DC-Build-Header: libpwiz 3.0.10827-3 / 2017-07-06 16:54:03 +0000 DC-Task: type:rebuild-binarch-only source:libpwiz version:3.0.10827-3 chroot:unstable esttime:2016 logfile:/tmp/libpwiz_3.0.10827-3_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang libpwiz_3.0.10827-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-41-97.eu-central-1.compute.internal +==============================================================================+ | libpwiz 3.0.10827-3 (amd64) Thu, 06 Jul 2017 16:54:03 +0000 | +==============================================================================+ Package: libpwiz Version: 3.0.10827-3 Source Version: 3.0.10827-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-194967ff-21d8-46f3-bb4a-957714baff89' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3958 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.9-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 251 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.9 amd64 1:3.9.1-10 [11.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.9 amd64 1:3.9.1-10 [5875 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.9-dev amd64 1:3.9.1-10 [2573 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.9 amd64 1:3.9.1-10 [37.4 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 0s (95.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9711 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.5-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../1-libncurses5_6.0+20161126-1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../3-libllvm3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libclang1-3.9:amd64. Preparing to unpack .../4-libclang1-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libclang1-3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-3.9-dev. Preparing to unpack .../8-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../9-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/libpwiz-JCwAY1 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libpwiz' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debichem/packages/libpwiz.git Please use: git clone https://anonscm.debian.org/git/debichem/packages/libpwiz.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2720 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main libpwiz 3.0.10827-3 (dsc) [2602 B] Get:2 http://127.0.0.1:9999/debian unstable/main libpwiz 3.0.10827-3 (tar) [2694 kB] Get:3 http://127.0.0.1:9999/debian unstable/main libpwiz 3.0.10827-3 (diff) [22.7 kB] Fetched 2720 kB in 0s (18.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libpwiz-JCwAY1/libpwiz-3.0.10827' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-JCwAY1' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-akKGqR/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-akKGqR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-akKGqR/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-akKGqR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-akKGqR/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-akKGqR/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-akKGqR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.56.0), libboost-date-time-dev (>= 1.56.0), libboost-iostreams-dev (>= 1.56.0), libboost-regex-dev (>= 1.56.0), libboost-filesystem-dev (>= 1.56.0), libboost-thread-dev (>= 1.56.0), libboost-system-dev (>= 1.56.0), libboost-chrono-dev (>= 1.56.0), libboost-dev (>= 1.56.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev Filtered Build-Depends: debhelper (>= 9), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.56.0), libboost-date-time-dev (>= 1.56.0), libboost-iostreams-dev (>= 1.56.0), libboost-regex-dev (>= 1.56.0), libboost-filesystem-dev (>= 1.56.0), libboost-thread-dev (>= 1.56.0), libboost-system-dev (>= 1.56.0), libboost-chrono-dev (>= 1.56.0), libboost-dev (>= 1.56.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev dpkg-deb: building package 'sbuild-build-depends-libpwiz-dummy' in '/<>/resolver-akKGqR/apt_archive/sbuild-build-depends-libpwiz-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libpwiz-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-akKGqR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-akKGqR/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-akKGqR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-akKGqR/apt_archive ./ Sources [644 B] Get:5 copy:/<>/resolver-akKGqR/apt_archive ./ Packages [724 B] Fetched 2331 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libpwiz build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono-dev libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time-dev libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost-tools-dev libboost1.62-dev libboost1.62-tools-dev libcroco3 libeigen3-dev libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libglib2.0-0 libice-dev libice6 libicu-dev libicu57 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery liblzma-dev libmagic-mgc libmagic1 libosp5 libpipeline1 libpng-dev libpng16-16 libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtool libvpx-dev libvpx4 libwebp6 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 lsb-base m4 man-db opensp pkg-config po-debconf sgml-base sgml-data ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make docbook-defguide docbook-dsssl docbook-xml psgml doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.62-doc libboost-context1.62-dev libboost-coroutine1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-signals1.62-dev libboost-test1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libmpfrc++-dev libntl-dev xsltproc docbook-xsl default-jdk fop libeigen3-doc libmrpt-dev libfftw3-doc libgd-tools libice-doc icu-doc liblzma-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libxcb-doc libxt-doc m4-doc less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libpng-tools libltdl-dev libx11-doc libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono-dev libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time-dev libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost-tools-dev libboost1.62-dev libboost1.62-tools-dev libcroco3 libeigen3-dev libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libglib2.0-0 libice-dev libice6 libicu-dev libicu57 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery liblzma-dev libmagic-mgc libmagic1 libosp5 libpipeline1 libpng-dev libpng16-16 libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtool libvpx-dev libvpx4 libwebp6 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 lsb-base m4 man-db opensp pkg-config po-debconf sbuild-build-depends-libpwiz-dummy sgml-base sgml-data ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 73.9 MB of archives. After this operation, 392 MB of additional disk space will be used. Get:1 copy:/<>/resolver-akKGqR/apt_archive ./ sbuild-build-depends-libpwiz-dummy 0.invalid.0 [946 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 sgml-base all 1.29 [14.8 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libxapian30 amd64 1.4.4-2 [1068 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 xml-core all 0.17 [23.2 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 sgml-data all 2.0.10 [181 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 docbook all 4.5-6 [129 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libosp5 amd64 1.5.2-13+b1 [948 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 opensp amd64 1.5.2-13+b1 [449 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 docbook-to-man amd64 1:2.0.0-37 [75.2 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 doxygen amd64 1.8.13-7 [3966 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.12.3-0.1 [303 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-6 [178 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62.0 amd64 1.62.0+dfsg-4+b1 [30.8 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62-dev amd64 1.62.0+dfsg-4+b1 [29.7 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4+b1 [32.7 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-4+b1 [36.3 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62-dev amd64 1.62.0+dfsg-4+b1 [36.7 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono-dev amd64 1.62.0.1 [4048 B] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62.0 amd64 1.62.0+dfsg-4+b1 [43.2 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4+b1 [126 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62-dev amd64 1.62.0+dfsg-4+b1 [163 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62-dev amd64 1.62.0+dfsg-4+b1 [50.4 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time-dev amd64 1.62.0.1 [3418 B] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4+b1 [63.6 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62-dev amd64 1.62.0+dfsg-4+b1 [34.2 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62-dev amd64 1.62.0+dfsg-4+b1 [73.2 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem-dev amd64 1.62.0.1 [3448 B] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4+b1 [288 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-6 [16.5 MB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62-dev amd64 1.62.0+dfsg-4+b1 [335 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4+b1 [51.1 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.62-dev amd64 1.62.0+dfsg-4+b1 [57.5 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams-dev amd64 1.62.0.1 [3408 B] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4+b1 [160 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62-dev amd64 1.62.0+dfsg-4+b1 [184 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options-dev amd64 1.62.0.1 [3430 B] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex-dev amd64 1.62.0.1 [3674 B] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system-dev amd64 1.62.0.1 [3554 B] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-4+b1 [71.8 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62-dev amd64 1.62.0+dfsg-4+b1 [71.6 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread-dev amd64 1.62.0.1 [3442 B] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-tools-dev amd64 1.62.0+dfsg-4+b1 [1202 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libboost-tools-dev amd64 1.62.0.1 [3592 B] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libeigen3-dev all 3.3.4-2 [842 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.1-3 [137 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-double3 amd64 3.3.6p2-1 [732 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-long3 amd64 3.3.6p2-1 [315 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.6p2-1 [556 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-single3 amd64 3.3.6p2-1 [764 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-bin amd64 3.3.6p2-1 [50.1 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-dev amd64 3.3.6p2-1 [2123 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.29-3 [281 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8-0.2 [449 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.12.3-0.1 [366 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libpng-dev amd64 1.6.29-3 [251 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6-dev amd64 2.8-0.2 [2652 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1-dev amd64 2.12.3-0.1 [909 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.8-3 [237 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.4-3 [290 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.4-3 [747 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libgd3 amd64 2.2.4-2 [132 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 7.0.31-1 [728 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-input-dev all 2.3.2-1 [158 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-kb-dev all 1.0.7-1 [233 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.12-1 [169 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.4-3 [815 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libxpm-dev amd64 1:3.5.12-1 [104 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libsm-dev amd64 2:1.2.2-1+b3 [35.8 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libxt-dev amd64 1:1.1.5-1 [423 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libvpx4 amd64 1.6.1-3 [776 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libvpx-dev amd64 1.6.1-3 [868 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libjbig-dev amd64 2.1-3.1+b2 [30.5 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libtiffxx5 amd64 4.0.8-3 [95.3 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5-dev amd64 4.0.8-3 [359 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libgd-dev amd64 2.2.4-2 [271 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libjs-jquery all 3.1.1-2 [154 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.9 MB in 0s (99.3 MB/s) Selecting previously unselected package groff-base. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../000-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../002-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../003-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../004-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../005-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package lsb-base. 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Unpacking libicu57:amd64 (57.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../013-libxml2_2.9.4+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-3) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.11-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-1_amd64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) ... Selecting previously unselected package automake. 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Setting up libboost-dev:amd64 (1.62.0.1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up liblzma-dev:amd64 (5.2.2-1.2+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libfftw3-long3:amd64 (3.3.6p2-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-2) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4+b1) ... 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Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 chrpath_0.16-2+b1 clang-3.9_1:3.9.1-10 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 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libboost-date-time1.62-dev_1.62.0+dfsg-4+b1 libboost-date-time1.62.0_1.62.0+dfsg-4+b1 libboost-dev_1.62.0.1 libboost-filesystem-dev_1.62.0.1 libboost-filesystem1.62-dev_1.62.0+dfsg-4+b1 libboost-filesystem1.62.0_1.62.0+dfsg-4+b1 libboost-iostreams-dev_1.62.0.1 libboost-iostreams1.62-dev_1.62.0+dfsg-4+b1 libboost-iostreams1.62.0_1.62.0+dfsg-4+b1 libboost-program-options-dev_1.62.0.1 libboost-program-options1.62-dev_1.62.0+dfsg-4+b1 libboost-program-options1.62.0_1.62.0+dfsg-4+b1 libboost-regex-dev_1.62.0.1 libboost-regex1.62-dev_1.62.0+dfsg-4+b1 libboost-regex1.62.0_1.62.0+dfsg-4+b1 libboost-serialization1.62-dev_1.62.0+dfsg-4+b1 libboost-serialization1.62.0_1.62.0+dfsg-4+b1 libboost-system-dev_1.62.0.1 libboost-system1.62-dev_1.62.0+dfsg-4+b1 libboost-system1.62.0_1.62.0+dfsg-4+b1 libboost-thread-dev_1.62.0.1 libboost-thread1.62-dev_1.62.0+dfsg-4+b1 libboost-thread1.62.0_1.62.0+dfsg-4+b1 libboost-tools-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4+b1 libboost1.62-tools-dev_1.62.0+dfsg-4+b1 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-9 libcilkrts5_7.1.0-9 libclang-common-3.9-dev_1:3.9.1-10 libclang1-3.9_1:3.9.1-10 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libdb5.3_5.3.28-12+b1 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libeigen3-dev_3.3.4-2 libexpat1_2.2.1-3 libexpat1-dev_2.2.1-3 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfftw3-bin_3.3.6p2-1 libfftw3-dev_3.3.6p2-1 libfftw3-double3_3.3.6p2-1 libfftw3-long3_3.3.6p2-1 libfftw3-quad3_3.3.6p2-1 libfftw3-single3_3.3.6p2-1 libfile-stripnondeterminism-perl_0.035-2 libfontconfig1_2.12.3-0.1 libfontconfig1-dev_2.12.3-0.1 libfreetype6_2.8-0.2 libfreetype6-dev_2.8-0.2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-1 libgcc1_1:7.1.0-9 libgcrypt20_1.7.8-1 libgd-dev_2.2.4-2 libgd3_2.2.4-2 libgdbm3_1.8.3-14 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.13-2 libgomp1_7.1.0-9 libgpg-error0_1.27-3 libhogweed4_3.3-1+b1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-dev_57.1-6 libicu57_57.1-6 libidn2-0_0.16-1+b1 libisl15_0.18-1 libitm1_7.1.0-9 libjbig-dev_2.1-3.1+b2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.1-2 libjpeg62-turbo_1:1.5.1-2 libjpeg62-turbo-dev_1:1.5.1-2 libjs-jquery_3.1.1-2 libjsoncpp1_1.7.4-3 libllvm3.9_1:3.9.1-10 liblsan0_7.1.0-9 liblz4-1_0.0~r131-2+b1 liblzma-dev_5.2.2-1.2+b1 liblzma5_5.2.2-1.2+b1 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libosp5_1.5.2-13+b1 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libpng-dev_1.6.29-3 libpng16-16_1.6.29-3 libpthread-stubs0-dev_0.3-4 libquadmath0_7.1.0-9 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.29.2-1 libss2_1.43.4-2 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libtasn1-6_4.12-2 libtiff5_4.0.8-3 libtiff5-dev_4.0.8-3 libtiffxx5_4.0.8-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libvpx-dev_1.6.1-3 libvpx4_1.6.1-3 libwebp6_0.5.2-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libxapian30_1.4.4-2 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb1_1.12-1 libxcb1-dev_1.12-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-3 libxpm-dev_1:3.5.12-1 libxpm4_1:3.5.12-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 opensp_1.5.2-13+b1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 pkg-config_0.29-4+b1 po-debconf_1.0.20 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libpwiz-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sgml-base_1.29 sgml-data_2.0.10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 ucf_3.0036 util-linux_2.29.2-1 x11-common_1:7.7+19 x11proto-core-dev_7.0.31-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 xml-core_0.17 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 5 19:00:40 2017 UTC gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwiz_3.0.10827-3.dsc dpkg-source: info: extracting libpwiz in /<> dpkg-source: info: unpacking libpwiz_3.0.10827.orig.tar.gz dpkg-source: info: unpacking libpwiz_3.0.10827-3.debian.tar.xz dpkg-source: info: applying 0001-New-patch-for-the-missing-eigen3-nnls-header-file.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-194967ff-21d8-46f3-bb4a-957714baff89 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libpwiz dpkg-buildpackage: info: source version 3.0.10827-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build libpwiz-3.0.10827 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: parallel=16 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the clean target dh_testdir dh_testroot rm -f debian/msconvert.1 rm -f debian/idconvert.1 rm -f debian/mscat.1 rm -f debian/txt2mzml.1 rm -rf /<>/debian/build rm -rf debian/includes rm -rf doc/dox/html rm -f configure-stamp rm -f build-arch-stamp rm -f build-indep-stamp dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars debian/libpwiz-doc.substvars debian/files rm -fr -- debian/libpwiz-dev/ debian/libpwiz3/ debian/libpwiz-tools/ debian/libpwiz-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: parallel=16 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/eigen3-nnls"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/CSpline"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_62 checking for the flags needed to use pthreads... -pthread checking for the toolset name used by Boost for g++... gcc42 -gcc checking boost/system/error_code.hpp usability... yes checking boost/system/error_code.hpp presence... yes checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking boost/thread.hpp usability... yes checking boost/thread.hpp presence... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/filesystem/path.hpp usability... yes checking boost/filesystem/path.hpp presence... yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking boost/regex.hpp usability... yes checking boost/regex.hpp presence... yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking boost/archive/text_oarchive.hpp usability... yes checking boost/archive/text_oarchive.hpp presence... yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/iostreams/device/file_descriptor.hpp usability... yes checking boost/iostreams/device/file_descriptor.hpp presence... yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking boost/date_time/posix_time/posix_time.hpp usability... yes checking boost/date_time/posix_time/posix_time.hpp presence... yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking boost/program_options.hpp usability... yes checking boost/program_options.hpp presence... yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/chrono.hpp usability... yes checking boost/chrono.hpp presence... yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' depbase=`echo libraries/boost_aux/libs/nowide/src/iostream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF $depbase.Tpo -c -o libraries/boost_aux/libs/nowide/src/iostream.lo libraries/boost_aux/libs/nowide/src/iostream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -fPIC -DPIC -o libraries/boost_aux/libs/nowide/src/.libs/iostream.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -o libraries/boost_aux/libs/nowide/src/iostream.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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/<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/Reader_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeCalculator.lo pwiz/utility/chemistry/IsotopeCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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-MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/DefaultReaderList.lo pwiz/data/tradata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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/<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/DefaultReaderList.lo -MD -MP -MF pwiz/data/tradata/.deps/DefaultReaderList.Tpo -c pwiz/data/tradata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/DefaultReaderList.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/DefaultReaderList.lo -MD -MP -MF pwiz/data/tradata/.deps/DefaultReaderList.Tpo -c pwiz/data/tradata/DefaultReaderList.cpp -o pwiz/data/tradata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_IonMobility.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_IonMobility.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/SpectrumList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/SpectrumList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RunSummary.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RunSummary.lo -MD -MP -MF pwiz/analysis/passive/.deps/RunSummary.Tpo -c pwiz/analysis/passive/RunSummary.cpp -o pwiz/analysis/passive/RunSummary.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzXML.Tpo -c pwiz/data/msdata/SpectrumList_mzXML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_mzXML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzXML.Tpo -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Index_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Index_mzML.lo pwiz/data/msdata/Index_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Index_mzML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/proteome/IPIFASTADatabase.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/utility/proteome/IPIFASTADatabase.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -fPIC -DPIC -o pwiz/utility/proteome/.libs/IPIFASTADatabase.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -o pwiz/utility/proteome/IPIFASTADatabase.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/MZTolerance.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF pwiz/utility/chemistry/.deps/MZTolerance.Tpo -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" 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pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 depbase=`echo pwiz/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianParameters.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" 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-I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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pwiz/data/vendor_readers/Thermo/.libs/ChromatogramList_Thermo.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/ChromatogramList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp -o pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" 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$depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideID_pepXML.lo pwiz/analysis/peptideid/PeptideID_pepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -o pwiz/analysis/peptideid/PeptideID_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakPicker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp:205:24: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] for (const auto& pg : s->paramGroupPtrs) ^ pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp:205:33: warning: range-based for loop is a C++11 extension [-Wc++11-extensions] for (const auto& pg : s->paramGroupPtrs) ^ 2 warnings generated. libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakPicker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o >/dev/null 2>&1 depbase=`echo pwiz_tools/common/MSDataAnalyzerApplication.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/common/MSDataAnalyzerApplication.lo pwiz_tools/common/MSDataAnalyzerApplication.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -fPIC -DPIC -o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -o pwiz_tools/common/MSDataAnalyzerApplication.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxSolver.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxSolver.lo pwiz/analysis/demux/DemuxSolver.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxSolver.Tpo -c pwiz/analysis/demux/DemuxSolver.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxSolver.o In file included from pwiz/analysis/demux/DemuxSolver.cpp:22: pwiz/analysis/demux/DemuxSolver.hpp:65:90: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] void Solve(const MatrixPtr& masks, const MatrixPtr& signal, MatrixPtr& solution) override; ^ 1 warning generated. libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxSolver.Tpo -c pwiz/analysis/demux/DemuxSolver.cpp -o pwiz/analysis/demux/DemuxSolver.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFinder.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFinder.lo pwiz/analysis/peakdetect/PeakFinder.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFinder.Tpo -c pwiz/analysis/peakdetect/PeakFinder.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFinder.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFinder.Tpo -c pwiz/analysis/peakdetect/PeakFinder.cpp -o pwiz/analysis/peakdetect/PeakFinder.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/IO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/IO.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/IO.lo pwiz/data/msdata/IO.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/IO.lo -MD -MP -MF pwiz/data/msdata/.deps/IO.Tpo -c pwiz/data/msdata/IO.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/IO.o pwiz/data/msdata/IO.cpp:2019:35: warning: '&&' within '||' [-Wlogical-op-parentheses] else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/IO.cpp:2019:35: note: place parentheses around the '&&' expression to silence this warning else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") ^ ( ) pwiz/data/msdata/IO.cpp:2730:31: warning: '&&' within '||' [-Wlogical-op-parentheses] else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/IO.cpp:2730:31: note: place parentheses around the '&&' expression to silence this warning else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || ^ ( ) 2 warnings generated. libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/IO.lo -MD -MP -MF pwiz/data/msdata/.deps/IO.Tpo -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetector.lo pwiz/analysis/peakdetect/PeakFamilyDetector.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetector.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetector.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetector.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/Filesystem.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/Filesystem.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/Filesystem.lo pwiz/utility/misc/Filesystem.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/Filesystem.lo -MD -MP -MF pwiz/utility/misc/.deps/Filesystem.Tpo -c pwiz/utility/misc/Filesystem.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/Filesystem.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" 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-DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/IdentDataFile.lo -MD -MP -MF pwiz/data/identdata/.deps/IdentDataFile.Tpo -c pwiz/data/identdata/IdentDataFile.cpp -o pwiz/data/identdata/IdentDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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"/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/Reader_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp -o pwiz/data/vendor_readers/UIMF/Reader_UIMF.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/DelimWriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DelimWriter.lo -MD -MP -MF pwiz/data/identdata/.deps/DelimWriter.Tpo -c pwiz/data/identdata/DelimWriter.cpp -o pwiz/data/identdata/DelimWriter.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/SHA1.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/SHA1.lo pwiz/utility/misc/SHA1.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/MSXDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/MSXDemultiplexer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/MSXDemultiplexer.lo pwiz/analysis/demux/MSXDemultiplexer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/MSXDemultiplexer.lo -MD -MP -MF pwiz/analysis/demux/.deps/MSXDemultiplexer.Tpo -c pwiz/analysis/demux/MSXDemultiplexer.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/MSXDemultiplexer.o In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:23: In file included from pwiz/analysis/demux/IDemultiplexer.hpp:23: pwiz/analysis/demux/IPrecursorMaskCodec.hpp:31:9: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto upperOffsetParam = p.isolationWindow.cvParam(cv::MS_isolation_window_upper_offset); ^ pwiz/analysis/demux/IPrecursorMaskCodec.hpp:42:9: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lowerOffsetParam = p.isolationWindow.cvParam(cv::MS_isolation_window_lower_offset); ^ pwiz/analysis/demux/IPrecursorMaskCodec.hpp:53:9: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto targetParam = p.isolationWindow.cvParam(cv::MS_isolation_window_target_m_z); ^ pwiz/analysis/demux/IPrecursorMaskCodec.hpp:87:76: error: use of undeclared identifier 'stof'; did you mean 'atof'? inline bool stringToFloatCompare(std::string i, std::string j){ return stof(i) < stof(j); } ^~~~ atof /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0/../../../../include/c++/6.4.0/stdlib.h:55:12: note: 'atof' declared here using std::atof; ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:23: In file included from pwiz/analysis/demux/IDemultiplexer.hpp:23: pwiz/analysis/demux/IPrecursorMaskCodec.hpp:87:81: error: no viable conversion from 'std::string' (aka 'basic_string') to 'const char *' inline bool stringToFloatCompare(std::string i, std::string j){ return stof(i) < stof(j); } ^ /usr/include/x86_64-linux-gnu/bits/stdlib-float.h:26:26: note: passing argument to parameter '__nptr' here __NTH (atof (const char *__nptr)) ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:23: In file included from pwiz/analysis/demux/IDemultiplexer.hpp:23: pwiz/analysis/demux/IPrecursorMaskCodec.hpp:87:86: error: use of undeclared identifier 'stof'; did you mean 'atof'? inline bool stringToFloatCompare(std::string i, std::string j){ return stof(i) < stof(j); } ^~~~ atof /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0/../../../../include/c++/6.4.0/stdlib.h:55:12: note: 'atof' declared here using std::atof; ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:23: In file included from pwiz/analysis/demux/IDemultiplexer.hpp:23: pwiz/analysis/demux/IPrecursorMaskCodec.hpp:87:91: error: no viable conversion from 'std::string' (aka 'basic_string') to 'const char *' inline bool stringToFloatCompare(std::string i, std::string j){ return stof(i) < stof(j); } ^ /usr/include/x86_64-linux-gnu/bits/stdlib-float.h:26:26: note: passing argument to parameter '__nptr' here __NTH (atof (const char *__nptr)) ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:23: In file included from pwiz/analysis/demux/IDemultiplexer.hpp:23: pwiz/analysis/demux/IPrecursorMaskCodec.hpp:106:13: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto mult = mz * 100000000.0; ^ pwiz/analysis/demux/IPrecursorMaskCodec.hpp:107:13: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto rounded = llround(mult); ^ pwiz/analysis/demux/IPrecursorMaskCodec.hpp:155:13: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto center = static_cast(llround(inner.mzLow + (inner.mzHigh - inner.mzLow) / 2.0)); ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:24: In file included from pwiz/analysis/demux/DemuxHelpers.hpp:30: pwiz/analysis/demux/EnumConstantNotPresentException.hpp:38:48: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] ~EnumConstantNotPresentException() throw() override {} ^ pwiz/analysis/demux/EnumConstantNotPresentException.hpp:41:38: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] const char* what() const throw() override ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: In file included from pwiz/analysis/demux/MSXDemultiplexer.hpp:24: pwiz/analysis/demux/DemuxHelpers.hpp:59:14: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] for (auto it = m.begin(); it != m.end(); ++it) { ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: pwiz/analysis/demux/MSXDemultiplexer.hpp:64:97: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] void Initialize(msdata::SpectrumList_const_ptr slc, IPrecursorMaskCodec::const_ptr pmc) override; ^ pwiz/analysis/demux/MSXDemultiplexer.hpp:68:44: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] DemuxTypes::MatrixPtr& signal) override; ^ pwiz/analysis/demux/MSXDemultiplexer.hpp:69:120: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] void GetMatrixBlockIndices(size_t indexToDemux, std::vector& muxIndices, double demuxBlockExtra) const override; ^ pwiz/analysis/demux/MSXDemultiplexer.hpp:70:60: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] const std::vector& SpectrumIndices() const override; ^ In file included from pwiz/analysis/demux/MSXDemultiplexer.cpp:21: In file included from pwiz/analysis/demux/SpectrumPeakExtractor.hpp:26: pwiz/analysis/demux/DemuxSolver.hpp:65:90: warning: 'override' keyword is a C++11 extension [-Wc++11-extensions] void Solve(const MatrixPtr& masks, const MatrixPtr& signal, MatrixPtr& solution) override; ^ pwiz/analysis/demux/MSXDemultiplexer.cpp:89:28: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] for (const auto& p : s->precursors) ^ pwiz/analysis/demux/MSXDemultiplexer.cpp:89:36: warning: range-based for loop is a C++11 extension [-Wc++11-extensions] for (const auto& p : s->precursors) ^ pwiz/analysis/demux/MSXDemultiplexer.cpp:91:21: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto injectParam = p.userParam("MultiFillTime"); ^ pwiz/analysis/demux/MSXDemultiplexer.cpp:111:9: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto numSpectraToFind = pmc_->GetDemuxBlockSize() + size_t(round(demuxBlockExtra * pmc_->GetSpectraPerCycle())); ^ 18 warnings and 4 errors generated. Makefile:5000: recipe for target 'pwiz/analysis/demux/MSXDemultiplexer.lo' failed make[1]: *** [pwiz/analysis/demux/MSXDemultiplexer.lo] Error 1 make[1]: Leaving directory '/<>/debian/build' debian/rules:117: recipe for target 'build-arch-stamp' failed make: *** [build-arch-stamp] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T17:00:03Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 170472 Build-Time: 330 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 15 Job: libpwiz_3.0.10827-3 Machine Architecture: amd64 Package: libpwiz Package-Time: 360 Source-Version: 3.0.10827-3 Space: 170472 Status: attempted Version: 3.0.10827-3 -------------------------------------------------------------------------------- Finished at 2017-07-06T17:00:03Z Build needed 00:06:00, 170472k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 361.27945961s DC-Time-Estimation: 361.27945961 versus expected 2016 (r/m: 4.580167779746641 ; m: 361.27945961)