DC-Build-Header: hilive 0.3-2 / 2017-07-06 15:44:09 +0000 DC-Task: type:rebuild-binarch-only source:hilive version:0.3-2 chroot:unstable esttime: logfile:/tmp/hilive_0.3-2_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang hilive_0.3-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-35-127.eu-central-1.compute.internal +==============================================================================+ | hilive 0.3-2 (amd64) Thu, 06 Jul 2017 15:44:09 +0000 | +==============================================================================+ Package: hilive Version: 0.3-2 Source Version: 0.3-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-bc82591a-a884-4155-8d52-fce3d55627af' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3965 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.9-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 251 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.9 amd64 1:3.9.1-10 [11.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.9 amd64 1:3.9.1-10 [5875 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.9-dev amd64 1:3.9.1-10 [2573 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.9 amd64 1:3.9.1-10 [37.4 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 0s (95.5 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9711 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.5-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../1-libncurses5_6.0+20161126-1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../3-libllvm3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libclang1-3.9:amd64. Preparing to unpack .../4-libclang1-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libclang1-3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-3.9-dev. Preparing to unpack .../8-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../9-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/hilive-1mu7Rz + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hilive' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/hilive.git Please use: git clone https://anonscm.debian.org/git/debian-med/hilive.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 43.4 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main hilive 0.3-2 (dsc) [2061 B] Get:2 http://127.0.0.1:9999/debian unstable/main hilive 0.3-2 (tar) [36.2 kB] Get:3 http://127.0.0.1:9999/debian unstable/main hilive 0.3-2 (diff) [5216 B] Fetched 43.4 kB in 0s (357 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hilive-1mu7Rz/hilive-0.3' with '<>' I: NOTICE: Log filtering will replace 'build/hilive-1mu7Rz' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-3o8CUw/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-3o8CUw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3o8CUw/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-3o8CUw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3o8CUw/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-3o8CUw/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 782 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-3o8CUw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [782 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 782 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath Filtered Build-Depends: debhelper (>= 10), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath dpkg-deb: building package 'sbuild-build-depends-hilive-dummy' in '/<>/resolver-3o8CUw/apt_archive/sbuild-build-depends-hilive-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-hilive-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-3o8CUw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3o8CUw/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-3o8CUw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3o8CUw/apt_archive ./ Sources [552 B] Get:5 copy:/<>/resolver-3o8CUw/apt_archive ./ Packages [628 B] Fetched 2143 B in 0s (0 B/s) Reading package lists... Reading package lists... Install hilive build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost1.62-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev libhts2 libicu57 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblz4-dev liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh2-1 libssl1.0.2 libssl1.1 libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db po-debconf procps zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost1.62-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev libhts2 libicu57 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblz4-dev liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh2-1 libssl1.0.2 libssl1.1 libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db po-debconf procps sbuild-build-depends-hilive-dummy zlib1g-dev 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 38.8 MB of archives. After this operation, 238 MB of additional disk space will be used. Get:1 copy:/<>/resolver-3o8CUw/apt_archive ./ sbuild-build-depends-hilive-dummy 0.invalid.0 [842 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.7.2-1 [1216 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.12-3 [58.1 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.12-3 [249 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.2-2 [294 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.15-1 [61.7 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.15-1 [119 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.15-1 [311 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.15-1 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3 [68.2 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3 [105 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.44+dfsg-7 [85.2 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-7 [219 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.24.0-1 [81.6 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.17.0-4+b1 [43.0 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2l-2 [1294 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.52.1-5 [291 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libuv1 amd64 1.9.1-3 [84.4 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.7.2-1 [3038 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-3 [1342 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4+b1 [32.7 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4+b1 [63.6 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62-dev amd64 1.62.0+dfsg-4+b1 [34.2 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62-dev amd64 1.62.0+dfsg-4+b1 [73.2 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem-dev amd64 1.62.0.1 [3448 B] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4+b1 [160 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62-dev amd64 1.62.0+dfsg-4+b1 [184 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options-dev amd64 1.62.0.1 [3430 B] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system-dev amd64 1.62.0.1 [3554 B] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3-gnutls amd64 7.52.1-5 [289 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libhts2 amd64 1.4.1-2 [294 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libhts-dev amd64 1.4.1-2 [398 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 liblz4-dev amd64 0.0~r131-2+b1 [41.3 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libseqan2-dev all 2.3.1+dfsg-5 [1172 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.8 MB in 0s (72.9 MB/s) Selecting previously unselected package groff-base. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../04-cmake-data_3.7.2-1_all.deb ... Unpacking cmake-data (3.7.2-1) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../05-libprocps6_2%3a3.3.12-3_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3) ... Selecting previously unselected package lsb-base. 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Preparing to unpack .../68-libseqan2-dev_2.3.1+dfsg-5_all.deb ... Unpacking libseqan2-dev (2.3.1+dfsg-5) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../69-zlib1g-dev_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Selecting previously unselected package sbuild-build-depends-hilive-dummy. Preparing to unpack .../70-sbuild-build-depends-hilive-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-hilive-dummy (0.invalid.0) ... Setting up chrpath (0.16-2+b1) ... Setting up libexpat1:amd64 (2.2.1-3) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libnghttp2-14:amd64 (1.24.0-1) ... Setting up libboost1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libseqan2-dev (2.3.1+dfsg-5) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up libldap-common (2.4.44+dfsg-7) ... Setting up libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libuv1:amd64 (1.9.1-3) ... Setting up libpsl5:amd64 (0.17.0-4+b1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.52.3-1) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up libboost-program-options1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up gettext-base (0.19.8.1-2+b1) ... Setting up cmake-data (3.7.2-1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up libprocps6:amd64 (2:3.3.12-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:amd64 (1:5.30-1) ... Setting up lsb-base (9.20161125) ... Setting up procps (2:3.3.12-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libssl1.0.2:amd64 (1.0.2l-2) ... Setting up libssh2-1:amd64 (1.8.0-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up autotools-dev (20161112.1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-7) ... Setting up libssl1.1:amd64 (1.1.0f-3) ... Setting up liblz4-dev:amd64 (0.0~r131-2+b1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-2) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libboost-program-options-dev:amd64 (1.62.0.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libarchive13:amd64 (3.2.2-2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up libkrb5support0:amd64 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-system1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up libk5crypto3:amd64 (1.15-1) ... Setting up libboost-filesystem1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up po-debconf (1.0.20) ... Setting up libboost-system-dev:amd64 (1.62.0.1) ... Setting up libboost-filesystem-dev:amd64 (1.62.0.1) ... Setting up libkrb5-3:amd64 (1.15-1) ... 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Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 chrpath_0.16-2+b1 clang-3.9_1:3.9.1-10 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 eatmydata_105-5 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-2 g++_4:6.3.0-4d1 g++-6_6.4.0-1 gcc_4:6.3.0-4d1 gcc-6_6.4.0-1 gcc-6-base_6.4.0-1 gcc-7-base_7.1.0-9 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.18-8 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.48 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan3_6.4.0-1 libatomic1_7.1.0-9 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-1 libboost-filesystem-dev_1.62.0.1 libboost-filesystem1.62-dev_1.62.0+dfsg-4+b1 libboost-filesystem1.62.0_1.62.0+dfsg-4+b1 libboost-program-options-dev_1.62.0.1 libboost-program-options1.62-dev_1.62.0+dfsg-4+b1 libboost-program-options1.62.0_1.62.0+dfsg-4+b1 libboost-system-dev_1.62.0.1 libboost-system1.62-dev_1.62.0+dfsg-4+b1 libboost-system1.62.0_1.62.0+dfsg-4+b1 libboost1.62-dev_1.62.0+dfsg-4+b1 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-9 libcilkrts5_7.1.0-9 libclang-common-3.9-dev_1:3.9.1-10 libclang1-3.9_1:3.9.1-10 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcurl3_7.52.1-5 libcurl3-gnutls_7.52.1-5 libdb5.3_5.3.28-12+b1 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libexpat1_2.2.1-3 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-1 libgcc1_1:7.1.0-9 libgcrypt20_1.7.8-1 libgdbm3_1.8.3-14 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.13-2 libgomp1_7.1.0-9 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15-1 libhogweed4_3.3-1+b1 libhts-dev_1.4.1-2 libhts2_1.4.1-2 libicu57_57.1-6 libidn2-0_0.16-1+b1 libisl15_0.18-1 libitm1_7.1.0-9 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libldap-2.4-2_2.4.44+dfsg-7 libldap-common_2.4.44+dfsg-7 libllvm3.9_1:3.9.1-10 liblsan0_7.1.0-9 liblz4-1_0.0~r131-2+b1 liblz4-dev_0.0~r131-2+b1 liblzma5_5.2.2-1.2+b1 liblzo2-2_2.08-1.2+b2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libnghttp2-14_1.24.0-1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libprocps6_2:3.3.12-3 libpsl5_0.17.0-4+b1 libquadmath0_7.1.0-9 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libseqan2-dev_2.3.1+dfsg-5 libsigsegv2_2.11-1 libsmartcols1_2.29.2-1 libss2_1.43.4-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 po-debconf_1.0.20 procps_2:3.3.12-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hilive-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 util-linux_2.29.2-1 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Jan 28 06:24:17 2017 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hilive_0.3-2.dsc dpkg-source: info: extracting hilive in /<> dpkg-source: info: unpacking hilive_0.3.orig.tar.gz dpkg-source: info: unpacking hilive_0.3-2.debian.tar.xz dpkg-source: info: applying do_not_set_rpath.patch dpkg-source: info: applying use_FindSeQan.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-bc82591a-a884-4155-8d52-fce3d55627af SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hilive dpkg-buildpackage: info: source version 0.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build hilive-0.3 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -- The C compiler identification is Clang 3.9.1 -- The CXX compiler identification is Clang 3.9.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Failed -- Performing Test CXX14_FLAG -- Performing Test CXX14_FLAG - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /usr/include (found version "2.3.1") -- Boost version: 1.62.0 -- Found the following Boost libraries: -- system -- filesystem -- program_options -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") sam_view.c:39:1: warning: unused function 'kh_clear_rg' [-Wunused-function] KHASH_SET_INIT_STR(rg) ^ htslib-1.2.1/htslib/khash.h:609:2: note: expanded from macro 'KHASH_SET_INIT_STR' KHASH_INIT(name, kh_cstr_t, char, 0, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :161:1: note: expanded from here kh_clear_rg ^ sam_view.c:39:1: warning: unused function 'kh_del_rg' [-Wunused-function] htslib-1.2.1/htslib/khash.h:609:2: note: expanded from macro 'KHASH_SET_INIT_STR' KHASH_INIT(name, kh_cstr_t, char, 0, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :175:1: note: expanded from here kh_del_rg ^ 2 warnings generated. bam_sort.c:59:1: warning: unused function 'kh_clear_c2c' [-Wunused-function] KHASH_INIT(c2c, char*, char*, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :110:1: note: expanded from here kh_clear_c2c ^ bam_sort.c:59:1: warning: unused function 'kh_del_c2c' [-Wunused-function] htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :124:1: note: expanded from here kh_del_c2c ^ bam_sort.c:60:1: warning: unused function 'kh_clear_c2i' [-Wunused-function] KHASH_MAP_INIT_STR(c2i, int) ^ htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :141:1: note: expanded from here kh_clear_c2i ^ bam_sort.c:60:1: warning: unused function 'kh_del_c2i' [-Wunused-function] htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :155:1: note: expanded from here kh_del_c2i ^ bam_sort.c:63:1: warning: unused function 'kl_shift_hdrln' [-Wunused-function] KLIST_INIT(hdrln, char*, __free_char) ^ htslib-1.2.1/htslib/klist.h:99:20: note: expanded from macro 'KLIST_INIT' static inline int kl_shift_##name(kl_##name##_t *kl, kltype_t *d) { \ ^ :205:1: note: expanded from here kl_shift_hdrln ^ 5 warnings generated. bedidx.c:41:1: warning: unused function 'ks_getc' [-Wunused-function] KSTREAM_INIT(gzFile, gzread, 8192) ^ htslib-1.2.1/htslib/kseq.h:154:49: note: expanded from macro 'KSTREAM_INIT' #define KSTREAM_INIT(type_t, __read, __bufsize) KSTREAM_INIT2(static, type_t, __read, __bufsize) ^ htslib-1.2.1/htslib/kseq.h:152:2: note: expanded from macro 'KSTREAM_INIT2' __KS_INLINED(__read) ^ htslib-1.2.1/htslib/kseq.h:68:20: note: expanded from macro '__KS_INLINED' static inline int ks_getc(kstream_t *ks) \ ^ bedidx.c:50:1: warning: unused function 'kh_clear_reg' [-Wunused-function] KHASH_MAP_INIT_STR(reg, bed_reglist_t) ^ htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :102:1: note: expanded from here kh_clear_reg ^ bedidx.c:50:1: warning: unused function 'kh_del_reg' [-Wunused-function] htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :116:1: note: expanded from here kh_del_reg ^ 3 warnings generated. bam_rmdup.c:37:1: warning: unused function 'kh_get_pos' [-Wunused-function] KHASH_MAP_INIT_INT64(pos, bam1_p) ^ htslib-1.2.1/htslib/khash.h:601:2: note: expanded from macro 'KHASH_MAP_INIT_INT64' KHASH_INIT(name, khint64_t, khval_t, 1, kh_int64_hash_func, kh_int64_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:222:16: note: expanded from macro '__KHASH_IMPL' SCOPE khint_t kh_get_##name(const kh_##name##_t *h, khkey_t key) \ ^ :131:1: note: expanded from here kh_get_pos ^ bam_rmdup.c:37:1: warning: unused function 'kh_del_pos' [-Wunused-function] htslib-1.2.1/htslib/khash.h:601:2: note: expanded from macro 'KHASH_MAP_INIT_INT64' KHASH_INIT(name, khint64_t, khval_t, 1, kh_int64_hash_func, kh_int64_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :142:1: note: expanded from here kh_del_pos ^ bam_rmdup.c:45:1: warning: unused function 'kh_clear_lib' [-Wunused-function] KHASH_MAP_INIT_STR(lib, lib_aux_t) ^ htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :161:1: note: expanded from here kh_clear_lib ^ bam_rmdup.c:45:1: warning: unused function 'kh_del_lib' [-Wunused-function] htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :175:1: note: expanded from here kh_del_lib ^ 4 warnings generated. bam_rmdupse.c:43:1: warning: unused function 'kh_clear_best' [-Wunused-function] KHASH_MAP_INIT_INT(best, elem_p) ^ htslib-1.2.1/htslib/khash.h:586:2: note: expanded from macro 'KHASH_MAP_INIT_INT' KHASH_INIT(name, khint32_t, khval_t, 1, kh_int_hash_func, kh_int_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :207:1: note: expanded from here kh_clear_best ^ bam_rmdupse.c:43:1: warning: unused function 'kh_get_best' [-Wunused-function] htslib-1.2.1/htslib/khash.h:586:2: note: expanded from macro 'KHASH_MAP_INIT_INT' KHASH_INIT(name, khint32_t, khval_t, 1, kh_int_hash_func, kh_int_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:222:16: note: expanded from macro '__KHASH_IMPL' SCOPE khint_t kh_get_##name(const kh_##name##_t *h, khkey_t key) \ ^ :210:1: note: expanded from here kh_get_best ^ bam_rmdupse.c:50:1: warning: unused function 'kh_clear_lib' [-Wunused-function] KHASH_MAP_INIT_STR(lib, lib_aux_t) ^ htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :240:1: note: expanded from here kh_clear_lib ^ bam_rmdupse.c:50:1: warning: unused function 'kh_del_lib' [-Wunused-function] htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :254:1: note: expanded from here kh_del_lib ^ 4 warnings generated. bam2bcf_indel.c:33:1: warning: unused function 'kh_clear_rg' [-Wunused-function] KHASH_SET_INIT_STR(rg) ^ htslib-1.2.1/htslib/khash.h:609:2: note: expanded from macro 'KHASH_SET_INIT_STR' KHASH_INIT(name, kh_cstr_t, char, 0, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :80:1: note: expanded from here kh_clear_rg ^ bam2bcf_indel.c:33:1: warning: unused function 'kh_del_rg' [-Wunused-function] htslib-1.2.1/htslib/khash.h:609:2: note: expanded from macro 'KHASH_SET_INIT_STR' KHASH_INIT(name, kh_cstr_t, char, 0, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :94:1: note: expanded from here kh_del_rg ^ 2 warnings generated. sample.c:30:1: warning: unused function 'kh_clear_sm' [-Wunused-function] KHASH_MAP_INIT_STR(sm, int) ^ htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :75:1: note: expanded from here kh_clear_sm ^ sample.c:30:1: warning: unused function 'kh_del_sm' [-Wunused-function] htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :89:1: note: expanded from here kh_del_sm ^ 2 warnings generated. phase.c:72:1: warning: unused function 'kh_clear_set64' [-Wunused-function] KHASH_SET_INIT_INT64(set64) ^ htslib-1.2.1/htslib/khash.h:593:2: note: expanded from macro 'KHASH_SET_INIT_INT64' KHASH_INIT(name, khint64_t, char, 0, kh_int64_hash_func, kh_int64_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :160:1: note: expanded from here kh_clear_set64 ^ phase.c:72:1: warning: unused function 'kh_del_set64' [-Wunused-function] htslib-1.2.1/htslib/khash.h:593:2: note: expanded from macro 'KHASH_SET_INIT_INT64' KHASH_INIT(name, khint64_t, char, 0, kh_int64_hash_func, kh_int64_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :174:1: note: expanded from here kh_del_set64 ^ phase.c:73:1: warning: unused function 'kh_clear_64' [-Wunused-function] KHASH_MAP_INIT_INT64(64, frag_t) ^ htslib-1.2.1/htslib/khash.h:601:2: note: expanded from macro 'KHASH_MAP_INIT_INT64' KHASH_INIT(name, khint64_t, khval_t, 1, kh_int64_hash_func, kh_int64_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :191:1: note: expanded from here kh_clear_64 ^ 3 warnings generated. bedcov.c:36:1: warning: unused function 'ks_getc' [-Wunused-function] KSTREAM_INIT(gzFile, gzread, 16384) ^ htslib-1.2.1/htslib/kseq.h:154:49: note: expanded from macro 'KSTREAM_INIT' #define KSTREAM_INIT(type_t, __read, __bufsize) KSTREAM_INIT2(static, type_t, __read, __bufsize) ^ htslib-1.2.1/htslib/kseq.h:152:2: note: expanded from macro 'KSTREAM_INIT2' __KS_INLINED(__read) ^ htslib-1.2.1/htslib/kseq.h:68:20: note: expanded from macro '__KS_INLINED' static inline int ks_getc(kstream_t *ks) \ ^ 1 warning generated. bam_split.c:37:1: warning: unused function 'kh_clear_c2i' [-Wunused-function] KHASH_MAP_INIT_STR(c2i, int) ^ htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:215:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_clear_##name(kh_##name##_t *h) \ ^ :102:1: note: expanded from here kh_clear_c2i ^ bam_split.c:37:1: warning: unused function 'kh_del_c2i' [-Wunused-function] htslib-1.2.1/htslib/khash.h:617:2: note: expanded from macro 'KHASH_MAP_INIT_STR' KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal) ^ htslib-1.2.1/htslib/khash.h:358:2: note: expanded from macro 'KHASH_INIT' KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:355:2: note: expanded from macro 'KHASH_INIT2' __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) ^ htslib-1.2.1/htslib/khash.h:341:13: note: expanded from macro '__KHASH_IMPL' SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \ ^ :116:1: note: expanded from here kh_del_c2i ^ 2 warnings generated. bam_tview_curses.c:30:10: fatal error: 'curses.h' file not found #include ^ 1 error generated. Makefile:116: recipe for target 'bam_tview_curses.o' failed make[1]: *** [bam_tview_curses.o] Error 1 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -a make -j16 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/HiLiveLibs.dir/build.make CMakeFiles/HiLiveLibs.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/HiLiveLibs.dir/DependInfo.cmake --color= Scanning dependencies of target HiLiveLibs make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/HiLiveLibs.dir/build.make CMakeFiles/HiLiveLibs.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 8%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o [ 16%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o -c /<>/lib/tools.cpp [ 25%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o -c /<>/lib/alnread.cpp /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o -c /<>/lib/alnstream.cpp [ 33%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o [ 41%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o [ 50%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o -c /<>/lib/illumina_parsers.cpp /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o -c /<>/lib/kindex.cpp /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o -c /<>/lib/parallel.cpp [ 58%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o /usr/bin/c++ -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/obj-x86_64-linux-gnu -I/usr/local/lib -I/<>/obj-x86_64-linux-gnu/samtools-1.2 -I/<>/obj-x86_64-linux-gnu/samtools-1.2/htslib-1.2.1 -I/<>/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o -c /<>/lib/argument_parser.cpp In file included from /<>/lib/parallel.cpp:1: In file included from /<>/lib/parallel.h:5: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/alnread.cpp:1: In file included from /<>/lib/alnread.h:5: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/parallel.cpp:1: In file included from /<>/lib/parallel.h:6: In file included from /<>/lib/tools.h:6: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/alnread.cpp:1: In file included from /<>/lib/alnread.h:6: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/kindex.cpp:1: In file included from /<>/lib/kindex.h:5: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/illumina_parsers.cpp:1: In file included from /<>/lib/illumina_parsers.h:5: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/kindex.cpp:1: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/illumina_parsers.cpp:1: In file included from /<>/lib/illumina_parsers.h:6: In file included from /<>/lib/tools.h:6: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/tools.cpp:1: In file included from /<>/lib/tools.h:5: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/alnstream.cpp:1: In file included from /<>/lib/alnstream.h:5: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ /<>/lib/kindex.cpp:135:19: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union assert(kmer < db.size()); ~~^~~~~ /usr/include/assert.h:89:5: note: expanded from macro 'assert' ((expr) \ ^~~~ /<>/lib/kindex.cpp:140:5: error: subscripted value is not an array, pointer, or vector db[kmer].push_back(gp); ~~^~~~~ /<>/lib/kindex.cpp:153:20: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) ~~^~~~~~ /<>/lib/kindex.cpp:153:38: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) ~~^~~~ /<>/lib/kindex.cpp:165:20: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) ~~^~~~~~ /<>/lib/kindex.cpp:165:38: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) ~~^~~~ /<>/lib/kindex.cpp:190:20: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~~~ /<>/lib/kindex.cpp:190:38: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~ /<>/lib/kindex.cpp:228:20: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~~~ /<>/lib/kindex.cpp:228:38: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~ In file included from /<>/lib/tools.cpp:1: In file included from /<>/lib/tools.h:6: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ /<>/lib/kindex.cpp:306:5: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete tmp; ^ [] /<>/lib/kindex.cpp:302:18: note: allocated with 'new[]' here char * tmp = new char[nm_length+1]; ^ In file included from /<>/lib/alnstream.cpp:1: In file included from /<>/lib/alnstream.h:6: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ /<>/lib/kindex.cpp:318:20: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~~~ /<>/lib/kindex.cpp:318:38: error: member reference base type 'KmerIndexType' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~ /<>/lib/kindex.cpp:411:5: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete tmp; ^ [] /<>/lib/kindex.cpp:407:18: note: allocated with 'new[]' here char * tmp = new char[nm_length+1]; ^ /<>/lib/kindex.cpp:425:20: error: member reference base type 'KixRunDB' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~~~ /<>/lib/kindex.cpp:425:38: error: member reference base type 'KixRunDB' (aka 'int') is not a structure or union for (auto it = db.begin(); it != db.end(); ++it) { ~~^~~~ /<>/lib/kindex.cpp:462:23: error: subscripted value is not an array, pointer, or vector char* fwd_begin = db[fwHashValue]; ~~^~~~~~~~~~~~ /<>/lib/kindex.cpp:465:23: error: subscripted value is not an array, pointer, or vector char* rev_begin = db[rcHashValue]; ~~^~~~~~~~~~~~ 2 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:137: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... 2 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:65: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o] Error 1 2 warnings and 18 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:161: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o] Error 1 2 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:185: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o] Error 1 In file included from /<>/lib/argument_parser.cpp:1: In file included from /<>/lib/argument_parser.h:4: /<>/lib/definitions.h:70:38: error: non-type template argument is not a constant expression typedef std::array KmerIndexType; ^~~~~~ /<>/lib/definitions.h:70:38: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ In file included from /<>/lib/argument_parser.cpp:1: In file included from /<>/lib/argument_parser.h:5: /<>/lib/kindex.h:59:26: error: non-type template argument is not a constant expression typedef std::array KixRunDB; ^~~~~~ /<>/lib/kindex.h:59:26: note: initializer of 'n_kmer' is not a constant expression /<>/lib/definitions.h:69:20: note: declared here const HashIntoType n_kmer = pow(4,K_HiLive); ^ /<>/lib/alnstream.cpp:293:7: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete tmp; ^ [] /<>/lib/alnstream.cpp:289:20: note: allocated with 'new[]' here char * tmp = new char[root_size+1]; ^ /<>/lib/alnstream.cpp:315:7: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete tmp; ^ [] /<>/lib/alnstream.cpp:311:20: note: allocated with 'new[]' here char * tmp = new char[root_size+1]; ^ 2 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:89: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o] Error 1 2 warnings and 2 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:113: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o] Error 1 2 errors generated. CMakeFiles/HiLiveLibs.dir/build.make:209: recipe for target 'CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o' failed make[3]: *** [CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o] Error 1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/HiLiveLibs.dir/all' failed make[2]: *** [CMakeFiles/HiLiveLibs.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Makefile:86: recipe for target 'all' failed make[1]: *** [all] Error 2 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_build: make -j16 returned exit code 2 debian/rules:10: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T15:44:51Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 23864 Build-Time: 17 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 11 Job: hilive_0.3-2 Machine Architecture: amd64 Package: hilive Package-Time: 42 Source-Version: 0.3-2 Space: 23864 Status: attempted Version: 0.3-2 -------------------------------------------------------------------------------- Finished at 2017-07-06T15:44:51Z Build needed 00:00:42, 23864k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 42.850048374s DC-Time-Estimation: 42.850048374 versus expected 1 (r/m: 41.850048374 ; m: 1.0)