DC-Build-Header: apbs 1.4-1 / 2015-03-26 03:39:26 +0000 DC-Task: source:apbs version:1.4-1 architecture:any chroot:unstable esttime:1437 logfile:/tmp/apbs_1.4-1_unstable_clang.log modes:binary-only:parallel:clang DC-Sbuild-call: su user -c 'sbuild -n --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang apbs_1.4-1' sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on ip-172-31-14-16.us-west-2.compute.internal ╔══════════════════════════════════════════════════════════════════════════════╗ ║ apbs 1.4-1 (amd64) 26 Mar 2015 03:39 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: apbs Version: 1.4-1 Source Version: 1.4-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/apbs-0Cxcjc/apbs-1.4' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/apbs-0Cxcjc' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-e8f78d0c-42bd-4fbd-9c61-7eeef1a427d1' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ └──────────────────────────────────────────────────────────────────────────────┘ Get:1 http://localhost:9999 unstable InRelease [257 kB] Get:2 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:4 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Get:5 http://localhost:9999 unstable/main 2015-03-25-1448.37.pdiff [3021 B] Get:6 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [5545 B] Get:7 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [5545 B] Get:8 http://localhost:9999 unstable/main amd64 2015-03-25-1448.37.pdiff [4095 B] Get:9 http://localhost:9999 unstable/main amd64 2015-03-25-2049.47.pdiff [4595 B] Get:10 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Get:11 http://localhost:9999 unstable/main amd64 2015-03-25-2049.47.pdiff [4595 B] Get:12 http://localhost:9999 unstable/main 2015-03-25-2049.47.pdiff [2032 B] Fetched 300 kB in 4s (62.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Check APT ───────── Checking available source versions... Download source files with APT ────────────────────────────── Reading package lists... Building dependency tree... Reading state information... NOTICE: 'apbs' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debichem/unstable/apbs/ Need to get 29.7 MB of source archives. Get:1 http://localhost:9999/debian/ unstable/main apbs 1.4-1 (dsc) [1339 B] Get:2 http://localhost:9999/debian/ unstable/main apbs 1.4-1 (tar) [29.7 MB] Get:3 http://localhost:9999/debian/ unstable/main apbs 1.4-1 (diff) [9348 B] Fetched 29.7 MB in 6s (4337 kB/s) Download complete and in download only mode Check arch ────────── ┌──────────────────────────────────────────────────────────────────────────────┐ │ Chroot Setup Commands │ └──────────────────────────────────────────────────────────────────────────────┘ /tmp/clang ────────── + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.6 + echo 'Install of clang-3.6' Install of clang-3.6 + apt-get update Hit http://localhost:9999 unstable InRelease Get:1 http://localhost:9999 unstable/main Sources/DiffIndex [7876 B] Get:2 http://localhost:9999 unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://localhost:9999 unstable/main Translation-en/DiffIndex [7876 B] Fetched 23.6 kB in 1s (12.6 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.6 Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.6-doc Recommended packages: llvm-3.6-dev python The following NEW packages will be installed: clang-3.6 libbsd0 libclang-common-3.6-dev libclang1-3.6 libedit2 libffi6 libllvm3.6 libobjc-4.9-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://localhost:9999/debian/ unstable/main libffi6 amd64 3.1-2+b2 [20.1 kB] Get:4 http://localhost:9999/debian/ unstable/main libllvm3.6 amd64 1:3.6-2 [8137 kB] Get:5 http://localhost:9999/debian/ unstable/main libobjc4 amd64 4.9.2-10 [112 kB] Get:6 http://localhost:9999/debian/ unstable/main libobjc-4.9-dev amd64 4.9.2-10 [372 kB] Get:7 http://localhost:9999/debian/ unstable/main libclang1-3.6 amd64 1:3.6-2 [3839 kB] Get:8 http://localhost:9999/debian/ unstable/main libclang-common-3.6-dev amd64 1:3.6-2 [706 kB] Get:9 http://localhost:9999/debian/ unstable/main clang-3.6 amd64 1:3.6-2 [25.8 MB] debconf: unable to initialize frontend: Dialog debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 39.2 MB in 1s (38.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11980 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+b2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+b2) ... Selecting previously unselected package libllvm3.6:amd64. Preparing to unpack .../libllvm3.6_1%3a3.6-2_amd64.deb ... Unpacking libllvm3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.2-10_amd64.deb ... Unpacking libobjc4:amd64 (4.9.2-10) ... Selecting previously unselected package libobjc-4.9-dev:amd64. Preparing to unpack .../libobjc-4.9-dev_4.9.2-10_amd64.deb ... Unpacking libobjc-4.9-dev:amd64 (4.9.2-10) ... Selecting previously unselected package libclang1-3.6:amd64. Preparing to unpack .../libclang1-3.6_1%3a3.6-2_amd64.deb ... Unpacking libclang1-3.6:amd64 (1:3.6-2) ... Selecting previously unselected package libclang-common-3.6-dev. Preparing to unpack .../libclang-common-3.6-dev_1%3a3.6-2_amd64.deb ... Unpacking libclang-common-3.6-dev (1:3.6-2) ... Selecting previously unselected package clang-3.6. Preparing to unpack .../clang-3.6_1%3a3.6-2_amd64.deb ... Unpacking clang-3.6 (1:3.6-2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libffi6:amd64 (3.1-2+b2) ... Setting up libllvm3.6:amd64 (1:3.6-2) ... Setting up libobjc4:amd64 (4.9.2-10) ... Setting up libobjc-4.9-dev:amd64 (4.9.2-10) ... Setting up libclang1-3.6:amd64 (1:3.6-2) ... Setting up libclang-common-3.6-dev (1:3.6-2) ... Setting up clang-3.6 (1:3.6-2) ... Processing triggers for libc-bin (2.19-17) ... + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.6 g++-4.6 + ln -s clang-3.6 gcc-4.6 + ln -s clang-3.6 cpp-4.6 + ln -s clang-3.6 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections + echo 'g++-4.6 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.6 g++-4.7 + ln -s clang-3.6 gcc-4.7 + ln -s clang-3.6 cpp-4.7 + ln -s clang-3.6 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections + echo 'g++-4.7 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.6 g++-4.8 + ln -s clang-3.6 gcc-4.8 + ln -s clang-3.6 cpp-4.8 + ln -s clang-3.6 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.6 g++-4.9 + ln -s clang-3.6 gcc-4.9 + ln -s clang-3.6 cpp-4.9 + ln -s clang-3.6 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections + echo 'g++-4.9 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.6 g++-5 + ln -s clang-3.6 gcc-5 + ln -s clang-3.6 cpp-5 + ln -s clang-3.6 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + cd - /«BUILDDIR» + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. ──────────────────────────────────────────────────────────────────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-eSkEy2/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/816 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12200 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), cmake, debhelper (>> 7.0.50~), libmaloc-dev, libpython-dev, mpi-default-dev (>= 0.3), python-minimal (>> 2.6.6-3~), python-setuptools, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), cmake, debhelper (>> 7.0.50~), libmaloc-dev, libpython-dev, mpi-default-dev (>= 0.3), python-minimal (>> 2.6.6-3~), python-setuptools, zlib1g-dev dpkg-deb: building package `sbuild-build-depends-apbs-dummy' in `/«BUILDDIR»/resolver-JhjXPm/apt_archive/sbuild-build-depends-apbs-dummy.deb'. OK Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install apbs build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake cmake-data debhelper file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgssapi-krb5-2 libhogweed2 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu52 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libltdl-dev libltdl7 liblzo2-2 libmagic1 libmaloc-dev libmaloc1 libnettle4 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libp11-kit0 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-minimal python-pkg-resources python-setuptools python2.7 python2.7-minimal zlib1g-dev Suggested packages: wamerican wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc groff lrzip blcr-dkms gnutls-bin krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc www-browser libmail-box-perl python-doc python-tk python-distribute python-distribute-doc python2.7-doc binfmt-support Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins krb5-locales libtool libsasl2-modules xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgssapi-krb5-2 libhogweed2 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu52 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libltdl-dev libltdl7 liblzo2-2 libmagic1 libmaloc-dev libmaloc1 libnettle4 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libp11-kit0 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-minimal python-pkg-resources python-setuptools python2.7 python2.7-minimal sbuild-build-depends-apbs-dummy zlib1g-dev 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 51.2 MB/51.2 MB of archives. After this operation, 151 MB of additional disk space will be used. Get:1 http://localhost:9999/debian/ unstable/main libpipeline1 amd64 1.4.0-1 [27.9 kB] Get:2 http://localhost:9999/debian/ unstable/main libssl1.0.0 amd64 1.0.1k-3 [1037 kB] Get:3 http://localhost:9999/debian/ unstable/main groff-base amd64 1.22.3-1 [1205 kB] Get:4 http://localhost:9999/debian/ unstable/main bsdmainutils amd64 9.0.6 [183 kB] Get:5 http://localhost:9999/debian/ unstable/main man-db amd64 2.7.0.2-5 [1000 kB] Get:6 http://localhost:9999/debian/ unstable/main libasprintf0c2 amd64 0.19.3-2 [31.3 kB] Get:7 http://localhost:9999/debian/ unstable/main libnettle4 amd64 2.7.1-5 [176 kB] Get:8 http://localhost:9999/debian/ unstable/main libhogweed2 amd64 2.7.1-5 [125 kB] Get:9 http://localhost:9999/debian/ unstable/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:10 http://localhost:9999/debian/ unstable/main libtasn1-6 amd64 4.2-2 [48.6 kB] Get:11 http://localhost:9999/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.8-6 [694 kB] Get:12 http://localhost:9999/debian/ unstable/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:13 http://localhost:9999/debian/ unstable/main libkrb5support0 amd64 1.12.1+dfsg-19 [58.5 kB] Get:14 http://localhost:9999/debian/ unstable/main libk5crypto3 amd64 1.12.1+dfsg-19 [115 kB] Get:15 http://localhost:9999/debian/ unstable/main libkrb5-3 amd64 1.12.1+dfsg-19 [303 kB] Get:16 http://localhost:9999/debian/ unstable/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19 [150 kB] Get:17 http://localhost:9999/debian/ unstable/main libidn11 amd64 1.29-1+b2 [136 kB] Get:18 http://localhost:9999/debian/ unstable/main libsasl2-modules-db amd64 2.1.26.dfsg1-13 [67.0 kB] Get:19 http://localhost:9999/debian/ unstable/main libsasl2-2 amd64 2.1.26.dfsg1-13 [104 kB] Get:20 http://localhost:9999/debian/ unstable/main libldap-2.4-2 amd64 2.4.40-4 [217 kB] Get:21 http://localhost:9999/debian/ unstable/main libmagic1 amd64 1:5.22+15-2 [249 kB] Get:22 http://localhost:9999/debian/ unstable/main libsqlite3-0 amd64 3.8.7.4-1 [439 kB] Get:23 http://localhost:9999/debian/ unstable/main libicu52 amd64 52.1-8 [6780 kB] Get:24 http://localhost:9999/debian/ unstable/main libxml2 amd64 2.9.2+dfsg1-3 [934 kB] Get:25 http://localhost:9999/debian/ unstable/main libpython2.7-minimal amd64 2.7.9-2 [376 kB] Get:26 http://localhost:9999/debian/ unstable/main python2.7-minimal amd64 2.7.9-2 [1401 kB] Get:27 http://localhost:9999/debian/ unstable/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:28 http://localhost:9999/debian/ unstable/main mime-support all 3.58 [36.0 kB] Get:29 http://localhost:9999/debian/ unstable/main libexpat1 amd64 2.1.0-6+b3 [80.3 kB] Get:30 http://localhost:9999/debian/ unstable/main libpython2.7-stdlib amd64 2.7.9-2 [1844 kB] Get:31 http://localhost:9999/debian/ unstable/main python2.7 amd64 2.7.9-2 [251 kB] Get:32 http://localhost:9999/debian/ unstable/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:33 http://localhost:9999/debian/ unstable/main python amd64 2.7.9-1 [151 kB] Get:34 http://localhost:9999/debian/ unstable/main cmake-data all 3.0.2-1 [929 kB] Get:35 http://localhost:9999/debian/ unstable/main liblzo2-2 amd64 2.08-1.2 [54.6 kB] Get:36 http://localhost:9999/debian/ unstable/main libarchive13 amd64 3.1.2-11 [269 kB] Get:37 http://localhost:9999/debian/ unstable/main librtmp1 amd64 2.4+20131018.git79459a2-5 [59.6 kB] Get:38 http://localhost:9999/debian/ unstable/main libssh2-1 amd64 1.4.3-4.1 [125 kB] Get:39 http://localhost:9999/debian/ unstable/main libcurl3 amd64 7.38.0-4 [259 kB] Get:40 http://localhost:9999/debian/ unstable/main cmake amd64 3.0.2-1 [2384 kB] Get:41 http://localhost:9999/debian/ unstable/main libglib2.0-0 amd64 2.42.1-1 [2401 kB] Get:42 http://localhost:9999/debian/ unstable/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:43 http://localhost:9999/debian/ unstable/main libgfortran3 amd64 4.9.2-10 [255 kB] Get:44 http://localhost:9999/debian/ unstable/main libltdl7 amd64 2.4.2-1.11 [45.2 kB] Get:45 http://localhost:9999/debian/ unstable/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:46 http://localhost:9999/debian/ unstable/main libpython2.7 amd64 2.7.9-2 [1080 kB] Get:47 http://localhost:9999/debian/ unstable/main libexpat1-dev amd64 2.1.0-6+b3 [126 kB] Get:48 http://localhost:9999/debian/ unstable/main libpython2.7-dev amd64 2.7.9-2 [18.6 MB] Get:49 http://localhost:9999/debian/ unstable/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:50 http://localhost:9999/debian/ unstable/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:51 http://localhost:9999/debian/ unstable/main file amd64 1:5.22+15-2 [60.1 kB] Get:52 http://localhost:9999/debian/ unstable/main gettext-base amd64 0.19.3-2 [121 kB] Get:53 http://localhost:9999/debian/ unstable/main gettext amd64 0.19.3-2 [1240 kB] Get:54 http://localhost:9999/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:55 http://localhost:9999/debian/ unstable/main po-debconf all 1.0.16+nmu3 [220 kB] Get:56 http://localhost:9999/debian/ unstable/main debhelper all 9.20150101 [813 kB] Get:57 http://localhost:9999/debian/ unstable/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:58 http://localhost:9999/debian/ unstable/main libltdl-dev amd64 2.4.2-1.11 [157 kB] Get:59 http://localhost:9999/debian/ unstable/main libmaloc1 amd64 0.2-3 [49.0 kB] Get:60 http://localhost:9999/debian/ unstable/main libmaloc-dev amd64 0.2-3 [95.3 kB] Get:61 http://localhost:9999/debian/ unstable/main libpython-dev amd64 2.7.9-1 [19.6 kB] Get:62 http://localhost:9999/debian/ unstable/main python-pkg-resources all 5.5.1-1 [64.4 kB] Get:63 http://localhost:9999/debian/ unstable/main python-setuptools all 5.5.1-1 [242 kB] Get:64 http://localhost:9999/debian/ unstable/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:65 http://localhost:9999/debian/ unstable/main libnuma-dev amd64 2.0.10-1 [45.3 kB] Get:66 http://localhost:9999/debian/ unstable/main libhwloc-dev amd64 1.10.0-3 [142 kB] Get:67 http://localhost:9999/debian/ unstable/main libibverbs1 amd64 1.1.8-1 [32.0 kB] Get:68 http://localhost:9999/debian/ unstable/main libibverbs-dev amd64 1.1.8-1 [85.4 kB] Get:69 http://localhost:9999/debian/ unstable/main libopenmpi1.6 amd64 1.6.5-9.2 [1457 kB] Get:70 http://localhost:9999/debian/ unstable/main openmpi-common all 1.6.5-9.2 [110 kB] Get:71 http://localhost:9999/debian/ unstable/main libopenmpi-dev amd64 1.6.5-9.2 [450 kB] Get:72 http://localhost:9999/debian/ unstable/main mpi-default-dev amd64 1.0.2+nmu2 [3962 B] Extracting templates from packages: 41% Extracting templates from packages: 82% Extracting templates from packages: 100% Preconfiguring packages ... 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Setting up sbuild-build-depends-apbs-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-17) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.24 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-17 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt7-1 Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.7 apt-utils_1.0.9.7 base-files_8 base-passwd_3.5.37 bash_4.3-12 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-5 build-essential_11.7 bzip2_1.0.6-7+b2 clang-3.6_1:3.6-2 cmake_3.0.2-1 cmake-data_3.0.2-1 coreutils_8.23-4 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4+b1 debconf_1.5.56 debfoster_2.7-2 debhelper_9.20150101 debian-archive-keyring_2014.3 debianutils_4.4+b1 diffutils_1:3.3-1+b1 dmsetup_2:1.02.90-2.1 dpkg_1.17.24 dpkg-dev_1.17.24 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9+b1 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.3-2 gettext-base_0.19.3-2 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 initscripts_2.88dsf-58 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 less_458-3 libacl1_2.2.52-2 libapt-inst1.5_1.0.9.7 libapt-pkg4.12_1.0.9.7 libarchive13_3.1.2-11 libasan1_4.9.2-10 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1+b1 libblkid1_2.25.2-5 libbsd0_0.7.0-2 libbz2-1.0_1.0.6-7+b2 libc-bin_2.19-17 libc-dev-bin_2.19-17 libc6_2.19-17 libc6-dev_2.19-17 libcap2_1:2.24-7 libcap2-bin_1:2.24-7 libcilkrts5_4.9.2-10 libclang-common-3.6-dev_1:3.6-2 libclang1-3.6_1:3.6-2 libcloog-isl4_0.18.2-1+b2 libcomerr2_1.42.12-1.1 libcr0_0.8.5-2.2 libcroco3_0.6.8-3+b1 libcryptsetup4_2:1.6.6-5 libcurl3_7.38.0-4 libdb5.3_5.3.28-9 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.1 libdpkg-perl_1.17.24 libedit2_3.1-20140620-2 libexpat1_2.1.0-6+b3 libexpat1-dev_2.1.0-6+b3 libfakeroot_1.20.2-1 libffi6_3.1-2+b2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_4.9.2-10 libglib2.0-0_2.42.1-1 libgmp10_2:6.0.0+dfsg-6 libgnutls-deb0-28_3.3.8-6 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libgssapi-krb5-2_1.12.1+dfsg-19 libhogweed2_2.7.1-5 libhwloc-dev_1.10.0-3 libhwloc5_1.10.0-3 libibverbs-dev_1.1.8-1 libibverbs1_1.1.8-1 libicu52_52.1-8 libidn11_1.29-1+b2 libisl10_0.12.2-2 libitm1_4.9.2-10 libk5crypto3_1.12.1+dfsg-19 libkeyutils1_1.5.9-5+b1 libkmod2_20-1 libkrb5-3_1.12.1+dfsg-19 libkrb5support0_1.12.1+dfsg-19 libldap-2.4-2_2.4.40-4 libllvm3.6_1:3.6-2 liblsan0_4.9.2-10 libltdl-dev_2.4.2-1.11 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2+b3 liblzo2-2_2.08-1.2 libmagic1_1:5.22+15-2 libmaloc-dev_0.2-3 libmaloc1_0.2-3 libmount1_2.25.2-5 libmpc3_1.0.3-1 libmpfr4_3.1.2-3 libncurses5_5.9+20140913-1+b1 libncursesw5_5.9+20140913-1+b1 libnettle4_2.7.1-5 libnuma-dev_2.0.10-1 libnuma1_2.0.10-1 libobjc-4.9-dev_4.9.2-10 libobjc4_4.9.2-10 libopenmpi-dev_1.6.5-9.2 libopenmpi1.6_1.6.5-9.2 libp11-kit0_0.20.7-1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libprocps3_2:3.3.9-9 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.9-2 libpython2.7-dev_2.7.9-2 libpython2.7-minimal_2.7.9-2 libpython2.7-stdlib_2.7.9-2 libquadmath0_4.9.2-10 libreadline6_6.3-8+b3 librtmp1_2.4+20131018.git79459a2-5 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1+b1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-5 libsqlite3-0_3.8.7.4-1 libss2_1.42.12-1.1 libssh2-1_1.4.3-4.1 libssl1.0.0_1.0.1k-3 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsystemd0_215-12 libtasn1-6_4.2-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1+b1 libtsan0_4.9.2-10 libubsan0_4.9.2-10 libudev1_215-12 libunistring0_0.9.3-5.2+b1 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3+b2 libuuid1_2.25.2-5 libxml2_2.9.2+dfsg1-3 linux-libc-dev_3.16.7-ckt7-1 login_1:4.2-3 lsb-base_4.1+Debian13+nmu1 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17 mime-support_3.58 mount_2.25.2-5 mpi-default-dev_1.0.2+nmu2 multiarch-support_2.19-17 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1+b1 nvi_1.81.6-11+b1 openmpi-common_1.6.5-9.2 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-2 perl-base_5.20.2-2 perl-modules_5.20.2-2 po-debconf_1.0.16+nmu3 procps_2:3.3.9-9 python_2.7.9-1 python-minimal_2.7.9-1 python-pkg-resources_5.5.1-1 python-setuptools_5.5.1-1 python2.7_2.7.9-2 python2.7-minimal_2.7.9-2 readline-common_6.3-8 sbuild-build-depends-apbs-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-4+b1 sensible-utils_0.0.9 startpar_0.59-3 sudo_1.8.12-1 systemd_215-12 systemd-sysv_215-12 sysv-rc_2.88dsf-58 sysvinit-utils_2.88dsf-58 tar_1.27.1-2+b1 tzdata_2015b-1 udev_215-12 util-linux_2.25.2-5 xz-utils_5.1.1alpha+20120614-2+b3 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Aug 8 17:11:47 2013 UTC using DSA key ID 088F6B8C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./apbs_1.4-1.dsc dpkg-source: info: extracting apbs in apbs-1.4 dpkg-source: info: unpacking apbs_1.4.orig.tar.gz dpkg-source: info: unpacking apbs_1.4-1.debian.tar.gz dpkg-source: info: applying debian_testfiles.patch dpkg-source: info: applying debian_make.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=10 HOME=/sbuild-nonexistent LOGNAME=user PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user SCHROOT_SESSION_ID=unstable-amd64-sbuild-e8f78d0c-42bd-4fbd-9c61-7eeef1a427d1 SCHROOT_UID=1001 SCHROOT_USER=user SHELL=/bin/sh USER=user dpkg-buildpackage ───────────────── dpkg-buildpackage: source package apbs dpkg-buildpackage: source version 1.4-1 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Debichem Team dpkg-source --before-build apbs-1.4 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel debian/rules override_dh_clean make[1]: Entering directory '/«PKGBUILDDIR»' (cd /«PKGBUILDDIR»/build && /bin/bash cleanup.sh) rm: missing operand Try 'rm --help' for more information. make[1]: [override_dh_clean] Error 123 (ignored) debian/rules:26: recipe for target 'override_dh_clean' failed dh_clean make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On \ -DBUILD_DOC=Off -DBUILD_TOOLS=Off \ -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_ZLIB=On \ -DENABLE_PYTHON=On -DENABLE_READLINE=Off \ -DFETK_PATH=/usr -DENABLE_FETK=Off -- The C compiler identification is Clang 3.6.0 -- The CXX compiler identification is Clang 3.6.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machien epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Checking for math library -- The math library was found: /usr/lib/x86_64-linux-gnu/libm.so -- Checking for the liberty library CMake Warning at CMakeLists.txt:193 (message): Liberty library not found -- The nsl library was found: /usr/lib/x86_64-linux-gnu/libnsl.so CMake Warning at CMakeLists.txt:237 (message): The socket library was not found CMake Warning at CMakeLists.txt:259 (message): The thread library was not found -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Found fetk: /usr -- Looking for include file maloc/maloc.h -- Looking for include file maloc/maloc.h - found -- External maloc headers found -- External maloc library was found: /usr/lib/libmaloc.so -- Checking for zlib -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- The zlib library was found: /usr/lib/x86_64-linux-gnu/libz.so -- Inline functions enabled -- Looking for python components CMake Error at CMakeLists.txt:675 (message): Python wrappers require GNU compilers -- Configuring incomplete, errors occurred! See also "/«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log". dh_auto_configure: cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On -DBUILD_DOC=Off -DBUILD_TOOLS=Off -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_ZLIB=On -DENABLE_PYTHON=On -DENABLE_READLINE=Off -DFETK_PATH=/usr -DENABLE_FETK=Off returned exit code 1 make[1]: *** [override_dh_auto_configure] Error 2 debian/rules:15: recipe for target 'override_dh_auto_configure' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [build-arch] Error 2 debian/rules:12: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150326-0340 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Purging /«BUILDDIR» Not cleaning session: cloned chroot in use ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 73344 Build-Time: 7 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 21 Job: apbs_1.4-1 Machine Architecture: amd64 Package: apbs Package-Time: 61 Source-Version: 1.4-1 Space: 73344 Status: attempted Version: 1.4-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150326-0340 Build needed 00:01:01, 73344k disc space DC-Status: Failed 61.061566552s DC-Time-Estimation: 61.061566552 versus expected 1437 (r/m: 22.533624850195277 ; m: 61.061566552)