DC-Build-Header: iqtree 1.4.3+dfsg-1 / 2016-08-29 16:24:53 +0000 DC-Task: type:rebuild-binarch-only source:iqtree version:1.4.3+dfsg-1 chroot:unstable esttime:500 logfile:/tmp/iqtree_1.4.3+dfsg-1_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang iqtree_1.4.3+dfsg-1' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-8-167.eu-central-1.compute.internal +==============================================================================+ | iqtree 1.4.3+dfsg-1 (amd64) Mon, 29 Aug 2016 16:24:53 +0000 | +==============================================================================+ Package: iqtree Version: 1.4.3+dfsg-1 Source Version: 1.4.3+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-27c2eff6-be0c-41b7-98ec-0091e2608f14' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 2s (2023 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 1s (21.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/iqtree-NIYTFk + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (69.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'iqtree' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/iqtree.git Please use: git clone https://anonscm.debian.org/git/debian-med/iqtree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1482 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main iqtree 1.4.3+dfsg-1 (dsc) [2089 B] Get:2 http://127.0.0.1:9999/debian unstable/main iqtree 1.4.3+dfsg-1 (tar) [1459 kB] Get:3 http://127.0.0.1:9999/debian unstable/main iqtree 1.4.3+dfsg-1 (diff) [21.0 kB] Fetched 1482 kB in 0s (7937 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/iqtree-NIYTFk/iqtree-1.4.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/iqtree-NIYTFk' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-gypKg8/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-gypKg8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gypKg8/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-gypKg8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gypKg8/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-gypKg8/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-gypKg8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), cmake, libeigen3-dev, libsprng2-dev, zlib1g-dev, help2man, time Filtered Build-Depends: debhelper (>= 9), cmake, libeigen3-dev, libsprng2-dev, zlib1g-dev, help2man, time dpkg-deb: building package 'sbuild-build-depends-iqtree-dummy' in '/<>/resolver-NfUrs1/apt_archive/sbuild-build-depends-iqtree-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-iqtree-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-NfUrs1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NfUrs1/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-NfUrs1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NfUrs1/apt_archive ./ Sources [379 B] Get:5 copy:/<>/resolver-NfUrs1/apt_archive ./ Packages [468 B] Fetched 1804 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install iqtree build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libcroco3 libcurl3 libeigen3-dev libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls30 libgssapi-krb5-2 libhogweed4 libicu57 libidn11 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 libprocps6 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsprng2 libsprng2-dev libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 lsb-base m4 man-db pkg-config po-debconf procps time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libeigen3-doc libmrpt-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-bin krb5-doc krb5-user libsprng2-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libcroco3 libcurl3 libeigen3-dev libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls30 libgssapi-krb5-2 libhogweed4 libicu57 libidn11 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 libprocps6 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsprng2 libsprng2-dev libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 lsb-base m4 man-db pkg-config po-debconf procps sbuild-build-depends-iqtree-dummy time zlib1g-dev 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 30.9 MB of archives. After this operation, 112 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NfUrs1/apt_archive ./ sbuild-build-depends-iqtree-dummy 0.invalid.0 [812 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.6.1-1 [1152 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.12-2 [57.7 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20160629 [27.6 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.12-2 [250 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2 [54.6 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libnettle6 amd64 3.2-1 [191 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.1-2 [288 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.14.3+dfsg-1 [61.0 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.14.3+dfsg-1 [115 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.14.3+dfsg-1 [311 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.14.3+dfsg-1 [154 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-1 [115 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libhogweed4 amd64 3.2-1 [136 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libp11-kit0 amd64 0.23.2-5 [111 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libtasn1-6 amd64 4.9-4 [50.0 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libgnutls30 amd64 3.5.3-3 [801 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [66.9 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [103 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2+b2 [222 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.13.0-1 [79.4 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [60.0 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.7.0-1 [138 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.50.1-1 [280 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.6.1-1 [2736 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3 [18.4 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 help2man amd64 1.47.4 [162 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.1.1+dfsg-1 [22.3 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libgmp-dev amd64 2:6.1.1+dfsg-1 [629 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libsprng2 amd64 2.0a-10 [75.6 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libsprng2-dev amd64 2.0a-10 [78.0 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4 [62.5 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 time amd64 1.7-25.1 [31.0 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libeigen3-dev all 3.3~beta2-1 [793 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.9 MB in 0s (81.7 MB/s) Selecting previously unselected package groff-base. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_amd64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.10_amd64.deb ... Unpacking bsdmainutils (9.0.10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../04-cmake-data_3.6.1-1_all.deb ... Unpacking cmake-data (3.6.1-1) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../05-libprocps6_2%3a3.3.12-2_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-2) ... Selecting previously unselected package lsb-base. 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Unpacking libarchive13:amd64 (3.2.1-2) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../13-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../14-libkrb5support0_1.14.3+dfsg-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.14.3+dfsg-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../15-libk5crypto3_1.14.3+dfsg-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.14.3+dfsg-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../16-libkrb5-3_1.14.3+dfsg-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.14.3+dfsg-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../17-libgssapi-krb5-2_1.14.3+dfsg-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ... Selecting previously unselected package libidn11:amd64. 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Unpacking libgmp-dev:amd64 (2:6.1.1+dfsg-1) ... Selecting previously unselected package libsprng2. Preparing to unpack .../61-libsprng2_2.0a-10_amd64.deb ... Unpacking libsprng2 (2.0a-10) ... Selecting previously unselected package libsprng2-dev. Preparing to unpack .../62-libsprng2-dev_2.0a-10_amd64.deb ... Unpacking libsprng2-dev (2.0a-10) ... Selecting previously unselected package pkg-config. Preparing to unpack .../63-pkg-config_0.29-4_amd64.deb ... Unpacking pkg-config (0.29-4) ... Selecting previously unselected package time. Preparing to unpack .../64-time_1.7-25.1_amd64.deb ... Unpacking time (1.7-25.1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../65-zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../66-libeigen3-dev_3.3~beta2-1_all.deb ... Unpacking libeigen3-dev (3.3~beta2-1) ... Selecting previously unselected package sbuild-build-depends-iqtree-dummy. Preparing to unpack .../67-sbuild-build-depends-iqtree-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-iqtree-dummy (0.invalid.0) ... Setting up libnettle6:amd64 (3.2-1) ... Setting up libexpat1:amd64 (2.2.0-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libnghttp2-14:amd64 (1.13.0-1) ... Setting up time (1.7-25.1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up libsprng2 (2.0a-10) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.48.1-3) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up gettext-base (0.19.8.1-1) ... Setting up cmake-data (3.6.1-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:amd64 (57.1-3) ... Setting up libprocps6:amd64 (2:3.3.12-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1+b1) ... Setting up libtasn1-6:amd64 (4.9-4) ... Setting up libmagic-mgc (1:5.28-4) ... Setting up libmagic1:amd64 (1:5.28-4) ... Setting up libhogweed4:amd64 (3.2-1) ... Setting up lsb-base (9.20160629) ... Setting up procps (2:3.3.12-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.11-1) ... Setting up libssl1.0.2:amd64 (1.0.2h-1) ... Setting up pkg-config (0.29-4) ... Setting up libssh2-1:amd64 (1.7.0-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libp11-kit0:amd64 (0.23.2-5) ... Setting up liblocale-gettext-perl (1.07-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up bsdmainutils (9.0.10) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:amd64 (2:6.1.1+dfsg-1) ... Setting up autopoint (0.19.8.1-1) ... Setting up libidn11:amd64 (1.33-1) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libgmp-dev:amd64 (2:6.1.1+dfsg-1) ... Setting up gettext (0.19.8.1-1) ... Setting up libarchive13:amd64 (3.2.1-2) ... Setting up libeigen3-dev (3.3~beta2-1) ... Setting up libgnutls30:amd64 (3.5.3-3) ... Setting up autoconf (2.69-10) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up file (1:5.28-4) ... Setting up libkrb5support0:amd64 (1.14.3+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libsprng2-dev (2.0a-10) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2+b2) ... Setting up automake (1:1.15-4) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.4) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up libk5crypto3:amd64 (1.14.3+dfsg-1) ... Setting up po-debconf (1.0.19) ... Setting up libkrb5-3:amd64 (1.14.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ... Setting up libcurl3:amd64 (7.50.1-1) ... Setting up cmake (3.6.1-1) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160814) ... Setting up sbuild-build-depends-iqtree-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.27-6 dpkg-dev_1.18.10 g++-6_6.2.0-1 gcc-6_6.2.0-1 libc6-dev_2.23-5 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 linux-libc-dev_4.7.2-1 Package versions: adduser_3.115 apt_1.3~rc2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6 base-passwd_3.5.40 bash_4.3-15 binutils_2.27-6 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 clang-3.8_1:3.8.1-9 cmake_3.6.1-1 cmake-data_3.6.1-1 coreutils_8.25-2 cpp_4:6.1.1-1 cpp-6_6.2.0-1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debian-archive-keyring_2014.3 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 eatmydata_105-3 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1 g++-6_6.2.0-1 gcc_4:6.1.1-1 gcc-6_6.2.0-1 gcc-6-base_6.2.0-1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gpgv_2.1.14-5 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 help2man_1.47.4 hostname_3.18 init-system-helpers_1.42 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapt-pkg5.0_1.3~rc2 libarchive-zip-perl_1.59-1 libarchive13_3.2.1-2 libasan3_6.2.0-1 libatomic1_6.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libblkid1_2.28.1-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-5 libc-dev-bin_2.23-5 libc6_2.23-5 libc6-dev_2.23-5 libcap-ng0_0.7.7-3 libcc1-0_6.2.0-1 libcilkrts5_6.2.0-1 libclang-common-3.8-dev_1:3.8.1-9 libclang1-3.8_1:3.8.1-9 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcurl3_7.50.1-1 libdb5.3_5.3.28-12 libdebconfclient0_0.215 libdpkg-perl_1.18.10 libeatmydata1_105-3 libedit2_3.1-20150325-1+b1 libeigen3-dev_3.3~beta2-1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.0-1 libgcc1_1:6.2.0-1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libglib2.0-0_2.48.1-3 libgmp-dev_2:6.1.1+dfsg-1 libgmp10_2:6.1.1+dfsg-1 libgmpxx4ldbl_2:6.1.1+dfsg-1 libgnutls30_3.5.3-3 libgomp1_6.2.0-1 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-1 libhogweed4_3.2-1 libicu57_57.1-3 libidn11_1.33-1 libisl15_0.17.1-1 libitm1_6.2.0-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.14.3+dfsg-1 libkeyutils1_1.5.9-9 libkrb5-3_1.14.3+dfsg-1 libkrb5support0_1.14.3+dfsg-1 libldap-2.4-2_2.4.42+dfsg-2+b2 libllvm3.8_1:3.8.1-9 liblocale-gettext-perl_1.07-3 liblsan0_6.2.0-1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libmpx2_6.2.0-1 libncurses5_6.0+20160625-1 libncursesw5_6.0+20160625-1 libnettle6_3.2-1 libnghttp2-14_1.13.0-1 libobjc-6-dev_6.2.0-1 libobjc4_6.2.0-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libprocps6_2:3.3.12-2 libquadmath0_6.2.0-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28.1-1 libsprng2_2.0a-10 libsprng2-dev_2.0a-10 libss2_1.43.1-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 libsystemd0_231-5 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtool_2.4.6-2 libtsan0_6.2.0-1 libubsan0_6.2.0-1 libudev1_231-5 libunistring0_0.9.6+really0.9.3-0.1 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libxml2_2.9.4+dfsg1-1+b1 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 lsb-base_9.20160629 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mount_2.28.1-1 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-config_0.29-4 po-debconf_1.0.19 procps_2:3.3.12-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-iqtree-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 time_1.7-25.1 util-linux_2.28.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 15 20:34:16 2016 UTC using RSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./iqtree_1.4.3+dfsg-1.dsc dpkg-source: info: extracting iqtree in /<>/iqtree-1.4.3+dfsg dpkg-source: info: unpacking iqtree_1.4.3+dfsg.orig.tar.xz dpkg-source: info: unpacking iqtree_1.4.3+dfsg-1.debian.tar.xz dpkg-source: info: applying spelling.patch dpkg-source: info: applying sse.patch dpkg-source: info: applying 32bit_name.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-27c2eff6-be0c-41b7-98ec-0091e2608f14 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package iqtree dpkg-buildpackage: info: source version 1.4.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build iqtree-1.4.3+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/iqtree-1.4.3+dfsg' dh_auto_clean -Bbuild.omp dh_auto_clean -Bbuild.serial dh override_dh_auto_clean --parallel make[1]: Leaving directory '/<>/iqtree-1.4.3+dfsg' dh_clean debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/iqtree-1.4.3+dfsg' dh_auto_configure -Bbuild.omp -- -DIQTREE_FLAGS="omp" cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DIQTREE_FLAGS=omp -- The C compiler identification is Clang 3.8.1 -- The CXX compiler identification is Clang 3.8.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done IQ-TREE flags : omp Target OS : Unix Compiler : Clang Target binary : 64-bit Parallel : OpenMP/PThreads Vectorization : SSE2 -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") Using system zlib -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/iqtree-1.4.3+dfsg/build.omp dh_auto_configure -Bbuild.serial -- -DIQTREE_FLAGS="" cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DIQTREE_FLAGS= -- The C compiler identification is Clang 3.8.1 -- The CXX compiler identification is Clang 3.8.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done IQ-TREE flags : Target OS : Unix Compiler : Clang Target binary : 64-bit Parallel : None Vectorization : SSE2 -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") Using system zlib -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/iqtree-1.4.3+dfsg/build.serial dh override_dh_auto_configure --parallel make[1]: Leaving directory '/<>/iqtree-1.4.3+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/iqtree-1.4.3+dfsg' dh_auto_build -Bbuild.omp make -j1 make[2]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' /usr/bin/cmake -H/<>/iqtree-1.4.3+dfsg -B/<>/iqtree-1.4.3+dfsg/build.omp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/iqtree-1.4.3+dfsg/build.omp/CMakeFiles /<>/iqtree-1.4.3+dfsg/build.omp/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f CMakeFiles/avxkernel.dir/build.make CMakeFiles/avxkernel.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/CMakeFiles/avxkernel.dir/DependInfo.cmake --color= Scanning dependencies of target avxkernel make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f CMakeFiles/avxkernel.dir/build.make CMakeFiles/avxkernel.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 0%] Building CXX object CMakeFiles/avxkernel.dir/phylotreeavx.cpp.o /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -D__AVX -mavx -o CMakeFiles/avxkernel.dir/phylotreeavx.cpp.o -c /<>/iqtree-1.4.3+dfsg/phylotreeavx.cpp [ 1%] Linking CXX static library libavxkernel.a /usr/bin/cmake -P CMakeFiles/avxkernel.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/avxkernel.dir/link.txt --verbose=1 /usr/bin/ar qc libavxkernel.a CMakeFiles/avxkernel.dir/phylotreeavx.cpp.o /usr/bin/ranlib libavxkernel.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 1%] Built target avxkernel make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/gsl /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/gsl /<>/iqtree-1.4.3+dfsg/build.omp/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= Scanning dependencies of target gsl make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 1%] Building CXX object gsl/CMakeFiles/gsl.dir/binomial_tpe.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -o CMakeFiles/gsl.dir/binomial_tpe.cpp.o -c /<>/iqtree-1.4.3+dfsg/gsl/binomial_tpe.cpp [ 2%] Building CXX object gsl/CMakeFiles/gsl.dir/multinomial.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -o CMakeFiles/gsl.dir/multinomial.cpp.o -c /<>/iqtree-1.4.3+dfsg/gsl/multinomial.cpp [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/pow_int.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -o CMakeFiles/gsl.dir/pow_int.cpp.o -c /<>/iqtree-1.4.3+dfsg/gsl/pow_int.cpp [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/gauss.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -o CMakeFiles/gsl.dir/gauss.cpp.o -c /<>/iqtree-1.4.3+dfsg/gsl/gauss.cpp [ 4%] Building CXX object gsl/CMakeFiles/gsl.dir/gaussinv.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -o CMakeFiles/gsl.dir/gaussinv.cpp.o -c /<>/iqtree-1.4.3+dfsg/gsl/gaussinv.cpp [ 5%] Building CXX object gsl/CMakeFiles/gsl.dir/gausspdf.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -o CMakeFiles/gsl.dir/gausspdf.cpp.o -c /<>/iqtree-1.4.3+dfsg/gsl/gausspdf.cpp [ 5%] Linking CXX static library libgsl.a cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/cmake -P CMakeFiles/gsl.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/gsl && /usr/bin/cmake -E cmake_link_script CMakeFiles/gsl.dir/link.txt --verbose=1 /usr/bin/ar qc libgsl.a CMakeFiles/gsl.dir/binomial_tpe.cpp.o CMakeFiles/gsl.dir/multinomial.cpp.o CMakeFiles/gsl.dir/pow_int.cpp.o CMakeFiles/gsl.dir/gauss.cpp.o CMakeFiles/gsl.dir/gaussinv.cpp.o CMakeFiles/gsl.dir/gausspdf.cpp.o /usr/bin/ranlib libgsl.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 5%] Built target gsl make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/pll /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/pll /<>/iqtree-1.4.3+dfsg/build.omp/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= Scanning dependencies of target pll make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 5%] Building C object pll/CMakeFiles/pll.dir/alignment.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/alignment.c.o -c /<>/iqtree-1.4.3+dfsg/pll/alignment.c [ 6%] Building C object pll/CMakeFiles/pll.dir/bipartitionList.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/bipartitionList.c.o -c /<>/iqtree-1.4.3+dfsg/pll/bipartitionList.c /<>/iqtree-1.4.3+dfsg/pll/bipartitionList.c:332:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(e->bitVector), PLL_BYTE_ALIGNMENT, (size_t)vectorLength * sizeof(unsigned int)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ 1 warning generated. [ 7%] Building C object pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o -c /<>/iqtree-1.4.3+dfsg/pll/evaluateGenericSpecial.c [ 7%] Building C object pll/CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o -c /<>/iqtree-1.4.3+dfsg/pll/evaluatePartialGenericSpecial.c /<>/iqtree-1.4.3+dfsg/pll/evaluatePartialGenericSpecial.c:275:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * states * mxtips); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/evaluatePartialGenericSpecial.c:276:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&d, PLL_BYTE_ALIGNMENT, sizeof(double) * states); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ 2 warnings generated. [ 8%] Building C object pll/CMakeFiles/pll.dir/fastDNAparsimony.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/fastDNAparsimony.c.o -c /<>/iqtree-1.4.3+dfsg/pll/fastDNAparsimony.c /<>/iqtree-1.4.3+dfsg/pll/fastDNAparsimony.c:1692:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **) &(pr->partitionData[model]->parsVect), PLL_BYTE_ALIGNMENT, (size_t)compressedEntriesPadded * states * totalNodes * sizeof(parsimonyNumber)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/fastDNAparsimony.c:1768:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **) &(tr->parsimonyScore), PLL_BYTE_ALIGNMENT, sizeof(unsigned int) * totalNodes); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ 2 warnings generated. [ 9%] Building C object pll/CMakeFiles/pll.dir/hardware.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/hardware.c.o -c /<>/iqtree-1.4.3+dfsg/pll/hardware.c /<>/iqtree-1.4.3+dfsg/pll/hardware.c:93:9: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf (fd, "%d", &id); ^~~~~~ ~~~~~~~~~~~~~ 1 warning generated. [ 9%] Building C object pll/CMakeFiles/pll.dir/hash.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/hash.c.o -c /<>/iqtree-1.4.3+dfsg/pll/hash.c [ 10%] Building C object pll/CMakeFiles/pll.dir/lexer.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/lexer.c.o -c /<>/iqtree-1.4.3+dfsg/pll/lexer.c [ 11%] Building C object pll/CMakeFiles/pll.dir/makenewzGenericSpecial.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o -c /<>/iqtree-1.4.3+dfsg/pll/makenewzGenericSpecial.c /<>/iqtree-1.4.3+dfsg/pll/makenewzGenericSpecial.c:768:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **) &dd, PLL_BYTE_ALIGNMENT, states * sizeof(double)), ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/makenewzGenericSpecial.c:765:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **) &d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * states * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/makenewzGenericSpecial.c:766:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **) &e, PLL_BYTE_ALIGNMENT, (states * sizeof(double))); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/makenewzGenericSpecial.c:767:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **) &s, PLL_BYTE_ALIGNMENT, states * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ 4 warnings generated. [ 11%] Building C object pll/CMakeFiles/pll.dir/models.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/models.c.o -c /<>/iqtree-1.4.3+dfsg/pll/models.c [ 12%] Building C object pll/CMakeFiles/pll.dir/newick.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/newick.c.o -c /<>/iqtree-1.4.3+dfsg/pll/newick.c [ 13%] Building C object pll/CMakeFiles/pll.dir/newviewGenericSpecial.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/newviewGenericSpecial.c.o -c /<>/iqtree-1.4.3+dfsg/pll/newviewGenericSpecial.c /<>/iqtree-1.4.3+dfsg/pll/newviewGenericSpecial.c:2763:13: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&x3_start, PLL_BYTE_ALIGNMENT, requiredLength); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/newviewGenericSpecial.c:2792:17: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&ex3, PLL_BYTE_ALIGNMENT, requiredExpLength); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/newviewGenericSpecial.c:3730:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/newviewGenericSpecial.c:3800:3: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof (double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ 4 warnings generated. [ 13%] Building C object pll/CMakeFiles/pll.dir/genericParallelization.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/genericParallelization.c.o -c /<>/iqtree-1.4.3+dfsg/pll/genericParallelization.c [ 14%] Building C object pll/CMakeFiles/pll.dir/optimizeModel.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/optimizeModel.c.o -c /<>/iqtree-1.4.3+dfsg/pll/optimizeModel.c [ 15%] Building C object pll/CMakeFiles/pll.dir/parsePartition.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/parsePartition.c.o -c /<>/iqtree-1.4.3+dfsg/pll/parsePartition.c [ 15%] Building C object pll/CMakeFiles/pll.dir/queue.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/queue.c.o -c /<>/iqtree-1.4.3+dfsg/pll/queue.c [ 16%] Building C object pll/CMakeFiles/pll.dir/randomTree.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/randomTree.c.o -c /<>/iqtree-1.4.3+dfsg/pll/randomTree.c [ 16%] Building C object pll/CMakeFiles/pll.dir/recom.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/recom.c.o -c /<>/iqtree-1.4.3+dfsg/pll/recom.c [ 17%] Building C object pll/CMakeFiles/pll.dir/restartHashTable.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/restartHashTable.c.o -c /<>/iqtree-1.4.3+dfsg/pll/restartHashTable.c [ 18%] Building C object pll/CMakeFiles/pll.dir/searchAlgo.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/searchAlgo.c.o -c /<>/iqtree-1.4.3+dfsg/pll/searchAlgo.c [ 18%] Building C object pll/CMakeFiles/pll.dir/ssort.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/ssort.c.o -c /<>/iqtree-1.4.3+dfsg/pll/ssort.c [ 19%] Building C object pll/CMakeFiles/pll.dir/stack.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/stack.c.o -c /<>/iqtree-1.4.3+dfsg/pll/stack.c [ 20%] Building C object pll/CMakeFiles/pll.dir/topologies.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/topologies.c.o -c /<>/iqtree-1.4.3+dfsg/pll/topologies.c [ 20%] Building C object pll/CMakeFiles/pll.dir/trash.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/trash.c.o -c /<>/iqtree-1.4.3+dfsg/pll/trash.c [ 21%] Building C object pll/CMakeFiles/pll.dir/treeIO.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/treeIO.c.o -c /<>/iqtree-1.4.3+dfsg/pll/treeIO.c [ 22%] Building C object pll/CMakeFiles/pll.dir/utils.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/pll.dir/utils.c.o -c /<>/iqtree-1.4.3+dfsg/pll/utils.c /<>/iqtree-1.4.3+dfsg/pll/utils.c:611:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV_LG4[k]), PLL_BYTE_ALIGNMENT, pl->evLength * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:615:15: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector_LG4[k]), PLL_BYTE_ALIGNMENT, pl->tipVectorLength * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:750:11: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->gapColumn),PLL_BYTE_ALIGNMENT, ((size_t)localTree->mxtips) * ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:590:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->left), PLL_BYTE_ALIGNMENT, (size_t)pl->leftLength * (maxCategories + 1) * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:591:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->right), PLL_BYTE_ALIGNMENT, (size_t)pl->rightLength * (maxCategories + 1) * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:593:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV), PLL_BYTE_ALIGNMENT, (size_t)pl->evLength * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:599:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector), PLL_BYTE_ALIGNMENT, (size_t)pl->tipVectorLength * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:681:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->sumBuffer), PLL_BYTE_ALIGNMENT, width * ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:688:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->perSiteLikelihoods), PLL_BYTE_ALIGNMENT, width * sizeof(double)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:718:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->ancestralBuffer), PLL_BYTE_ALIGNMENT, width * ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/utils.c:738:7: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->wgt), PLL_BYTE_ALIGNMENT, width * sizeof(int)); ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/pll/mem_alloc.h:38:32: note: expanded from macro 'rax_posix_memalign' #define rax_posix_memalign posix_memalign ^~~~~~~~~~~~~~ 11 warnings generated. [ 22%] Linking C static library libpll.a cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cmake -P CMakeFiles/pll.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cmake -E cmake_link_script CMakeFiles/pll.dir/link.txt --verbose=1 /usr/bin/ar qc libpll.a CMakeFiles/pll.dir/alignment.c.o CMakeFiles/pll.dir/bipartitionList.c.o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o CMakeFiles/pll.dir/fastDNAparsimony.c.o CMakeFiles/pll.dir/hardware.c.o CMakeFiles/pll.dir/hash.c.o CMakeFiles/pll.dir/lexer.c.o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o CMakeFiles/pll.dir/models.c.o CMakeFiles/pll.dir/newick.c.o CMakeFiles/pll.dir/newviewGenericSpecial.c.o CMakeFiles/pll.dir/genericParallelization.c.o CMakeFiles/pll.dir/optimizeModel.c.o CMakeFiles/pll.dir/parsePartition.c.o CMakeFiles/pll.dir/queue.c.o CMakeFiles/pll.dir/randomTree.c.o CMakeFiles/pll.dir/recom.c.o CMakeFiles/pll.dir/restartHashTable.c.o CMakeFiles/pll.dir/searchAlgo.c.o CMakeFiles/pll.dir/ssort.c.o CMakeFiles/pll.dir/stack.c.o CMakeFiles/pll.dir/topologies.c.o CMakeFiles/pll.dir/trash.c.o CMakeFiles/pll.dir/treeIO.c.o CMakeFiles/pll.dir/utils.c.o /usr/bin/ranlib libpll.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 22%] Built target pll make -f pll/CMakeFiles/pllavx.dir/build.make pll/CMakeFiles/pllavx.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/pll /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/pll /<>/iqtree-1.4.3+dfsg/build.omp/pll/CMakeFiles/pllavx.dir/DependInfo.cmake --color= Scanning dependencies of target pllavx make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f pll/CMakeFiles/pllavx.dir/build.make pll/CMakeFiles/pllavx.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 23%] Building C object pll/CMakeFiles/pllavx.dir/avxLikelihood.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -D__AVX -mavx -o CMakeFiles/pllavx.dir/avxLikelihood.c.o -c /<>/iqtree-1.4.3+dfsg/pll/avxLikelihood.c [ 24%] Linking C static library libpllavx.a cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cmake -P CMakeFiles/pllavx.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/pll && /usr/bin/cmake -E cmake_link_script CMakeFiles/pllavx.dir/link.txt --verbose=1 /usr/bin/ar qc libpllavx.a CMakeFiles/pllavx.dir/avxLikelihood.c.o /usr/bin/ranlib libpllavx.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 24%] Built target pllavx make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/ncl /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/ncl /<>/iqtree-1.4.3+dfsg/build.omp/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= Scanning dependencies of target ncl make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 25%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsassumptionsblock.cpp [ 25%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsblock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsblock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsblock.cpp [ 26%] Building CXX object ncl/CMakeFiles/ncl.dir/nxscharactersblock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxscharactersblock.cpp /<>/iqtree-1.4.3+dfsg/ncl/nxscharactersblock.cpp:1487:8: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (j < 0) ~ ^ ~ 1 warning generated. [ 26%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdatablock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsdatablock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsdatablock.cpp [ 27%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsdiscretedatum.cpp [ 28%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsdiscretematrix.cpp [ 28%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsdistancedatum.cpp [ 29%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsdistancesblock.cpp [ 30%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsemptyblock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsemptyblock.cpp [ 30%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsexception.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsexception.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsexception.cpp [ 31%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsreader.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsreader.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsreader.cpp [ 32%] Building CXX object ncl/CMakeFiles/ncl.dir/nxssetreader.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxssetreader.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxssetreader.cpp [ 32%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsstring.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxsstring.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxsstring.cpp [ 33%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstaxablock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxstaxablock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxstaxablock.cpp [ 34%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstoken.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxstoken.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxstoken.cpp [ 34%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstreesblock.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/ncl.dir/nxstreesblock.cpp.o -c /<>/iqtree-1.4.3+dfsg/ncl/nxstreesblock.cpp [ 35%] Linking CXX static library libncl.a cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/cmake -P CMakeFiles/ncl.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/ncl && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncl.dir/link.txt --verbose=1 /usr/bin/ar qc libncl.a CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o CMakeFiles/ncl.dir/nxsblock.cpp.o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o CMakeFiles/ncl.dir/nxsdatablock.cpp.o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o CMakeFiles/ncl.dir/nxsexception.cpp.o CMakeFiles/ncl.dir/nxsreader.cpp.o CMakeFiles/ncl.dir/nxssetreader.cpp.o CMakeFiles/ncl.dir/nxsstring.cpp.o CMakeFiles/ncl.dir/nxstaxablock.cpp.o CMakeFiles/ncl.dir/nxstoken.cpp.o CMakeFiles/ncl.dir/nxstreesblock.cpp.o /usr/bin/ranlib libncl.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 35%] Built target ncl make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/lbfgsb /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/lbfgsb /<>/iqtree-1.4.3+dfsg/build.omp/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= Scanning dependencies of target lbfgsb make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 36%] Building CXX object lbfgsb/CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/lbfgsb && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o -c /<>/iqtree-1.4.3+dfsg/lbfgsb/lbfgsb_new.cpp [ 37%] Linking CXX static library liblbfgsb.a cd /<>/iqtree-1.4.3+dfsg/build.omp/lbfgsb && /usr/bin/cmake -P CMakeFiles/lbfgsb.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/lbfgsb && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgsb.dir/link.txt --verbose=1 /usr/bin/ar qc liblbfgsb.a CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o /usr/bin/ranlib liblbfgsb.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 37%] Built target lbfgsb make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/whtest /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/whtest /<>/iqtree-1.4.3+dfsg/build.omp/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= Scanning dependencies of target whtest make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 38%] Building C object whtest/CMakeFiles/whtest.dir/eigen.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/eigen.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/eigen.c /<>/iqtree-1.4.3+dfsg/whtest/eigen.c:67:38: warning: for loop has empty body [-Wempty-body] { int i; for (i=0; i>/iqtree-1.4.3+dfsg/whtest/eigen.c:67:38: note: put the semicolon on a separate line to silence this warning /<>/iqtree-1.4.3+dfsg/whtest/eigen.c:69:40: warning: for loop has empty body [-Wempty-body] { int i; for (i=0; i>/iqtree-1.4.3+dfsg/whtest/eigen.c:69:40: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [ 39%] Building C object whtest/CMakeFiles/whtest.dir/eigen_sym.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/eigen_sym.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/eigen_sym.c [ 39%] Building C object whtest/CMakeFiles/whtest.dir/random.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/random.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/random.c [ 40%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/weisslambda.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/weisslambda.c [ 41%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda_sub.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/weisslambda_sub.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/weisslambda_sub.c [ 41%] Building C object whtest/CMakeFiles/whtest.dir/whtest.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/whtest.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/whtest.c [ 42%] Building C object whtest/CMakeFiles/whtest.dir/whtest_sub.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/whtest.dir/whtest_sub.c.o -c /<>/iqtree-1.4.3+dfsg/whtest/whtest_sub.c /<>/iqtree-1.4.3+dfsg/whtest/whtest_sub.c:205:4: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf ( ifp, "%c", &c ); ^~~~~~ ~~~~~~~~~~~~~ /<>/iqtree-1.4.3+dfsg/whtest/whtest_sub.c:221:4: warning: ignoring return value of function declared with warn_unused_result attribute [-Wunused-result] fscanf ( ifp, "%c", &c ); ^~~~~~ ~~~~~~~~~~~~~ 2 warnings generated. [ 43%] Linking C static library libwhtest.a cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cmake -P CMakeFiles/whtest.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/whtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/whtest.dir/link.txt --verbose=1 /usr/bin/ar qc libwhtest.a CMakeFiles/whtest.dir/eigen.c.o CMakeFiles/whtest.dir/eigen_sym.c.o CMakeFiles/whtest.dir/random.c.o CMakeFiles/whtest.dir/weisslambda.c.o CMakeFiles/whtest.dir/weisslambda_sub.c.o CMakeFiles/whtest.dir/whtest.c.o CMakeFiles/whtest.dir/whtest_sub.c.o /usr/bin/ranlib libwhtest.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 43%] Built target whtest make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/sprng /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/sprng /<>/iqtree-1.4.3+dfsg/build.omp/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= Scanning dependencies of target sprng make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 43%] Building C object sprng/CMakeFiles/sprng.dir/lcg64.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/sprng.dir/lcg64.c.o -c /<>/iqtree-1.4.3+dfsg/sprng/lcg64.c [ 44%] Building C object sprng/CMakeFiles/sprng.dir/makeseed.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/sprng.dir/makeseed.c.o -c /<>/iqtree-1.4.3+dfsg/sprng/makeseed.c [ 44%] Building C object sprng/CMakeFiles/sprng.dir/memory.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/sprng.dir/memory.c.o -c /<>/iqtree-1.4.3+dfsg/sprng/memory.c [ 45%] Building C object sprng/CMakeFiles/sprng.dir/store.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/sprng.dir/store.c.o -c /<>/iqtree-1.4.3+dfsg/sprng/store.c [ 46%] Building C object sprng/CMakeFiles/sprng.dir/primes-lcg64.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/sprng.dir/primes-lcg64.c.o -c /<>/iqtree-1.4.3+dfsg/sprng/primes-lcg64.c [ 46%] Building C object sprng/CMakeFiles/sprng.dir/checkid.c.o cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cc -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse2 -o CMakeFiles/sprng.dir/checkid.c.o -c /<>/iqtree-1.4.3+dfsg/sprng/checkid.c [ 47%] Linking C static library libsprng.a cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cmake -P CMakeFiles/sprng.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/sprng && /usr/bin/cmake -E cmake_link_script CMakeFiles/sprng.dir/link.txt --verbose=1 /usr/bin/ar qc libsprng.a CMakeFiles/sprng.dir/lcg64.c.o CMakeFiles/sprng.dir/makeseed.c.o CMakeFiles/sprng.dir/memory.c.o CMakeFiles/sprng.dir/store.c.o CMakeFiles/sprng.dir/primes-lcg64.c.o CMakeFiles/sprng.dir/checkid.c.o /usr/bin/ranlib libsprng.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 47%] Built target sprng make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/vectorclass /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/vectorclass /<>/iqtree-1.4.3+dfsg/build.omp/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= Scanning dependencies of target vectorclass make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 48%] Building CXX object vectorclass/CMakeFiles/vectorclass.dir/instrset_detect.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/vectorclass && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/vectorclass.dir/instrset_detect.cpp.o -c /<>/iqtree-1.4.3+dfsg/vectorclass/instrset_detect.cpp [ 48%] Linking CXX static library libvectorclass.a cd /<>/iqtree-1.4.3+dfsg/build.omp/vectorclass && /usr/bin/cmake -P CMakeFiles/vectorclass.dir/cmake_clean_target.cmake cd /<>/iqtree-1.4.3+dfsg/build.omp/vectorclass && /usr/bin/cmake -E cmake_link_script CMakeFiles/vectorclass.dir/link.txt --verbose=1 /usr/bin/ar qc libvectorclass.a CMakeFiles/vectorclass.dir/instrset_detect.cpp.o /usr/bin/ranlib libvectorclass.a make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 48%] Built target vectorclass make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' cd /<>/iqtree-1.4.3+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/iqtree-1.4.3+dfsg /<>/iqtree-1.4.3+dfsg/model /<>/iqtree-1.4.3+dfsg/build.omp /<>/iqtree-1.4.3+dfsg/build.omp/model /<>/iqtree-1.4.3+dfsg/build.omp/model/CMakeFiles/model.dir/DependInfo.cmake --color= Scanning dependencies of target model make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/<>/iqtree-1.4.3+dfsg/build.omp' [ 48%] Building CXX object model/CMakeFiles/model.dir/modelgtr.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/model && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/model.dir/modelgtr.cpp.o -c /<>/iqtree-1.4.3+dfsg/model/modelgtr.cpp [ 49%] Building CXX object model/CMakeFiles/model.dir/modelbin.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/model && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/model.dir/modelbin.cpp.o -c /<>/iqtree-1.4.3+dfsg/model/modelbin.cpp [ 50%] Building CXX object model/CMakeFiles/model.dir/modeldna.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/model && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/model.dir/modeldna.cpp.o -c /<>/iqtree-1.4.3+dfsg/model/modeldna.cpp [ 50%] Building CXX object model/CMakeFiles/model.dir/modelfactory.cpp.o cd /<>/iqtree-1.4.3+dfsg/build.omp/model && /usr/bin/c++ -DIQ_TREE -D_USE_PTHREADS -I/<>/iqtree-1.4.3+dfsg -I/<>/iqtree-1.4.3+dfsg/build.omp -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/<>/iqtree-1.4.3+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp=libomp -msse2 -o CMakeFiles/model.dir/modelfactory.cpp.o -c /<>/iqtree-1.4.3+dfsg/model/modelfactory.cpp In file included from /<>/iqtree-1.4.3+dfsg/model/modelfactory.cpp:40: /<>/iqtree-1.4.3+dfsg/timeutil.h:34:10: fatal error: 'omp.h' file not found #include ^ 1 error generated. model/CMakeFiles/model.dir/build.make:137: recipe for target 'model/CMakeFiles/model.dir/modelfactory.cpp.o' failed make[4]: *** [model/CMakeFiles/model.dir/modelfactory.cpp.o] Error 1 make[4]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' CMakeFiles/Makefile2:540: recipe for target 'model/CMakeFiles/model.dir/all' failed make[3]: *** [model/CMakeFiles/model.dir/all] Error 2 make[3]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' Makefile:152: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/<>/iqtree-1.4.3+dfsg/build.omp' dh_auto_build: make -j1 returned exit code 2 debian/rules:28: recipe for target 'dh_auto_build_omp' failed make[1]: *** [dh_auto_build_omp] Error 2 make[1]: Leaving directory '/<>/iqtree-1.4.3+dfsg' debian/rules:12: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T16:26:22Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 49 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 13 Job: iqtree_1.4.3+dfsg-1 Machine Architecture: amd64 Package: iqtree Package-Time: 89 Source-Version: 1.4.3+dfsg-1 Space: 0 Status: failed Version: 1.4.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 2016-08-29T16:26:22Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 89.598029846s DC-Time-Estimation: 89.598029846 versus expected 500 (r/m: 4.580479848266685 ; m: 89.598029846)