DC-Build-Header: librg-blast-parser-perl 0.03-1 / 2014-01-06 09:17:37 +0000 DC-Task: source:librg-blast-parser-perl version:0.03-1 architecture:any chroot:unstable esttime:38 logfile:/tmp/librg-blast-parser-perl_0.03-1_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " librg-blast-parser-perl_0.03-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-7-245.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librg-blast-parser-perl 0.03-1clang1 (amd64) 06 Jan 2014 09:17 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librg-blast-parser-perl Version: 0.03-1clang1 Source Version: 0.03-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-eTlDfA/librg-blast-parser-perl-0.03' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-eTlDfA' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-1cfd8d3e-9af8-4f45-ba95-7c4e19735e6c' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [206 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [11.3 kB] Get:6 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [11.3 kB] Get:7 http://localhost:9999 unstable/main amd64 2014-01-04-1439.27.pdiff [11.8 kB] Get:8 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [1898 B] Get:9 http://localhost:9999 unstable/main amd64 2014-01-04-1439.27.pdiff [11.8 kB] Get:10 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [12.3 kB] Get:11 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [1898 B] Get:12 http://localhost:9999 unstable/main amd64 2014-01-04-2039.41.pdiff [24.3 kB] Get:13 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [12.3 kB] Get:14 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [2358 B] Get:15 http://localhost:9999 unstable/main amd64 2014-01-04-2039.41.pdiff [24.3 kB] Get:16 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [9640 B] Get:17 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [2358 B] Get:18 http://localhost:9999 unstable/main amd64 2014-01-05-0239.35.pdiff [18.3 kB] Get:19 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [9640 B] Get:20 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [504 B] Get:21 http://localhost:9999 unstable/main amd64 2014-01-05-0239.35.pdiff [18.3 kB] Get:22 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [4885 B] Get:23 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [504 B] Get:24 http://localhost:9999 unstable/main amd64 2014-01-05-0840.32.pdiff [3950 B] Get:25 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [4885 B] Get:26 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [214 B] Get:27 http://localhost:9999 unstable/main amd64 2014-01-05-0840.32.pdiff [3950 B] Get:28 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [7183 B] Get:29 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [214 B] Get:30 http://localhost:9999 unstable/main amd64 2014-01-05-1438.24.pdiff [3882 B] Get:31 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [7183 B] Get:32 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [1111 B] Get:33 http://localhost:9999 unstable/main amd64 2014-01-05-1438.24.pdiff [3882 B] Get:34 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [20.2 kB] Get:35 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [1111 B] Get:36 http://localhost:9999 unstable/main amd64 2014-01-05-2041.02.pdiff [17.0 kB] Get:37 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [20.2 kB] Get:38 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [2166 B] Get:39 http://localhost:9999 unstable/main amd64 2014-01-05-2041.02.pdiff [17.0 kB] Get:40 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [7972 B] Get:41 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [2166 B] Get:42 http://localhost:9999 unstable/main amd64 2014-01-06-0239.34.pdiff [21.1 kB] Get:43 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [7972 B] Get:44 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [238 B] Get:45 http://localhost:9999 unstable/main amd64 2014-01-06-0239.34.pdiff [21.1 kB] Get:46 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [238 B] Fetched 412 kB in 28s (14.5 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: libterm-ui-perl 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libterm-ui-perl all 0.42-1 [19.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.1 kB in 0s (1144 kB/s) (Reading database ... 13944 files and directories currently installed.) Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) over (0.38-1) ... Setting up libterm-ui-perl (0.42-1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librg-blast-parser-perl/trunk/ Need to get 18.9 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main librg-blast-parser-perl 0.03-1 (dsc) [2221 B] Get:2 http://localhost:9999/debian/ unstable/main librg-blast-parser-perl 0.03-1 (tar) [11.6 kB] Get:3 http://localhost:9999/debian/ unstable/main librg-blast-parser-perl 0.03-1 (diff) [5026 B] Fetched 18.9 kB in 0s (21.0 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Install of clang-3.4' Install of clang-3.4 + apt-get update Hit http://localhost:9999 unstable InRelease Hit http://localhost:9999 unstable/main Sources/DiffIndex Hit http://localhost:9999 unstable/main amd64 Packages/DiffIndex Hit http://localhost:9999 unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.4 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-3.4-dev libclang1-3.4 libffi6 libllvm3.4 libobjc-4.8-dev libobjc4 Recommended packages: llvm-3.4-dev python The following NEW packages will be installed: clang-3.4 libclang-common-3.4-dev libclang1-3.4 libffi6 libllvm3.4 libobjc-4.8-dev libobjc4 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 82.1 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.0.13-10 [19.3 kB] Get:2 http://localhost:9999/debian/ unstable/main libllvm3.4 amd64 1:3.4-1 [6528 kB] Get:3 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.8.2-11 [110 kB] Get:4 http://localhost:9999/debian/ unstable/main libobjc-4.8-dev amd64 4.8.2-11 [370 kB] Get:5 http://localhost:9999/debian/ unstable/main libclang1-3.4 amd64 1:3.4-1 [3526 kB] Get:6 http://localhost:9999/debian/ unstable/main libclang-common-3.4-dev amd64 1:3.4-1 [516 kB] Get:7 http://localhost:9999/debian/ unstable/main clang-3.4 amd64 1:3.4-1 [8878 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (25.2 MB/s) Selecting previously unselected package libffi6:amd64. (Reading database ... 13944 files and directories currently installed.) Preparing to unpack .../libffi6_3.0.13-10_amd64.deb ... Unpacking libffi6:amd64 (3.0.13-10) ... Selecting previously unselected package libllvm3.4:amd64. Preparing to unpack .../libllvm3.4_1%3a3.4-1_amd64.deb ... Unpacking libllvm3.4:amd64 (1:3.4-1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.8.2-11_amd64.deb ... Unpacking libobjc4:amd64 (4.8.2-11) ... Selecting previously unselected package libobjc-4.8-dev:amd64. Preparing to unpack .../libobjc-4.8-dev_4.8.2-11_amd64.deb ... Unpacking libobjc-4.8-dev:amd64 (4.8.2-11) ... Selecting previously unselected package libclang1-3.4:amd64. Preparing to unpack .../libclang1-3.4_1%3a3.4-1_amd64.deb ... Unpacking libclang1-3.4:amd64 (1:3.4-1) ... Selecting previously unselected package libclang-common-3.4-dev. Preparing to unpack .../libclang-common-3.4-dev_1%3a3.4-1_amd64.deb ... Unpacking libclang-common-3.4-dev (1:3.4-1) ... Selecting previously unselected package clang-3.4. Preparing to unpack .../clang-3.4_1%3a3.4-1_amd64.deb ... Unpacking clang-3.4 (1:3.4-1) ... Setting up libffi6:amd64 (3.0.13-10) ... Setting up libllvm3.4:amd64 (1:3.4-1) ... Setting up libobjc4:amd64 (4.8.2-11) ... Setting up libobjc-4.8-dev:amd64 (4.8.2-11) ... Setting up libclang1-3.4:amd64 (1:3.4-1) ... Setting up libclang-common-3.4-dev (1:3.4-1) ... Setting up clang-3.4 (1:3.4-1) ... Processing triggers for libc-bin (2.17-97) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 + ln -s clang++ g++-4.8 + ln -s clang gcc-4.8 + ln -s clang cpp-4.8 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'gcc-4.8 hold' + dpkg --set-selections + echo 'cpp-4.8 hold' + dpkg --set-selections + echo 'g++-4.8 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-KglIpe/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/766 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14105 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.0-2), perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.0-2), perl dpkg-deb: building package `sbuild-build-depends-librg-blast-parser-perl-dummy' in `/«BUILDDIR»/resolver-GJmPFG/apt_archive/sbuild-build-depends-librg-blast-parser-perl-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librg-blast-parser-perl build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libextutils-xspp-perl libglib2.0-0 libmagic1 libpipeline1 librostlab-blast0 librostlab-blast0-dev librostlab3 librostlab3-dev libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff librostlab-blast-doc librostlab-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libextutils-xspp-perl libglib2.0-0 libmagic1 libpipeline1 librostlab-blast0 librostlab-blast0-dev librostlab3 librostlab3-dev libunistring0 libxml2 man-db po-debconf sbuild-build-depends-librg-blast-parser-perl-dummy 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 8388 kB/8389 kB of archives. After this operation, 28.3 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.2.6-1 [24.8 kB] Get:2 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-3 [747 kB] Get:3 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:4 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.5-3 [975 kB] Get:5 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.18.3.1-2 [29.1 kB] Get:6 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.14-2 [216 kB] Get:7 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-3 [791 kB] Get:8 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.36.4-1 [2055 kB] Get:9 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-2 [133 kB] Get:10 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:11 http://localhost:9999/debian/ unstable/main file amd64 1:5.14-2 [54.0 kB] Get:12 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.18.3.1-2 [116 kB] Get:13 http://localhost:9999/debian/ unstable/main gettext amd64 0.18.3.1-2 [1202 kB] Get:14 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:15 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:16 http://localhost:9999/debian/ unstable/main debhelper all 9.20131227 [687 kB] Get:17 http://localhost:9999/debian/ unstable/main libextutils-xspp-perl all 0.1800-1 [191 kB] Get:18 http://localhost:9999/debian/ unstable/main librostlab-blast0 amd64 1.0.1-2 [115 kB] Get:19 http://localhost:9999/debian/ unstable/main librostlab3 amd64 1.0.20-3 [5636 B] Get:20 http://localhost:9999/debian/ unstable/main librostlab3-dev amd64 1.0.20-3 [12.5 kB] Get:21 http://localhost:9999/debian/ unstable/main librostlab-blast0-dev amd64 1.0.1-2 [135 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8388 kB in 2s (2812 kB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 14105 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.2.6-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.2.6-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-3_amd64.deb ... Unpacking groff-base (1.22.2-3) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5_amd64.deb ... Unpacking bsdmainutils (9.0.5) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.5-3_amd64.deb ... Unpacking man-db (2.6.5-3) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.18.3.1-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.18.3.1-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.14-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.14-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.36.4-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.36.4-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-2_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-2) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.14-2_amd64.deb ... Unpacking file (1:5.14-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.1-2_amd64.deb ... Unpacking gettext-base (0.18.3.1-2) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.1-2_amd64.deb ... Unpacking gettext (0.18.3.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ... Unpacking po-debconf (1.0.16+nmu2) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131227_all.deb ... Unpacking debhelper (9.20131227) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../libextutils-xspp-perl_0.1800-1_all.deb ... Unpacking libextutils-xspp-perl (0.1800-1) ... Selecting previously unselected package librostlab-blast0. Preparing to unpack .../librostlab-blast0_1.0.1-2_amd64.deb ... Unpacking librostlab-blast0 (1.0.1-2) ... Selecting previously unselected package librostlab3. Preparing to unpack .../librostlab3_1.0.20-3_amd64.deb ... Unpacking librostlab3 (1.0.20-3) ... Selecting previously unselected package librostlab3-dev. Preparing to unpack .../librostlab3-dev_1.0.20-3_amd64.deb ... Unpacking librostlab3-dev (1.0.20-3) ... Selecting previously unselected package librostlab-blast0-dev. Preparing to unpack .../librostlab-blast0-dev_1.0.1-2_amd64.deb ... Unpacking librostlab-blast0-dev (1.0.1-2) ... Selecting previously unselected package sbuild-build-depends-librg-blast-parser-perl-dummy. Preparing to unpack .../sbuild-build-depends-librg-blast-parser-perl-dummy.deb ... Unpacking sbuild-build-depends-librg-blast-parser-perl-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.2.6-1) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.18.3.1-2) ... Setting up libmagic1:amd64 (1:5.14-2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3) ... Setting up libglib2.0-0:amd64 (2.36.4-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up file (1:5.14-2) ... Setting up gettext-base (0.18.3.1-2) ... Setting up gettext (0.18.3.1-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20131227) ... Setting up libextutils-xspp-perl (0.1800-1) ... Setting up librostlab-blast0 (1.0.1-2) ... Setting up librostlab3 (1.0.20-3) ... Setting up librostlab3-dev (1.0.20-3) ... Setting up librostlab-blast0-dev (1.0.1-2) ... Setting up sbuild-build-depends-librg-blast-parser-perl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.17-97) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5 g++-4.6_4.6.4-5 g++-4.8_4.8.2-11 gcc-4.6_4.6.4-5 gcc-4.7_4.7.3-9 gcc-4.8_4.8.2-11 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-11 libstdc++6_4.8.2-11 libstdc++6-4.6-dev_4.6.4-5 linux-libc-dev_3.12.6-2 Package versions: apt_0.9.14.2 base-files_7.2 base-passwd_3.5.29 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 clang-3.4_1:3.4-1 coreutils_8.21-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5 cpp-4.7_4.7.3-9 cpp-4.8_4.8.2-11 dash_0.5.7-3+nmu1 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.5 dpkg-dev_1.17.5 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2-7 g++_4:4.8.2-1 g++-4.6_4.6.4-5 g++-4.8_4.8.2-11 gcc_4:4.8.2-1 gcc-4.4-base_4.4.7-6 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-5 gcc-4.6-base_4.6.4-5 gcc-4.7_4.7.3-9 gcc-4.7-base_4.7.3-9 gcc-4.8_4.8.2-11 gcc-4.8-base_4.8.2-11 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gnupg_1.4.15-3 gpgv_1.4.15-3 grep_2.15-2 groff-base_1.22.2-3 gzip_1.6-3 hostname_3.15 initscripts_2.88dsf-45 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libasan0_4.8.2-11 libasprintf0c2_0.18.3.1-2 libatomic1_4.8.2-11 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcap2_1:2.22-1.2 libclang-common-3.4-dev_1:3.4-1 libclang1-3.4_1:3.4-1 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcloog-ppl1_0.16.1-4 libcomerr2_1.42.9-2 libcroco3_0.6.8-2 libdb5.1_5.1.29-7 libdpkg-perl_1.17.5 libextutils-xspp-perl_0.1800-1 libfakeroot_1.20-3 libffi6_3.0.13-10 libfile-fcntllock-perl_0.14-2+b1 libgc1c2_1:7.2d-6 libgcc-4.7-dev_4.7.3-9 libgcc-4.8-dev_4.8.2-11 libgcc1_1:4.8.2-11 libgdbm3_1.8.3-12 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgmpxx4ldbl_2:5.1.3+dfsg-1 libgomp1_4.8.2-11 libgpm2_1.20.4-6.1 libisl10_0.12.1-2 libitm1_4.8.2-11 libllvm3.4_1:3.4-1 liblocale-gettext-perl_1.05-7+b2 liblog-message-simple-perl_0.10-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_4.8-1 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libobjc-4.8-dev_4.8.2-11 libobjc4_4.8.2-11 libpam-modules_1.1.3-10 libpam-modules-bin_1.1.3-10 libpam-runtime_1.1.3-10 libpam0g_1.1.3-10 libpcre3_1:8.31-2 libpipeline1_1.2.6-1 libpod-latex-perl_0.61-1 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libquadmath0_4.8.2-11 libreadline6_6.2+dfsg-0.1 librostlab-blast0_1.0.1-2 librostlab-blast0-dev_1.0.1-2 librostlab3_1.0.20-3 librostlab3-dev_1.0.20-3 libselinux1_2.2.1-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libss2_1.42.9-2 libstdc++-4.8-dev_4.8.2-11 libstdc++6_4.8.2-11 libstdc++6-4.6-dev_4.6.4-5 libswitch-perl_2.16-2 libterm-ui-perl_0.42-1 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5+b1 libtext-soundex-perl_3.4-1+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-1 libtinfo5_5.9+20130608-1 libtsan0_4.8.2-11 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian12 make_3.81-8.3 man-db_2.6.5-3 mawk_1.3.3-17 mount_2.20.1-5.5 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.1-5 perl-base_5.18.1-5 perl-modules_5.18.1-5 po-debconf_1.0.16+nmu2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librg-blast-parser-perl-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sudo_1.8.8-2 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.27-4 tzdata_2013i-1 ucf_3.0027+nmu1 util-linux_2.20.1-5.5 vim_2:7.4.052-1 vim-common_2:7.4.052-1 vim-runtime_2:7.4.052-1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon Sep 24 08:29:43 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librg-blast-parser-perl_0.03-1.dsc dpkg-source: info: extracting librg-blast-parser-perl in librg-blast-parser-perl-0.03 dpkg-source: info: unpacking librg-blast-parser-perl_0.03.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.03-1.debian.tar.gz Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 0.03-1clang1 User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-1cfd8d3e-9af8-4f45-ba95-7c4e19735e6c SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package librg-blast-parser-perl dpkg-buildpackage: source version 0.03-1clang1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build librg-blast-parser-perl-0.03 dpkg-buildpackage: host architecture amd64 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file fakeroot debian/rules clean dh --parallel clean dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel debian/rules build-arch dh --parallel build-arch dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure -- OPTIMIZE="-D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security" LD="'cc' -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. 'CREATE_PACKLIST' is not a known MakeMaker parameter name. Writing Makefile for RG::Blast::Parser Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build -a -O--parallel make[1]: Entering directory `/«PKGBUILDDIR»' /usr/bin/perl /usr/share/perl/5.18/ExtUtils/xsubpp -C++ -hiertype -noprototypes -typemap /usr/share/perl/5.18/ExtUtils/typemap -typemap perlobject.map -typemap typemap Parser.xs > Parser.xsc && mv Parser.xsc Parser.c Running Mkbootstrap for RG::Blast::Parser () cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) chmod 644 Parser.bs cp Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs chmod 644 blib/arch/auto/RG/Blast/Parser/Parser.bs g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -DVERSION=\"0.03\" -DXS_VERSION=\"0.03\" -fPIC "-I/usr/lib/perl/5.18/CORE" Parser.c clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated In file included from Parser.xs:15: /usr/include/rostlab/blast-parser-driver.h:61:12: error: expected a class or namespace friend YY_DECL_FRIEND; ^~~~~~~~~~~~~~ /usr/include/rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ~~~~~~~~~~~~~~~~~~~~~~~~^ Parser.c:618:1: warning: duplicate 'extern' declaration specifier [-Wduplicate-decl-specifier] XS_EXTERNAL(boot_RG__Blast__Parser); /* prototype to pass -Wmissing-prototypes */ ^ /usr/lib/perl/5.18/CORE/XSUB.h:145:33: note: expanded from macro 'XS_EXTERNAL' # define XS_EXTERNAL(name) extern "C" XSPROTO(name) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ /usr/include/rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ /usr/include/rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ /usr/include/rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from Parser.xs:15: In file included from /usr/include/rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from /usr/include/rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ /usr/include/rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ /usr/include/rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 1 warning and 5 errors generated. make[1]: *** [Parser.o] Error 1 make[1]: Leaving directory `/«PKGBUILDDIR»' dh_auto_build: make -j10 returned exit code 2 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20140106-0918 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 236 Build-Time: 6 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 12 Job: librg-blast-parser-perl_0.03-1 Machine Architecture: amd64 Package: librg-blast-parser-perl Package-Time: 70 Source-Version: 0.03-1 Space: 236 Status: attempted Version: 0.03-1clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20140106-0918 Build needed 00:01:10, 236k disc space DC-Status: Failed 70.710184535s