DC-Build-Header: adios 1.3-11 / 2013-07-16 16:05:47 +0000 DC-Task: source:adios version:1.3-11 architecture:any chroot:unstable esttime:204 logfile:/tmp/adios_1.3-11_unstable_clang.log modes:binary-only:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " adios_1.3-11' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-10-159-44-187.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ adios 1.3-11clang1 (amd64) 16 Jul 2013 16:05 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: adios Version: 1.3-11clang1 Source Version: 1.3-11 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/adios-CXOQV7/adios-1.3' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/adios-CXOQV7' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-251c4133-44ea-4fc4-810d-0a6ba92a2e1a' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [204 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:6 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:7 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:8 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [1809 B] Get:9 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:10 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [12.9 kB] Get:11 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [1809 B] Get:12 http://localhost:9999 unstable/main amd64 2013-07-14-0231.07.pdiff [14.9 kB] Get:13 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [12.9 kB] Get:14 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [1384 B] Get:15 http://localhost:9999 unstable/main amd64 2013-07-14-0231.07.pdiff [14.9 kB] Get:16 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [4670 B] Get:17 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [1384 B] Get:18 http://localhost:9999 unstable/main amd64 2013-07-14-0832.16.pdiff [1624 B] Get:19 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [4670 B] Get:20 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [337 B] Get:21 http://localhost:9999 unstable/main amd64 2013-07-14-0832.16.pdiff [1624 B] Get:22 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [11.4 kB] Get:23 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [337 B] Get:24 http://localhost:9999 unstable/main amd64 2013-07-14-1431.18.pdiff [8223 B] Get:25 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [11.4 kB] Get:26 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [887 B] Get:27 http://localhost:9999 unstable/main amd64 2013-07-14-1431.18.pdiff [8223 B] Get:28 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [9038 B] Get:29 http://localhost:9999 unstable/main 2013-07-14-1431.18.pdiff [887 B] Get:30 http://localhost:9999 unstable/main amd64 2013-07-14-2031.21.pdiff [9955 B] Get:31 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [9038 B] Get:32 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [2736 B] Get:33 http://localhost:9999 unstable/main amd64 2013-07-14-2031.21.pdiff [9955 B] Get:34 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [9715 B] Get:35 http://localhost:9999 unstable/main 2013-07-14-2031.21.pdiff [2736 B] Get:36 http://localhost:9999 unstable/main amd64 2013-07-15-0229.01.pdiff [12.7 kB] Get:37 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [9715 B] Get:38 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [2239 B] Get:39 http://localhost:9999 unstable/main amd64 2013-07-15-0229.01.pdiff [12.7 kB] Get:40 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [3273 B] Get:41 http://localhost:9999 unstable/main 2013-07-15-0229.01.pdiff [2239 B] Get:42 http://localhost:9999 unstable/main amd64 2013-07-15-0830.19.pdiff [3964 B] Get:43 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [3273 B] Get:44 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [1357 B] Get:45 http://localhost:9999 unstable/main amd64 2013-07-15-0830.19.pdiff [3964 B] Get:46 http://localhost:9999 unstable/main 2013-07-15-1432.36.pdiff [5326 B] Get:47 http://localhost:9999 unstable/main 2013-07-15-0830.19.pdiff [1357 B] Get:48 http://localhost:9999 unstable/main amd64 2013-07-15-1432.36.pdiff [9809 B] Get:49 http://localhost:9999 unstable/main 2013-07-15-1432.36.pdiff [5326 B] Get:50 http://localhost:9999 unstable/main 2013-07-15-1432.36.pdiff [322 B] Get:51 http://localhost:9999 unstable/main amd64 2013-07-15-1432.36.pdiff [9809 B] Get:52 http://localhost:9999 unstable/main 2013-07-15-2031.50.pdiff [12.2 kB] Get:53 http://localhost:9999 unstable/main 2013-07-15-1432.36.pdiff [322 B] Get:54 http://localhost:9999 unstable/main amd64 2013-07-15-2031.50.pdiff [24.4 kB] Get:55 http://localhost:9999 unstable/main 2013-07-15-2031.50.pdiff [12.2 kB] Get:56 http://localhost:9999 unstable/main 2013-07-15-2031.50.pdiff [537 B] Get:57 http://localhost:9999 unstable/main amd64 2013-07-15-2031.50.pdiff [24.4 kB] Get:58 http://localhost:9999 unstable/main 2013-07-16-0233.12.pdiff [14.8 kB] Get:59 http://localhost:9999 unstable/main 2013-07-15-2031.50.pdiff [537 B] Get:60 http://localhost:9999 unstable/main amd64 2013-07-16-0233.12.pdiff [49.5 kB] Get:61 http://localhost:9999 unstable/main 2013-07-16-0233.12.pdiff [14.8 kB] Get:62 http://localhost:9999 unstable/main 2013-07-16-0233.12.pdiff [3247 B] Get:63 http://localhost:9999 unstable/main amd64 2013-07-16-0233.12.pdiff [49.5 kB] Get:64 http://localhost:9999 unstable/main 2013-07-16-0834.41.pdiff [7447 B] Get:65 http://localhost:9999 unstable/main 2013-07-16-0233.12.pdiff [3247 B] Get:66 http://localhost:9999 unstable/main amd64 2013-07-16-0834.41.pdiff [4493 B] Get:67 http://localhost:9999 unstable/main 2013-07-16-0834.41.pdiff [7447 B] Get:68 http://localhost:9999 unstable/main 2013-07-16-0834.41.pdiff [5852 B] Get:69 http://localhost:9999 unstable/main amd64 2013-07-16-0834.41.pdiff [4493 B] Get:70 http://localhost:9999 unstable/main 2013-07-16-0834.41.pdiff [5852 B] Fetched 519 kB in 35s (14.5 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: cpp-4.7 gcc-4.7 gcc-4.7-base initscripts libgcc-4.7-dev sysv-rc sysvinit sysvinit-utils 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.2 MB of archives. After this operation, 18.4 kB disk space will be freed. Get:1 http://localhost:9999/debian/ unstable/main sysvinit amd64 2.88dsf-42 [134 kB] Get:2 http://localhost:9999/debian/ unstable/main sysv-rc all 2.88dsf-42 [80.4 kB] Get:3 http://localhost:9999/debian/ unstable/main sysvinit-utils amd64 2.88dsf-42 [103 kB] Get:4 http://localhost:9999/debian/ unstable/main initscripts amd64 2.88dsf-42 [87.1 kB] Get:5 http://localhost:9999/debian/ unstable/main gcc-4.7 amd64 4.7.3-6 [5819 kB] Get:6 http://localhost:9999/debian/ unstable/main cpp-4.7 amd64 4.7.3-6 [5385 kB] Get:7 http://localhost:9999/debian/ unstable/main libgcc-4.7-dev amd64 4.7.3-6 [2465 kB] Get:8 http://localhost:9999/debian/ unstable/main gcc-4.7-base amd64 4.7.3-6 [149 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.2 MB in 0s (28.6 MB/s) (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysvinit 2.88dsf-41 (using .../sysvinit_2.88dsf-42_amd64.deb) ... Unpacking replacement sysvinit ... Setting up sysvinit (2.88dsf-42) ... Not restarting sysvinit (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysv-rc 2.88dsf-41 (using .../sysv-rc_2.88dsf-42_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace sysvinit-utils 2.88dsf-41 (using .../sysvinit-utils_2.88dsf-42_amd64.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.88dsf-42) ... Setting up sysv-rc (2.88dsf-42) ... (Reading database ... 13844 files and directories currently installed.) Preparing to replace initscripts 2.88dsf-41 (using .../initscripts_2.88dsf-42_amd64.deb) ... Removing unmodified and obsolete conffile /etc/init.d/mtab.sh ... Unpacking replacement initscripts ... Setting up initscripts (2.88dsf-42) ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/checkroot-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/rmnologin ... Installing new version of config file /etc/network/if-up.d/mountnfs ... (Reading database ... 13843 files and directories currently installed.) Preparing to replace gcc-4.7 4.7.3-5 (using .../gcc-4.7_4.7.3-6_amd64.deb) ... Unpacking replacement gcc-4.7 ... Preparing to replace cpp-4.7 4.7.3-5 (using .../cpp-4.7_4.7.3-6_amd64.deb) ... Unpacking replacement cpp-4.7 ... Preparing to replace libgcc-4.7-dev:amd64 4.7.3-5 (using .../libgcc-4.7-dev_4.7.3-6_amd64.deb) ... Unpacking replacement libgcc-4.7-dev:amd64 ... Preparing to replace gcc-4.7-base:amd64 4.7.3-5 (using .../gcc-4.7-base_4.7.3-6_amd64.deb) ... Unpacking replacement gcc-4.7-base:amd64 ... Setting up gcc-4.7-base:amd64 (4.7.3-6) ... Setting up cpp-4.7 (4.7.3-6) ... Setting up libgcc-4.7-dev:amd64 (4.7.3-6) ... Setting up gcc-4.7 (4.7.3-6) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... Need to get 917 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main adios 1.3-11 (dsc) [1808 B] Get:2 http://localhost:9999/debian/ unstable/main adios 1.3-11 (tar) [907 kB] Get:3 http://localhost:9999/debian/ unstable/main adios 1.3-11 (diff) [7770 B] Fetched 917 kB in 0s (3212 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Install of clang' Install of clang + apt-get update Hit http://localhost:9999 unstable InRelease Hit http://localhost:9999 unstable/main Sources/DiffIndex Hit http://localhost:9999 unstable/main amd64 Packages/DiffIndex Hit http://localhost:9999 unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.3 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev Suggested packages: libstdc++6-4.7-doc Recommended packages: llvm-3.3-dev python The following NEW packages will be installed: clang-3.3 libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 27.2 MB of archives. After this operation, 80.8 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.0.13-4 [21.6 kB] Get:2 http://localhost:9999/debian/ unstable/main libllvm3.3 amd64 1:3.3-3 [8575 kB] Get:3 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.8.1-6 [160 kB] Get:4 http://localhost:9999/debian/ unstable/main libstdc++6-4.7-dev amd64 4.7.3-6 [1694 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc-4.7-dev amd64 4.7.3-6 [719 kB] Get:6 http://localhost:9999/debian/ unstable/main libclang-common-3.3-dev amd64 1:3.3-3 [574 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.3 amd64 1:3.3-3 [4579 kB] Get:8 http://localhost:9999/debian/ unstable/main clang-3.3 amd64 1:3.3-3 [10.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.2 MB in 0s (29.3 MB/s) Selecting previously unselected package libffi6:amd64. (Reading database ... 13843 files and directories currently installed.) Unpacking libffi6:amd64 (from .../libffi6_3.0.13-4_amd64.deb) ... Selecting previously unselected package libllvm3.3:amd64. Unpacking libllvm3.3:amd64 (from .../libllvm3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.8.1-6_amd64.deb) ... Selecting previously unselected package libstdc++6-4.7-dev:amd64. Unpacking libstdc++6-4.7-dev:amd64 (from .../libstdc++6-4.7-dev_4.7.3-6_amd64.deb) ... Selecting previously unselected package libobjc-4.7-dev:amd64. Unpacking libobjc-4.7-dev:amd64 (from .../libobjc-4.7-dev_4.7.3-6_amd64.deb) ... Selecting previously unselected package libclang-common-3.3-dev. Unpacking libclang-common-3.3-dev (from .../libclang-common-3.3-dev_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libclang1-3.3. Unpacking libclang1-3.3 (from .../libclang1-3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package clang-3.3. Unpacking clang-3.3 (from .../clang-3.3_1%3a3.3-3_amd64.deb) ... Setting up libffi6:amd64 (3.0.13-4) ... Setting up libllvm3.3:amd64 (1:3.3-3) ... Setting up libobjc4:amd64 (4.8.1-6) ... Setting up libstdc++6-4.7-dev:amd64 (4.7.3-6) ... Setting up libobjc-4.7-dev:amd64 (4.7.3-6) ... Setting up libclang-common-3.3-dev (1:3.3-3) ... Setting up libclang1-3.3 (1:3.3-3) ... Setting up clang-3.3 (1:3.3-3) ... Processing triggers for libc-bin ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 + ln -s clang++ g++-4.8 + ln -s clang gcc-4.8 + ln -s clang cpp-4.8 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'gcc-4.8 hold' + dpkg --set-selections + echo 'cpp-4.8 hold' + dpkg --set-selections + echo 'g++-4.8 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-TFEbZa/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/710 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14698 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libnetcdf-dev, gfortran, libhdf5-mpi-dev | libhdf5-dev, libmxml-dev, python-all-dev, mpi-default-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libnetcdf-dev, gfortran, libhdf5-mpi-dev, libmxml-dev, python-all-dev, mpi-default-dev dpkg-deb: building package `sbuild-build-depends-adios-dummy' in `/«BUILDDIR»/resolver-3PNzOd/apt_archive/sbuild-build-depends-adios-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install adios build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bsdmainutils debhelper file gettext gettext-base gfortran gfortran-4.8 groff-base hdf5-helpers intltool-debian libasprintf0c2 libcf0 libcroco3 libcurl3-gnutls libexpat1 libexpat1-dev libgcrypt11 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libncursesw5 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp0 libsasl2-2 libsasl2-modules libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-all python-all-dev python-dev python-minimal python2.7 python2.7-dev python2.7-minimal zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg groff rng-tools krb5-doc krb5-user libhdf5-doc netcdf-bin netcdf-doc libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev ca-certificates libglib2.0-data shared-mime-info krb5-locales pkg-config xml-core libmail-sendmail-perl The following NEW packages will be installed: adduser bsdmainutils debhelper file gettext gettext-base gfortran gfortran-4.8 groff-base hdf5-helpers intltool-debian libasprintf0c2 libcf0 libcroco3 libcurl3-gnutls libexpat1 libexpat1-dev libgcrypt11 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libidn11 libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmxml-dev libmxml1 libncursesw5 libnetcdf-dev libnetcdfc++4 libnetcdfc7 libnetcdff5 libnuma1 libopenmpi-dev libopenmpi1.3 libp11-kit0 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp0 libsasl2-2 libsasl2-modules libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-3 libtorque2 libunistring0 libxml2 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-all python-all-dev python-dev python-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-adios-dummy zlib1g-dev 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 66.8 MB/66.8 MB of archives. After this operation, 177 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libncursesw5 amd64 5.9+20130608-1 [141 kB] Get:2 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.2.4-1 [41.0 kB] Get:3 http://localhost:9999/debian/ unstable/main libssl1.0.0 amd64 1.0.1e-3 [1242 kB] Get:4 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-3 [747 kB] Get:5 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:6 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.5-2 [976 kB] Get:7 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.18.2.1-1 [28.9 kB] Get:8 http://localhost:9999/debian/ unstable/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:9 http://localhost:9999/debian/ unstable/main libgcrypt11 amd64 1.5.2-3 [296 kB] Get:10 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.18.4-1 [115 kB] Get:11 http://localhost:9999/debian/ unstable/main libtasn1-3 amd64 2.14-3 [68.5 kB] Get:12 http://localhost:9999/debian/ unstable/main libgnutls26 amd64 2.12.23-5 [617 kB] Get:13 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.5-7 [8808 B] Get:14 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.10.1+dfsg-6.1 [49.3 kB] Get:15 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.10.1+dfsg-6.1 [112 kB] Get:16 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.10.1+dfsg-6.1 [392 kB] Get:17 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.10.1+dfsg-6.1 [147 kB] Get:18 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.25-2 [178 kB] Get:19 http://localhost:9999/debian/ unstable/main libsasl2-modules amd64 2.1.25.dfsg1-13 [123 kB] Get:20 http://localhost:9999/debian/ unstable/main libsasl2-2 amd64 2.1.25.dfsg1-13 [109 kB] Get:21 http://localhost:9999/debian/ unstable/main libldap-2.4-2 amd64 2.4.31-1+nmu2 [243 kB] Get:22 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.14-2 [216 kB] Get:23 http://localhost:9999/debian/ unstable/main libsqlite3-0 amd64 3.7.17-1 [478 kB] Get:24 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-2 [911 kB] Get:25 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.36.3-3 [2048 kB] Get:26 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-2 [133 kB] Get:27 http://localhost:9999/debian/ unstable/main librtmp0 amd64 2.4+20121230.gitdf6c518-1 [62.3 kB] Get:28 http://localhost:9999/debian/ unstable/main libssh2-1 amd64 1.4.3-1 [135 kB] Get:29 http://localhost:9999/debian/ unstable/main libcurl3-gnutls amd64 7.31.0-2 [279 kB] Get:30 http://localhost:9999/debian/ unstable/main libexpat1 amd64 2.1.0-4 [138 kB] Get:31 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.8.1-6 [345 kB] Get:32 http://localhost:9999/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB] Get:33 http://localhost:9999/debian/ unstable/main libpython2.7-minimal amd64 2.7.5-6 [520 kB] Get:34 http://localhost:9999/debian/ unstable/main mime-support all 3.54 [36.4 kB] Get:35 http://localhost:9999/debian/ unstable/main libpython2.7-stdlib amd64 2.7.5-6 [2482 kB] Get:36 http://localhost:9999/debian/ unstable/main libpython2.7 amd64 2.7.5-6 [1361 kB] Get:37 http://localhost:9999/debian/ unstable/main libexpat1-dev amd64 2.1.0-4 [223 kB] Get:38 http://localhost:9999/debian/ unstable/main libpython2.7-dev amd64 2.7.5-6 [23.5 MB] Get:39 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:40 http://localhost:9999/debian/ unstable/main python2.7-minimal amd64 2.7.5-6 [1552 kB] Get:41 http://localhost:9999/debian/ unstable/main adduser all 3.113+nmu3 [264 kB] Get:42 http://localhost:9999/debian/ unstable/main libibverbs1 amd64 1.1.7-1 [35.4 kB] Get:43 http://localhost:9999/debian/ unstable/main libnuma1 amd64 2.0.8-3 [34.5 kB] Get:44 http://localhost:9999/debian/ unstable/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:45 http://localhost:9999/debian/ unstable/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:46 http://localhost:9999/debian/ unstable/main libhdf5-openmpi-7 amd64 1.8.11-3 [1455 kB] Get:47 http://localhost:9999/debian/ unstable/main file amd64 1:5.14-2 [54.0 kB] Get:48 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.18.2.1-1 [156 kB] Get:49 http://localhost:9999/debian/ unstable/main python2.7 amd64 2.7.5-6 [229 kB] Get:50 http://localhost:9999/debian/ unstable/main python-minimal amd64 2.7.5-2 [42.7 kB] Get:51 http://localhost:9999/debian/ unstable/main libpython-stdlib amd64 2.7.5-2 [19.6 kB] Get:52 http://localhost:9999/debian/ unstable/main python amd64 2.7.5-2 [186 kB] Get:53 http://localhost:9999/debian/ unstable/main gettext amd64 0.18.2.1-1 [2019 kB] Get:54 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:55 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:56 http://localhost:9999/debian/ unstable/main debhelper all 9.20130630 [710 kB] Get:57 http://localhost:9999/debian/ unstable/main libgfortran-4.8-dev amd64 4.8.1-6 [436 kB] Get:58 http://localhost:9999/debian/ unstable/main gfortran-4.8 amd64 4.8.1-6 [6142 kB] Get:59 http://localhost:9999/debian/ unstable/main gfortran amd64 4:4.8.1-2 [1126 B] Get:60 http://localhost:9999/debian/ unstable/main hdf5-helpers amd64 1.8.11-3 [32.2 kB] Get:61 http://localhost:9999/debian/ unstable/main libcf0 amd64 1:4.1.3-6+b1 [49.9 kB] Get:62 http://localhost:9999/debian/ unstable/main libjpeg8-dev amd64 8d-1 [242 kB] Get:63 http://localhost:9999/debian/ unstable/main libmxml1 amd64 2.6-2 [28.0 kB] Get:64 http://localhost:9999/debian/ unstable/main libmxml-dev amd64 2.6-2 [62.3 kB] Get:65 http://localhost:9999/debian/ unstable/main libnetcdfc7 amd64 1:4.1.3-6+b1 [356 kB] Get:66 http://localhost:9999/debian/ unstable/main libnetcdff5 amd64 1:4.1.3-6+b1 [142 kB] Get:67 http://localhost:9999/debian/ unstable/main libnetcdfc++4 amd64 1:4.1.3-6+b1 [64.6 kB] Get:68 http://localhost:9999/debian/ unstable/main libnetcdf-dev amd64 1:4.1.3-6+b1 [655 kB] Get:69 http://localhost:9999/debian/ unstable/main libpython-dev amd64 2.7.5-2 [19.6 kB] Get:70 http://localhost:9999/debian/ unstable/main libpython-all-dev amd64 2.7.5-2 [900 B] Get:71 http://localhost:9999/debian/ unstable/main python-all amd64 2.7.5-2 [870 B] Get:72 http://localhost:9999/debian/ unstable/main python2.7-dev amd64 2.7.5-6 [288 kB] Get:73 http://localhost:9999/debian/ unstable/main python-dev amd64 2.7.5-2 [1068 B] Get:74 http://localhost:9999/debian/ unstable/main python-all-dev amd64 2.7.5-2 [890 B] Get:75 http://localhost:9999/debian/ unstable/main zlib1g-dev amd64 1:1.2.8.dfsg-1 [217 kB] Get:76 http://localhost:9999/debian/ unstable/main openmpi-common all 1.4.5-1 [101 kB] Get:77 http://localhost:9999/debian/ unstable/main libibverbs-dev amd64 1.1.7-1 [86.1 kB] Get:78 http://localhost:9999/debian/ unstable/main libopenmpi-dev amd64 1.4.5-1 [2778 kB] Get:79 http://localhost:9999/debian/ unstable/main libhdf5-openmpi-dev amd64 1.8.11-3 [7166 kB] Get:80 http://localhost:9999/debian/ unstable/main mpi-default-dev amd64 1.0.1 [3604 B] Get:81 http://localhost:9999/debian/ unstable/main libhdf5-mpi-dev amd64 1.8.11-3 [23.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.8 MB in 3s (19.4 MB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 14698 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9+20130608-1_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.4-1_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.2.1-1_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.2-3_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.18.4-1_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.14-3_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.23-5_amd64.deb) ... Selecting previously unselected package libkeyutils1:amd64. Unpacking libkeyutils1:amd64 (from .../libkeyutils1_1.5.5-7_amd64.deb) ... Selecting previously unselected package libkrb5support0:amd64. Unpacking libkrb5support0:amd64 (from .../libkrb5support0_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libk5crypto3:amd64. Unpacking libk5crypto3:amd64 (from .../libk5crypto3_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libkrb5-3:amd64. Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-6.1_amd64.deb) ... Selecting previously unselected package libidn11:amd64. Unpacking libidn11:amd64 (from .../libidn11_1.25-2_amd64.deb) ... Selecting previously unselected package libsasl2-modules:amd64. Unpacking libsasl2-modules:amd64 (from .../libsasl2-modules_2.1.25.dfsg1-13_amd64.deb) ... Selecting previously unselected package libsasl2-2:amd64. Unpacking libsasl2-2:amd64 (from .../libsasl2-2_2.1.25.dfsg1-13_amd64.deb) ... Selecting previously unselected package libldap-2.4-2:amd64. Unpacking libldap-2.4-2:amd64 (from .../libldap-2.4-2_2.4.31-1+nmu2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.17-1_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.9.1+dfsg1-2_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.36.3-3_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.8-2_amd64.deb) ... Selecting previously unselected package librtmp0:amd64. Unpacking librtmp0:amd64 (from .../librtmp0_2.4+20121230.gitdf6c518-1_amd64.deb) ... Selecting previously unselected package libssh2-1:amd64. Unpacking libssh2-1:amd64 (from .../libssh2-1_1.4.3-1_amd64.deb) ... Selecting previously unselected package libcurl3-gnutls:amd64. Unpacking libcurl3-gnutls:amd64 (from .../libcurl3-gnutls_7.31.0-2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-4_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.8.1-6_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1_amd64.deb) ... Selecting previously unselected package libpython2.7-minimal. Unpacking libpython2.7-minimal (from .../libpython2.7-minimal_2.7.5-6_amd64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54_all.deb) ... Selecting previously unselected package libpython2.7-stdlib. Unpacking libpython2.7-stdlib (from .../libpython2.7-stdlib_2.7.5-6_amd64.deb) ... Selecting previously unselected package libpython2.7. Unpacking libpython2.7 (from .../libpython2.7_2.7.5-6_amd64.deb) ... Selecting previously unselected package libexpat1-dev:amd64. Unpacking libexpat1-dev:amd64 (from .../libexpat1-dev_2.1.0-4_amd64.deb) ... Selecting previously unselected package libpython2.7-dev. Unpacking libpython2.7-dev (from .../libpython2.7-dev_2.7.5-6_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package python2.7-minimal. Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.5-6_amd64.deb) ... Selecting previously unselected package adduser. Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.7-1_amd64.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8-3_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-7:amd64. Unpacking libhdf5-openmpi-7:amd64 (from .../libhdf5-openmpi-7_1.8.11-3_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.2.1-1_amd64.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.5-6_amd64.deb) ... Selecting previously unselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.7.5-2_amd64.deb) ... Selecting previously unselected package libpython-stdlib:amd64. Unpacking libpython-stdlib:amd64 (from .../libpython-stdlib_2.7.5-2_amd64.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.5-2_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.2.1-1_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130630_all.deb) ... Selecting previously unselected package libgfortran-4.8-dev:amd64. Unpacking libgfortran-4.8-dev:amd64 (from .../libgfortran-4.8-dev_4.8.1-6_amd64.deb) ... Selecting previously unselected package gfortran-4.8. Unpacking gfortran-4.8 (from .../gfortran-4.8_4.8.1-6_amd64.deb) ... Selecting previously unselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.8.1-2_amd64.deb) ... Selecting previously unselected package hdf5-helpers. Unpacking hdf5-helpers (from .../hdf5-helpers_1.8.11-3_amd64.deb) ... Selecting previously unselected package libcf0. Unpacking libcf0 (from .../libcf0_1%3a4.1.3-6+b1_amd64.deb) ... Selecting previously unselected package libjpeg8-dev:amd64. Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8d-1_amd64.deb) ... Selecting previously unselected package libmxml1. Unpacking libmxml1 (from .../libmxml1_2.6-2_amd64.deb) ... Selecting previously unselected package libmxml-dev. Unpacking libmxml-dev (from .../libmxml-dev_2.6-2_amd64.deb) ... Selecting previously unselected package libnetcdfc7. Unpacking libnetcdfc7 (from .../libnetcdfc7_1%3a4.1.3-6+b1_amd64.deb) ... Selecting previously unselected package libnetcdff5. Unpacking libnetcdff5 (from .../libnetcdff5_1%3a4.1.3-6+b1_amd64.deb) ... Selecting previously unselected package libnetcdfc++4. Unpacking libnetcdfc++4 (from .../libnetcdfc++4_1%3a4.1.3-6+b1_amd64.deb) ... Selecting previously unselected package libnetcdf-dev. Unpacking libnetcdf-dev (from .../libnetcdf-dev_1%3a4.1.3-6+b1_amd64.deb) ... Selecting previously unselected package libpython-dev:amd64. Unpacking libpython-dev:amd64 (from .../libpython-dev_2.7.5-2_amd64.deb) ... Selecting previously unselected package libpython-all-dev:amd64. Unpacking libpython-all-dev:amd64 (from .../libpython-all-dev_2.7.5-2_amd64.deb) ... Selecting previously unselected package python-all. Unpacking python-all (from .../python-all_2.7.5-2_amd64.deb) ... Selecting previously unselected package python2.7-dev. Unpacking python2.7-dev (from .../python2.7-dev_2.7.5-6_amd64.deb) ... Selecting previously unselected package python-dev. Unpacking python-dev (from .../python-dev_2.7.5-2_amd64.deb) ... Selecting previously unselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.7.5-2_amd64.deb) ... Selecting previously unselected package zlib1g-dev:amd64. Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_amd64.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.7-1_amd64.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-dev. Unpacking libhdf5-openmpi-dev (from .../libhdf5-openmpi-dev_1.8.11-3_amd64.deb) ... Selecting previously unselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_amd64.deb) ... Selecting previously unselected package libhdf5-mpi-dev. Unpacking libhdf5-mpi-dev (from .../libhdf5-mpi-dev_1.8.11-3_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-adios-dummy. Unpacking sbuild-build-depends-adios-dummy (from .../sbuild-build-depends-adios-dummy.deb) ... Setting up libncursesw5:amd64 (5.9+20130608-1) ... Setting up libpipeline1:amd64 (1.2.4-1) ... Setting up libssl1.0.0:amd64 (1.0.1e-3) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.18.2.1-1) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.2-3) ... Setting up libp11-kit0:amd64 (0.18.4-1) ... Setting up libtasn1-3:amd64 (2.14-3) ... Setting up libgnutls26:amd64 (2.12.23-5) ... Setting up libkeyutils1:amd64 (1.5.5-7) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-6.1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-6.1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-6.1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-6.1) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-13) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-13) ... Setting up libldap-2.4-2:amd64 (2.4.31-1+nmu2) ... Setting up libmagic1:amd64 (1:5.14-2) ... Setting up libsqlite3-0:amd64 (3.7.17-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-2) ... Setting up libglib2.0-0:amd64 (2.36.3-3) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up librtmp0:amd64 (2.4+20121230.gitdf6c518-1) ... Setting up libssh2-1:amd64 (1.4.3-1) ... Setting up libcurl3-gnutls:amd64 (7.31.0-2) ... Setting up libexpat1:amd64 (2.1.0-4) ... Setting up libgfortran3:amd64 (4.8.1-6) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libpython2.7-minimal (2.7.5-6) ... Setting up mime-support (3.54) ... Setting up libpython2.7-stdlib (2.7.5-6) ... Setting up libpython2.7 (2.7.5-6) ... Setting up libexpat1-dev:amd64 (2.1.0-4) ... Setting up libpython2.7-dev (2.7.5-6) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up python2.7-minimal (2.7.5-6) ... Setting up adduser (3.113+nmu3) ... Setting up libibverbs1 (1.1.7-1) ... Setting up libnuma1 (2.0.8-3) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up libhdf5-openmpi-7:amd64 (1.8.11-3) ... Setting up file (1:5.14-2) ... Setting up gettext-base (0.18.2.1-1) ... Setting up python2.7 (2.7.5-6) ... Setting up python-minimal (2.7.5-2) ... Setting up libpython-stdlib:amd64 (2.7.5-2) ... Setting up python (2.7.5-2) ... Setting up gettext (0.18.2.1-1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20130630) ... Setting up libgfortran-4.8-dev:amd64 (4.8.1-6) ... Setting up gfortran-4.8 (4.8.1-6) ... Setting up gfortran (4:4.8.1-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up hdf5-helpers (1.8.11-3) ... Setting up libcf0 (1:4.1.3-6+b1) ... Setting up libjpeg8-dev:amd64 (8d-1) ... Setting up libmxml1 (2.6-2) ... Setting up libmxml-dev (2.6-2) ... Setting up libnetcdfc7 (1:4.1.3-6+b1) ... Setting up libnetcdff5 (1:4.1.3-6+b1) ... Setting up libnetcdfc++4 (1:4.1.3-6+b1) ... Setting up libnetcdf-dev (1:4.1.3-6+b1) ... Setting up libpython-dev:amd64 (2.7.5-2) ... Setting up libpython-all-dev:amd64 (2.7.5-2) ... Setting up python-all (2.7.5-2) ... Setting up python2.7-dev (2.7.5-6) ... Setting up python-dev (2.7.5-2) ... Setting up python-all-dev (2.7.5-2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up libibverbs-dev (1.1.7-1) ... Setting up libopenmpi-dev (1.4.5-1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libhdf5-openmpi-dev (1.8.11-3) ... Setting up mpi-default-dev (1.0.1) ... Setting up libhdf5-mpi-dev (1.8.11-3) ... Setting up sbuild-build-depends-adios-dummy (0.invalid.0) ... Processing triggers for libc-bin ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.23.52.20130620-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc-4.6_4.6.4-4 gcc-4.7_4.7.3-6 gcc-4.8_4.8.1-6 libc6-dev_2.17-7 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-6 linux-libc-dev_3.9.8-1 Package versions: adduser_3.113+nmu3 apt_0.9.9.1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130620-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-4 clang-3.3_1:3.3-3 coreutils_8.20-3 cpp_4:4.8.1-2 cpp-4.6_4.6.4-4 cpp-4.7_4.7.3-6 cpp-4.8_4.8.1-6 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.19-2 file_1:5.14-2 findutils_4.4.2-6 g++_4:4.8.1-2 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc_4:4.8.1-2 gcc-4.4-base_4.4.7-4 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-4 gcc-4.6-base_4.6.4-4 gcc-4.7_4.7.3-6 gcc-4.7-base_4.7.3-6 gcc-4.8_4.8.1-6 gcc-4.8-base_4.8.1-6 gettext_0.18.2.1-1 gettext-base_0.18.2.1-1 gfortran_4:4.8.1-2 gfortran-4.8_4.8.1-6 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hdf5-helpers_1.8.11-3 hostname_3.13 initscripts_2.88dsf-42 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.52-1 libapt-pkg4.12_0.9.9.1 libasan0_4.8.1-6 libasprintf0c2_0.18.2.1-1 libatomic1_4.8.1-6 libattr1_1:2.4.47-1 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-4 libc-bin_2.17-7 libc-dev-bin_2.17-7 libc6_2.17-7 libc6-dev_2.17-7 libcap2_1:2.22-1.2 libcf0_1:4.1.3-6+b1 libclang-common-3.3-dev_1:3.3-3 libclang1-3.3_1:3.3-3 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.0-2 libcloog-ppl1_0.16.1-3 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libcurl3-gnutls_7.31.0-2 libdb5.1_5.1.29-6 libdpkg-perl_1.16.10 libexpat1_2.1.0-4 libexpat1-dev_2.1.0-4 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.2d-5 libgcc-4.7-dev_4.7.3-6 libgcc-4.8-dev_4.8.1-6 libgcc1_1:4.8.1-6 libgcrypt11_1.5.2-3 libgdbm3_1.8.3-12 libgfortran-4.8-dev_4.8.1-6 libgfortran3_4.8.1-6 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-2 libgmpxx4ldbl_2:5.1.2+dfsg-2 libgnutls26_2.12.23-5 libgomp1_4.8.1-6 libgpg-error0_1.10-3.1 libgpm2_1.20.4-6.1 libgssapi-krb5-2_1.10.1+dfsg-6.1 libhdf5-mpi-dev_1.8.11-3 libhdf5-openmpi-7_1.8.11-3 libhdf5-openmpi-dev_1.8.11-3 libibverbs-dev_1.1.7-1 libibverbs1_1.1.7-1 libidn11_1.25-2 libisl10_0.11.2-1 libitm1_4.8.1-6 libjpeg8_8d-1 libjpeg8-dev_8d-1 libk5crypto3_1.10.1+dfsg-6.1 libkeyutils1_1.5.5-7 libkrb5-3_1.10.1+dfsg-6.1 libkrb5support0_1.10.1+dfsg-6.1 libldap-2.4-2_2.4.31-1+nmu2 libllvm3.3_1:3.3-3 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libmxml-dev_2.6-2 libmxml1_2.6-2 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnetcdf-dev_1:4.1.3-6+b1 libnetcdfc++4_1:4.1.3-6+b1 libnetcdfc7_1:4.1.3-6+b1 libnetcdff5_1:4.1.3-6+b1 libnuma1_2.0.8-3 libobjc-4.7-dev_4.7.3-6 libobjc4_4.8.1-6 libopenmpi-dev_1.4.5-1 libopenmpi1.3_1.4.5-1 libp11-kit0_0.18.4-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libpython-all-dev_2.7.5-2 libpython-dev_2.7.5-2 libpython-stdlib_2.7.5-2 libpython2.7_2.7.5-6 libpython2.7-dev_2.7.5-6 libpython2.7-minimal_2.7.5-6 libpython2.7-stdlib_2.7.5-6 libquadmath0_4.8.1-6 libreadline6_6.2+dfsg-0.1 librtmp0_2.4+20121230.gitdf6c518-1 libsasl2-2_2.1.25.dfsg1-13 libsasl2-modules_2.1.25.dfsg1-13 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsqlite3-0_3.7.17-1 libss2_1.42.8-1 libssh2-1_1.4.3-1 libssl1.0.0_1.0.1e-3 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-6 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libtorque2_2.4.16+dfsg-1 libtsan0_4.8.1-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-2 linux-libc-dev_3.9.8-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12 make_3.81-8.2 man-db_2.6.5-2 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 mpi-default-dev_1.0.1 multiarch-support_2.17-7 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 openmpi-common_1.4.5-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 python_2.7.5-2 python-all_2.7.5-2 python-all-dev_2.7.5-2 python-dev_2.7.5-2 python-minimal_2.7.5-2 python2.7_2.7.5-6 python2.7-dev_2.7.5-6 python2.7-minimal_2.7.5-6 readline-common_6.2+dfsg-0.1 sbuild-build-depends-adios-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-42 sysvinit_2.88dsf-42 sysvinit-utils_2.88dsf-42 tar_1.26+dfsg-6 tzdata_2013c-2 ucf_3.0027+nmu1 util-linux_2.20.1-5.5 vim_2:7.3.923-3 vim-common_2:7.3.923-3 vim-runtime_2:7.3.923-3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue Jan 29 16:29:31 2013 UTC using RSA key ID 5127742C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./adios_1.3-11.dsc dpkg-source: info: extracting adios in adios-1.3 dpkg-source: info: unpacking adios_1.3.orig.tar.gz dpkg-source: info: unpacking adios_1.3-11.debian.tar.gz dpkg-source: info: applying sh4.patch dpkg-source: info: applying mpi_in_place.patch dpkg-source: info: applying nompi_flag.patch dpkg-source: info: applying security.patch dpkg-source: warning: unexpected end of diff `adios-1.3/debian/patches/errno.patch' dpkg-source: info: applying errno.patch dpkg-source: info: applying netcdf-fix.patch Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 1.3-11clang1 User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-251c4133-44ea-4fc4-810d-0a6ba92a2e1a SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package adios dpkg-buildpackage: source version 1.3-11clang1 dpkg-source --before-build adios-1.3 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_clean find . -name '*.pyc' -delete make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean debian/rules build-arch dh build-arch --with python2 dh_testdir -a debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure -- --enable-shared --prefix=`pwd`/debian/tmp MPIFC=mpif77 CC=mpicc checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... mpicc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ANSI C... none needed checking dependency style of mpicc... none checking how to run the C preprocessor... mpicc -E checking for egrep... grep -E checking for preprocessor stringizing operator... yes checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ANSI C... (cached) none needed checking dependency style of mpicc... (cached) none checking whether mpicc and cc understand -c and -o together... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for mpicc... mpicc checking for MPI_Init... yes checking for mpi.h... yes checking for mpic++... mpic++ checking for mpi.h... yes checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking whether f95 understands -c and -o together... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lgcc_s -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for mpif90... mpif77 checking for mpif.h... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether f95 accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fPIC checking if mpicc PIC flag -fPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f95 option to produce PIC... -fPIC checking if f95 PIC flag -fPIC works... yes checking if f95 static flag -static works... yes checking if f95 supports -c -o file.o... yes checking whether the f95 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... mpicc checking mxml.h usability... yes checking mxml.h presence... yes checking for mxml.h... yes checking if mxml code can be linked... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes checking for library containing ibv_alloc_pd... -libverbs checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking portals/portals3.h usability... no checking portals/portals3.h presence... no checking for portals/portals3.h... no checking for p3nal_utcp.h... no checking for p3rt/p3rt.h... no configure: === checking for HDF5 === configure: === checking for Parallel HDF5 === checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking if phdf5 code can be compiled... yes configure: === checking for NetCDF === checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking if netcdf code can be compiled... yes configure: === checking NetCDF 4 Parallel === checking for netcdf.h... (cached) yes checking if nc4 parallel code can be compiled... no checking Attributes.h usability... no checking Attributes.h presence... no checking for Attributes.h... no checking nssi_client.h usability... no checking nssi_client.h presence... no checking for nssi_client.h... no checking dart.h usability... no checking dart.h presence... no checking for dart.h... no checking dimes.h usability... no checking dimes.h presence... no checking for dimes.h... no checking dmalloc.h usability... no checking dmalloc.h presence... no checking for dmalloc.h... no configure: === checking for Lustre === checking for csh... no checking for cygpath... echo Datatap dependency check failed configure: Use PHDF5 for sequential HDF5 tools #### Defined USE_PARALLEL_COMPILER to = [] configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating tests/C/Makefile config.status: creating tests/Fortran/Makefile config.status: creating tests/genarray/Makefile config.status: creating tests/bp_read/Makefile config.status: creating tests/suite/Makefile config.status: creating tests/suite/programs/Makefile config.status: creating utils/Makefile config.status: creating utils/adios_lint/Makefile config.status: creating utils/gpp/Makefile config.status: creating utils/bpdump/Makefile config.status: creating utils/bp2h5/Makefile config.status: creating utils/bp2ncd/Makefile config.status: creating utils/bp2ascii/Makefile config.status: creating utils/bpsplit/Makefile config.status: creating utils/bpls/Makefile config.status: creating utils/bp2bp/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/C/scalars/Makefile config.status: creating examples/C/arrays/Makefile config.status: creating examples/C/attributes/Makefile config.status: creating examples/C/manual/Makefile config.status: creating examples/C/global-array/Makefile config.status: creating examples/C/global-array-time/Makefile config.status: creating examples/C/stat/Makefile config.status: creating examples/C/read_all/Makefile config.status: creating examples/Fortran/Makefile config.status: creating examples/Fortran/scalars/Makefile config.status: creating examples/Fortran/arrays/Makefile config.status: creating examples/Fortran/global-array/Makefile config.status: creating examples/Fortran/global-array-time/Makefile config.status: creating adios_config.flags config.status: creating config.h config.status: executing depfiles commands ********************************* adios configured as follows: ********************************* - General Compile FLAGS - CC = mpicc - CXX = g++ - FC = f95 - CPPFLAGS = -D_FORTIFY_SOURCE=2 - CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security - CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security - FCFLAGS = -g -O2 - LDLAGS = -Wl,-z,relro - LIBS = - MPICC = mpicc - MPICXX = mpic++ - MPIFC = mpif77 - MPILIBS = - No research transport methods - MXML - MXML_CFLAGS = - MXML_CPPFLAGS = - MXML_LDFLAGS = - MXML_LIBS = -lmxml - No LUSTRE - No Portals - INFINIBAND - INFINIBAND_CFLAGS = - INFINIBAND_CPPFLAGS = - INFINIBAND_LDFLAGS = - INFINIBAND_LIBS = -libverbs - No DataTap transport - No DART to build DART transport method - No DIMES to build DIMES transport method - PHDF5 - PHDF5_CFLAGS = - PHDF5_CPPFLAGS = - PHDF5_LDFLAGS = - PHDF5_LIBS = -lhdf5_hl -lhdf5 -lz - HDF5 - HDF5_CFLAGS = - HDF5_CPPFLAGS = - HDF5_LDFLAGS = - HDF5_LIBS = -lhdf5_hl -lhdf5 -lz - No NETCDF 4 Parallel - NetCDF - NETCDF_CFLAGS = - NETCDF_CPPFLAGS = - NETCDF_LDFLAGS = - NETCDF_LIBS = -lnetcdf - No NSSI - SVN version = unknown - Install path = /«PKGBUILDDIR»/debian/tmp make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory `/«PKGBUILDDIR»' Making all in src make[3]: Entering directory `/«PKGBUILDDIR»/src' mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios.o `test -f 'adios.c' || echo './'`adios.c adios.c:244:9: warning: implicit declaration of function 'adios_copy_var_written' is invalid in C99 [-Wimplicit-function-declaration] adios_copy_var_written (&fd->group->vars_written, v, fd); ^ 1 warning generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-common_adios.o `test -f 'common_adios.c' || echo './'`common_adios.c mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_transport_hooks.o `test -f 'adios_transport_hooks.c' || echo './'`adios_transport_hooks.c mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_mpi.o `test -f 'adios_mpi.c' || echo './'`adios_mpi.c mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_mpi_lustre.o `test -f 'adios_mpi_lustre.c' || echo './'`adios_mpi_lustre.c adios_mpi_lustre.c:234:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_lustre.c:260:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:260:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_lustre.c:260:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_lustre.c:281:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:281:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_lustre.c:281:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_lustre.c:299:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_offset")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:299:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_offset")) ^ ( ) adios_mpi_lustre.c:299:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_offset")) ^ == adios_mpi_lustre.c:317:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:317:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:317:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == adios_mpi_lustre.c:364:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "block_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_lustre.c:364:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "block_size")) ^ ( ) adios_mpi_lustre.c:364:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "block_size")) ^ == 6 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_mpi_amr.o `test -f 'adios_mpi_amr.c' || echo './'`adios_mpi_amr.c adios_mpi_amr.c:239:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_count = strstr (temp_string, "stripe_count")) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:239:17: note: place parentheses around the assignment to silence this warning if (p_count = strstr (temp_string, "stripe_count")) ^ ( ) adios_mpi_amr.c:239:17: note: use '==' to turn this assignment into an equality comparison if (p_count = strstr (temp_string, "stripe_count")) ^ == adios_mpi_amr.c:257:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "stripe_size")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:257:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "stripe_size")) ^ ( ) adios_mpi_amr.c:257:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "stripe_size")) ^ == adios_mpi_amr.c:274:16: warning: implicit declaration of function 'umask' is invalid in C99 [-Wimplicit-function-declaration] old_mask = umask(022); ^ adios_mpi_amr.c:346:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_ost")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:346:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_ost")) ^ ( ) adios_mpi_amr.c:346:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_ost")) ^ == adios_mpi_amr.c:363:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "num_aggregators")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:363:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "num_aggregators")) ^ ( ) adios_mpi_amr.c:363:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "num_aggregators")) ^ == adios_mpi_amr.c:388:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "threading")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:388:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "threading")) ^ ( ) adios_mpi_amr.c:388:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "threading")) ^ == adios_mpi_amr.c:409:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "osts_to_skip")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:409:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "osts_to_skip")) ^ ( ) adios_mpi_amr.c:409:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "osts_to_skip")) ^ == adios_mpi_amr.c:424:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p_size = strstr (temp_string, "aggregation_type")) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:424:16: note: place parentheses around the assignment to silence this warning if (p_size = strstr (temp_string, "aggregation_type")) ^ ( ) adios_mpi_amr.c:424:16: note: use '==' to turn this assignment into an equality comparison if (p_size = strstr (temp_string, "aggregation_type")) ^ == adios_mpi_amr.c:740:5: warning: implicit declaration of function 'mkdir' is invalid in C99 [-Wimplicit-function-declaration] mkdir (dir_name, S_IRWXU | S_IRWXG); ^ adios_mpi_amr.c:1078:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (ch = strrchr (fd->name, '/')) ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ adios_mpi_amr.c:1078:20: note: place parentheses around the assignment to silence this warning if (ch = strrchr (fd->name, '/')) ^ ( ) adios_mpi_amr.c:1078:20: note: use '==' to turn this assignment into an equality comparison if (ch = strrchr (fd->name, '/')) ^ == adios_mpi_amr.c:2255:17: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&buffer, &buffer_size, &buffer_offset, flag); ^ adios_mpi_amr.c:1792:13: warning: enumeration value 'adios_mode_update' not handled in switch [-Wswitch] switch (fd->mode) ^ 12 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_posix.o `test -f 'adios_posix.c' || echo './'`adios_posix.c adios_posix.c:745:13: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, fd->buffer, to_write); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_posix.c:766:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, buffer, buffer_size); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_posix.c:1092:21: warning: implicit declaration of function 'adios_write_version_flag_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_write_version_flag_v1 (&global_index_buffer ^ adios_posix.c:1278:21: warning: implicit declaration of function 'adios_sort_index_v1' is invalid in C99 [-Wimplicit-function-declaration] adios_sort_index_v1 (&p->old_pg_root ^ 4 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_posix1.o `test -f 'adios_posix1.c' || echo './'`adios_posix1.c adios_posix1.c:473:13: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, fd->buffer, to_write); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ adios_posix1.c:494:5: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] write (p->b.f, buffer, buffer_size); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. mpicc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_GNU_SOURCE -DPHDF5 -DH5_USE_16_API -DNO_RESEARCH_TRANSPORTS -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libadios_a-adios_internals.o `test -f 'adios_internals.c' || echo './'`adios_internals.c adios_internals.c:605:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_long', 'adios_real'... [-Wswitch] switch (type) ^ adios_internals.c:697:25: warning: 12 enumeration values not handled in switch: 'adios_unknown', 'adios_byte', 'adios_short'... [-Wswitch] switch (type) ^ adios_internals.c:2448:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (type) ^ adios_internals.c:2595:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (var->type) ^ adios_internals.c:2788:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (v->type) ^ adios_internals.c:3206:21: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (vars_root->type) ^ adios_internals.c:3904:13: warning: enumeration value 'adios_unknown' not handled in switch [-Wswitch] switch (v->type) ^ adios_internals.c:4046:9: error: non-void function 'adios_generate_var_characteristics_v1' should return a value [-Wreturn-type] return ; ^ 7 warnings and 1 error generated. make[3]: *** [libadios_a-adios_internals.o] Error 1 make[3]: Leaving directory `/«PKGBUILDDIR»/src' make[2]: *** [all-recursive] Error 1 make[1]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130716-1607 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 9328 Build-Time: 24 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 18 Job: adios_1.3-11 Machine Architecture: amd64 Package: adios Package-Time: 99 Source-Version: 1.3-11 Space: 9328 Status: attempted Version: 1.3-11clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20130716-1607 Build needed 00:01:39, 9328k disc space DC-Status: Failed 100.445507414s DC-Time-Estimation: 100.445507414 versus expected 204 (r/m: 1.0309519584503255 ; m: 100.445507414)