-39 tar_1.26+dfsg-0.1 tzdata_2012j-1 ucf_3.0025+nmu3 util-linux_2.20.1-5.3 vim_2:7.3.547-6 vim-common_2:7.3.547-6 vim-runtime_2:7.3.547-6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sat Jul 28 20:44:43 2012 UTC using DSA key ID 9ED101BF gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rdkit_201203-3.dsc dpkg-source: info: extracting rdkit in rdkit-201203 dpkg-source: info: unpacking rdkit_201203.orig.tar.gz dpkg-source: info: unpacking rdkit_201203-3.debian.tar.gz dpkg-source: info: applying big-endian_support.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-8ad57dc3-9f56-4b0a-80f2-6a6e993fd2e9 SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package rdkit dpkg-buildpackage: source version 201203-3 dpkg-buildpackage: source changed by Michael Banck dpkg-source --before-build rdkit-201203 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_testdir -O--buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' find /«PKGBUILDDIR» -name "*.pyc" | xargs rm -f rm -rf /«PKGBUILDDIR»/Projects/DbCLI/testData/bzr/ dh_auto_clean make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean -O--buildsystem=cmake debian/rules build-arch dh build-arch --buildsystem=cmake dh_testdir -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure -- -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -- The C compiler identification is Clang 3.2.0 -- The CXX compiler identification is Clang 3.2.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found PythonLibs: /usr/lib/libpython2.7.so (found version "2.7.3") -- Found PythonInterp: /usr/bin/python (found version "2.7.3") -- Boost version: 1.49.0 -- Found the following Boost libraries: -- python Python Install directory /usr/lib/python2.7/dist-packages -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found. -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.49.0 -- Found the following Boost libraries: -- regex -- Configuring done -- Generating done -- Build files have been written to: /«PKGBUILDDIR»/obj-x86_64-linux-gnu make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build -a -O--buildsystem=cmake make[1]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -H/«PKGBUILDDIR» -B/«PKGBUILDDIR»/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f External/cmim-1.0/CMakeFiles/fastentropy.dir/build.make External/cmim-1.0/CMakeFiles/fastentropy.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/External/cmim-1.0 /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0/CMakeFiles/fastentropy.dir/DependInfo.cmake --color= Scanning dependencies of target fastentropy make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f External/cmim-1.0/CMakeFiles/fastentropy.dir/build.make External/cmim-1.0/CMakeFiles/fastentropy.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Building CXX object External/cmim-1.0/CMakeFiles/fastentropy.dir/fastentropy.cc.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/fastentropy.dir/fastentropy.cc.o -c /«PKGBUILDDIR»/External/cmim-1.0/fastentropy.cc /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 74 [ 1%] Building CXX object External/cmim-1.0/CMakeFiles/fastentropy.dir/misc.cc.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/fastentropy.dir/misc.cc.o -c /«PKGBUILDDIR»/External/cmim-1.0/misc.cc Linking CXX static library libfastentropy.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/cmake -P CMakeFiles/fastentropy.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/cmim-1.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastentropy.dir/link.txt --verbose=1 /usr/bin/ar cr libfastentropy.a CMakeFiles/fastentropy.dir/fastentropy.cc.o CMakeFiles/fastentropy.dir/misc.cc.o /usr/bin/ranlib libfastentropy.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 74 [ 1%] Built target fastentropy make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/External/INCHI-API /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/INCHI-API /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target inchi_support make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /«PKGBUILDDIR»/External/INCHI-API/python/noinchi.py /«PKGBUILDDIR»/rdkit/Chem/inchi.py make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Built target inchi_support make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeneral make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -O3 -DNDEBUG -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Invariant.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 53 [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -O3 -DNDEBUG -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/types.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -O3 -DNDEBUG -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/utils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -O3 -DNDEBUG -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/RDLog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -O3 -DNDEBUG -fPIC -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Dict.cpp Linking CXX shared library ../../lib/libRDGeneral.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O3 -DNDEBUG -shared -Wl,-soname,libRDGeneral.so.1 -o ../../lib/libRDGeneral.so.1.2012.03.1 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o -L/usr/lib/libpython2.7.so cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeneral.so.1.2012.03.1 ../../lib/libRDGeneral.so.1 ../../lib/libRDGeneral.so make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 53 [ 2%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeneral_static make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 54 [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Invariant.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/types.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/types.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/types.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/utils.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/utils.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/utils.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/RDLog.cpp /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 55 [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Dict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/Dict.cpp Linking CXX static library libRDGeneral_static.a cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -P CMakeFiles/RDGeneral_static.dir/cmake_clean_target.cmake cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral_static.dir/link.txt --verbose=1 /usr/bin/ar cr libRDGeneral_static.a CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o CMakeFiles/RDGeneral_static.dir/types.cpp.o CMakeFiles/RDGeneral_static.dir/utils.cpp.o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o /usr/bin/ranlib libRDGeneral_static.a make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 54 55 [ 4%] Built target RDGeneral_static make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= Scanning dependencies of target testDict make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -O3 -DNDEBUG -I/usr/include/python2.7 -I/«PKGBUILDDIR»/Code -o CMakeFiles/testDict.dir/testDict.cpp.o -c /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp Linking CXX executable testDict cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -O3 -DNDEBUG CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -rdynamic -L/usr/lib/libpython2.7.so ../../lib/libRDGeneral.so.1.2012.03.1 -Wl,-rpath,/usr/lib/libpython2.7.so:/«PKGBUILDDIR»/obj-x86_64-linux-gnu/lib CMakeFiles/testDict.dir/testDict.cpp.o: In function `void RDKit::Dict::setVal >, std::allocator > > > >(std::string const&, std::vector >, std::allocator > > >&)': /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp:(.text._ZN5RDKit4Dict6setValISt6vectorIS2_IiSaIiEESaIS4_EEEEvRKSsRT_[_ZN5RDKit4Dict6setValISt6vectorIS2_IiSaIiEESaIS4_EEEEvRKSsRT_]+0xba): undefined reference to `boost::any RDKit::Dict::toany >, std::allocator > > > >(std::vector >, std::allocator > > >) const' CMakeFiles/testDict.dir/testDict.cpp.o: In function `void RDKit::Dict::getVal > >(std::string const&, std::vector >&) const': /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp:(.text._ZNK5RDKit4Dict6getValISt6vectorIiSaIiEEEEvRKSsRT_[_ZNK5RDKit4Dict6getValISt6vectorIiSaIiEEEEvRKSsRT_]+0x34): undefined reference to `std::vector > RDKit::Dict::fromany > >(boost::any const&) const' CMakeFiles/testDict.dir/testDict.cpp.o: In function `void RDKit::Dict::setVal > >(std::string const&, std::vector >&)': /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp:(.text._ZN5RDKit4Dict6setValISt6vectorIiSaIiEEEEvRKSsRT_[_ZN5RDKit4Dict6setValISt6vectorIiSaIiEEEEvRKSsRT_]+0xa6): undefined reference to `boost::any RDKit::Dict::toany > >(std::vector >) const' CMakeFiles/testDict.dir/testDict.cpp.o: In function `void RDKit::Dict::getVal(std::string const&, int&) const': /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp:(.text._ZNK5RDKit4Dict6getValIiEEvRKSsRT_[_ZNK5RDKit4Dict6getValIiEEvRKSsRT_]+0x2d): undefined reference to `int RDKit::Dict::fromany(boost::any const&) const' CMakeFiles/testDict.dir/testDict.cpp.o: In function `void RDKit::Dict::setVal(std::string const&, int&)': /«PKGBUILDDIR»/Code/RDGeneral/testDict.cpp:(.text._ZN5RDKit4Dict6setValIiEEvRKSsRT_[_ZN5RDKit4Dict6setValIiEEvRKSsRT_]+0x36): undefined reference to `boost::any RDKit::Dict::toany(int) const' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[3]: *** [Code/RDGeneral/testDict] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make[2]: *** [Code/RDGeneral/CMakeFiles/testDict.dir/all] Error 2 make[2]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make[1]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make[1]: Leaving directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130202-0210 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Architecture: amd64 Build-Space: 47412 Build-Time: 17 Distribution: unstable Fail-Stage: build Install-Time: 17 Job: rdkit_201203-3 Package: rdkit Package-Time: 59 Source-Version: 201203-3 Space: 47412 Status: attempted Version: 201203-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20130202-0210 Build needed 00:00:59, 47412k disc space DC-Status: Failed 59.77506s DC-Time-Estimation: 59.77506 versus expected 3892 (r/m: 64.1107669318943 ; m: 59.77506)