DC-Build-Header: ampliconnoise 1.25-1 / 2013-07-17 19:30:03 +0000 DC-Task: source:ampliconnoise version:1.25-1 architecture:any chroot:unstable esttime:53 logfile:/tmp/ampliconnoise_1.25-1_unstable_clang.log modes:binary-only:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " ampliconnoise_1.25-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-10-232-71-159.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ampliconnoise 1.25-1clang1 (amd64) 17 Jul 2013 19:30 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ampliconnoise Version: 1.25-1clang1 Source Version: 1.25-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ampliconnoise-KT5RTv/ampliconnoise-1.25' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ampliconnoise-KT5RTv' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-8ab0012f-0b80-4486-8a79-4d72df3b7c2e' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [204 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:6 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:7 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:8 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2013-07-17-0833.19.pdiff [1349 B] Get:96 http://localhost:9999 unstable/main amd64 2013-07-17-1433.06.pdiff [16.6 kB] Get:97 http://localhost:9999 unstable/main 2013-07-17-1433.06.pdiff [6373 B] Get:98 http://localhost:9999 unstable/main 2013-07-17-1433.06.pdiff [629 B] Get:99 http://localhost:9999 unstable/main amd64 2013-07-17-1433.06.pdiff [16.6 kB] Get:100 http://localhost:9999 unstable/main 2013-07-17-1433.06.pdiff [629 B] Fetched 659 kB in 59s (11.1 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt cpp-4.7 gcc-4.7 gcc-4.7-base initscripts libapt-pkg4.12 libgcc-4.7-dev linux-libc-dev sysv-rc sysvinit sysvinit-utils 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 17.3 MB of archives. After this operation, 45.1 kB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main sysvinit amd64 2.88dsf-43 [134 kB] Get:2 http://localhost:9999/debian/ unstable/main libapt-pkg4.12 amd64 0.9.9.2 [928 kB] Get:3 http://localhost:9999/debian/ unstable/main apt amd64 0.9.9.2 [1327 kB] Get:4 http://localhost:9999/debian/ unstable/main sysv-rc all 2.88dsf-43 [80.5 kB] Get:5 http://localhost:9999/debian/ unstable/main sysvinit-utils amd64 2.88dsf-43 [103 kB] Get:6 http://localhost:9999/debian/ unstable/main initscripts amd64 2.88dsf-43 [87.2 kB] Get:7 http://localhost:9999/debian/ unstable/main gcc-4.7 amd64 4.7.3-6 [5819 kB] Get:8 http://localhost:9999/debian/ unstable/main cpp-4.7 amd64 4.7.3-6 [5385 kB] Get:9 http://localhost:9999/debian/ unstable/main libgcc-4.7-dev amd64 4.7.3-6 [2465 kB] Get:10 http://localhost:9999/debian/ unstable/main gcc-4.7-base amd64 4.7.3-6 [149 kB] Get:11 http://localhost:9999/debian/ unstable/main linux-libc-dev amd64 3.10.1-1 [869 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.3 MB in 0s (25.3 MB/s) (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysvinit 2.88dsf-41 (using .../sysvinit_2.88dsf-43_amd64.deb) ... Unpacking replacement sysvinit ... Setting up sysvinit (2.88dsf-43) ... Not restarting sysvinit (Reading database ... 13844 files and directories currently installed.) Preparing to replace libapt-pkg4.12:amd64 0.9.9.1 (using .../libapt-pkg4.12_0.9.9.2_amd64.deb) ... Unpacking replacement libapt-pkg4.12:amd64 ... Setting up libapt-pkg4.12:amd64 (0.9.9.2) ... Processing triggers for libc-bin ... (Reading database ... 13844 files and directories currently installed.) Preparing to replace apt 0.9.9.1 (using .../archives/apt_0.9.9.2_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.9.2) ... gpg: key B98321F9: "Squeeze Stable Release Key " not changed gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) " not changed gpg: key 65FFB764: "Wheezy Stable Release Key " not changed gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysv-rc 2.88dsf-41 (using .../sysv-rc_2.88dsf-43_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace sysvinit-utils 2.88dsf-41 (using .../sysvinit-utils_2.88dsf-43_amd64.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.88dsf-43) ... Setting up sysv-rc (2.88dsf-43) ... (Reading database ... 13844 files and directories currently installed.) Preparing to replace initscripts 2.88dsf-41 (using .../initscripts_2.88dsf-43_amd64.deb) ... Removing unmodified and obsolete conffile /etc/init.d/mtab.sh ... Unpacking replacement initscripts ... Setting up initscripts (2.88dsf-43) ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/checkroot-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/rmnologin ... Installing new version of config file /etc/network/if-up.d/mountnfs ... (Reading database ... 13843 files and directories currently installed.) Preparing to replace gcc-4.7 4.7.3-5 (using .../gcc-4.7_4.7.3-6_amd64.deb) ... Unpacking replacement gcc-4.7 ... Preparing to replace cpp-4.7 4.7.3-5 (using .../cpp-4.7_4.7.3-6_amd64.deb) ... Unpacking replacement cpp-4.7 ... Preparing to replace libgcc-4.7-dev:amd64 4.7.3-5 (using .../libgcc-4.7-dev_4.7.3-6_amd64.deb) ... Unpacking replacement libgcc-4.7-dev:amd64 ... Preparing to replace gcc-4.7-base:amd64 4.7.3-5 (using .../gcc-4.7-base_4.7.3-6_amd64.deb) ... Unpacking replacement gcc-4.7-base:amd64 ... Preparing to replace linux-libc-dev:amd64 3.9.8-1 (using .../linux-libc-dev_3.10.1-1_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Setting up gcc-4.7-base:amd64 (4.7.3-6) ... Setting up cpp-4.7 (4.7.3-6) ... Setting up libgcc-4.7-dev:amd64 (4.7.3-6) ... Setting up gcc-4.7 (4.7.3-6) ... Setting up linux-libc-dev:amd64 (3.10.1-1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'ampliconnoise' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/ampliconnoise/trunk/ Need to get 1200 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main ampliconnoise 1.25-1 (dsc) [1438 B] Get:2 http://localhost:9999/debian/ unstable/main ampliconnoise 1.25-1 (tar) [1193 kB] Get:3 http://localhost:9999/debian/ unstable/main ampliconnoise 1.25-1 (diff) [6343 B] Fetched 1200 kB in 0s (2741 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Install of clang' Install of clang + apt-get update Hit http://localhost:9999 unstable InRelease Hit http://localhost:9999 unstable/main Sources/DiffIndex Hit http://localhost:9999 unstable/main amd64 Packages/DiffIndex Hit http://localhost:9999 unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.3 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev Suggested packages: libstdc++6-4.7-doc Recommended packages: llvm-3.3-dev python The following NEW packages will be installed: clang-3.3 libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 27.2 MB of archives. After this operation, 80.8 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.0.13-4 [21.6 kB] Get:2 http://localhost:9999/debian/ unstable/main libllvm3.3 amd64 1:3.3-3 [8575 kB] Get:3 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.8.1-6 [160 kB] Get:4 http://localhost:9999/debian/ unstable/main libstdc++6-4.7-dev amd64 4.7.3-6 [1694 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc-4.7-dev amd64 4.7.3-6 [719 kB] Get:6 http://localhost:9999/debian/ unstable/main libclang-common-3.3-dev amd64 1:3.3-3 [574 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.3 amd64 1:3.3-3 [4579 kB] Get:8 http://localhost:9999/debian/ unstable/main clang-3.3 amd64 1:3.3-3 [10.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.2 MB in 1s (25.8 MB/s) Selecting previously unselected package libffi6:amd64. (Reading database ... 13846 files and directories currently installed.) Unpacking libffi6:amd64 (from .../libffi6_3.0.13-4_amd64.deb) ... Selecting previously unselected package libllvm3.3:amd64. Unpacking libllvm3.3:amd64 (from .../libllvm3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.8.1-6_amd64.deb) ... Selecting previously unselected package libstdc++6-4.7-dev:amd64. Unpacking libstdc++6-4.7-dev:amd64 (from .../libstdc++6-4.7-dev_4.7.3-6_amd64.deb) ... Selecting previously unselected package libobjc-4.7-dev:amd64. Unpacking libobjc-4.7-dev:amd64 (from .../libobjc-4.7-dev_4.7.3-6_amd64.deb) ... Selecting previously unselected package libclang-common-3.3-dev. Unpacking libclang-common-3.3-dev (from .../libclang-common-3.3-dev_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libclang1-3.3. Unpacking libclang1-3.3 (from .../libclang1-3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package clang-3.3. Unpacking clang-3.3 (from .../clang-3.3_1%3a3.3-3_amd64.deb) ... Setting up libffi6:amd64 (3.0.13-4) ... Setting up libllvm3.3:amd64 (1:3.3-3) ... Setting up libobjc4:amd64 (4.8.1-6) ... Setting up libstdc++6-4.7-dev:amd64 (4.7.3-6) ... Setting up libobjc-4.7-dev:amd64 (4.7.3-6) ... Setting up libclang-common-3.3-dev (1:3.3-3) ... Setting up libclang1-3.3 (1:3.3-3) ... Setting up clang-3.3 (1:3.3-3) ... Processing triggers for libc-bin ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 + ln -s clang++ g++-4.8 + ln -s clang gcc-4.8 + ln -s clang cpp-4.8 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'gcc-4.8 hold' + dpkg --set-selections + echo 'cpp-4.8 hold' + dpkg --set-selections + echo 'g++-4.8 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-y9Y64n/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/710 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), quilt (>= 0.46-7~), debhelper (>= 7.1~), libgsl0-dev, libopenmpi-dev (>= 1.4) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), quilt (>= 0.46-7~), debhelper (>= 7.1~), libgsl0-dev, libopenmpi-dev (>= 1.4) dpkg-deb: building package `sbuild-build-depends-ampliconnoise-dummy' in `/«BUILDDIR»/resolver-WZVUZ0/apt_archive/sbuild-build-depends-ampliconnoise-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ampliconnoise build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bsdmainutils debhelper diffstat file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libgfortran3 libglib2.0-0 libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libtorque2 libunistring0 libxml2 man-db openmpi-common po-debconf quilt Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: adduser bsdmainutils debhelper diffstat file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libgfortran3 libglib2.0-0 libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libtorque2 libunistring0 libxml2 man-db openmpi-common po-debconf quilt sbuild-build-depends-ampliconnoise-dummy 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 17.0 MB/17.0 MB of archives. After this operation, 55.0 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.2.4-1 [41.0 kB] Get:2 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-3 [747 kB] Get:3 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:4 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.5-2 [976 kB] Get:5 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.18.3-1 [29.6 kB] Get:6 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.14-2 [216 kB] Get:7 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-2 [911 kB] Get:8 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.36.3-3 [2048 kB] Get:9 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-2 [133 kB] Get:10 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.8.1-6 [345 kB] Get:11 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:12 http://localhost:9999/debian/ unstable/main adduser all 3.113+nmu3 [264 kB] Get:13 http://localhost:9999/debian/ unstable/main file amd64 1:5.14-2 [54.0 kB] Get:14 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.18.3-1 [161 kB] Get:15 http://localhost:9999/debian/ unstable/main gettext amd64 0.18.3-1 [1898 kB] Get:16 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:17 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:18 http://localhost:9999/debian/ unstable/main debhelper all 9.20130630 [710 kB] Get:19 http://localhost:9999/debian/ unstable/main diffstat amd64 1.55-3 [30.0 kB] Get:20 http://localhost:9999/debian/ unstable/main libgsl0ldbl amd64 1.15+dfsg.2-2 [1132 kB] Get:21 http://localhost:9999/debian/ unstable/main libgsl0-dev amd64 1.15+dfsg.2-2 [1404 kB] Get:22 http://localhost:9999/debian/ unstable/main libnuma1 amd64 2.0.8-3 [34.5 kB] Get:23 http://localhost:9999/debian/ unstable/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB] Get:24 http://localhost:9999/debian/ unstable/main quilt all 0.60-8 [381 kB] Get:25 http://localhost:9999/debian/ unstable/main libibverbs1 amd64 1.1.7-1 [35.4 kB] Get:26 http://localhost:9999/debian/ unstable/main libibverbs-dev amd64 1.1.7-1 [86.1 kB] Get:27 http://localhost:9999/debian/ unstable/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:28 http://localhost:9999/debian/ unstable/main openmpi-common all 1.4.5-1 [101 kB] Get:29 http://localhost:9999/debian/ unstable/main libopenmpi-dev amd64 1.4.5-1 [2778 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.0 MB in 0s (21.5 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 14701 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.4-1_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.3-1_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.9.1+dfsg1-2_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. 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Unpacking quilt (from .../archives/quilt_0.60-8_all.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.7-1_amd64.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.7-1_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_amd64.deb) ... Selecting previously unselected package sbuild-build-depends-ampliconnoise-dummy. Unpacking sbuild-build-depends-ampliconnoise-dummy (from .../sbuild-build-depends-ampliconnoise-dummy.deb) ... Setting up libpipeline1:amd64 (1.2.4-1) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.18.3-1) ... Setting up libmagic1:amd64 (1:5.14-2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-2) ... Setting up libglib2.0-0:amd64 (2.36.3-3) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up libgfortran3:amd64 (4.8.1-6) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up adduser (3.113+nmu3) ... Setting up file (1:5.14-2) ... Setting up gettext-base (0.18.3-1) ... Setting up gettext (0.18.3-1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20130630) ... Setting up diffstat (1.55-3) ... Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libgsl0-dev (1.15+dfsg.2-2) ... Setting up libnuma1 (2.0.8-3) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up quilt (0.60-8) ... Setting up libibverbs1 (1.1.7-1) ... Setting up libibverbs-dev (1.1.7-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up libopenmpi-dev (1.4.5-1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up sbuild-build-depends-ampliconnoise-dummy (0.invalid.0) ... Processing triggers for libc-bin ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.23.52.20130620-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc-4.6_4.6.4-4 gcc-4.7_4.7.3-6 gcc-4.8_4.8.1-6 libc6-dev_2.17-7 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-6 linux-libc-dev_3.10.1-1 Package versions: adduser_3.113+nmu3 apt_0.9.9.2 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130620-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-4 clang-3.3_1:3.3-3 coreutils_8.20-3 cpp_4:4.8.1-2 cpp-4.6_4.6.4-4 cpp-4.7_4.7.3-6 cpp-4.8_4.8.1-6 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debian-archive-keyring_2012.4 debianutils_4.3.4 diffstat_1.55-3 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.19-2 file_1:5.14-2 findutils_4.4.2-6 g++_4:4.8.1-2 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc_4:4.8.1-2 gcc-4.4-base_4.4.7-4 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-4 gcc-4.6-base_4.6.4-4 gcc-4.7_4.7.3-6 gcc-4.7-base_4.7.3-6 gcc-4.8_4.8.1-6 gcc-4.8-base_4.8.1-6 gettext_0.18.3-1 gettext-base_0.18.3-1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hostname_3.13 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.52-1 libapt-pkg4.12_0.9.9.2 libasan0_4.8.1-6 libasprintf0c2_0.18.3-1 libatomic1_4.8.1-6 libattr1_1:2.4.47-1 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-4 libc-bin_2.17-7 libc-dev-bin_2.17-7 libc6_2.17-7 libc6-dev_2.17-7 libcap2_1:2.22-1.2 libclang-common-3.3-dev_1:3.3-3 libclang1-3.3_1:3.3-3 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.0-2 libcloog-ppl1_0.16.1-3 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdpkg-perl_1.16.10 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.2d-5 libgcc-4.7-dev_4.7.3-6 libgcc-4.8-dev_4.8.1-6 libgcc1_1:4.8.1-6 libgdbm3_1.8.3-12 libgfortran3_4.8.1-6 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-2 libgmpxx4ldbl_2:5.1.2+dfsg-2 libgomp1_4.8.1-6 libgpm2_1.20.4-6.1 libgsl0-dev_1.15+dfsg.2-2 libgsl0ldbl_1.15+dfsg.2-2 libibverbs-dev_1.1.7-1 libibverbs1_1.1.7-1 libisl10_0.11.2-1 libitm1_4.8.1-6 libllvm3.3_1:3.3-3 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libnuma1_2.0.8-3 libobjc-4.7-dev_4.7.3-6 libobjc4_4.8.1-6 libopenmpi-dev_1.4.5-1 libopenmpi1.3_1.4.5-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libquadmath0_4.8.1-6 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libss2_1.42.8-1 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-6 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libtorque2_2.4.16+dfsg-1 libtsan0_4.8.1-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-2 linux-libc-dev_3.10.1-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12 make_3.81-8.2 man-db_2.6.5-2 mawk_1.3.3-17 mount_2.20.1-5.5 multiarch-support_2.17-7 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 openmpi-common_1.4.5-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 quilt_0.60-8 readline-common_6.2+dfsg-0.1 sbuild-build-depends-ampliconnoise-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-6 tzdata_2013c-2 ucf_3.0027+nmu1 util-linux_2.20.1-5.5 vim_2:7.3.923-3 vim-common_2:7.3.923-3 vim-runtime_2:7.3.923-3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Aug 21 11:16:25 2011 UTC using DSA key ID BE9D5339 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ampliconnoise_1.25-1.dsc dpkg-source: info: extracting ampliconnoise in ampliconnoise-1.25 dpkg-source: info: unpacking ampliconnoise_1.25.orig.tar.gz dpkg-source: info: unpacking ampliconnoise_1.25-1.debian.tar.gz dpkg-source: info: applying fix-path-for-data.patch Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 1.25-1clang1 User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-8ab0012f-0b80-4486-8a79-4d72df3b7c2e SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package ampliconnoise dpkg-buildpackage: source version 1.25-1clang1 dpkg-source --before-build ampliconnoise-1.25 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh --with quilt clean dh_testdir dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' (cd FCluster && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/FCluster' rm -rf *o FCluster make[2]: Leaving directory `/«PKGBUILDDIR»/FCluster' (cd FClusterM && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/FClusterM' rm -rf *o FClusterM make[2]: Leaving directory `/«PKGBUILDDIR»/FClusterM' (cd FastaUnique && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/FastaUnique' rm -rf *.o FastaUnique make[2]: Leaving directory `/«PKGBUILDDIR»/FastaUnique' (cd NDist && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/NDist' rm -rf *.o NDist make[2]: Leaving directory `/«PKGBUILDDIR»/NDist' (cd PyroDist && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/PyroDist' rm -rf *.o PyroDist make[2]: Leaving directory `/«PKGBUILDDIR»/PyroDist' (cd PyroNoise && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/PyroNoise' rm -rf *.o PyroNoise make[2]: Leaving directory `/«PKGBUILDDIR»/PyroNoise' (cd PyroNoiseM && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/PyroNoiseM' rm -rf *.o PyroNoiseM make[2]: Leaving directory `/«PKGBUILDDIR»/PyroNoiseM' (cd SeqDist && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/SeqDist' rm -rf *.o SeqDist make[2]: Leaving directory `/«PKGBUILDDIR»/SeqDist' (cd SeqNoise && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/SeqNoise' rm -rf *.o SeqNoise make[2]: Leaving directory `/«PKGBUILDDIR»/SeqNoise' (cd SeqDistM && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/SeqDistM' rm -rf *.o SeqDistM make[2]: Leaving directory `/«PKGBUILDDIR»/SeqDistM' (cd SeqNoiseM && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/SeqNoiseM' rm -rf *.o SeqNoise make[2]: Leaving directory `/«PKGBUILDDIR»/SeqNoiseM' (cd SplitClusterEven && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/SplitClusterEven' rm -rf *.o SplitClusterEven make[2]: Leaving directory `/«PKGBUILDDIR»/SplitClusterEven' (cd Perseus && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/Perseus' rm -rf *.o Perseus make[2]: Leaving directory `/«PKGBUILDDIR»/Perseus' (cd PerseusD && make clean) make[2]: Entering directory `/«PKGBUILDDIR»/PerseusD' rm -rf *.o PerseusD make[2]: Leaving directory `/«PKGBUILDDIR»/PerseusD' (cd bin && rm -rf *) make[1]: Leaving directory `/«PKGBUILDDIR»' dh_quilt_unpatch Removing patch fix-path-for-data.patch Restoring PyroDist/PyroDist.h Restoring Perseus/Perseus.h Restoring PyroNoise/PyroNoise.h Restoring PyroNoiseM/PyroNoiseM.h Restoring SeqNoiseM/SeqNoiseM.h Restoring SeqDist/SeqDist.h Restoring SeqDistM/SeqDistM.h Restoring SeqNoise/SeqNoise.h No patches applied debian/rules override_dh_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_clean rm -f *.o SeqNoiseM/SeqNoiseM rm -f *.1 make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules build-arch dh --with quilt build-arch dh_testdir -a dh_quilt_patch -a Applying patch fix-path-for-data.patch patching file SeqNoise/SeqNoise.h patching file SeqDistM/SeqDistM.h patching file SeqDist/SeqDist.h patching file SeqNoiseM/SeqNoiseM.h patching file PyroNoiseM/PyroNoiseM.h patching file PyroNoise/PyroNoise.h patching file Perseus/Perseus.h patching file PyroDist/PyroDist.h Now at patch fix-path-for-data.patch dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/«PKGBUILDDIR»' (cd FCluster && make) make[2]: Entering directory `/«PKGBUILDDIR»/FCluster' cc -O3 -c FCluster.c FCluster.c:675:3: error: non-void function 'outputCluster' should return a value [-Wreturn-type] return; ^ 1 error generated. make[2]: *** [FCluster.o] Error 1 make[2]: Leaving directory `/«PKGBUILDDIR»/FCluster' make[1]: *** [all] Error 2 dh_auto_build: make -j1 returned exit code 2 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 make[1]: Leaving directory `/«PKGBUILDDIR»' ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130717-1931 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 5236 Build-Time: 3 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: ampliconnoise_1.25-1 Machine Architecture: amd64 Package: ampliconnoise Package-Time: 95 Source-Version: 1.25-1 Space: 5236 Status: attempted Version: 1.25-1clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20130717-1931 Build needed 00:01:35, 5236k disc space DC-Status: Failed 96.362588557s