DC-Build-Header: rpy2 2.8.2-1 / 2016-08-29 16:36:23 +0000 DC-Task: type:rebuild-binarch-only source:rpy2 version:2.8.2-1 chroot:unstable esttime:393 logfile:/tmp/rpy2_2.8.2-1_unstable_clang3.8.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang rpy2_2.8.2-1' sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on ip-172-31-7-144.eu-central-1.compute.internal +==============================================================================+ | rpy2 2.8.2-1 (amd64) Mon, 29 Aug 2016 16:36:23 +0000 | +==============================================================================+ Package: rpy2 Version: 2.8.2-1 Source Version: 2.8.2-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-b246ecd0-44fd-49f5-ae4d-f1cfb8864866' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.8 + echo 'Install of clang-3.8' Install of clang-3.8 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [209 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en [5451 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0319.00.pdiff [16.7 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2016-08-29-0916.07.pdiff [5442 B] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0319.00.pdiff [13.2 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2016-08-29-0916.07.pdiff [3300 B] Fetched 5755 kB in 3s (1708 kB/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges + apt-get install --yes --no-install-recommends --force-yes clang-3.8 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.8-doc Recommended packages: llvm-3.8-dev python The following NEW packages will be installed: clang-3.8 libbsd0 libclang-common-3.8-dev libclang1-3.8 libedit2 libffi6 libllvm3.8 libobjc-6-dev libobjc4 0 upgraded, 9 newly installed, 0 to remove and 1 not upgraded. Need to get 38.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20150325-1+b1 [85.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libffi6 amd64 3.2.1-4 [20.4 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.8 amd64 1:3.8.1-9 [10.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 6.2.0-1 [110 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.2.0-1 [394 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.8 amd64 1:3.8.1-9 [4188 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.8-dev amd64 1:3.8.1-9 [1477 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.8 amd64 1:3.8.1-9 [21.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.3 MB in 9s (3982 kB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9446 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../1-libedit2_3.1-20150325-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1+b1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../2-libffi6_3.2.1-4_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-4) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../3-libllvm3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../4-libobjc4_6.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (6.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../5-libobjc-6-dev_6.2.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.2.0-1) ... Selecting previously unselected package libclang1-3.8:amd64. Preparing to unpack .../6-libclang1-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking libclang1-3.8:amd64 (1:3.8.1-9) ... Selecting previously unselected package libclang-common-3.8-dev. Preparing to unpack .../7-libclang-common-3.8-dev_1%3a3.8.1-9_amd64.deb ... Unpacking libclang-common-3.8-dev (1:3.8.1-9) ... Selecting previously unselected package clang-3.8. Preparing to unpack .../8-clang-3.8_1%3a3.8.1-9_amd64.deb ... Unpacking clang-3.8 (1:3.8.1-9) ... Setting up libobjc4:amd64 (6.2.0-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up libobjc-6-dev:amd64 (6.2.0-1) ... Setting up libffi6:amd64 (3.2.1-4) ... Setting up libedit2:amd64 (3.1-20150325-1+b1) ... Setting up libllvm3.8:amd64 (1:3.8.1-9) ... Setting up libclang-common-3.8-dev (1:3.8.1-9) ... Setting up libclang1-3.8:amd64 (1:3.8.1-9) ... Setting up clang-3.8 (1:3.8.1-9) ... Processing triggers for libc-bin (2.23-5) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. W: No sandbox user '_apt' on the system, can not drop privileges + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6' + cd /usr/bin + for VERSION in '$VERSIONS' + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.8 g++-4.6 + ln -s clang-3.8 gcc-4.6 + ln -s clang-3.8 cpp-4.6 + ln -s clang-3.8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.8 g++-4.7 + ln -s clang-3.8 gcc-4.7 + ln -s clang-3.8 cpp-4.7 + ln -s clang-3.8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.8 g++-4.8 + ln -s clang-3.8 gcc-4.8 + ln -s clang-3.8 cpp-4.8 + ln -s clang-3.8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.8 g++-4.9 + ln -s clang-3.8 gcc-4.9 + ln -s clang-3.8 cpp-4.9 + ln -s clang-3.8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method + for VERSION in '$VERSIONS' + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.8 g++-5 + ln -s clang-3.8 gcc-5 + ln -s clang-3.8 cpp-5 + ln -s clang-3.8 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in '$VERSIONS' + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.8 g++-6 + ln -s clang-3.8 gcc-6 + ln -s clang-3.8 cpp-6 + ln -s clang-3.8 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + cd - /build/rpy2-Lk2Yi2 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1158 kB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 linux-libc-dev amd64 4.7.2-1 [1158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1158 kB in 0s (70.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9769 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.7.2-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.7.2-1) over (4.6.4-1) ... Setting up linux-libc-dev:amd64 (4.7.2-1) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... Need to get 201 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main rpy2 2.8.2-1 (dsc) [1845 B] Get:2 http://127.0.0.1:9999/debian unstable/main rpy2 2.8.2-1 (tar) [187 kB] Get:3 http://127.0.0.1:9999/debian unstable/main rpy2 2.8.2-1 (diff) [13.0 kB] Fetched 201 kB in 0s (1290 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/rpy2-Lk2Yi2/rpy2-2.8.2' with '<>' I: NOTICE: Log filtering will replace 'build/rpy2-Lk2Yi2' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-garIc0/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-garIc0/apt_archive ./ InRelease Get:2 copy:/<>/resolver-garIc0/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-garIc0/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-garIc0/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-garIc0/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-garIc0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 9775 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), r-base-dev (>= 3.3.1), python-all-dev, python3-all-dev (>= 3.1.2-10~), python-setuptools, python3-setuptools, python-numpy-dev, python3-numpy-dev Filtered Build-Depends: debhelper (>= 9), r-base-dev (>= 3.3.1), python-all-dev, python3-all-dev (>= 3.1.2-10~), python-setuptools, python3-setuptools, python-numpy-dev, python3-numpy-dev dpkg-deb: building package 'sbuild-build-depends-rpy2-dummy' in '/<>/resolver-EV9naL/apt_archive/sbuild-build-depends-rpy2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-rpy2-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-EV9naL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-EV9naL/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-EV9naL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-EV9naL/apt_archive ./ Sources [398 B] Get:5 copy:/<>/resolver-EV9naL/apt_archive ./ Packages [492 B] Fetched 1847 B in 0s (0 B/s) Reading package lists... W: No sandbox user '_apt' on the system, can not drop privileges Reading package lists... Install rpy2 build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0 libgnutls30 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu-dev libicu57 libidn11 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses5-dev libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline-dev libreadline6 libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 lsb-base m4 man-db mime-support openssl po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3.5 python3.5-dev python3.5-minimal r-base-core r-base-dev readline-common tzdata ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc-man liblapack-doc gnutls-bin krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk less www-browser libmail-box-perl python-doc python-tk python-nose python-numpy-dbg python-numpy-doc python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3-nose python3-numpy-dbg python3.5-venv python3.5-doc ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin Recommended packages: curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0 libgnutls30 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu-dev libicu57 libidn11 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses5-dev libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libreadline-dev libreadline6 libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 lsb-base m4 man-db mime-support openssl po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3.5 python3.5-dev python3.5-minimal r-base-core r-base-dev readline-common sbuild-build-depends-rpy2-dummy tzdata ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 195 MB of archives. After this operation, 591 MB of additional disk space will be used. Get:1 copy:/<>/resolver-EV9naL/apt_archive ./ sbuild-build-depends-rpy2-dummy 0.invalid.0 [832 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-8 [1162 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.10 [184 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.5-1 [1003 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.12-2 [387 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.12-2 [1348 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.11-2 [40.3 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.0-1 [82.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 6.3-8 [57.7 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6 amd64 6.3-8+b4 [142 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.14.1-1 [559 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2h-1 [1287 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.12-2 [1875 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.12-2 [277 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.11-2 [19.8 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.11-2 [153 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.24-2 [279 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.6.3-3+b1 [437 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.11.0-6.7 [331 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig amd64 2.11.0-6.7 [403 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20160629 [27.6 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+16 [251 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libpcrecpp0v5 amd64 2:8.39-2 [151 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [26.2 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.11.1-1.1 [45.3 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.3-1 [128 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.3-1 [742 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.9-2 [31.8 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libxft2 amd64 2.3.2-1 [55.4 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.2-3 [568 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-minimal amd64 3.5.2-3 [1644 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.5.1-4 [35.3 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.2-3 [2126 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 python3.5 amd64 3.5.2-3 [214 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.5.1-4 [18.6 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 2.20160818 [83.0 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.5.1-4 [21.6 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1 [30.7 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 tzdata all 2016f-1 [219 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.28-4 [210 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.28-4 [109 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.28-4 [62.9 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-1 [121 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libnettle6 amd64 3.2-1 [191 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libhogweed4 amd64 3.2-1 [136 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-1 [115 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libp11-kit0 amd64 0.23.2-5 [111 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libtasn1-6 amd64 4.9-4 [50.0 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libgnutls30 amd64 3.5.3-3 [801 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.14.3+dfsg-1 [61.0 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.14.3+dfsg-1 [115 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.14.3+dfsg-1 [311 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.14.3+dfsg-1 [154 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [66.9 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [103 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2+b2 [222 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-3 [7676 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-1+b1 [919 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.17-5 [255 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20160430.1 [72.6 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15-4 [735 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-1 [433 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 openssl amd64 1.0.2h-1 [681 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 ca-certificates all 20160104 [200 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 cdbs all 0.4.143 [80.9 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.48.1-3 [2707 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.11-1 [143 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-1 [1493 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.19 [249 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.023-2 [8202 B] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 12 [15.8 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 9.20160814 [800 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.2.0-1 [264 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran-6-dev amd64 6.2.0-1 [295 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 gfortran-6 amd64 6.2.0-1 [31.7 MB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 gfortran amd64 4:6.1.1-1 [1352 B] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-3 [172 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libblas-common amd64 3.6.1-2 [13.9 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.6.1-2 [157 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libblas-dev amd64 3.6.1-2 [18.9 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libbz2-dev amd64 1.0.6-8 [29.0 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.33.6-1 [532 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.11.1-1.1 [17.5 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.11.1-1.1 [11.6 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.14.6-1+b1 [767 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.13.0-1 [79.4 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [60.0 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.7.0-1 [138 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.50.1-1 [280 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libdatrie1 amd64 0.2.10-2 [35.8 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.0-1 [128 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.8-1 [76.4 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.2.7-1+b1 [612 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-3 [16.3 MB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.0-1 [132 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.0-1 [210 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.0-1 [54.8 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.6.1-2 [1963 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 liblapack-dev amd64 3.6.1-2 [1977 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2.1 [255 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libtinfo-dev amd64 6.0+20160625-1 [77.1 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5-dev amd64 6.0+20160625-1 [174 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libthai-data all 0.1.25-1 [165 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libthai0 amd64 0.1.25-1 [51.6 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libpango-1.0-0 amd64 1.40.1-1 [311 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.40.1-1 [236 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.40.1-1 [223 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libpcre16-3 amd64 2:8.39-2 [258 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libpcre32-3 amd64 2:8.39-2 [248 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libpcre3-dev amd64 2:8.39-2 [645 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libpng-dev amd64 1.6.24-2 [247 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.12-2 [1070 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.12-2 [28.1 MB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.11-2 [19.8 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libpython-all-dev amd64 2.7.11-2 [952 B] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5 amd64 3.5.2-3 [1368 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.5-dev amd64 3.5.2-3 [37.6 MB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-dev amd64 3.5.1-4 [18.7 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-all-dev amd64 3.5.1-4 [954 B] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 libreadline6-dev amd64 6.3-8+b4 [123 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 libreadline-dev amd64 6.3-8+b4 [956 B] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1 [984 kB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.6-2 [222 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 libtk8.6 amd64 8.6.6-1 [752 kB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 python-all amd64 2.7.11-2 [938 B] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.12-2 [281 kB] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.11-2 [1128 B] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 python-all-dev amd64 2.7.11-2 [954 B] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 python-numpy amd64 1:1.11.1~rc1-1 [1771 kB] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 python-pkg-resources all 25.2.0-1 [143 kB] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 python-setuptools all 25.2.0-1 [211 kB] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 python3-all amd64 3.5.1-4 [928 B] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 python3.5-dev amd64 3.5.2-3 [413 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 python3-dev amd64 3.5.1-4 [1152 B] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 python3-all-dev amd64 3.5.1-4 [956 B] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 python3-numpy amd64 1:1.11.1~rc1-1 [1772 kB] Get:161 http://127.0.0.1:9999/debian unstable/main amd64 python3-pkg-resources all 25.2.0-1 [114 kB] Get:162 http://127.0.0.1:9999/debian unstable/main amd64 python3-setuptools all 25.2.0-1 [130 kB] Get:163 http://127.0.0.1:9999/debian unstable/main amd64 zip amd64 3.0-11 [229 kB] Get:164 http://127.0.0.1:9999/debian unstable/main amd64 unzip amd64 6.0-20 [161 kB] Get:165 http://127.0.0.1:9999/debian unstable/main amd64 xdg-utils all 1.1.1-1 [71.1 kB] Get:166 http://127.0.0.1:9999/debian unstable/main amd64 r-base-core amd64 3.3.1-1+b1 [21.0 MB] Get:167 http://127.0.0.1:9999/debian unstable/main amd64 r-base-dev all 3.3.1-1 [4306 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 195 MB in 25s (7546 kB/s) Selecting previously unselected package groff-base. 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Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libblas-common (3.6.1-2) ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Aug 29 16:41:22 UTC 2016. Universal Time is now: Mon Aug 29 16:41:22 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgfortran3:amd64 (6.2.0-1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.48.1-3) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libgfortran-6-dev:amd64 (6.2.0-1) ... Setting up unzip (6.0-20) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up libtinfo-dev:amd64 (6.0+20160625-1) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libtiff5:amd64 (4.0.6-2) ... Setting up gettext-base (0.19.8.1-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:amd64 (57.1-3) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1+b1) ... Setting up zip (3.0-11) ... Setting up libfreetype6:amd64 (2.6.3-3+b1) ... Setting up libtasn1-6:amd64 (4.9-4) ... Setting up libmagic-mgc (1:5.28-4) ... Setting up libmagic1:amd64 (1:5.28-4) ... Setting up libhogweed4:amd64 (3.2-1) ... Setting up lsb-base (9.20160629) ... Setting up libgraphite2-3:amd64 (1.3.8-1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up libncurses5-dev:amd64 (6.0+20160625-1) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up libblas3 (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1) ... Processing triggers for libc-bin (2.23-5) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libp11-kit0:amd64 (0.23.2-5) ... Setting up openssl (1.0.2h-1) ... Setting up libsqlite3-0:amd64 (3.14.1-1) ... Setting up libexpat1-dev:amd64 (2.2.0-1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-2) ... Setting up libpcre32-3:amd64 (2:8.39-2) ... Setting up icu-devtools (57.1-3) ... Setting up libpcre16-3:amd64 (2:8.39-2) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1) ... Setting up libthai-data (0.1.25-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up bsdmainutils (9.0.10) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+16) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1) ... Setting up ca-certificates (20160104) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1) ... Setting up libidn11:amd64 (1.33-1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libreadline6:amd64 (6.3-8+b4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libfile-stripnondeterminism-perl (0.023-2) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up gfortran-6 (6.2.0-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpcre3-dev:amd64 (2:8.39-2) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up gettext (0.19.8.1-1) ... Setting up liblapack3 (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.2-3) ... Setting up libgnutls30:amd64 (3.5.3-3) ... Setting up libreadline6-dev:amd64 (6.3-8+b4) ... Setting up libharfbuzz0b:amd64 (1.2.7-1+b1) ... Setting up autoconf (2.69-10) ... Setting up libthai0:amd64 (0.1.25-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up libicu-dev (57.1-3) ... Setting up file (1:5.28-4) ... Setting up libkrb5support0:amd64 (1.14.3+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg-dev (1:1.5.0-1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2+b2) ... Setting up automake (1:1.15-4) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:amd64 (6.3-8+b4) ... Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpng-dev:amd64 (1.6.24-2) ... Setting up libxcb1:amd64 (1.11.1-1.1) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-2) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.2-3) ... Setting up gfortran (4:6.1.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up libfontconfig1:amd64 (2.11.0-6.7) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libk5crypto3:amd64 (1.14.3+dfsg-1) ... Setting up libxcb-render0:amd64 (1.11.1-1.1) ... Setting up po-debconf (1.0.19) ... Setting up libblas-dev (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libpython3.5:amd64 (3.5.2-3) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up python2.7 (2.7.12-2) ... Setting up libpython3.5-dev:amd64 (3.5.2-3) ... Setting up libpython-stdlib:amd64 (2.7.11-2) ... Setting up libpython2.7:amd64 (2.7.12-2) ... Setting up libxcb-shm0:amd64 (1.11.1-1.1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libkrb5-3:amd64 (1.14.3+dfsg-1) ... Setting up libpython2.7-dev:amd64 (2.7.12-2) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up python3.5-dev (3.5.2-3) ... Setting up python2.7-dev (2.7.12-2) ... Setting up python (2.7.11-2) ... Setting up fontconfig (2.11.0-6.7) ... Regenerating fonts cache... done. Setting up libpython3-dev:amd64 (3.5.1-4) ... Setting up liblapack-dev (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libpython-dev:amd64 (2.7.11-2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up python-dev (2.7.11-2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libpython-all-dev:amd64 (2.7.11-2) ... Setting up python-pkg-resources (25.2.0-1) ... Setting up python-numpy (1:1.11.1~rc1-1) ... Setting up libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ... Setting up libpython3-all-dev:amd64 (3.5.1-4) ... Setting up libpango-1.0-0:amd64 (1.40.1-1) ... Setting up python-all (2.7.11-2) ... Setting up libcairo2:amd64 (1.14.6-1+b1) ... Setting up python-setuptools (25.2.0-1) ... Setting up libcurl3:amd64 (7.50.1-1) ... Setting up libtk8.6:amd64 (8.6.6-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ... Setting up python-all-dev (2.7.11-2) ... Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ... Setting up r-base-core (3.3.1-1+b1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.3.1-1) ... Setting up dh-autoreconf (12) ... Setting up python3 (3.5.1-4) ... Setting up python3-numpy (1:1.11.1~rc1-1) ... Setting up python3-dev (3.5.1-4) ... Setting up python3-pkg-resources (25.2.0-1) ... Setting up dh-strip-nondeterminism (0.023-2) ... Setting up python3-all (3.5.1-4) ... Setting up python3-setuptools (25.2.0-1) ... Setting up dh-python (2.20160818) ... Setting up debhelper (9.20160814) ... Setting up python3-all-dev (3.5.1-4) ... Setting up sbuild-build-depends-rpy2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-5) ... Processing triggers for ca-certificates (20160104) ... Updating certificates in /etc/ssl/certs... 173 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. W: No sandbox user '_apt' on the system, can not drop privileges +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.27-6 dpkg-dev_1.18.10 g++-6_6.2.0-1 gcc-6_6.2.0-1 libc6-dev_2.23-5 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 linux-libc-dev_4.7.2-1 Package versions: adduser_3.115 apt_1.3~rc2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6 base-passwd_3.5.40 bash_4.3-15 binutils_2.27-6 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20160104 cdbs_0.4.143 clang-3.8_1:3.8.1-9 coreutils_8.25-2 cpp_4:6.1.1-1 cpp-6_6.2.0-1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debian-archive-keyring_2014.3 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 eatmydata_105-3 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fontconfig_2.11.0-6.7 fontconfig-config_2.11.0-6.7 fonts-dejavu-core_2.37-1 g++_4:6.1.1-1 g++-6_6.2.0-1 gcc_4:6.1.1-1 gcc-6_6.2.0-1 gcc-6-base_6.2.0-1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.2.0-1 gpgv_2.1.14-5 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-3 init-system-helpers_1.42 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapt-pkg5.0_1.3~rc2 libarchive-zip-perl_1.59-1 libasan3_6.2.0-1 libatomic1_6.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28.1-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.23-5 libc-dev-bin_2.23-5 libc6_2.23-5 libc6-dev_2.23-5 libcairo2_1.14.6-1+b1 libcap-ng0_0.7.7-3 libcc1-0_6.2.0-1 libcilkrts5_6.2.0-1 libclang-common-3.8-dev_1:3.8.1-9 libclang1-3.8_1:3.8.1-9 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcurl3_7.50.1-1 libdatrie1_0.2.10-2 libdb5.3_5.3.28-12 libdebconfclient0_0.215 libdpkg-perl_1.18.10 libeatmydata1_105-3 libedit2_3.1-20150325-1+b1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libfontconfig1_2.11.0-6.7 libfreetype6_2.6.3-3+b1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.0-1 libgcc1_1:6.2.0-1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-1 libgfortran3_6.2.0-1 libglib2.0-0_2.48.1-3 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-3 libgomp1_6.2.0-1 libgpg-error0_1.24-1 libgraphite2-3_1.3.8-1 libgssapi-krb5-2_1.14.3+dfsg-1 libharfbuzz0b_1.2.7-1+b1 libhogweed4_3.2-1 libice6_2:1.0.9-1+b1 libicu-dev_57.1-3 libicu57_57.1-3 libidn11_1.33-1 libisl15_0.17.1-1 libitm1_6.2.0-1 libjbig0_2.1-3.1 libjpeg-dev_1:1.5.0-1 libjpeg62-turbo_1:1.5.0-1 libjpeg62-turbo-dev_1:1.5.0-1 libk5crypto3_1.14.3+dfsg-1 libkeyutils1_1.5.9-9 libkrb5-3_1.14.3+dfsg-1 libkrb5support0_1.14.3+dfsg-1 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 libldap-2.4-2_2.4.42+dfsg-2+b2 libllvm3.8_1:3.8.1-9 liblsan0_6.2.0-1 liblz4-1_0.0~r131-2 liblzma-dev_5.1.1alpha+20120614-2.1 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28.1-1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.4-2 libmpx2_6.2.0-1 libncurses5_6.0+20160625-1 libncurses5-dev_6.0+20160625-1 libncursesw5_6.0+20160625-1 libnettle6_3.2-1 libnghttp2-14_1.13.0-1 libobjc-6-dev_6.2.0-1 libobjc4_6.2.0-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpango-1.0-0_1.40.1-1 libpangocairo-1.0-0_1.40.1-1 libpangoft2-1.0-0_1.40.1-1 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng-dev_1.6.24-2 libpng16-16_1.6.24-2 libpython-all-dev_2.7.11-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-2 libpython2.7-dev_2.7.12-2 libpython2.7-minimal_2.7.12-2 libpython2.7-stdlib_2.7.12-2 libpython3-all-dev_3.5.1-4 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-3 libpython3.5-dev_3.5.2-3 libpython3.5-minimal_3.5.2-3 libpython3.5-stdlib_3.5.2-3 libquadmath0_6.2.0-1 libreadline-dev_6.3-8+b4 libreadline6_6.3-8+b4 libreadline6-dev_6.3-8+b4 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsm6_2:1.2.2-1+b1 libsmartcols1_2.28.1-1 libsqlite3-0_3.14.1-1 libss2_1.43.1-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.2.0-1 libstdc++6_6.2.0-1 libsystemd0_231-5 libtasn1-6_4.9-4 libtcl8.6_8.6.6+dfsg-1 libthai-data_0.1.25-1 libthai0_0.1.25-1 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160625-1 libtinfo5_6.0+20160625-1 libtk8.6_8.6.6-1 libtool_2.4.6-2 libtsan0_6.2.0-1 libubsan0_6.2.0-1 libudev1_231-5 libunistring0_0.9.6+really0.9.3-0.1 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1.1 libxcb-shm0_1.11.1-1.1 libxcb1_1.11.1-1.1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.4+dfsg1-1+b1 libxrender1_1:0.9.9-2 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_4.7.2-1 login_1:4.2-3.1 lsb-base_9.20160629 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.1-1 multiarch-support_2.23-5 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 openssl_1.0.2h-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 python_2.7.11-2 python-all_2.7.11-2 python-all-dev_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python-numpy_1:1.11.1~rc1-1 python-pkg-resources_25.2.0-1 python-setuptools_25.2.0-1 python2.7_2.7.12-2 python2.7-dev_2.7.12-2 python2.7-minimal_2.7.12-2 python3_3.5.1-4 python3-all_3.5.1-4 python3-all-dev_3.5.1-4 python3-dev_3.5.1-4 python3-minimal_3.5.1-4 python3-numpy_1:1.11.1~rc1-1 python3-pkg-resources_25.2.0-1 python3-setuptools_25.2.0-1 python3.5_3.5.2-3 python3.5-dev_3.5.2-3 python3.5-minimal_3.5.2-3 r-base-core_3.3.1-1+b1 r-base-dev_3.3.1-1 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rpy2-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016f-1 ucf_3.0036 unzip_6.0-20 util-linux_2.28.1-1 x11-common_1:7.7+16 xdg-utils_1.1.1-1 xz-utils_5.1.1alpha+20120614-2.1 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jul 11 01:06:47 2016 UTC using RSA key ID gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rpy2_2.8.2-1.dsc dpkg-source: info: extracting rpy2 in /<> dpkg-source: info: unpacking rpy2_2.8.2.orig.tar.gz dpkg-source: info: applying rpy2_2.8.2-1.diff.gz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-b246ecd0-44fd-49f5-ae4d-f1cfb8864866 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rpy2 dpkg-buildpackage: info: source version 2.8.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dirk Eddelbuettel dpkg-source --before-build rpy2-2.8.2 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2, --with python3 dh_testdir dh_auto_clean pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py clean -a R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" /usr/lib/R/bin/R CMD config --ldflags /usr/lib/R/bin/R CMD config --cppflags Compilation parameters for rpy2's C components: include_dirs = ['/usr/share/R/include'] library_dirs = ['/usr/lib/R/lib'] libraries = ['R', 'pcre', 'lzma', 'bz2', 'z', 'rt', 'dl', 'm', 'icuuc', 'icui18n'] extra_link_args = ['-Wl,--export-dynamic', '-fopenmp', '-Wl,-z,relro'] running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf /<>/build make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with python2, --with python3 dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch --with python2, --with python3 dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_install -ppython-rpy2 set -e && for i in 2.7; do \ python$i ./setup.py install --install-layout=deb --root /<>/debian/python-rpy2; \ done R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" /usr/lib/R/bin/R CMD config --ldflags /usr/lib/R/bin/R CMD config --cppflags Compilation parameters for rpy2's C components: include_dirs = ['/usr/share/R/include'] library_dirs = ['/usr/lib/R/lib'] libraries = ['R', 'pcre', 'lzma', 'bz2', 'z', 'rt', 'dl', 'm', 'icuuc', 'icui18n'] extra_link_args = ['-Wl,--export-dynamic', '-fopenmp', '-Wl,-z,relro'] running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/rpy_classic.py -> build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/tests.py -> build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/__init__.py -> build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/tests_rpy_classic.py -> build/lib.linux-x86_64-2.7/rpy2 creating build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/indexing.py -> build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/functional.py -> build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/container.py -> build/lib.linux-x86_64-2.7/rpy2/rlike creating build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_container.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_functional.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_indexing.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests creating build/lib.linux-x86_64-2.7/rpy2/rinterface copying ./rpy/rinterface/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface creating build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Device.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests creating build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/packages_utils.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/vectors.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/numpy2ri.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/robject.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/pandas2ri.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/constants.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/environments.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/help.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/methods.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/functions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/conversion.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/packages.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/language.py -> build/lib.linux-x86_64-2.7/rpy2/robjects creating build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testLanguage.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testVector.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testRObject.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testFormula.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testHelp.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testRobjects.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testMethods.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testArray.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testPackages.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testFunction.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests creating build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/ggplot2.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/grdevices.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/tidyr.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/grid.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/dplyr.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib creating build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_dplyr.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_grdevices.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests creating build/lib.linux-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/process_revents.py -> build/lib.linux-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/packages.py -> build/lib.linux-x86_64-2.7/rpy2/interactive creating build/lib.linux-x86_64-2.7/rpy2/interactive/tests copying ./rpy/interactive/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/interactive/tests creating build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/rmagic.py -> build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/ggplot.py -> build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/html.py -> build/lib.linux-x86_64-2.7/rpy2/ipython creating build/lib.linux-x86_64-2.7/rpy2/ipython/tests copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.linux-x86_64-2.7/rpy2/ipython/tests copying ./rpy/ipython/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/ipython/tests running build_clib building 'r_utils' library creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/rpy creating build/temp.linux-x86_64-2.7/rpy/rinterface x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./rpy/rinterface -I/usr/share/R/include -c ./rpy/rinterface/r_utils.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/r_utils.o x86_64-linux-gnu-gcc-ar rc build/temp.linux-x86_64-2.7/libr_utils.a build/temp.linux-x86_64-2.7/./rpy/rinterface/r_utils.o running build_ext R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" building 'rpy2.rinterface._rinterface' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/usr/share/R/include -I/usr/include/python2.7 -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o In file included from ./rpy/rinterface/_rinterface.c:98: ./rpy/rinterface/embeddedr.h:6:27: warning: duplicate 'const' declaration specifier [-Wduplicate-decl-specifier] extern const unsigned int const RPY_R_INITIALIZED; ^ ./rpy/rinterface/embeddedr.h:7:27: warning: duplicate 'const' declaration specifier [-Wduplicate-decl-specifier] extern const unsigned int const RPY_R_BUSY; ^ In file included from ./rpy/rinterface/_rinterface.c:116: ./rpy/rinterface/embeddedr.c:5:20: warning: duplicate 'const' declaration specifier [-Wduplicate-decl-specifier] const unsigned int const RPY_R_INITIALIZED = 0x01; ^ ./rpy/rinterface/embeddedr.c:6:20: warning: duplicate 'const' declaration specifier [-Wduplicate-decl-specifier] const unsigned int const RPY_R_BUSY = 0x02; ^ ./rpy/rinterface/embeddedr.c:48:12: warning: unused variable 'res' [-Wunused-variable] SEXP res = rpy2_remove(Rf_mkString(name_buf), ^ In file included from ./rpy/rinterface/_rinterface.c:119: ./rpy/rinterface/sexp.c:742:13: warning: unused variable 'copy' [-Wunused-variable] PyObject *copy = Py_True; ^ ./rpy/rinterface/_rinterface.c:347:3: warning: variable 'consolecallback' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized] default: ^~~~~~~ ./rpy/rinterface/_rinterface.c:373:7: note: uninitialized use occurs here if (consolecallback == NULL) { ^~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:339:24: note: initialize the variable 'consolecallback' to silence this warning void *consolecallback; ^ = NULL In file included from ./rpy/rinterface/_rinterface.c:52: ./rpy/rinterface/_rinterface.h:203:44: warning: unused function 'PyRinterface_IsInitialized' [-Wunused-function] static PyRinterface_IsInitialized_RETURN PyRinterface_IsInitialized PyRinterface_IsInitialized_PROTO; ^ ./rpy/rinterface/_rinterface.h:204:38: warning: unused function 'PyRinterface_FindFun' [-Wunused-function] static PyRinterface_FindFun_RETURN PyRinterface_FindFun PyRinterface_FindFun_PROTO; ^ In file included from ./rpy/rinterface/_rinterface.c:122: ./rpy/rinterface/sequence.c:2168:1: warning: unused function 'ComplexVectorSexp_AsSexp' [-Wunused-function] ComplexVectorSexp_AsSexp(PyObject *pyfloat) { ^ 10 warnings generated. x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-oH9M6v/python2.7-2.7.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o -L/usr/lib/R/lib -Lbuild/temp.linux-x86_64-2.7 -Wl,-R/usr/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -lr_utils -o build/lib.linux-x86_64-2.7/rpy2/rinterface/_rinterface.so -Wl,--export-dynamic -fopenmp -Wl,-z,relro /usr/bin/x86_64-linux-gnu-ld: cannot find -lomp clang: error: linker command failed with exit code 1 (use -v to see invocation) error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 debian/rules:25: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 1 make[1]: Leaving directory '/<>' debian/rules:20: recipe for target 'binary-arch' failed make: *** [binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2016-08-29T16:41:35Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 0 Build-Time: 3 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 193 Job: rpy2_2.8.2-1 Machine Architecture: amd64 Package: rpy2 Package-Time: 312 Source-Version: 2.8.2-1 Space: 0 Status: failed Version: 2.8.2-1 -------------------------------------------------------------------------------- Finished at 2016-08-29T16:41:35Z Build needed 00:00:00, 0k disc space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 313.096704635s