DC-Build-Header: librostlab-blast 1.0.1-2 / 2014-01-06 07:00:18 +0000 DC-Task: source:librostlab-blast version:1.0.1-2 architecture:any chroot:unstable esttime:119 logfile:/tmp/librostlab-blast_1.0.1-2_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/switch-to-clang --append-to-version "clang1" --maintainer "Lucas Nussbaum " --uploader "Lucas Nussbaum " librostlab-blast_1.0.1-2' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-11-116.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ librostlab-blast 1.0.1-2clang1 (amd64) 06 Jan 2014 07:00 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: librostlab-blast Version: 1.0.1-2clang1 Source Version: 1.0.1-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/librostlab-blast-V6TCTM/librostlab-blast-1.0.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/librostlab-blast-V6TCTM' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-eef250ad-118b-4946-8bd3-856a27a2c05c' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [206 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [11.3 kB] Get:6 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [11.3 kB] Get:7 http://localhost:9999 unstable/main amd64 2014-01-04-1439.27.pdiff [11.8 kB] Get:8 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [1898 B] Get:9 http://localhost:9999 unstable/main amd64 2014-01-04-1439.27.pdiff [11.8 kB] Get:10 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [12.3 kB] Get:11 http://localhost:9999 unstable/main 2014-01-04-1439.27.pdiff [1898 B] Get:12 http://localhost:9999 unstable/main amd64 2014-01-04-2039.41.pdiff [24.3 kB] Get:13 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [12.3 kB] Get:14 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [2358 B] Get:15 http://localhost:9999 unstable/main amd64 2014-01-04-2039.41.pdiff [24.3 kB] Get:16 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [9640 B] Get:17 http://localhost:9999 unstable/main 2014-01-04-2039.41.pdiff [2358 B] Get:18 http://localhost:9999 unstable/main amd64 2014-01-05-0239.35.pdiff [18.3 kB] Get:19 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [9640 B] Get:20 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [504 B] Get:21 http://localhost:9999 unstable/main amd64 2014-01-05-0239.35.pdiff [18.3 kB] Get:22 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [4885 B] Get:23 http://localhost:9999 unstable/main 2014-01-05-0239.35.pdiff [504 B] Get:24 http://localhost:9999 unstable/main amd64 2014-01-05-0840.32.pdiff [3950 B] Get:25 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [4885 B] Get:26 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [214 B] Get:27 http://localhost:9999 unstable/main amd64 2014-01-05-0840.32.pdiff [3950 B] Get:28 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [7183 B] Get:29 http://localhost:9999 unstable/main 2014-01-05-0840.32.pdiff [214 B] Get:30 http://localhost:9999 unstable/main amd64 2014-01-05-1438.24.pdiff [3882 B] Get:31 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [7183 B] Get:32 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [1111 B] Get:33 http://localhost:9999 unstable/main amd64 2014-01-05-1438.24.pdiff [3882 B] Get:34 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [20.2 kB] Get:35 http://localhost:9999 unstable/main 2014-01-05-1438.24.pdiff [1111 B] Get:36 http://localhost:9999 unstable/main amd64 2014-01-05-2041.02.pdiff [17.0 kB] Get:37 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [20.2 kB] Get:38 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [2166 B] Get:39 http://localhost:9999 unstable/main amd64 2014-01-05-2041.02.pdiff [17.0 kB] Get:40 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [7972 B] Get:41 http://localhost:9999 unstable/main 2014-01-05-2041.02.pdiff [2166 B] Get:42 http://localhost:9999 unstable/main amd64 2014-01-06-0239.34.pdiff [21.1 kB] Get:43 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [7972 B] Get:44 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [238 B] Get:45 http://localhost:9999 unstable/main amd64 2014-01-06-0239.34.pdiff [21.1 kB] Get:46 http://localhost:9999 unstable/main 2014-01-06-0239.34.pdiff [238 B] Fetched 412 kB in 28s (14.6 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: libterm-ui-perl 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libterm-ui-perl all 0.42-1 [19.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.1 kB in 0s (1203 kB/s) (Reading database ... 13944 files and directories currently installed.) Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) over (0.38-1) ... Setting up libterm-ui-perl (0.42-1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'librostlab-blast' packaging is maintained in the 'Svn' version control system at: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/ Need to get 390 kB of source archives. Get:1 http://localhost:9999/debian/ unstable/main librostlab-blast 1.0.1-2 (dsc) [2380 B] Get:2 http://localhost:9999/debian/ unstable/main librostlab-blast 1.0.1-2 (tar) [384 kB] Get:3 http://localhost:9999/debian/ unstable/main librostlab-blast 1.0.1-2 (diff) [3691 B] Fetched 390 kB in 1s (257 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/switch-to-clang ──────────────────── + echo 'Entering customization script...' Entering customization script... + echo 'Install of clang-3.4' Install of clang-3.4 + apt-get update Hit http://localhost:9999 unstable InRelease Hit http://localhost:9999 unstable/main Sources/DiffIndex Hit http://localhost:9999 unstable/main amd64 Packages/DiffIndex Hit http://localhost:9999 unstable/main Translation-en/DiffIndex Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.4 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libclang-common-3.4-dev libclang1-3.4 libffi6 libllvm3.4 libobjc-4.8-dev libobjc4 Recommended packages: llvm-3.4-dev python The following NEW packages will be installed: clang-3.4 libclang-common-3.4-dev libclang1-3.4 libffi6 libllvm3.4 libobjc-4.8-dev libobjc4 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 82.1 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.0.13-10 [19.3 kB] Get:2 http://localhost:9999/debian/ unstable/main libllvm3.4 amd64 1:3.4-1 [6528 kB] Get:3 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.8.2-11 [110 kB] Get:4 http://localhost:9999/debian/ unstable/main libobjc-4.8-dev amd64 4.8.2-11 [370 kB] Get:5 http://localhost:9999/debian/ unstable/main libclang1-3.4 amd64 1:3.4-1 [3526 kB] Get:6 http://localhost:9999/debian/ unstable/main libclang-common-3.4-dev amd64 1:3.4-1 [516 kB] Get:7 http://localhost:9999/debian/ unstable/main clang-3.4 amd64 1:3.4-1 [8878 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (25.4 MB/s) Selecting previously unselected package libffi6:amd64. (Reading database ... 13944 files and directories currently installed.) Preparing to unpack .../libffi6_3.0.13-10_amd64.deb ... Unpacking libffi6:amd64 (3.0.13-10) ... Selecting previously unselected package libllvm3.4:amd64. Preparing to unpack .../libllvm3.4_1%3a3.4-1_amd64.deb ... Unpacking libllvm3.4:amd64 (1:3.4-1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.8.2-11_amd64.deb ... Unpacking libobjc4:amd64 (4.8.2-11) ... Selecting previously unselected package libobjc-4.8-dev:amd64. Preparing to unpack .../libobjc-4.8-dev_4.8.2-11_amd64.deb ... Unpacking libobjc-4.8-dev:amd64 (4.8.2-11) ... Selecting previously unselected package libclang1-3.4:amd64. Preparing to unpack .../libclang1-3.4_1%3a3.4-1_amd64.deb ... Unpacking libclang1-3.4:amd64 (1:3.4-1) ... Selecting previously unselected package libclang-common-3.4-dev. Preparing to unpack .../libclang-common-3.4-dev_1%3a3.4-1_amd64.deb ... Unpacking libclang-common-3.4-dev (1:3.4-1) ... Selecting previously unselected package clang-3.4. Preparing to unpack .../clang-3.4_1%3a3.4-1_amd64.deb ... Unpacking clang-3.4 (1:3.4-1) ... Setting up libffi6:amd64 (3.0.13-10) ... Setting up libllvm3.4:amd64 (1:3.4-1) ... Setting up libobjc4:amd64 (4.8.2-11) ... Setting up libobjc-4.8-dev:amd64 (4.8.2-11) ... Setting up libclang1-3.4:amd64 (1:3.4-1) ... Setting up libclang-common-3.4-dev (1:3.4-1) ... Setting up clang-3.4 (1:3.4-1) ... Processing triggers for libc-bin (2.17-97) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 + ln -s clang++ g++-4.6 + ln -s clang gcc-4.6 + ln -s clang cpp-4.6 + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 + ln -s clang++ g++-4.7 + ln -s clang gcc-4.7 + ln -s clang cpp-4.7 + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 + ln -s clang++ g++-4.8 + ln -s clang gcc-4.8 + ln -s clang cpp-4.8 + cd - /«BUILDDIR» + echo 'Block the installation of new gcc version' Block the installation of new gcc version + dpkg --set-selections + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'cpp-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'cpp-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + echo 'gcc-4.8 hold' + dpkg --set-selections + echo 'cpp-4.8 hold' + dpkg --set-selections + echo 'g++-4.8 hold' + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + grep clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version I: Finished running '/tmp/switch-to-clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Ixrnt4/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/764 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14105 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package `sbuild-build-depends-librostlab-blast-dummy' in `/«BUILDDIR»/resolver-Iqxnpp/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install librostlab-blast build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bison bsdmainutils debhelper doxygen file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian latex-xcolor libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt4 libcgraph5 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdbus-1-3 libdrm2 libegl1-mesa libexpat1 libfontconfig1 libfreetype6 libgbm1 libgcrypt11 libgd3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls26 libgpg-error0 libgraph4 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgvc5 libgvpr1 libharfbuzz0b libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms1 liblcms2-2 libllvm3.3 libltdl7 libmagic1 libopenjpeg2 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng12-0 libpoppler19 libptexenc1 librostlab3 librostlab3-dev libsigsegv2 libsm6 libtasn1-3 libthai-data libthai0 libtiff5 libudev1 libunistring0 libvpx1 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxf86vm1 luatex m4 man-db po-debconf poppler-data preview-latex-style tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures x11-common xdg-utils Suggested packages: bison-doc wamerican wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc gsfonts graphviz-doc groff cups-common rng-tools libgd-tools krb5-doc krb5-user libjasper-runtime liblcms-utils liblcms2-utils ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp librostlab-doc less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core perl-tk gv postscript-viewer xpdf-reader pdf-viewer python-pygments libfile-which-perl libtcltk-ruby dot2tex gvfs-bin Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev ttf-liberation dbus libegl1-mesa-drivers libgl1-mesa-dri libglib2.0-data shared-mime-info fonts-droid krb5-locales xml-core texlive-luatex libmail-sendmail-perl lmodern python ruby wish tex-gyre tipa texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc latex-beamer prosper texlive-pictures-doc pgf libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autotools-dev bison bsdmainutils debhelper doxygen file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian latex-xcolor libasprintf0c2 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt4 libcgraph5 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdbus-1-3 libdrm2 libegl1-mesa libexpat1 libfontconfig1 libfreetype6 libgbm1 libgcrypt11 libgd3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls26 libgpg-error0 libgraph4 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgvc5 libgvpr1 libharfbuzz0b libice6 libicu52 libidn11 libijs-0.35 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms1 liblcms2-2 libllvm3.3 libltdl7 libmagic1 libopenjpeg2 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng12-0 libpoppler19 libptexenc1 librostlab3 librostlab3-dev libsigsegv2 libsm6 libtasn1-3 libthai-data libthai0 libtiff5 libudev1 libunistring0 libvpx1 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxf86vm1 luatex m4 man-db po-debconf poppler-data preview-latex-style sbuild-build-depends-librostlab-blast-dummy tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures x11-common xdg-utils 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 95.6 MB/95.6 MB of archives. After this operation, 321 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.2.6-1 [24.8 kB] Get:2 http://localhost:9999/debian/ unstable/main libudev1 amd64 204-6 [43.0 kB] Get:3 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.2-3 [747 kB] Get:4 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.5 [211 kB] Get:5 http://localhost:9999/debian/ unstable/main man-db amd64 2.6.5-3 [975 kB] Get:6 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.18.3.1-2 [29.1 kB] Get:7 http://localhost:9999/debian/ unstable/main libgpg-error0 amd64 1.12-0.2 [56.5 kB] Get:8 http://localhost:9999/debian/ unstable/main libgcrypt11 amd64 1.5.3-3 [249 kB] Get:9 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.1-3 [148 kB] Get:10 http://localhost:9999/debian/ unstable/main libtasn1-3 amd64 2.14-3 [68.5 kB] Get:11 http://localhost:9999/debian/ unstable/main libgnutls26 amd64 2.12.23-8 [529 kB] Get:12 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.6-1 [8758 B] Get:13 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.11.3+dfsg-3+nmu1 [54.7 kB] Get:14 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.11.3+dfsg-3+nmu1 [112 kB] Get:15 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.11.3+dfsg-3+nmu1 [292 kB] Get:16 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.11.3+dfsg-3+nmu1 [141 kB] Get:17 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.28-1 [183 kB] Get:18 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.14-2 [216 kB] Get:19 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.1+dfsg1-3 [791 kB] Get:20 http://localhost:9999/debian/ unstable/main libsigsegv2 amd64 2.10-2 [29.8 kB] Get:21 http://localhost:9999/debian/ unstable/main m4 amd64 1.4.17-2 [255 kB] Get:22 http://localhost:9999/debian/ unstable/main flex amd64 2.5.35-10.1 [332 kB] Get:23 http://localhost:9999/debian/ unstable/main libavahi-common-data amd64 0.6.31-4 [98.3 kB] Get:24 http://localhost:9999/debian/ unstable/main libavahi-common3 amd64 0.6.31-4 [50.6 kB] Get:25 http://localhost:9999/debian/ unstable/main libdbus-1-3 amd64 1.6.18-2 [153 kB] Get:26 http://localhost:9999/debian/ unstable/main libavahi-client3 amd64 0.6.31-4 [53.8 kB] Get:27 http://localhost:9999/debian/ unstable/main libdrm2 amd64 2.4.50-1 [475 kB] Get:28 http://localhost:9999/debian/ unstable/main libglapi-mesa amd64 9.2.2-1 [49.5 kB] Get:29 http://localhost:9999/debian/ unstable/main libllvm3.3 amd64 1:3.3-16 [6096 kB] Get:30 http://localhost:9999/debian/ unstable/main libwayland-client0 amd64 1.3.0-1 [21.2 kB] Get:31 http://localhost:9999/debian/ unstable/main libwayland-server0 amd64 1.3.0-1 [26.1 kB] Get:32 http://localhost:9999/debian/ unstable/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:33 http://localhost:9999/debian/ unstable/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:34 http://localhost:9999/debian/ unstable/main libxcb1 amd64 1.10-2 [41.8 kB] Get:35 http://localhost:9999/debian/ unstable/main libxcb-dri2-0 amd64 1.10-2 [12.1 kB] Get:36 http://localhost:9999/debian/ unstable/main libgbm1 amd64 9.2.2-1 [507 kB] Get:37 http://localhost:9999/debian/ unstable/main libx11-data all 2:1.6.2-1 [125 kB] Get:38 http://localhost:9999/debian/ unstable/main libx11-6 amd64 2:1.6.2-1 [716 kB] Get:39 http://localhost:9999/debian/ unstable/main libx11-xcb1 amd64 2:1.6.2-1 [162 kB] Get:40 http://localhost:9999/debian/ unstable/main libxcb-render0 amd64 1.10-2 [16.5 kB] Get:41 http://localhost:9999/debian/ unstable/main libxcb-shape0 amd64 1.10-2 [11.0 kB] Get:42 http://localhost:9999/debian/ unstable/main libxcb-xfixes0 amd64 1.10-2 [13.9 kB] Get:43 http://localhost:9999/debian/ unstable/main libegl1-mesa amd64 9.2.2-1 [83.9 kB] Get:44 http://localhost:9999/debian/ unstable/main libexpat1 amd64 2.1.0-4 [138 kB] Get:45 http://localhost:9999/debian/ unstable/main libpng12-0 amd64 1.2.49-5 [189 kB] Get:46 http://localhost:9999/debian/ unstable/main libfreetype6 amd64 2.5.2-1 [454 kB] Get:47 http://localhost:9999/debian/ unstable/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB] Get:48 http://localhost:9999/debian/ unstable/main fontconfig-config all 2.11.0-2 [270 kB] Get:49 http://localhost:9999/debian/ unstable/main libfontconfig1 amd64 2.11.0-2 [326 kB] Get:50 http://localhost:9999/debian/ unstable/main libxcb-glx0 amd64 1.10-2 [25.3 kB] Get:51 http://localhost:9999/debian/ unstable/main libxfixes3 amd64 1:5.0.1-1 [22.5 kB] Get:52 http://localhost:9999/debian/ unstable/main libxdamage1 amd64 1:1.1.4-1 [15.1 kB] Get:53 http://localhost:9999/debian/ unstable/main libxext6 amd64 2:1.3.2-1 [56.5 kB] Get:54 http://localhost:9999/debian/ unstable/main libxxf86vm1 amd64 1:1.1.3-1 [19.1 kB] Get:55 http://localhost:9999/debian/ unstable/main libgl1-mesa-glx amd64 9.2.2-1 [134 kB] Get:56 http://localhost:9999/debian/ unstable/main libpixman-1-0 amd64 0.32.4-1 [496 kB] Get:57 http://localhost:9999/debian/ unstable/main libxcb-shm0 amd64 1.10-2 [10.8 kB] Get:58 http://localhost:9999/debian/ unstable/main libxrender1 amd64 1:0.9.8-1 [33.5 kB] Get:59 http://localhost:9999/debian/ unstable/main libcairo2 amd64 1.12.16-2 [987 kB] Get:60 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.36.4-1 [2055 kB] Get:61 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-2 [133 kB] Get:62 http://localhost:9999/debian/ unstable/main libcups2 amd64 1.7.0-2 [269 kB] Get:63 http://localhost:9999/debian/ unstable/main libcupsimage2 amd64 1.7.0-2 [107 kB] Get:64 http://localhost:9999/debian/ unstable/main libjpeg8 amd64 8d-2 [120 kB] Get:65 http://localhost:9999/debian/ unstable/main libjbig0 amd64 2.0-2 [32.2 kB] Get:66 http://localhost:9999/debian/ unstable/main libtiff5 amd64 4.0.3-7 [208 kB] Get:67 http://localhost:9999/debian/ unstable/main libcupsfilters1 amd64 1.0.43-1 [88.1 kB] Get:68 http://localhost:9999/debian/ unstable/main libdatrie1 amd64 0.2.7.1-1 [31.4 kB] Get:69 http://localhost:9999/debian/ unstable/main libvpx1 amd64 1.3.0-1 [565 kB] Get:70 http://localhost:9999/debian/ unstable/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:71 http://localhost:9999/debian/ unstable/main libgd3 amd64 2.1.0-3+b1 [144 kB] Get:72 http://localhost:9999/debian/ unstable/main libgraphite2-3 amd64 1.2.4-1 [57.2 kB] Get:73 http://localhost:9999/debian/ unstable/main libharfbuzz0b amd64 0.9.25-1+b1 [442 kB] Get:74 http://localhost:9999/debian/ unstable/main x11-common all 1:7.7+5 [282 kB] Get:75 http://localhost:9999/debian/ unstable/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:76 http://localhost:9999/debian/ unstable/main libicu52 amd64 52.1-3 [6751 kB] Get:77 http://localhost:9999/debian/ unstable/main libjasper1 amd64 1.900.1-14 [160 kB] Get:78 http://localhost:9999/debian/ unstable/main liblcms1 amd64 1.19.dfsg-1.2+b1 [95.8 kB] Get:79 http://localhost:9999/debian/ unstable/main liblcms2-2 amd64 2.2+git20110628-2.3+b1 [121 kB] Get:80 http://localhost:9999/debian/ unstable/main libltdl7 amd64 2.4.2-1.6 [352 kB] Get:81 http://localhost:9999/debian/ unstable/main libopenjpeg2 amd64 1.3+dfsg-4.7+b1 [77.6 kB] Get:82 http://localhost:9999/debian/ unstable/main libthai-data all 0.1.20-1 [157 kB] Get:83 http://localhost:9999/debian/ unstable/main libthai0 amd64 0.1.20-1 [43.9 kB] Get:84 http://localhost:9999/debian/ unstable/main fontconfig amd64 2.11.0-2 [402 kB] Get:85 http://localhost:9999/debian/ unstable/main libpango-1.0-0 amd64 1.36.0-1+b1 [273 kB] Get:86 http://localhost:9999/debian/ unstable/main libpangoft2-1.0-0 amd64 1.36.0-1+b1 [198 kB] Get:87 http://localhost:9999/debian/ unstable/main libpangocairo-1.0-0 amd64 1.36.0-1+b1 [185 kB] Get:88 http://localhost:9999/debian/ unstable/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:89 http://localhost:9999/debian/ unstable/main libpoppler19 amd64 0.18.4-10 [921 kB] Get:90 http://localhost:9999/debian/ unstable/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:91 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB] Get:92 http://localhost:9999/debian/ unstable/main libxt6 amd64 1:1.1.4-1 [180 kB] Get:93 http://localhost:9999/debian/ unstable/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:94 http://localhost:9999/debian/ unstable/main libxaw7 amd64 2:1.0.11-1 [228 kB] Get:95 http://localhost:9999/debian/ unstable/main poppler-data all 0.4.6-4 [1481 kB] Get:96 http://localhost:9999/debian/ unstable/main file amd64 1:5.14-2 [54.0 kB] Get:97 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.18.3.1-2 [116 kB] Get:98 http://localhost:9999/debian/ unstable/main autotools-dev all 20130810.1 [69.6 kB] Get:99 http://localhost:9999/debian/ unstable/main libbison-dev amd64 2:3.0.2.dfsg-2 [426 kB] Get:100 http://localhost:9999/debian/ unstable/main bison amd64 2:3.0.2.dfsg-2 [765 kB] Get:101 http://localhost:9999/debian/ unstable/main gettext amd64 0.18.3.1-2 [1202 kB] Get:102 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:103 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB] Get:104 http://localhost:9999/debian/ unstable/main debhelper all 9.20131227 [687 kB] Get:105 http://localhost:9999/debian/ unstable/main doxygen amd64 1.8.6-1 [2454 kB] Get:106 http://localhost:9999/debian/ unstable/main libcdt4 amd64 2.26.3-16 [57.4 kB] Get:107 http://localhost:9999/debian/ unstable/main libcgraph5 amd64 2.26.3-16 [79.2 kB] Get:108 http://localhost:9999/debian/ unstable/main libgraph4 amd64 2.26.3-16 [68.2 kB] Get:109 http://localhost:9999/debian/ unstable/main libpathplan4 amd64 2.26.3-16 [61.6 kB] Get:110 http://localhost:9999/debian/ unstable/main libxdot4 amd64 2.26.3-16 [52.1 kB] Get:111 http://localhost:9999/debian/ unstable/main libgvc5 amd64 2.26.3-16 [434 kB] Get:112 http://localhost:9999/debian/ unstable/main libgvpr1 amd64 2.26.3-16 [204 kB] Get:113 http://localhost:9999/debian/ unstable/main graphviz amd64 2.26.3-16 [308 kB] Get:114 http://localhost:9999/debian/ unstable/main tex-common all 4.04 [639 kB] Get:115 http://localhost:9999/debian/ unstable/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:116 http://localhost:9999/debian/ unstable/main libijs-0.35 amd64 0.35-8 [20.4 kB] Get:117 http://localhost:9999/debian/ unstable/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:118 http://localhost:9999/debian/ unstable/main libgs9-common all 9.05~dfsg-8 [1981 kB] Get:119 http://localhost:9999/debian/ unstable/main libgs9 amd64 9.05~dfsg-8+b1 [1846 kB] Get:120 http://localhost:9999/debian/ unstable/main libkpathsea6 amd64 2013.20130729.30972-2+b1 [159 kB] Get:121 http://localhost:9999/debian/ unstable/main libptexenc1 amd64 2013.20130729.30972-2+b1 [52.3 kB] Get:122 http://localhost:9999/debian/ unstable/main texlive-binaries amd64 2013.20130729.30972-2+b1 [3997 kB] Get:123 http://localhost:9999/debian/ unstable/main luatex amd64 0.76.0-3 [3720 kB] Get:124 http://localhost:9999/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB] Get:125 http://localhost:9999/debian/ unstable/main texlive-base all 2013.20131219-1 [16.1 MB] Get:126 http://localhost:9999/debian/ unstable/main texlive-latex-base all 2013.20131219-1 [855 kB] Get:127 http://localhost:9999/debian/ unstable/main texlive-latex-recommended all 2013.20131219-1 [7106 kB] Get:128 http://localhost:9999/debian/ unstable/main latex-xcolor all 2.11-1.1 [610 kB] Get:129 http://localhost:9999/debian/ unstable/main librostlab3 amd64 1.0.20-3 [5636 B] Get:130 http://localhost:9999/debian/ unstable/main librostlab3-dev amd64 1.0.20-3 [12.5 kB] Get:131 http://localhost:9999/debian/ unstable/main preview-latex-style all 11.87-1 [317 kB] Get:132 http://localhost:9999/debian/ unstable/main texlive-fonts-recommended all 2013.20131219-1 [5427 kB] Get:133 http://localhost:9999/debian/ unstable/main texlive-pictures all 2013.20131219-1 [2429 kB] Get:134 http://localhost:9999/debian/ unstable/main texlive-latex-extra all 2013.20131219-1 [7569 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.6 MB in 7s (12.2 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 14105 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.2.6-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.2.6-1) ... Selecting previously unselected package libudev1:amd64. Preparing to unpack .../libudev1_204-6_amd64.deb ... Unpacking libudev1:amd64 (204-6) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-3_amd64.deb ... Unpacking groff-base (1.22.2-3) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5_amd64.deb ... Unpacking bsdmainutils (9.0.5) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.5-3_amd64.deb ... Unpacking man-db (2.6.5-3) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.18.3.1-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.18.3.1-2) ... Selecting previously unselected package libgpg-error0:amd64. 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Preparing to unpack .../libkrb5support0_1.11.3+dfsg-3+nmu1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.11.3+dfsg-3+nmu1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.11.3+dfsg-3+nmu1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.11.3+dfsg-3+nmu1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.11.3+dfsg-3+nmu1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.11.3+dfsg-3+nmu1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.11.3+dfsg-3+nmu1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.11.3+dfsg-3+nmu1) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.28-1_amd64.deb ... Unpacking libidn11:amd64 (1.28-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.14-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.14-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-2) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-2_amd64.deb ... Unpacking m4 (1.4.17-2) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.5.35-10.1_amd64.deb ... Unpacking flex (2.5.35-10.1) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.31-4_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.31-4) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.31-4_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.31-4) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.6.18-2_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.6.18-2) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.31-4_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.31-4) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.50-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.50-1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../libglapi-mesa_9.2.2-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (9.2.2-1) ... Selecting previously unselected package libllvm3.3:amd64. Preparing to unpack .../libllvm3.3_1%3a3.3-16_amd64.deb ... Unpacking libllvm3.3:amd64 (1:3.3-16) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../libwayland-client0_1.3.0-1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.3.0-1) ... Selecting previously unselected package libwayland-server0:amd64. Preparing to unpack .../libwayland-server0_1.3.0-1_amd64.deb ... Unpacking libwayland-server0:amd64 (1.3.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-2_amd64.deb ... Unpacking libxcb1:amd64 (1.10-2) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../libxcb-dri2-0_1.10-2_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.10-2) ... Selecting previously unselected package libgbm1:amd64. Preparing to unpack .../libgbm1_9.2.2-1_amd64.deb ... Unpacking libgbm1:amd64 (9.2.2-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-1_all.deb ... Unpacking libx11-data (2:1.6.2-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../libx11-xcb1_2%3a1.6.2-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.2-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.10-2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.10-2) ... Selecting previously unselected package libxcb-shape0:amd64. Preparing to unpack .../libxcb-shape0_1.10-2_amd64.deb ... Unpacking libxcb-shape0:amd64 (1.10-2) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../libxcb-xfixes0_1.10-2_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.10-2) ... Selecting previously unselected package libegl1-mesa:amd64. 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Setting up libgl1-mesa-glx:amd64 (9.2.2-1) ... Setting up libpixman-1-0:amd64 (0.32.4-1) ... Setting up libxcb-shm0:amd64 (1.10-2) ... Setting up libxrender1:amd64 (1:0.9.8-1) ... Setting up libcairo2:amd64 (1.12.16-2) ... Setting up libglib2.0-0:amd64 (2.36.4-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up libcups2:amd64 (1.7.0-2) ... Setting up libjpeg8:amd64 (8d-2) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff5:amd64 (4.0.3-7) ... Setting up libdatrie1:amd64 (0.2.7.1-1) ... Setting up libvpx1:amd64 (1.3.0-1) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd3:amd64 (2.1.0-3+b1) ... Setting up libgraphite2-3:amd64 (1.2.4-1) ... Setting up libharfbuzz0b:amd64 (0.9.25-1+b1) ... Setting up x11-common (1:7.7+5) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libicu52:amd64 (52.1-3) ... Setting up libjasper1:amd64 (1.900.1-14) ... Setting up liblcms1:amd64 (1.19.dfsg-1.2+b1) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.3+b1) ... Setting up libltdl7:amd64 (2.4.2-1.6) ... Setting up libopenjpeg2:amd64 (1.3+dfsg-4.7+b1) ... Setting up libthai-data (0.1.20-1) ... Setting up libthai0:amd64 (0.1.20-1) ... Setting up fontconfig (2.11.0-2) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:amd64 (1.36.0-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.36.0-1+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.36.0-1+b1) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpoppler19:amd64 (0.18.4-10) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libxt6:amd64 (1:1.1.4-1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxaw7:amd64 (2:1.0.11-1) ... Setting up poppler-data (0.4.6-4) ... Setting up file (1:5.14-2) ... Setting up gettext-base (0.18.3.1-2) ... Setting up autotools-dev (20130810.1) ... Setting up libbison-dev:amd64 (2:3.0.2.dfsg-2) ... Setting up bison (2:3.0.2.dfsg-2) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up gettext (0.18.3.1-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20131227) ... Setting up doxygen (1.8.6-1) ... Setting up libcdt4 (2.26.3-16) ... Setting up libcgraph5 (2.26.3-16) ... Setting up libgraph4 (2.26.3-16) ... Setting up libpathplan4 (2.26.3-16) ... Setting up libxdot4 (2.26.3-16) ... Setting up libgvc5 (2.26.3-16) ... Setting up libgvpr1 (2.26.3-16) ... Setting up graphviz (2.26.3-16) ... Setting up tex-common (4.04) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-8) ... Setting up libkpathsea6 (2013.20130729.30972-2+b1) ... Setting up libptexenc1 (2013.20130729.30972-2+b1) ... Setting up luatex (0.76.0-3) ... texlive-base is not ready, cannot create formats Setting up xdg-utils (1.1.0~rc1+git20111210-7) ... Setting up librostlab3 (1.0.20-3) ... Setting up librostlab3-dev (1.0.20-3) ... Setting up preview-latex-style (11.87-1) ... Setting up libcupsimage2:amd64 (1.7.0-2) ... Setting up libcupsfilters1:amd64 (1.0.43-1) ... Setting up libgs9 (9.05~dfsg-8+b1) ... Setting up texlive-binaries (2013.20130729.30972-2+b1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2013.20131219-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common (4.04) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-fonts-recommended (2013.20131219-1) ... Setting up texlive-pictures (2013.20131219-1) ... Setting up texlive-latex-base (2013.20131219-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (4.04) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2013.20131219-1) ... Processing triggers for tex-common (4.04) ... Running mktexlsr. This may take some time... done. Setting up latex-xcolor (2.11-1.1) ... Setting up texlive-latex-extra (2013.20131219-1) ... Processing triggers for tex-common (4.04) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.17-97) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 2.6.32-5-xen-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5 g++-4.6_4.6.4-5 g++-4.8_4.8.2-11 gcc-4.6_4.6.4-5 gcc-4.7_4.7.3-9 gcc-4.8_4.8.2-11 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-11 libstdc++6_4.8.2-11 libstdc++6-4.6-dev_4.6.4-5 linux-libc-dev_3.12.6-2 Package versions: apt_0.9.14.2 autotools-dev_20130810.1 base-files_7.2 base-passwd_3.5.29 bash_4.2+dfsg-1 binutils_2.24-2 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 clang-3.4_1:3.4-1 coreutils_8.21-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5 cpp-4.7_4.7.3-9 cpp-4.8_4.8.2-11 dash_0.5.7-3+nmu1 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffutils_1:3.3-1 doxygen_1.8.6-1 dpkg_1.17.5 dpkg-dev_1.17.5 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2-7 flex_2.5.35-10.1 fontconfig_2.11.0-2 fontconfig-config_2.11.0-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.8.2-1 g++-4.6_4.6.4-5 g++-4.8_4.8.2-11 gcc_4:4.8.2-1 gcc-4.4-base_4.4.7-6 gcc-4.5-base_4.5.4-1 gcc-4.6_4.6.4-5 gcc-4.6-base_4.6.4-5 gcc-4.7_4.7.3-9 gcc-4.7-base_4.7.3-9 gcc-4.8_4.8.2-11 gcc-4.8-base_4.8.2-11 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gnupg_1.4.15-3 gpgv_1.4.15-3 graphviz_2.26.3-16 grep_2.15-2 groff-base_1.22.2-3 gzip_1.6-3 hostname_3.15 initscripts_2.88dsf-45 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 latex-xcolor_2.11-1.1 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libasan0_4.8.2-11 libasprintf0c2_0.18.3.1-2 libatomic1_4.8.2-11 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libavahi-client3_0.6.31-4 libavahi-common-data_0.6.31-4 libavahi-common3_0.6.31-4 libbison-dev_2:3.0.2.dfsg-2 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcairo2_1.12.16-2 libcap2_1:2.22-1.2 libcdt4_2.26.3-16 libcgraph5_2.26.3-16 libclang-common-3.4-dev_1:3.4-1 libclang1-3.4_1:3.4-1 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcloog-ppl1_0.16.1-4 libcomerr2_1.42.9-2 libcroco3_0.6.8-2 libcups2_1.7.0-2 libcupsfilters1_1.0.43-1 libcupsimage2_1.7.0-2 libdatrie1_0.2.7.1-1 libdb5.1_5.1.29-7 libdbus-1-3_1.6.18-2 libdpkg-perl_1.17.5 libdrm2_2.4.50-1 libegl1-mesa_9.2.2-1 libexpat1_2.1.0-4 libfakeroot_1.20-3 libffi6_3.0.13-10 libfile-fcntllock-perl_0.14-2+b1 libfontconfig1_2.11.0-2 libfreetype6_2.5.2-1 libgbm1_9.2.2-1 libgc1c2_1:7.2d-6 libgcc-4.7-dev_4.7.3-9 libgcc-4.8-dev_4.8.2-11 libgcc1_1:4.8.2-11 libgcrypt11_1.5.3-3 libgd3_2.1.0-3+b1 libgdbm3_1.8.3-12 libgl1-mesa-glx_9.2.2-1 libglapi-mesa_9.2.2-1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgmpxx4ldbl_2:5.1.3+dfsg-1 libgnutls26_2.12.23-8 libgomp1_4.8.2-11 libgpg-error0_1.12-0.2 libgpm2_1.20.4-6.1 libgraph4_2.26.3-16 libgraphite2-3_1.2.4-1 libgs9_9.05~dfsg-8+b1 libgs9-common_9.05~dfsg-8 libgssapi-krb5-2_1.11.3+dfsg-3+nmu1 libgvc5_2.26.3-16 libgvpr1_2.26.3-16 libharfbuzz0b_0.9.25-1+b1 libice6_2:1.0.8-2 libicu52_52.1-3 libidn11_1.28-1 libijs-0.35_0.35-8 libisl10_0.12.1-2 libitm1_4.8.2-11 libjasper1_1.900.1-14 libjbig0_2.0-2 libjbig2dec0_0.11+20120125-1 libjpeg8_8d-2 libk5crypto3_1.11.3+dfsg-3+nmu1 libkeyutils1_1.5.6-1 libkpathsea6_2013.20130729.30972-2+b1 libkrb5-3_1.11.3+dfsg-3+nmu1 libkrb5support0_1.11.3+dfsg-3+nmu1 liblcms1_1.19.dfsg-1.2+b1 liblcms2-2_2.2+git20110628-2.3+b1 libllvm3.3_1:3.3-16 libllvm3.4_1:3.4-1 liblocale-gettext-perl_1.05-7+b2 liblog-message-simple-perl_0.10-1 libltdl7_2.4.2-1.6 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_4.8-1 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libobjc-4.8-dev_4.8.2-11 libobjc4_4.8.2-11 libopenjpeg2_1.3+dfsg-4.7+b1 libp11-kit0_0.20.1-3 libpam-modules_1.1.3-10 libpam-modules-bin_1.1.3-10 libpam-runtime_1.1.3-10 libpam0g_1.1.3-10 libpango-1.0-0_1.36.0-1+b1 libpangocairo-1.0-0_1.36.0-1+b1 libpangoft2-1.0-0_1.36.0-1+b1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpathplan4_2.26.3-16 libpcre3_1:8.31-2 libpipeline1_1.2.6-1 libpixman-1-0_0.32.4-1 libpng12-0_1.2.49-5 libpod-latex-perl_0.61-1 libpoppler19_0.18.4-10 libppl-c4_1:1.0-7 libppl12_1:1.0-7 libptexenc1_2013.20130729.30972-2+b1 libquadmath0_4.8.2-11 libreadline6_6.2+dfsg-0.1 librostlab3_1.0.20-3 librostlab3-dev_1.0.20-3 libselinux1_2.2.1-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libsigsegv2_2.10-2 libslang2_2.2.4-16 libsm6_2:1.2.1-2 libss2_1.42.9-2 libstdc++-4.8-dev_4.8.2-11 libstdc++6_4.8.2-11 libstdc++6-4.6-dev_4.6.4-5 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libterm-ui-perl_0.42-1 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5+b1 libtext-soundex-perl_3.4-1+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.20-1 libthai0_0.1.20-1 libtiff5_4.0.3-7 libtimedate-perl_2.3000-1 libtinfo5_5.9+20130608-1 libtsan0_4.8.2-11 libudev1_204-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libvpx1_1.3.0-1 libwayland-client0_1.3.0-1 libwayland-server0_1.3.0-1 libx11-6_2:1.6.2-1 libx11-data_2:1.6.2-1 libx11-xcb1_2:1.6.2-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.11-1 libxcb-dri2-0_1.10-2 libxcb-glx0_1.10-2 libxcb-render0_1.10-2 libxcb-shape0_1.10-2 libxcb-shm0_1.10-2 libxcb-xfixes0_1.10-2 libxcb1_1.10-2 libxdamage1_1:1.1.4-1 libxdmcp6_1:1.1.1-1 libxdot4_2.26.3-16 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxml2_2.9.1+dfsg1-3 libxmu6_2:1.1.1-1 libxpm4_1:3.5.10-1 libxrender1_1:0.9.8-1 libxt6_1:1.1.4-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.12.6-2 login_1:4.1.5.1-1 lsb-base_4.1+Debian12 luatex_0.76.0-3 m4_1.4.17-2 make_3.81-8.3 man-db_2.6.5-3 mawk_1.3.3-17 mount_2.20.1-5.5 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.1-5 perl-base_5.18.1-5 perl-modules_5.18.1-5 po-debconf_1.0.16+nmu2 poppler-data_0.4.6-4 preview-latex-style_11.87-1 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sudo_1.8.8-2 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.27-4 tex-common_4.04 texlive-base_2013.20131219-1 texlive-binaries_2013.20130729.30972-2+b1 texlive-fonts-recommended_2013.20131219-1 texlive-latex-base_2013.20131219-1 texlive-latex-extra_2013.20131219-1 texlive-latex-recommended_2013.20131219-1 texlive-pictures_2013.20131219-1 tzdata_2013i-1 ucf_3.0027+nmu1 util-linux_2.20.1-5.5 vim_2:7.4.052-1 vim-common_2:7.4.052-1 vim-runtime_2:7.4.052-1 x11-common_1:7.7+5 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun Dec 16 22:00:15 2012 UTC using RSA key ID 9A0C52FA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-2.dsc dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1 dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-2.debian.tar.gz Check disc space ──────────────── Sufficient free space for build Hack binNMU version ─────────────────── Created changelog entry for binNMU version 1.0.1-2clang1 User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-eef250ad-118b-4946-8bd3-856a27a2c05c SCHROOT_UID=1000 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package librostlab-blast dpkg-buildpackage: source version 1.0.1-2clang1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build librostlab-blast-1.0.1 dpkg-buildpackage: host architecture amd64 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_clean --parallel rm -f lib/librostlab-blast.tag make[1]: Leaving directory `/«PKGBUILDDIR»' dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_build --parallel make[2]: Entering directory `/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory `/«PKGBUILDDIR»' Making all in lib make[4]: Entering directory `/«PKGBUILDDIR»/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /«PKGBUILDDIR»/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ /«PKGBUILDDIR»/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ updating rostlab/blast-parser-parser.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h make all-am make[5]: Entering directory `/«PKGBUILDDIR»/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o In file included from blast-parser-driver.cpp:19: ./rostlab/blast-parser-driver.h:61:12: error: expected a class or namespace friend YY_DECL_FRIEND; ^~~~~~~~~~~~~~ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ~~~~~~~~~~~~~~~~~~~~~~~~^ In file included from blast-parser-parser.ypp:54: ./rostlab/blast-parser-driver.h:61:12: error: expected a class or namespace friend YY_DECL_FRIEND; ^~~~~~~~~~~~~~ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ~~~~~~~~~~~~~~~~~~~~~~~~^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 5 errors generated. make[5]: *** [librostlab_blast_la-blast-parser-driver.lo] Error 1 make[5]: *** Waiting for unfinished jobs.... 5 errors generated. make[5]: *** [librostlab_blast_la-blast-parser-parser.lo] Error 1 In file included from blast-parser-scanner.lpp:22: ./rostlab/blast-parser-driver.h:61:12: error: expected a class or namespace friend YY_DECL_FRIEND; ^~~~~~~~~~~~~~ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ~~~~~~~~~~~~~~~~~~~~~~~~^ blast-parser-scanner.lpp:102:7: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer = yytext; BEGIN(s_reference); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:103:7: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer += '\n'; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:103:30: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer += '\n'; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:104:72: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __yylloc->lines(yyleng); __yylloc->step(); BEGIN(INITIAL); RETS( __drv._buffer, token::REFERENCE ); ^ blast-parser-scanner.lpp:35:57: note: expanded from macro 'RETS' #define RETS(__sval,__tkn) __yylval->sval = new string( __sval ); return __tkn; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:105:7: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer.clear(); BEGIN(s_query); return token::QUERYEQ; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:106:12: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += string(yytext); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:106:36: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += string(yytext); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:106:58: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += string(yytext); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:107:41: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' yyless(0); BEGIN(s_query2); RETS( __drv._buffer, token::STRING ); ^ blast-parser-scanner.lpp:35:57: note: expanded from macro 'RETS' #define RETS(__sval,__tkn) __yylval->sval = new string( __sval ); return __tkn; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:137:18: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' yyless(1); __drv._buffer.clear(); BEGIN(s_hit); return token_type(yytext[0]); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:138:12: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:138:36: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:138:58: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:139:27: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' BEGIN(s_hsp); RETS( __drv._buffer, token::STRING ); ^ blast-parser-scanner.lpp:35:57: note: expanded from macro 'RETS' #define RETS(__sval,__tkn) __yylval->sval = new string( __sval ); return __tkn; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:158:9: error: '_n1' is a private member of 'rostlab::blast::parser_driver' __drv._n1 = yyleng; ^ ./rostlab/blast-parser-driver.h:75:19: note: declared private here int _n1, _n2; ^ blast-parser-scanner.lpp:165:7: error: '_n2' is a private member of 'rostlab::blast::parser_driver' __drv._n2 = yyleng; BEGIN(s_ali4); RETS( yytext, token::STRING ); ^ ./rostlab/blast-parser-driver.h:75:24: note: declared private here int _n1, _n2; ^ blast-parser-scanner.lpp:169:42: error: '_n1' is a private member of 'rostlab::blast::parser_driver' BEGIN(s_ali6); RETS( buf.substr( __drv._n1, __drv._n2 ), token::STRING ); ^ blast-parser-scanner.lpp:35:57: note: expanded from macro 'RETS' #define RETS(__sval,__tkn) __yylval->sval = new string( __sval ); return __tkn; ^ ./rostlab/blast-parser-driver.h:75:19: note: declared private here int _n1, _n2; ^ blast-parser-scanner.lpp:169:53: error: '_n2' is a private member of 'rostlab::blast::parser_driver' BEGIN(s_ali6); RETS( buf.substr( __drv._n1, __drv._n2 ), token::STRING ); ^ blast-parser-scanner.lpp:35:57: note: expanded from macro 'RETS' #define RETS(__sval,__tkn) __yylval->sval = new string( __sval ); return __tkn; ^ ./rostlab/blast-parser-driver.h:75:24: note: declared private here int _n1, _n2; ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make[5]: *** [librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo] Error 1 make[5]: Leaving directory `/«PKGBUILDDIR»/lib' make[4]: *** [all] Error 2 make[3]: *** [all-recursive] Error 1 make[2]: *** [all] Error 2 dh_auto_build: make -j10 returned exit code 2 make[1]: *** [override_dh_auto_build] Error 2 make[4]: Leaving directory `/«PKGBUILDDIR»/lib' make[3]: Leaving directory `/«PKGBUILDDIR»' make[2]: Leaving directory `/«PKGBUILDDIR»' make[1]: Leaving directory `/«PKGBUILDDIR»' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20140106-0702 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 7068 Build-Time: 20 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 59 Job: librostlab-blast_1.0.1-2 Machine Architecture: amd64 Package: librostlab-blast Package-Time: 131 Source-Version: 1.0.1-2 Space: 7068 Status: attempted Version: 1.0.1-2clang1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20140106-0702 Build needed 00:02:11, 7068k disc space DC-Status: Failed 131.927626871s