DC-Build-Header: biococoa 2.2.2-1 / 2013-07-17 12:16:47 +0000 DC-Task: source:biococoa version:2.2.2-1 architecture:any chroot:unstable esttime:65 logfile:/tmp/biococoa_2.2.2-1_unstable_clang.log modes:binary-only:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " biococoa_2.2.2-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-10-232-71-159.ec2.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ biococoa 2.2.2-1clang1 (amd64) 17 Jul 2013 12:16 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: biococoa Version: 2.2.2-1clang1 Source Version: 2.2.2-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/biococoa-l9ft3_/biococoa-2.2.2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/biococoa-l9ft3_' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-ce995581-4de5-4b5b-b243-3067be0c9238' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [204 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:6 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:7 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [23.1 kB] Get:8 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [1809 B] Get:9 http://localhost:9999 unstable/main amd64 2013-07-13-2032.15.pdiff [16.9 kB] Get:10 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [12.9 kB] Get:11 http://localhost:9999 unstable/main 2013-07-13-2032.15.pdiff [1809 B] Get:12 http://localhost:9999 unstable/main amd64 2013-07-14-0231.07.pdiff [14.9 kB] Get:13 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [12.9 kB] Get:14 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [1384 B] Get:15 http://localhost:9999 unstable/main amd64 2013-07-14-0231.07.pdiff [14.9 kB] Get:16 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [4670 B] Get:17 http://localhost:9999 unstable/main 2013-07-14-0231.07.pdiff [1384 B] Get:18 http://localhost:9999 unstable/main amd64 2013-07-14-0832.16.pdiff [1624 B] Get:19 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [4670 B] Get:20 http://localhost:9999 unstable/main 2013-07-14-0832.16.pdiff [337 B] Get:21 http://localhost:9999 unstable/main amd64 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2013-07-16-0834.41.pdiff [5852 B] Get:72 http://localhost:9999 unstable/main amd64 2013-07-16-1433.54.pdiff [19.3 kB] Get:73 http://localhost:9999 unstable/main 2013-07-16-1433.54.pdiff [21.2 kB] Get:74 http://localhost:9999 unstable/main 2013-07-16-1433.54.pdiff [1941 B] Get:75 http://localhost:9999 unstable/main amd64 2013-07-16-1433.54.pdiff [19.3 kB] Get:76 http://localhost:9999 unstable/main 2013-07-16-2046.09.pdiff [19.4 kB] Get:77 http://localhost:9999 unstable/main 2013-07-16-1433.54.pdiff [1941 B] Get:78 http://localhost:9999 unstable/main amd64 2013-07-16-2046.09.pdiff [18.4 kB] Get:79 http://localhost:9999 unstable/main 2013-07-16-2046.09.pdiff [19.4 kB] Get:80 http://localhost:9999 unstable/main 2013-07-16-2046.09.pdiff [465 B] Get:81 http://localhost:9999 unstable/main amd64 2013-07-16-2046.09.pdiff [18.4 kB] Get:82 http://localhost:9999 unstable/main 2013-07-17-0233.52.pdiff [6503 B] Get:83 http://localhost:9999 unstable/main 2013-07-16-2046.09.pdiff [465 B] Get:84 http://localhost:9999 unstable/main amd64 2013-07-17-0233.52.pdiff [10.9 kB] Get:85 http://localhost:9999 unstable/main 2013-07-17-0233.52.pdiff [6503 B] Get:86 http://localhost:9999 unstable/main 2013-07-17-0233.52.pdiff [2433 B] Get:87 http://localhost:9999 unstable/main amd64 2013-07-17-0233.52.pdiff [10.9 kB] Get:88 http://localhost:9999 unstable/main 2013-07-17-0833.19.pdiff [6945 B] Get:89 http://localhost:9999 unstable/main 2013-07-17-0233.52.pdiff [2433 B] Get:90 http://localhost:9999 unstable/main amd64 2013-07-17-0833.19.pdiff [7401 B] Get:91 http://localhost:9999 unstable/main 2013-07-17-0833.19.pdiff [6945 B] Get:92 http://localhost:9999 unstable/main 2013-07-17-0833.19.pdiff [1349 B] Get:93 http://localhost:9999 unstable/main amd64 2013-07-17-0833.19.pdiff [7401 B] Get:94 http://localhost:9999 unstable/main 2013-07-17-0833.19.pdiff [1349 B] Fetched 635 kB in 55s (11.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: cpp-4.7 gcc-4.7 gcc-4.7-base initscripts libgcc-4.7-dev linux-libc-dev sysv-rc sysvinit sysvinit-utils 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 15.1 MB of archives. After this operation, 43.0 kB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main sysvinit amd64 2.88dsf-43 [134 kB] Get:2 http://localhost:9999/debian/ unstable/main sysv-rc all 2.88dsf-43 [80.5 kB] Get:3 http://localhost:9999/debian/ unstable/main sysvinit-utils amd64 2.88dsf-43 [103 kB] Get:4 http://localhost:9999/debian/ unstable/main initscripts amd64 2.88dsf-43 [87.2 kB] Get:5 http://localhost:9999/debian/ unstable/main gcc-4.7 amd64 4.7.3-6 [5819 kB] Get:6 http://localhost:9999/debian/ unstable/main cpp-4.7 amd64 4.7.3-6 [5385 kB] Get:7 http://localhost:9999/debian/ unstable/main libgcc-4.7-dev amd64 4.7.3-6 [2465 kB] Get:8 http://localhost:9999/debian/ unstable/main gcc-4.7-base amd64 4.7.3-6 [149 kB] Get:9 http://localhost:9999/debian/ unstable/main linux-libc-dev amd64 3.10.1-1 [869 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.1 MB in 0s (23.8 MB/s) (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysvinit 2.88dsf-41 (using .../sysvinit_2.88dsf-43_amd64.deb) ... Unpacking replacement sysvinit ... Setting up sysvinit (2.88dsf-43) ... Not restarting sysvinit (Reading database ... 13844 files and directories currently installed.) Preparing to replace sysv-rc 2.88dsf-41 (using .../sysv-rc_2.88dsf-43_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace sysvinit-utils 2.88dsf-41 (using .../sysvinit-utils_2.88dsf-43_amd64.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.88dsf-43) ... Setting up sysv-rc (2.88dsf-43) ... (Reading database ... 13844 files and directories currently installed.) Preparing to replace initscripts 2.88dsf-41 (using .../initscripts_2.88dsf-43_amd64.deb) ... Removing unmodified and obsolete conffile /etc/init.d/mtab.sh ... Unpacking replacement initscripts ... Setting up initscripts (2.88dsf-43) ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/checkroot-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/rmnologin ... Installing new version of config file /etc/network/if-up.d/mountnfs ... (Reading database ... 13843 files and directories currently installed.) Preparing to replace gcc-4.7 4.7.3-5 (using .../gcc-4.7_4.7.3-6_amd64.deb) ... Unpacking replacement gcc-4.7 ... Preparing to replace cpp-4.7 4.7.3-5 (using .../cpp-4.7_4.7.3-6_amd64.deb) ... Unpacking replacement cpp-4.7 ... Preparing to replace libgcc-4.7-dev:amd64 4.7.3-5 (using .../libgcc-4.7-dev_4.7.3-6_amd64.deb) ... Unpacking replacement libgcc-4.7-dev:amd64 ... Preparing to replace gcc-4.7-base:amd64 4.7.3-5 (using .../gcc-4.7-base_4.7.3-6_amd64.deb) ... Unpacking replacement gcc-4.7-base:amd64 ... Preparing to replace linux-libc-dev:amd64 3.9.8-1 (using .../linux-libc-dev_3.10.1-1_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Setting up gcc-4.7-base:amd64 (4.7.3-6) ... Setting up cpp-4.7 (4.7.3-6) ... Setting up libgcc-4.7-dev:amd64 (4.7.3-6) ... Setting up gcc-4.7 (4.7.3-6) ... Setting up linux-libc-dev:amd64 (3.10.1-1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'biococoa' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/svn/debian-med/trunk/packages/biococoa/trunk/ Need to get 370 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main biococoa 2.2.2-1 (dsc) [1423 B] Get:2 http://localhost:9999/debian/ unstable/main biococoa 2.2.2-1 (tar) [359 kB] Get:3 http://localhost:9999/debian/ unstable/main biococoa 2.2.2-1 (diff) [9638 B] Fetched 370 kB in 0s (1524 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Install of clang' Install of clang + apt-get update Hit http://localhost:9999 unstable InRelease Hit http://localhost:9999 unstable/main Sources/DiffIndex Hit http://localhost:9999 unstable/main amd64 Packages/DiffIndex Hit http://localhost:9999 unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.3 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev Suggested packages: libstdc++6-4.7-doc Recommended packages: llvm-3.3-dev python The following NEW packages will be installed: clang-3.3 libclang-common-3.3-dev libclang1-3.3 libffi6 libllvm3.3 libobjc-4.7-dev libobjc4 libstdc++6-4.7-dev 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 27.2 MB of archives. After this operation, 80.8 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.0.13-4 [21.6 kB] Get:2 http://localhost:9999/debian/ unstable/main libllvm3.3 amd64 1:3.3-3 [8575 kB] Get:3 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.8.1-6 [160 kB] Get:4 http://localhost:9999/debian/ unstable/main libstdc++6-4.7-dev amd64 4.7.3-6 [1694 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc-4.7-dev amd64 4.7.3-6 [719 kB] Get:6 http://localhost:9999/debian/ unstable/main libclang-common-3.3-dev amd64 1:3.3-3 [574 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.3 amd64 1:3.3-3 [4579 kB] Get:8 http://localhost:9999/debian/ unstable/main clang-3.3 amd64 1:3.3-3 [10.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.2 MB in 1s (25.7 MB/s) Selecting previously unselected package libffi6:amd64. (Reading database ... 13846 files and directories currently installed.) Unpacking libffi6:amd64 (from .../libffi6_3.0.13-4_amd64.deb) ... Selecting previously unselected package libllvm3.3:amd64. Unpacking libllvm3.3:amd64 (from .../libllvm3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.8.1-6_amd64.deb) ... Selecting previously unselected package libstdc++6-4.7-dev:amd64. Unpacking libstdc++6-4.7-dev:amd64 (from .../libstdc++6-4.7-dev_4.7.3-6_amd64.deb) ... Selecting previously unselected package libobjc-4.7-dev:amd64. Unpacking libobjc-4.7-dev:amd64 (from .../libobjc-4.7-dev_4.7.3-6_amd64.deb) ... Selecting previously unselected package libclang-common-3.3-dev. Unpacking libclang-common-3.3-dev (from .../libclang-common-3.3-dev_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package libclang1-3.3. Unpacking libclang1-3.3 (from .../libclang1-3.3_1%3a3.3-3_amd64.deb) ... Selecting previously unselected package clang-3.3. Unpacking clang-3.3 (from .../clang-3.3_1%3a3.3-3_amd64.deb) ... Setting up libffi6:amd64 (3.0.13-4) ... Setting up libllvm3.3:amd64 (1:3.3-3) ... Setting up libobjc4:amd64 (4.8.1-6) ... Setting up libstdc++6-4.7-dev:amd64 (4.7.3-6) ... Setting up libobjc-4.7-dev:amd64 (4.7.3-6) ... Setting up libclang-common-3.3-dev (1:3.3-3) ... Setting up libclang1-3.3 (1:3.3-3) ... Setting up clang-3.3 (1:3.3-3) ... Processing triggers for libc-bin ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 + ln -s clang++ g++-4.8 + ln -s clang gcc-4.8 + ln -s clang cpp-4.8 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'gcc-4.8 hold' + dpkg --set-selections + echo 'cpp-4.8 hold' + dpkg --set-selections + echo 'g++-4.8 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-QXF2ob/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/706 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14701 files and directories currently installed.) Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper, libgnustep-base-dev (>= 1.16.1), quilt Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper, libgnustep-base-dev (>= 1.16.1), quilt dpkg-deb: building package `sbuild-build-depends-biococoa-dummy' in `/«BUILDDIR»/resolver-2X1STa/apt_archive/sbuild-build-depends-biococoa-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install biococoa build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-make gobjc gobjc-4.8 groff-base intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libdbus-1-3 libgcrypt11 libglib2.0-0 libgnustep-base-dev libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libmagic1 libobjc-4.8-dev libp11-kit0 libpipeline1 libtasn1-3 libunistring0 libxml2 libxslt1.1 man-db po-debconf quilt sgml-base xml-core Suggested packages: wamerican wordlist whois vacation devscripts dh-make gettext-doc gnustep-base-doc gnustep-make-doc gobjc-multilib gobjc-4.8-multilib gcc-4.8-doc libobjc4-dbg groff rng-tools less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent sgml-base-doc Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev dbus libglib2.0-data shared-mime-info libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils cdbs debhelper diffstat file gettext gettext-base gnustep-base-common gnustep-base-runtime gnustep-common gnustep-make gobjc gobjc-4.8 groff-base intltool-debian libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libcroco3 libdbus-1-3 libgcrypt11 libglib2.0-0 libgnustep-base-dev libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libmagic1 libobjc-4.8-dev libp11-kit0 libpipeline1 libtasn1-3 libunistring0 libxml2 libxslt1.1 man-db po-debconf quilt sbuild-build-depends-biococoa-dummy sgml-base xml-core 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 27.1 MB/27.1 MB of archives. After this operation, 90.2 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.2.4-1 [41.0 kB] Get:2 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-3 [747 kB] Get:3 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:4 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.5-2 [976 kB] Get:5 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.18.3-1 [29.6 kB] Get:6 http://localhost:9999/debian/ unstable/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:7 http://localhost:9999/debian/ unstable/main libgcrypt11 amd64 1.5.2-3 [296 kB] Get:8 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.18.4-1 [115 kB] Get:9 http://localhost:9999/debian/ unstable/main libtasn1-3 amd64 2.14-3 [68.5 kB] Get:10 http://localhost:9999/debian/ unstable/main libgnutls26 amd64 2.12.23-5 [617 kB] Get:11 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.14-2 [216 kB] Get:12 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-2 [911 kB] Get:13 http://localhost:9999/debian/ unstable/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:14 http://localhost:9999/debian/ unstable/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:15 http://localhost:9999/debian/ unstable/main libdbus-1-3 amd64 1.6.12-1 [172 kB] Get:16 http://localhost:9999/debian/ unstable/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:17 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.36.3-3 [2048 kB] Get:18 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-2 [133 kB] Get:19 http://localhost:9999/debian/ unstable/main libicu48 amd64 4.8.1.1-12 [4734 kB] Get:20 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:21 http://localhost:9999/debian/ unstable/main libxslt1.1 amd64 1.1.26-14.1 [254 kB] Get:22 http://localhost:9999/debian/ unstable/main sgml-base all 1.26+nmu4 [14.6 kB] Get:23 http://localhost:9999/debian/ unstable/main file amd64 1:5.14-2 [54.0 kB] Get:24 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.18.3-1 [161 kB] Get:25 http://localhost:9999/debian/ unstable/main autotools-dev all 20130515.1 [73.0 kB] Get:26 http://localhost:9999/debian/ unstable/main cdbs all 0.4.122 [81.4 kB] Get:27 http://localhost:9999/debian/ unstable/main gettext amd64 0.18.3-1 [1898 kB] Get:28 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:29 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:30 http://localhost:9999/debian/ unstable/main debhelper all 9.20130630 [710 kB] Get:31 http://localhost:9999/debian/ unstable/main diffstat amd64 1.55-3 [30.0 kB] Get:32 http://localhost:9999/debian/ unstable/main gnustep-common amd64 2.6.2-2.1 [120 kB] Get:33 http://localhost:9999/debian/ unstable/main xml-core all 0.13+nmu2 [24.2 kB] Get:34 http://localhost:9999/debian/ unstable/main gnustep-base-common all 1.22.1-4.1 [206 kB] Get:35 http://localhost:9999/debian/ unstable/main libgnustep-base1.22 amd64 1.22.1-4.1 [1535 kB] Get:36 http://localhost:9999/debian/ unstable/main gnustep-base-runtime amd64 1.22.1-4.1 [232 kB] Get:37 http://localhost:9999/debian/ unstable/main libobjc-4.8-dev amd64 4.8.1-6 [760 kB] Get:38 http://localhost:9999/debian/ unstable/main gobjc-4.8 amd64 4.8.1-6 [5598 kB] Get:39 http://localhost:9999/debian/ unstable/main gobjc amd64 4:4.8.1-2 [850 B] Get:40 http://localhost:9999/debian/ unstable/main gnustep-make all 2.6.2-2.1 [231 kB] Get:41 http://localhost:9999/debian/ unstable/main libgnustep-base-dev amd64 1.22.1-4.1 [2399 kB] Get:42 http://localhost:9999/debian/ unstable/main quilt all 0.60-8 [381 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.1 MB in 1s (22.6 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 14701 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.4-1_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.3-1_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.2-3_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.18.4-1_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.14-3_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.23-5_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.9.1+dfsg1-2_amd64.deb) ... Selecting previously unselected package libavahi-common-data:amd64. Unpacking libavahi-common-data:amd64 (from .../libavahi-common-data_0.6.31-2_amd64.deb) ... Selecting previously unselected package libavahi-common3:amd64. Unpacking libavahi-common3:amd64 (from .../libavahi-common3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libdbus-1-3:amd64. Unpacking libdbus-1-3:amd64 (from .../libdbus-1-3_1.6.12-1_amd64.deb) ... Selecting previously unselected package libavahi-client3:amd64. Unpacking libavahi-client3:amd64 (from .../libavahi-client3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.36.3-3_amd64.deb) ... Selecting previously unselected package libcroco3:amd64. Unpacking libcroco3:amd64 (from .../libcroco3_0.6.8-2_amd64.deb) ... Selecting previously unselected package libicu48:amd64. Unpacking libicu48:amd64 (from .../libicu48_4.8.1.1-12_amd64.deb) ... Selecting previously unselected package libunistring0:amd64. Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libxslt1.1:amd64. Unpacking libxslt1.1:amd64 (from .../libxslt1.1_1.1.26-14.1_amd64.deb) ... Selecting previously unselected package sgml-base. Unpacking sgml-base (from .../sgml-base_1.26+nmu4_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_1%3a5.14-2_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.3-1_amd64.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20130515.1_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../archives/cdbs_0.4.122_all.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.3-1_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130630_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.55-3_amd64.deb) ... Selecting previously unselected package gnustep-common. Unpacking gnustep-common (from .../gnustep-common_2.6.2-2.1_amd64.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ... Selecting previously unselected package gnustep-base-common. Unpacking gnustep-base-common (from .../gnustep-base-common_1.22.1-4.1_all.deb) ... Selecting previously unselected package libgnustep-base1.22. Unpacking libgnustep-base1.22 (from .../libgnustep-base1.22_1.22.1-4.1_amd64.deb) ... Selecting previously unselected package gnustep-base-runtime. Unpacking gnustep-base-runtime (from .../gnustep-base-runtime_1.22.1-4.1_amd64.deb) ... Selecting previously unselected package libobjc-4.8-dev:amd64. Unpacking libobjc-4.8-dev:amd64 (from .../libobjc-4.8-dev_4.8.1-6_amd64.deb) ... Selecting previously unselected package gobjc-4.8. Unpacking gobjc-4.8 (from .../gobjc-4.8_4.8.1-6_amd64.deb) ... Selecting previously unselected package gobjc. Unpacking gobjc (from .../gobjc_4%3a4.8.1-2_amd64.deb) ... Selecting previously unselected package gnustep-make. Unpacking gnustep-make (from .../gnustep-make_2.6.2-2.1_all.deb) ... Selecting previously unselected package libgnustep-base-dev. Unpacking libgnustep-base-dev (from .../libgnustep-base-dev_1.22.1-4.1_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-8_all.deb) ... Selecting previously unselected package sbuild-build-depends-biococoa-dummy. Unpacking sbuild-build-depends-biococoa-dummy (from .../sbuild-build-depends-biococoa-dummy.deb) ... Setting up libpipeline1:amd64 (1.2.4-1) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.18.3-1) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.2-3) ... Setting up libp11-kit0:amd64 (0.18.4-1) ... Setting up libtasn1-3:amd64 (2.14-3) ... Setting up libgnutls26:amd64 (2.12.23-5) ... Setting up libmagic1:amd64 (1:5.14-2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-2) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.12-1) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libglib2.0-0:amd64 (2.36.3-3) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up libicu48:amd64 (4.8.1.1-12) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libxslt1.1:amd64 (1.1.26-14.1) ... Setting up sgml-base (1.26+nmu4) ... Setting up file (1:5.14-2) ... Setting up gettext-base (0.18.3-1) ... Setting up autotools-dev (20130515.1) ... Setting up cdbs (0.4.122) ... Setting up gettext (0.18.3-1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20130630) ... Setting up diffstat (1.55-3) ... Setting up gnustep-common (2.6.2-2.1) ... Setting up xml-core (0.13+nmu2) ... Setting up libobjc-4.8-dev:amd64 (4.8.1-6) ... Setting up gobjc-4.8 (4.8.1-6) ... Setting up gobjc (4:4.8.1-2) ... Setting up gnustep-make (2.6.2-2.1) ... Setting up quilt (0.60-8) ... Processing triggers for sgml-base ... Setting up gnustep-base-common (1.22.1-4.1) ... Setting up libgnustep-base1.22 (1.22.1-4.1) ... Setting up gnustep-base-runtime (1.22.1-4.1) ... All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libgnustep-base-dev (1.22.1-4.1) ... Setting up sbuild-build-depends-biococoa-dummy (0.invalid.0) ... Processing triggers for libc-bin ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.23.52.20130620-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc-4.6_4.6.4-4 gcc-4.7_4.7.3-6 gcc-4.8_4.8.1-6 libc6-dev_2.17-7 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-6 linux-libc-dev_3.10.1-1 Package versions: apt_0.9.9.1 autotools-dev_20130515.1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130620-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.122 clang-3.3_1:3.3-3 coreutils_8.20-3 cpp_4:4.8.1-2 cpp-4.6_4.6.4-4 cpp-4.7_4.7.3-6 cpp-4.8_4.8.1-6 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debian-archive-keyring_2012.4 debianutils_4.3.4 diffstat_1.55-3 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.19-2 file_1:5.14-2 findutils_4.4.2-6 g++_4:4.8.1-2 g++-4.6_4.6.4-4 g++-4.8_4.8.1-6 gcc_4:4.8.1-2 gcc-4.4-base_4.4.7-4 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-4 gcc-4.6-base_4.6.4-4 gcc-4.7_4.7.3-6 gcc-4.7-base_4.7.3-6 gcc-4.8_4.8.1-6 gcc-4.8-base_4.8.1-6 gettext_0.18.3-1 gettext-base_0.18.3-1 gnupg_1.4.12-7 gnustep-base-common_1.22.1-4.1 gnustep-base-runtime_1.22.1-4.1 gnustep-common_2.6.2-2.1 gnustep-make_2.6.2-2.1 gobjc_4:4.8.1-2 gobjc-4.8_4.8.1-6 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hostname_3.13 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.52-1 libapt-pkg4.12_0.9.9.1 libasan0_4.8.1-6 libasprintf0c2_0.18.3-1 libatomic1_4.8.1-6 libattr1_1:2.4.47-1 libavahi-client3_0.6.31-2 libavahi-common-data_0.6.31-2 libavahi-common3_0.6.31-2 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-4 libc-bin_2.17-7 libc-dev-bin_2.17-7 libc6_2.17-7 libc6-dev_2.17-7 libcap2_1:2.22-1.2 libclang-common-3.3-dev_1:3.3-3 libclang1-3.3_1:3.3-3 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.0-2 libcloog-ppl1_0.16.1-3 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libffi6_3.0.13-4 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.2d-5 libgcc-4.7-dev_4.7.3-6 libgcc-4.8-dev_4.8.1-6 libgcc1_1:4.8.1-6 libgcrypt11_1.5.2-3 libgdbm3_1.8.3-12 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-2 libgmpxx4ldbl_2:5.1.2+dfsg-2 libgnustep-base-dev_1.22.1-4.1 libgnustep-base1.22_1.22.1-4.1 libgnutls26_2.12.23-5 libgomp1_4.8.1-6 libgpg-error0_1.10-3.1 libgpm2_1.20.4-6.1 libicu48_4.8.1.1-12 libisl10_0.11.2-1 libitm1_4.8.1-6 libllvm3.3_1:3.3-3 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libobjc-4.7-dev_4.7.3-6 libobjc-4.8-dev_4.8.1-6 libobjc4_4.8.1-6 libp11-kit0_0.18.4-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libquadmath0_4.8.1-6 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libss2_1.42.8-1 libstdc++-4.8-dev_4.8.1-6 libstdc++6_4.8.1-6 libstdc++6-4.6-dev_4.6.4-4 libstdc++6-4.7-dev_4.7.3-6 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libtsan0_4.8.1-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-2 libxslt1.1_1.1.26-14.1 linux-libc-dev_3.10.1-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12 make_3.81-8.2 man-db_2.6.5-2 mawk_1.3.3-17 mount_2.20.1-5.5 multiarch-support_2.17-7 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 quilt_0.60-8 readline-common_6.2+dfsg-0.1 sbuild-build-depends-biococoa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sudo_1.8.5p2-1+nmu1 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-6 tzdata_2013c-2 ucf_3.0027+nmu1 util-linux_2.20.1-5.5 vim_2:7.3.923-3 vim-common_2:7.3.923-3 vim-runtime_2:7.3.923-3 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Nov 25 14:59:38 2010 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./biococoa_2.2.2-1.dsc dpkg-source: info: extracting biococoa in biococoa-2.2.2 dpkg-source: info: unpacking biococoa_2.2.2.orig.tar.gz dpkg-source: info: unpacking biococoa_2.2.2-1.debian.tar.gz dpkg-source: info: applying link-libs.patch Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 2.2.2-1clang1 User Environment ──────────────── HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-ce995581-4de5-4b5b-b243-3067be0c9238 SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package biococoa dpkg-buildpackage: source version 2.2.2-1clang1 dpkg-source --before-build biococoa-2.2.2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules rm -f debian/stamp-makefile-build debian/stamp-makefile-install GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,defs -Wl,--as-needed" OPTFLAG=-O2 -k clean This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/«PKGBUILDDIR»' rm -rf ./*~ ./obj Making clean in subprojects of framework BioCocoa... make[2]: Entering directory `/«PKGBUILDDIR»/BCFoundation' rm -rf ./*~ ./obj Making clean in subprojects of subproject BCFoundation... make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCTools' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCTools' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' rm -rf ./*~ ./obj make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' make[2]: Leaving directory `/«PKGBUILDDIR»/BCFoundation' Making clean for framework BioCocoa... rm -rf \ \ ./BioCocoa.framework ./derived_src make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean rm -f debian/libbiococoa2.install rm -f debian/libbiococoa-dev.install /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi Removing patch link-libs.patch Restoring GNUmakefile No patches applied rm -rf ./.pc rm -f debian/stamp-patch* debian/rules build-arch test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch link-libs.patch patching file GNUmakefile Hunk #1 succeeded at 39 (offset 6 lines). Now at patch link-libs.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/«PKGBUILDDIR»' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/«PKGBUILDDIR»' GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,defs -Wl,--as-needed" OPTFLAG=-O2 This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/«PKGBUILDDIR»' Making build-headers in subprojects of framework BioCocoa... make[2]: Entering directory `/«PKGBUILDDIR»/BCFoundation' Making build-headers in subprojects of subproject BCFoundation... make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /usr/bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /usr/bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /usr/bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' Making build-headers for subproject BCAnalysis... /usr/bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /usr/bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAnalysis' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' Making build-headers for subproject BCGeneExpression... /usr/bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /usr/bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /usr/bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /usr/bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneExpression' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' Making build-headers for subproject BCGeneticCode... /usr/bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /usr/bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /usr/bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /usr/bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCGeneticCode' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' Making build-headers for subproject BCProteinStructure... /usr/bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /usr/bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /usr/bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /usr/bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /usr/bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /usr/bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCProteinStructure' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' Making build-headers for subproject BCSequence... /usr/bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /usr/bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /usr/bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /usr/bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequence' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' Making build-headers for subproject BCSequenceIO... /usr/bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /usr/bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /usr/bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /usr/bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSequenceIO' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' Making build-headers for subproject BCSymbol... /usr/bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /usr/bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /usr/bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /usr/bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /usr/bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /usr/bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCSymbol' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCTools' Making build-headers for subproject BCTools... /usr/bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /usr/bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /usr/bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /usr/bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /usr/bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /usr/bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /usr/bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /usr/bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /usr/bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCTools' make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' Making build-headers for subproject BCUtils... /usr/bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /usr/bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /usr/bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCUtils' Making build-headers for subproject BCFoundation... /usr/bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /usr/bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /usr/bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /usr/bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h make[2]: Leaving directory `/«PKGBUILDDIR»/BCFoundation' Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of framework BioCocoa... make[2]: Entering directory `/«PKGBUILDDIR»/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of subproject BCFoundation... make[3]: Entering directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCPairwiseAlignment.m -c \ -MMD -MP -D_FORTIFY_SOURCE=2 -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o In file included from BCPairwiseAlignment.m:31: In file included from ./BCSequenceAlignment.h:36: In file included from /usr/include/GNUstep/Foundation/Foundation.h:30: In file included from /usr/include/GNUstep/GNUstepBase/GSVersionMacros.h:193: In file included from /usr/include/GNUstep/GNUstepBase/GSConfig.h:229: /usr/include/GNUstep/GNUstepBase/preface.h:112:11: fatal error: 'objc/objc.h' file not found #include ^ 1 error generated. make[5]: *** [obj/BCAlignment.obj/BCPairwiseAlignment.m.o] Error 1 make[4]: *** [internal-subproject-all_] Error 2 make[3]: *** [BCAlignment.all.subproject.variables] Error 2 make[3]: Leaving directory `/«PKGBUILDDIR»/BCFoundation/BCAlignment' make[2]: *** [BCFoundation.all.subproject.variables] Error 2 make[1]: *** [BioCocoa.all.framework.variables] Error 2 make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 make[2]: Leaving directory `/«PKGBUILDDIR»/BCFoundation' make[1]: Leaving directory `/«PKGBUILDDIR»' ──────────────────────────────────────────────────────────────────────────────── Build finished at 20130717-1218 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 2392 Build-Time: 9 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 13 Job: biococoa_2.2.2-1 Machine Architecture: amd64 Package: biococoa Package-Time: 100 Source-Version: 2.2.2-1 Space: 2392 Status: attempted Version: 2.2.2-1clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20130717-1218 Build needed 00:01:40, 2392k disc space DC-Status: Failed 100.542656753s