DC-Build-Header: mpich 3.2-7 / 2017-07-06 18:28:41 +0000 DC-Task: type:rebuild-binarch-only source:mpich version:3.2-7 chroot:unstable esttime:703 logfile:/tmp/mpich_3.2-7_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang mpich_3.2-7' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-36-99.eu-central-1.compute.internal +==============================================================================+ | mpich 3.2-7 (amd64) Thu, 06 Jul 2017 18:28:41 +0000 | +==============================================================================+ Package: mpich Version: 3.2-7 Source Version: 3.2-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-4eb5ccf7-3bd3-4396-b55a-9b9934027fb8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5730 kB] Fetched 5730 kB in 1s (3836 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-3.9-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 251 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.5-1 [89.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20161126-1 [93.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm3.9 amd64 1:3.9.1-10 [11.3 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-3.9 amd64 1:3.9.1-10 [5875 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.1.0-9 [51.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-1 [197 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-3.9-dev amd64 1:3.9.1-10 [2573 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 clang-3.9 amd64 1:3.9.1-10 [37.4 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 0s (97.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9711 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.8.5-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.5-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../1-libncurses5_6.0+20161126-1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../2-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../3-libllvm3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libclang1-3.9:amd64. Preparing to unpack .../4-libclang1-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking libclang1-3.9:amd64 (1:3.9.1-10) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../5-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../6-libobjc4_7.1.0-9_amd64.deb ... Unpacking libobjc4:amd64 (7.1.0-9) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../7-libobjc-6-dev_6.4.0-1_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-1) ... Selecting previously unselected package libclang-common-3.9-dev. Preparing to unpack .../8-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../9-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libbsd0:amd64 (0.8.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/mpich-iVsbs8 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mpich' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-science/packages/mpich.git Please use: git clone https://anonscm.debian.org/git/debian-science/packages/mpich.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.9 MB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main mpich 3.2-7 (dsc) [2506 B] Get:2 http://127.0.0.1:9999/debian unstable/main mpich 3.2-7 (tar) [11.9 MB] Get:3 http://127.0.0.1:9999/debian unstable/main mpich 3.2-7 (diff) [43.7 kB] Fetched 11.9 MB in 0s (51.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mpich-iVsbs8/mpich-3.2' with '<>' I: NOTICE: Log filtering will replace 'build/mpich-iVsbs8' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-XxytJ2/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-XxytJ2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-XxytJ2/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-XxytJ2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-XxytJ2/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-XxytJ2/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-XxytJ2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: automake, debhelper (>= 9), dh-autoreconf, gfortran (>= 4:5.2.1), hwloc-nox, libcr-dev, libhwloc-dev, libxt-dev, procps, quilt, txt2man, valgrind, x11proto-core-dev Filtered Build-Depends: automake, debhelper (>= 9), dh-autoreconf, gfortran (>= 4:5.2.1), hwloc-nox, libcr-dev, libhwloc-dev, libxt-dev, procps, quilt, txt2man, valgrind, x11proto-core-dev dpkg-deb: building package 'sbuild-build-depends-mpich-dummy' in '/<>/resolver-XxytJ2/apt_archive/sbuild-build-depends-mpich-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mpich-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-XxytJ2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-XxytJ2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-XxytJ2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-XxytJ2/apt_archive ./ Sources [620 B] Get:5 copy:/<>/resolver-XxytJ2/apt_archive ./ Packages [657 B] Fetched 2240 B in 0s (0 B/s) Reading package lists... Reading package lists... Install mpich build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism diffstat file gawk gettext gettext-base gfortran gfortran-6 groff-base hwloc-nox intltool-debian libarchive-zip-perl libc6-dbg libcr-dev libcr0 libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libhwloc-dev libhwloc5 libice-dev libice6 libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnuma-dev libnuma1 libpipeline1 libprocps6 libpthread-stubs0-dev libreadline7 libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxt-dev libxt6 lsb-base m4 man-db po-debconf procps quilt readline-common txt2man valgrind x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff blcr-dkms libhwloc-contrib-plugins libice-doc libtool-doc libsm-doc gcj-jdk libxcb-doc libxt-doc m4-doc less www-browser libmail-box-perl procmail graphviz default-mta | mail-transport-agent readline-doc valgrind-mpi kcachegrind alleyoop valkyrie Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins libx11-doc xml-core libmail-sendmail-perl psmisc less valgrind-dbg gdb The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism diffstat file gawk gettext gettext-base gfortran gfortran-6 groff-base hwloc-nox intltool-debian libarchive-zip-perl libc6-dbg libcr-dev libcr0 libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libhwloc-dev libhwloc5 libice-dev libice6 libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnuma-dev libnuma1 libpipeline1 libprocps6 libpthread-stubs0-dev libreadline7 libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxt-dev libxt6 lsb-base m4 man-db po-debconf procps quilt readline-common sbuild-build-depends-mpich-dummy txt2man valgrind x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 56.2 MB of archives. After this operation, 203 MB of additional disk space will be used. Get:1 copy:/<>/resolver-XxytJ2/apt_archive ./ sbuild-build-depends-mpich-dummy 0.invalid.0 [870 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.12-3 [58.1 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.12-3 [249 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 diffstat amd64 1.61-1+b1 [32.8 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-1 [265 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran-6-dev amd64 6.4.0-1 [299 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 gfortran-6 amd64 6.4.0-1 [6911 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 gfortran amd64 4:6.3.0-4d1 [1362 B] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 hwloc-nox amd64 1.11.5-1 [152 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libc6-dbg amd64 2.24-12 [9122 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libcr0 amd64 0.8.5-2.3+b1 [33.2 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libcr-dev amd64 0.8.5-2.3+b1 [40.4 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-2.1 [46.0 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.5-1 [167 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 7.0.31-1 [728 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libsm-dev amd64 2:1.2.2-1+b3 [35.8 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.4-3 [290 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.4-3 [747 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-input-dev all 2.3.2-1 [158 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-kb-dev all 1.0.7-1 [233 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.12-1 [169 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.4-3 [815 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libxt-dev amd64 1:1.1.5-1 [423 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 quilt all 0.63-8 [308 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 txt2man all 1.6.0-1 [31.6 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 valgrind amd64 1:3.12.0-1.1 [13.1 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.2 MB in 0s (96.1 MB/s) Selecting previously unselected package groff-base. 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Setting up x11proto-kb-dev (1.0.7-1) ... Setting up m4 (1.4.18-1) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up libprocps6:amd64 (2:3.3.12-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:amd64 (1:5.30-1) ... Setting up lsb-base (9.20161125) ... Setting up procps (2:3.3.12-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.12-1) ... Setting up xtrans-dev (1.3.5-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up autotools-dev (20161112.1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up valgrind (1:3.12.0-1.1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libnuma-dev:amd64 (2.0.11-2.1) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libx11-data (2:1.6.4-3) ... Setting up diffstat (1.61-1+b1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-2) ... Setting up libcr-dev (0.8.5-2.3+b1) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up gfortran-6 (6.4.0-1) ... Setting up x11proto-core-dev (7.0.31-1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up txt2man (1.6.0-1) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:amd64 (1.12-1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libtool (2.4.6-2) ... Setting up hwloc-nox (1.11.5-1) ... Setting up gfortran (4:6.3.0-4d1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up quilt (0.63-8) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:amd64 (1.11.5-1) ... 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Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-3.9_1:3.9.1-10 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffstat_1.61-1+b1 diffutils_1:3.5-3 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Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Aug 10 08:53:12 2016 UTC gpgv: using RSA key 4B043FCDB9444540 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mpich_3.2-7.dsc dpkg-source: info: extracting mpich in /<> dpkg-source: info: unpacking mpich_3.2.orig.tar.gz dpkg-source: info: unpacking mpich_3.2-7.debian.tar.xz dpkg-source: info: applying 10_gcc-check.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-4eb5ccf7-3bd3-4396-b55a-9b9934027fb8 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mpich dpkg-buildpackage: info: source version 3.2-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mattia Rizzolo dpkg-source --before-build mpich-3.2 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel --with autoreconf dh_testdir -O--parallel dh_auto_clean -O--parallel dh_autoreconf_clean -O--parallel dh_clean -O--parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/libmpich-dev.debhelper.log debian/libmpich12.debhelper.log debian/mpich-doc.debhelper.log debian/mpich.debhelper.log rm -f -- debian/libmpich-dev.substvars debian/libmpich12.substvars debian/mpich.substvars debian/mpich-doc.substvars debian/files rm -fr -- debian/libmpich-dev/ debian/libmpich12/ debian/mpich/ debian/mpich-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch --parallel --with autoreconf dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel install -d debian/.debhelper/bucket/files cp -an --reflink=auto confdb/config.guess debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp mv debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15 cp -f /usr/share/misc/config.guess ./confdb/config.guess cp -an --reflink=auto test/mpi/confdb/config.guess debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp mv debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15 cp -f /usr/share/misc/config.guess ./test/mpi/confdb/config.guess cp -an --reflink=auto src/mpl/confdb/config.guess debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp mv debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15 cp -f /usr/share/misc/config.guess ./src/mpl/confdb/config.guess cp -an 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mv debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15 cp -f /usr/share/misc/config.guess ./src/pm/hydra/confdb/config.guess cp -an --reflink=auto src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp mv debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15 cp -f /usr/share/misc/config.guess ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess cp -an --reflink=auto src/mpi/romio/confdb/config.guess debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp mv debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15.tmp debian/.debhelper/bucket/files/b7eab9b8a73dc6e0421366bca6921cd2621dab6c3909d6e3bebf863011442d15 cp -f /usr/share/misc/config.guess ./src/mpi/romio/confdb/config.guess cp -an --reflink=auto confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./confdb/config.sub cp -an --reflink=auto test/mpi/confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./test/mpi/confdb/config.sub cp -an --reflink=auto src/mpl/confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./src/mpl/confdb/config.sub cp -an --reflink=auto src/openpa/confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./src/openpa/confdb/config.sub cp -an --reflink=auto src/pm/hydra/mpl/confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./src/pm/hydra/mpl/confdb/config.sub cp -an --reflink=auto src/pm/hydra/confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./src/pm/hydra/confdb/config.sub cp -an --reflink=auto src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub cp -an --reflink=auto src/mpi/romio/confdb/config.sub debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp mv debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af.tmp debian/.debhelper/bucket/files/82745ce935695e7984a053c155a64b9ad16ece3a07d931cc90ab3fb28b7221af cp -f /usr/share/misc/config.sub ./src/mpi/romio/confdb/config.sub debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'confdb'. libtoolize: copying file 'confdb/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'confdb'. libtoolize: copying file 'confdb/libtool.m4' libtoolize: copying file 'confdb/ltoptions.m4' libtoolize: copying file 'confdb/ltsugar.m4' libtoolize: copying file 'confdb/ltversion.m4' libtoolize: copying file 'confdb/lt~obsolete.m4' configure.ac:609: installing 'confdb/compile' configure.ac:630: installing 'confdb/missing' Makefile.am: installing 'confdb/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + > debian/autoreconf.after autoreconf -f -i src/mpl src/openpa src/mpi/romio src/pm/hydra libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'confdb'. libtoolize: copying file 'confdb/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'confdb'. libtoolize: copying file 'confdb/libtool.m4' libtoolize: copying file 'confdb/ltoptions.m4' libtoolize: copying file 'confdb/ltsugar.m4' libtoolize: copying file 'confdb/ltversion.m4' libtoolize: copying file 'confdb/lt~obsolete.m4' configure.ac:17: installing 'confdb/compile' configure.ac:14: installing 'confdb/missing' Makefile.am: installing 'confdb/depcomp' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'confdb'. libtoolize: copying file 'confdb/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'confdb'. libtoolize: copying file 'confdb/libtool.m4' libtoolize: copying file 'confdb/ltoptions.m4' libtoolize: copying file 'confdb/ltsugar.m4' libtoolize: copying file 'confdb/ltversion.m4' libtoolize: copying file 'confdb/lt~obsolete.m4' configure.ac:19: installing 'confdb/compile' configure.ac:15: installing 'confdb/missing' src/Makefile.am: installing 'confdb/depcomp' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'confdb'. libtoolize: copying file 'confdb/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'confdb'. libtoolize: copying file 'confdb/libtool.m4' libtoolize: copying file 'confdb/ltoptions.m4' libtoolize: copying file 'confdb/ltsugar.m4' libtoolize: copying file 'confdb/ltversion.m4' libtoolize: copying file 'confdb/lt~obsolete.m4' configure.ac:29: installing 'confdb/compile' configure.ac:25: installing 'confdb/missing' Makefile.am: installing 'confdb/depcomp' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'confdb'. libtoolize: copying file 'confdb/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'confdb'. libtoolize: copying file 'confdb/libtool.m4' libtoolize: copying file 'confdb/ltoptions.m4' libtoolize: copying file 'confdb/ltsugar.m4' libtoolize: copying file 'confdb/ltversion.m4' libtoolize: copying file 'confdb/lt~obsolete.m4' configure.ac:20: installing 'confdb/compile' configure.ac:36: installing 'confdb/missing' Makefile.am: installing 'confdb/depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-shared --prefix=/usr --enable-fortran=all --disable-rpath --disable-wrapper-rpath --sysconfdir=/etc/mpich --libdir=/usr/lib/x86_64-linux-gnu --includedir=/usr/include/mpich --docdir=/usr/share/doc/mpich --with-hwloc-prefix=system --enable-checkpointing --with-hydra-ckpointlib=blcr CPPFLAGS="" CFLAGS="" CXXFLAGS="" FFLAGS="" FCFLAGS="" ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-shared --prefix=/usr --enable-fortran=all --disable-rpath --disable-wrapper-rpath --sysconfdir=/etc/mpich --libdir=/usr/lib/x86_64-linux-gnu --includedir=/usr/include/mpich --docdir=/usr/share/doc/mpich --with-hwloc-prefix=system --enable-checkpointing --with-hydra-ckpointlib=blcr CPPFLAGS= CFLAGS= CXXFLAGS= FFLAGS= FCFLAGS= Configuring MPICH version 3.2 with '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--libexecdir=${prefix}/lib/x86_64-linux-gnu' '--disable-maintainer-mode' '--disable-dependency-tracking' '--enable-shared' '--prefix=/usr' '--enable-fortran=all' '--disable-rpath' '--disable-wrapper-rpath' '--sysconfdir=/etc/mpich' '--libdir=/usr/lib/x86_64-linux-gnu' '--includedir=/usr/include/mpich' '--docdir=/usr/share/doc/mpich' '--with-hwloc-prefix=system' '--enable-checkpointing' '--with-hydra-ckpointlib=blcr' 'CPPFLAGS=' 'CFLAGS=' 'CXXFLAGS=' 'FFLAGS=' 'FCFLAGS=' 'build_alias=x86_64-linux-gnu' 'MPICHLIB_CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'MPICHLIB_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'MPICHLIB_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'LDFLAGS=-Wl,-z,relro' 'FC=gfortran' 'F77=gfortran' 'MPILIBNAME=mpich' Running on system: Linux ip-172-31-36-99 4.9.0-2-amd64 #1 SMP Debian 4.9.18-1 (2017-03-30) x86_64 GNU/Linux checking for icc... no checking for pgcc... no checking for xlc... no checking for xlC... no checking for pathcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... none checking whether to enable maintainer-specific portions of Makefiles... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for icpc... no checking for pgCC... no checking for xlC... no checking for pathCC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:nemesis configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' --disable-versioning '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--libexecdir=${prefix}/lib/x86_64-linux-gnu' '--disable-maintainer-mode' '--disable-dependency-tracking' '--enable-shared' '--enable-fortran=all' '--disable-rpath' '--disable-wrapper-rpath' '--sysconfdir=/etc/mpich' '--libdir=/usr/lib/x86_64-linux-gnu' '--includedir=/usr/include/mpich' '--docdir=/usr/share/doc/mpich' '--with-hwloc-prefix=system' '--enable-checkpointing' '--with-hydra-ckpointlib=blcr' 'CPPFLAGS= -Wdate-time -D_FORTIFY_SOURCE=2' 'CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ' 'CXXFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'FFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'FCFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'build_alias=x86_64-linux-gnu' 'MPICHLIB_CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'MPICHLIB_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'MPICHLIB_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'LDFLAGS=-Wl,-z,relro' 'FC=gfortran' 'F77=gfortran' 'MPILIBNAME=mpich' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' --disable-versioning --with-atomic-primitives=auto_allow_emulation '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--libexecdir=${prefix}/lib/x86_64-linux-gnu' '--disable-maintainer-mode' '--disable-dependency-tracking' '--enable-shared' '--enable-fortran=all' '--disable-rpath' '--disable-wrapper-rpath' '--sysconfdir=/etc/mpich' '--libdir=/usr/lib/x86_64-linux-gnu' '--includedir=/usr/include/mpich' '--docdir=/usr/share/doc/mpich' '--with-hwloc-prefix=system' '--enable-checkpointing' '--with-hydra-ckpointlib=blcr' 'CPPFLAGS= -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src' 'CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ' 'CXXFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'FFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'FCFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'build_alias=x86_64-linux-gnu' 'MPICHLIB_CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'MPICHLIB_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'MPICHLIB_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'LDFLAGS=-Wl,-z,relro' 'FC=gfortran' 'F77=gfortran' 'MPILIBNAME=mpich' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines configure: ===== done with src/openpa configure ===== sourcing /<>/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... unknown checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) works... yes checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for Fortran 2008 support... no checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) works... yes checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... unknown checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 2 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... no checking whether install works... yes checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... no checking whether make allows comments in actions... no configure: WARNING: Your make does not allow comments in target code. Using this make may cause problems when building programs. You should consider using gnumake instead. checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 0 checking for size of Fortran type real... 0 checking for size of Fortran type double precision... 0 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes configure: error: Unable to configure with Fortran support because configure could not determine the size of a Fortran INTEGER. Consider setting CROSS_F77_SIZEOF_INTEGER to the length in bytes of a Fortran INTEGER "tail -v -n +0 config.log" ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MPICH configure 3.2, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-shared --prefix=/usr --enable-fortran=all --disable-rpath --disable-wrapper-rpath --sysconfdir=/etc/mpich --libdir=/usr/lib/x86_64-linux-gnu --includedir=/usr/include/mpich --docdir=/usr/share/doc/mpich --with-hwloc-prefix=system --enable-checkpointing --with-hydra-ckpointlib=blcr CPPFLAGS= CFLAGS= CXXFLAGS= FFLAGS= FCFLAGS= ## --------- ## ## Platform. ## ## --------- ## hostname = ip-172-31-36-99 uname -m = x86_64 uname -r = 4.9.0-2-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.18-1 (2017-03-30) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:5211: checking for icc configure:5241: result: no configure:5211: checking for pgcc configure:5241: result: no configure:5211: checking for xlc configure:5241: result: no configure:5211: checking for xlC configure:5241: result: no configure:5211: checking for pathcc configure:5241: result: no configure:5211: checking for gcc configure:5227: found /usr/bin/gcc configure:5238: result: gcc configure:5269: checking for C compiler version configure:5278: gcc --version >&5 clang version 3.9.1-10 (tags/RELEASE_391/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:5289: $? = 0 configure:5278: gcc -v >&5 clang version 3.9.1-10 (tags/RELEASE_391/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.1.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.4.0 ... rest of stderr output deleted ... configure:5289: $? = 0 configure:5278: gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:5289: $? = 1 configure:5278: gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:5289: $? = 1 configure:5309: checking whether the C compiler works configure:5331: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c >&5 configure:5335: $? = 0 configure:5383: result: yes configure:5386: checking for C compiler default output file name configure:5388: result: a.out configure:5394: checking for suffix of executables configure:5401: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c >&5 configure:5405: $? = 0 configure:5427: result: configure:5449: checking whether we are cross compiling configure:5457: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c >&5 configure:5461: $? = 0 configure:5468: ./conftest configure:5472: $? = 0 configure:5487: result: no configure:5492: checking for suffix of object files configure:5514: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5518: $? = 0 configure:5539: result: o configure:5543: checking whether we are using the GNU C compiler configure:5562: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5562: $? = 0 configure:5571: result: yes configure:5580: checking whether gcc accepts -g configure:5600: gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5600: $? = 0 configure:5641: result: yes configure:5658: checking for gcc option to accept ISO C89 configure:5721: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5721: $? = 0 configure:5734: result: none needed configure:5759: checking whether gcc understands -c and -o together configure:5781: gcc -c conftest.c -o conftest2.o configure:5784: $? = 0 configure:5781: gcc -c conftest.c -o conftest2.o configure:5784: $? = 0 configure:5796: result: yes configure:5831: checking how to run the C preprocessor configure:5862: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5862: $? = 0 configure:5876: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:5876: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | /* end confdefs.h. */ | #include configure:5901: result: gcc -E configure:5921: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5921: $? = 0 configure:5935: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:5935: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | /* end confdefs.h. */ | #include configure:5995: checking for a BSD-compatible install configure:6063: result: /usr/bin/install -c configure:6074: checking whether build environment is sane configure:6129: result: yes configure:6277: checking for a thread-safe mkdir -p configure:6316: result: /bin/mkdir -p configure:6323: checking for gawk configure:6339: found /usr/bin/gawk configure:6350: result: gawk configure:6361: checking whether make sets $(MAKE) configure:6383: result: yes configure:6413: checking for style of include used by make configure:6441: result: GNU configure:6475: checking whether make supports nested variables configure:6492: result: yes configure:6577: checking dependency style of gcc configure:6688: result: none configure:6747: checking whether to enable maintainer-specific portions of Makefiles configure:6756: result: no configure:6820: checking for ar configure:6836: found /usr/bin/ar configure:6847: result: ar configure:6873: checking the archiver (ar) interface configure:6889: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6889: $? = 0 configure:6891: ar cru libconftest.a conftest.o >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:6894: $? = 0 configure:6922: result: ar configure:6972: checking build system type configure:6986: result: x86_64-pc-linux-gnu configure:7006: checking host system type configure:7019: result: x86_64-pc-linux-gnu configure:7060: checking how to print strings configure:7087: result: printf configure:7108: checking for a sed that does not truncate output configure:7172: result: /bin/sed configure:7190: checking for grep that handles long lines and -e configure:7248: result: /bin/grep configure:7253: checking for egrep configure:7315: result: /bin/grep -E configure:7320: checking for fgrep configure:7382: result: /bin/grep -F configure:7417: checking for ld used by gcc configure:7484: result: /usr/bin/ld configure:7491: checking if the linker (/usr/bin/ld) is GNU ld configure:7506: result: yes configure:7518: checking for BSD- or MS-compatible name lister (nm) configure:7572: result: /usr/bin/nm -B configure:7702: checking the name lister (/usr/bin/nm -B) interface configure:7709: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:7712: /usr/bin/nm -B "conftest.o" configure:7715: output 0000000000000000 B some_variable configure:7722: result: BSD nm configure:7725: checking whether ln -s works configure:7729: result: yes configure:7737: checking the maximum length of command line arguments configure:7868: result: 1572864 configure:7916: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:7956: result: func_convert_file_noop configure:7963: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:7983: result: func_convert_file_noop configure:7990: checking for /usr/bin/ld option to reload object files configure:7997: result: -r configure:8071: checking for objdump configure:8087: found /usr/bin/objdump configure:8098: result: objdump configure:8130: checking how to recognize dependent libraries configure:8330: result: pass_all configure:8415: checking for dlltool configure:8445: result: no configure:8475: checking how to associate runtime and link libraries configure:8502: result: printf %s\n configure:8626: checking for archiver @FILE support configure:8643: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:8643: $? = 0 configure:8646: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:8649: $? = 0 configure:8654: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') ar: conftest.o: No such file or directory configure:8657: $? = 1 configure:8669: result: @ configure:8727: checking for strip configure:8743: found /usr/bin/strip configure:8754: result: strip configure:8826: checking for ranlib configure:8842: found /usr/bin/ranlib configure:8853: result: ranlib configure:8955: checking command to parse /usr/bin/nm -B output from gcc object configure:9108: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9111: $? = 0 configure:9115: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:9118: $? = 0 configure:9184: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c conftstm.o >&5 configure:9187: $? = 0 configure:9225: result: ok configure:9272: checking for sysroot configure:9302: result: no configure:9309: checking for a working dd configure:9347: result: /bin/dd configure:9351: checking how to truncate binary pipes configure:9366: result: /bin/dd bs=4096 count=1 configure:9502: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9505: $? = 0 configure:9695: checking for mt configure:9725: result: no configure:9745: checking if : is a manifest tool configure:9751: : '-?' configure:9759: result: no configure:10432: checking for ANSI C header files configure:10452: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10452: $? = 0 configure:10525: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c >&5 configure:10525: $? = 0 configure:10525: ./conftest configure:10525: $? = 0 configure:10536: result: yes configure:10549: checking for sys/types.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for sys/stat.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for stdlib.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for string.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for memory.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for strings.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for inttypes.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for stdint.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10549: checking for unistd.h configure:10549: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10549: $? = 0 configure:10549: result: yes configure:10563: checking for dlfcn.h configure:10563: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:10563: $? = 0 configure:10563: result: yes configure:10819: checking for objdir configure:10834: result: .libs configure:11098: checking if gcc supports -fno-rtti -fno-exceptions configure:11116: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fno-rtti -fno-exceptions conftest.c >&5 configure:11120: $? = 0 configure:11133: result: yes configure:11491: checking for gcc option to produce PIC configure:11498: result: -fPIC -DPIC configure:11506: checking if gcc PIC flag -fPIC -DPIC works configure:11524: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPIC -DPIC conftest.c >&5 configure:11528: $? = 0 configure:11541: result: yes configure:11570: checking if gcc static flag -static works configure:11598: result: yes configure:11613: checking if gcc supports -c -o file.o configure:11634: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o out/conftest2.o conftest.c >&5 configure:11638: $? = 0 configure:11660: result: yes configure:11668: checking if gcc supports -c -o file.o configure:11715: result: yes configure:11748: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13011: result: yes configure:13048: checking whether -lc should be explicitly linked in configure:13056: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:13059: $? = 0 configure:13074: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:13077: $? = 0 configure:13091: result: no configure:13251: checking dynamic linker characteristics configure:13832: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-rpath -Wl,/foo conftest.c >&5 configure:13832: $? = 0 configure:14081: result: GNU/Linux ld.so configure:14203: checking how to hardcode library paths into programs configure:14228: result: immediate configure:14776: checking whether stripping libraries is possible configure:14781: result: yes configure:14816: checking if libtool supports shared libraries configure:14818: result: yes configure:14821: checking whether to build shared libraries configure:14846: result: yes configure:14849: checking whether to build static libraries configure:14853: result: yes configure:14902: checking whether make supports nested variables configure:14919: result: yes configure:15022: checking for icpc configure:15052: result: no configure:15022: checking for pgCC configure:15052: result: no configure:15022: checking for xlC configure:15052: result: no configure:15022: checking for pathCC configure:15052: result: no configure:15022: checking for g++ configure:15038: found /usr/bin/g++ configure:15049: result: g++ configure:15076: checking for C++ compiler version configure:15085: g++ --version >&5 clang version 3.9.1-10 (tags/RELEASE_391/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:15096: $? = 0 configure:15085: g++ -v >&5 clang version 3.9.1-10 (tags/RELEASE_391/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.1.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.4.0 ... rest of stderr output deleted ... configure:15096: $? = 0 configure:15085: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:15096: $? = 1 configure:15085: g++ -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:15096: $? = 1 configure:15100: checking whether we are using the GNU C++ compiler configure:15119: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:15119: $? = 0 configure:15128: result: yes configure:15137: checking whether g++ accepts -g configure:15157: g++ -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:15157: $? = 0 configure:15198: result: yes configure:15223: checking dependency style of g++ configure:15334: result: none configure:15367: checking how to run the C++ preprocessor configure:15394: g++ -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp configure:15394: $? = 0 configure:15408: g++ -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp conftest.cpp:23:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:15408: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15433: result: g++ -E configure:15453: g++ -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp configure:15453: $? = 0 configure:15467: g++ -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp conftest.cpp:23:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:15467: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15629: checking for ld used by g++ configure:15696: result: /usr/bin/ld -m elf_x86_64 configure:15703: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:15718: result: yes configure:15773: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16846: result: yes configure:16882: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:16885: $? = 0 configure:17366: checking for g++ option to produce PIC configure:17373: result: -fPIC -DPIC configure:17381: checking if g++ PIC flag -fPIC -DPIC works configure:17399: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:17403: $? = 0 configure:17416: result: yes configure:17439: checking if g++ static flag -static works configure:17467: result: yes configure:17479: checking if g++ supports -c -o file.o configure:17500: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o out/conftest2.o conftest.cpp >&5 configure:17504: $? = 0 configure:17526: result: yes configure:17531: checking if g++ supports -c -o file.o configure:17578: result: yes configure:17608: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:17651: result: yes configure:17792: checking dynamic linker characteristics configure:18549: result: GNU/Linux ld.so configure:18614: checking how to hardcode library paths into programs configure:18639: result: immediate configure:18788: checking for Fortran compiler version configure:18797: gfortran --version >&5 GNU Fortran (Debian 6.4.0-1) 6.4.0 20170704 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:18808: $? = 0 configure:18797: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.4.0-1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.4.0 20170704 (Debian 6.4.0-1) configure:18808: $? = 0 configure:18797: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:18808: $? = 1 configure:18797: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:18808: $? = 1 configure:18817: checking whether we are using the GNU Fortran compiler configure:18830: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.F >&5 configure:18830: $? = 0 configure:18839: result: yes configure:18845: checking whether gfortran accepts -g configure:18856: gfortran -c -g conftest.f >&5 configure:18856: $? = 0 configure:18864: result: yes configure:18996: checking if libtool supports shared libraries configure:18998: result: yes configure:19001: checking whether to build shared libraries configure:19025: result: yes configure:19028: checking whether to build static libraries configure:19032: result: yes configure:19066: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f >&5 configure:19069: $? = 0 configure:19529: checking for gfortran option to produce PIC configure:19536: result: -fPIC configure:19544: checking if gfortran PIC flag -fPIC works configure:19562: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC conftest.f >&5 configure:19566: $? = 0 configure:19579: result: yes configure:19602: checking if gfortran static flag -static works configure:19630: result: yes configure:19642: checking if gfortran supports -c -o file.o configure:19663: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -o out/conftest2.o conftest.f >&5 configure:19667: $? = 0 configure:19689: result: yes configure:19694: checking if gfortran supports -c -o file.o configure:19741: result: yes configure:19771: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:20984: result: yes configure:21125: checking dynamic linker characteristics configure:21876: result: GNU/Linux ld.so configure:21941: checking how to hardcode library paths into programs configure:21966: result: immediate configure:22161: checking for Fortran 77 compiler version configure:22170: gfortran --version >&5 GNU Fortran (Debian 6.4.0-1) 6.4.0 20170704 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:22181: $? = 0 configure:22170: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.4.0-1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.4.0 20170704 (Debian 6.4.0-1) configure:22181: $? = 0 configure:22170: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:22181: $? = 1 configure:22170: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:22181: $? = 1 configure:22190: checking whether we are using the GNU Fortran 77 compiler configure:22203: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.F >&5 configure:22203: $? = 0 configure:22212: result: yes configure:22218: checking whether gfortran accepts -g configure:22229: gfortran -c -g conftest.f >&5 configure:22229: $? = 0 configure:22237: result: yes configure:22366: checking if libtool supports shared libraries configure:22368: result: yes configure:22371: checking whether to build shared libraries configure:22395: result: yes configure:22398: checking whether to build static libraries configure:22402: result: yes configure:22754: checking for gfortran option to produce PIC configure:22761: result: -fPIC configure:22769: checking if gfortran PIC flag -fPIC works configure:22787: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC conftest.f >&5 configure:22791: $? = 0 configure:22804: result: yes configure:22827: checking if gfortran static flag -static works configure:22855: result: yes configure:22867: checking if gfortran supports -c -o file.o configure:22888: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -o out/conftest2.o conftest.f >&5 configure:22892: $? = 0 configure:22914: result: yes configure:22919: checking if gfortran supports -c -o file.o configure:22966: result: yes configure:22996: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:24209: result: yes configure:24350: checking dynamic linker characteristics configure:25101: result: GNU/Linux ld.so configure:25166: checking how to hardcode library paths into programs configure:25191: result: immediate configure:26331: checking hcoll/api/hcoll_api.h usability configure:26331: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c:56:10: fatal error: 'hcoll/api/hcoll_api.h' file not found #include ^ 1 error generated. configure:26331: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:26331: result: no configure:26331: checking hcoll/api/hcoll_api.h presence configure:26331: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:23:10: fatal error: 'hcoll/api/hcoll_api.h' file not found #include ^ 1 error generated. configure:26331: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:26331: result: no configure:26331: checking for hcoll/api/hcoll_api.h configure:26331: result: no configure:26339: checking for hcoll_init in -lhcoll configure:26364: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro conftest.c -lhcoll >&5 /usr/bin/ld: cannot find -lhcoll clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:26364: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char hcoll_init (); | int | main () | { | return hcoll_init (); | ; | return 0; | } configure:26373: result: no configure:26769: RUNNING PREREQ FOR ch3:nemesis configure:27301: ===== configuring src/mpl ===== configure:27466: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' --disable-versioning '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--libexecdir=${prefix}/lib/x86_64-linux-gnu' '--disable-maintainer-mode' '--disable-dependency-tracking' '--enable-shared' '--enable-fortran=all' '--disable-rpath' '--disable-wrapper-rpath' '--sysconfdir=/etc/mpich' '--libdir=/usr/lib/x86_64-linux-gnu' '--includedir=/usr/include/mpich' '--docdir=/usr/share/doc/mpich' '--with-hwloc-prefix=system' '--enable-checkpointing' '--with-hydra-ckpointlib=blcr' 'CPPFLAGS= -Wdate-time -D_FORTIFY_SOURCE=2' 'CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ' 'CXXFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'FFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'FCFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'build_alias=x86_64-linux-gnu' 'MPICHLIB_CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'MPICHLIB_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'MPICHLIB_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'LDFLAGS=-Wl,-z,relro' 'FC=gfortran' 'F77=gfortran' 'MPILIBNAME=mpich' --cache-file=/dev/null --srcdir=. configure:27486: ===== done with src/mpl configure ===== configure:27492: sourcing src/mpl/localdefs CPPFLAGS(=' -Wdate-time -D_FORTIFY_SOURCE=2') does not contain '-I/<>/src/mpl/include', appending CPPFLAGS(=' -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include') does not contain '-I/<>/src/mpl/include', appending LIBS(='') does not contain '-lopa', prepending configure:27609: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -Wl,-z,relro conftest.c -lopa >&5 conftest.c:26:10: fatal error: 'opa_primitives.h' file not found #include "opa_primitives.h" ^ 1 error generated. configure:27609: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | /* end confdefs.h. */ | #include "opa_primitives.h" | | int | main () | { | | OPA_int_t i; | OPA_store_int(i,10); | OPA_fetch_and_incr_int(&i,5); | | ; | return 0; | } CPPFLAGS(=' -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include') does not contain '-I/<>/src/openpa/src', appending CPPFLAGS(=' -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src') does not contain '-I/<>/src/openpa/src', appending opa_subdir_args(='--disable-versioning') does not contain '--with-atomic-primitives=auto_allow_emulation', appending configure:27683: ===== configuring src/openpa ===== configure:27848: running /bin/bash ./configure --disable-option-checking '--prefix=/usr' --disable-versioning --with-atomic-primitives=auto_allow_emulation '--build=x86_64-linux-gnu' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--libexecdir=${prefix}/lib/x86_64-linux-gnu' '--disable-maintainer-mode' '--disable-dependency-tracking' '--enable-shared' '--enable-fortran=all' '--disable-rpath' '--disable-wrapper-rpath' '--sysconfdir=/etc/mpich' '--libdir=/usr/lib/x86_64-linux-gnu' '--includedir=/usr/include/mpich' '--docdir=/usr/share/doc/mpich' '--with-hwloc-prefix=system' '--enable-checkpointing' '--with-hydra-ckpointlib=blcr' 'CPPFLAGS= -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src' 'CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ' 'CXXFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'FFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'FCFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'build_alias=x86_64-linux-gnu' 'MPICHLIB_CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'MPICHLIB_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' 'MPICHLIB_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'MPICHLIB_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' 'LDFLAGS=-Wl,-z,relro' 'FC=gfortran' 'F77=gfortran' 'MPILIBNAME=mpich' --cache-file=/dev/null --srcdir=. configure:27868: ===== done with src/openpa configure ===== CPPFLAGS(=' -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src') does not contain '-D_REENTRANT', appending CPPFLAGS(=' -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT') does not contain '-I/<>/src/mpi/romio/include', appending configure:28603: checking whether the compiler defines __func__ configure:28630: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:28630: $? = 0 configure:28630: ./conftest configure:28630: $? = 0 configure:28667: result: yes configure:28676: checking whether the compiler defines __FUNC__ configure:28703: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 conftest.c:39:20: error: use of undeclared identifier '__FUNC__' return (strcmp(__FUNC__, "foo") == 0); ^ conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' conftest.c:39:20: error: use of undeclared identifier '__FUNC__' fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. configure:28703: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | /* end confdefs.h. */ | | | #include | int foo(void); | int foo(void) | { | return (strcmp(__FUNC__, "foo") == 0); | } | int main(int argc, char ** argv) | { | return (foo() ? 0 : 1); | } | | configure:28740: result: no configure:28749: checking whether the compiler sets __FUNCTION__ configure:28776: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:28776: $? = 0 configure:28776: ./conftest configure:28776: $? = 0 configure:28813: result: yes configure:28828: checking whether C compiler accepts option -O2 configure:28883: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c > pac_test1.log 2>&1 configure:28883: $? = 0 configure:28914: gcc -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c > pac_test2.log 2>&1 configure:28914: $? = 0 configure:28922: diff -b pac_test1.log pac_test2.log > pac_test.log configure:28925: $? = 0 configure:29025: result: yes configure:29041: checking whether C compiler option -O2 works with an invalid prototype program configure:29049: gcc -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:29049: $? = 0 configure:29056: result: yes configure:29061: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:29101: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c > pac_test3.log 2>&1 configure:29101: $? = 0 configure:29105: mv conftest.o pac_conftest.o configure:29108: $? = 0 configure:29151: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c pac_conftest.o > pac_test4.log 2>&1 configure:29151: $? = 0 configure:29193: gcc -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c pac_conftest.o > pac_test5.log 2>&1 configure:29193: $? = 0 configure:29201: diff -b pac_test4.log pac_test5.log > pac_test.log configure:29204: $? = 0 configure:29343: result: yes configure:29376: checking for type of weak symbol alias support configure:29400: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 conftest.c:42:8: error: call to 'PFoo' is ambiguous return PFoo(1); ^~~~ conftest.c:35:12: note: candidate function extern int PFoo(int); ^ conftest.c:36:14: note: candidate function #pragma weak PFoo = Foo ^ 1 error generated. configure:29400: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | | extern int PFoo(int); | #pragma weak PFoo = Foo | int Foo(int a) { return a; } | | int | main () | { | return PFoo(1); | ; | return 0; | } configure:29647: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 /tmp/conftest-a19cda.o: In function `main': ./conftest.c:42: undefined reference to `PFoo' clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:29647: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | | extern int PFoo(int); | #pragma _HP_SECONDARY_DEF Foo PFoo | int Foo(int a) { return a; } | | int | main () | { | return PFoo(1); | ; | return 0; | } configure:29669: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 /tmp/conftest-56e808.o: In function `main': ./conftest.c:42: undefined reference to `PFoo' clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:29669: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | | extern int PFoo(int); | #pragma _CRI duplicate PFoo as Foo | int Foo(int a) { return a; } | | int | main () | { | return PFoo(1); | ; | return 0; | } configure:29683: result: no configure:29701: checking whether __attribute__ ((weak)) allowed configure:29718: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:29718: $? = 0 configure:29725: result: yes configure:29729: checking whether __attribute__ ((weak_import)) allowed configure:29746: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:29746: $? = 0 configure:29753: result: yes configure:29756: checking whether __attribute__((weak,alias(...))) allowed configure:29782: gcc -c -Werror -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:29782: $? = 0 configure:29795: result: yes configure:29977: checking for shared library (esp. rpath) characteristics of CC configure:30068: result: done (results in src/env/cc_shlib.conf) configure:30188: checking whether Fortran 77 compiler accepts option -O2 configure:30233: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f > pac_test1.log 2>&1 configure:30233: $? = 0 configure:30264: gfortran -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f > pac_test2.log 2>&1 configure:30264: $? = 0 configure:30272: diff -b pac_test1.log pac_test2.log > pac_test.log configure:30275: $? = 0 configure:30375: result: yes configure:30380: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:30419: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f > pac_test3.log 2>&1 configure:30419: $? = 0 configure:30423: mv conftest.o pac_conftest.o configure:30426: $? = 0 configure:30464: gfortran -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f pac_conftest.o > pac_test4.log 2>&1 configure:30464: $? = 0 configure:30472: diff -b pac_test2.log pac_test4.log > pac_test.log configure:30475: $? = 0 configure:30576: result: yes configure:30614: checking how to get verbose linking output from gfortran configure:30624: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:30624: $? = 0 configure:30642: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -v -Wl,-z,relro conftest.f Using built-in specs. Target: x86_64-linux-gnu Thread model: posix gcc version 6.4.0 20170704 (Debian 6.4.0-1) /usr/lib/gcc/x86_64-linux-gnu/6/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -O2 -version -fdebug-prefix-map=/<>=. -fstack-protector-strong -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/6/finclude -o /tmp/ccjkmXEm.s GNU Fortran (Debian 6.4.0-1) version 6.4.0 20170704 (x86_64-linux-gnu) compiled by GNU C version 6.4.0 20170704, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3, isl version 0.15 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (Debian 6.4.0-1) version 6.4.0 20170704 (x86_64-linux-gnu) compiled by GNU C version 6.4.0 20170704, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3, isl version 0.15 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -v --64 -o /tmp/ccJnveT0.o /tmp/ccjkmXEm.s GNU assembler version 2.28 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.28 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/6/libgfortran.spec rename spec lib to liborig /usr/lib/gcc/x86_64-linux-gnu/6/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper -plugin-opt=-fresolution=/tmp/ccGBW57E.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o conftest /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -z relro /tmp/ccJnveT0.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o configure:30725: result: -v configure:30727: checking for Fortran 77 libraries of gfortran configure:30750: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -v -Wl,-z,relro conftest.f Using built-in specs. Target: x86_64-linux-gnu Thread model: posix gcc version 6.4.0 20170704 (Debian 6.4.0-1) /usr/lib/gcc/x86_64-linux-gnu/6/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -O2 -version -fdebug-prefix-map=/<>=. -fstack-protector-strong -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/6/finclude -o /tmp/ccpQIaxp.s GNU Fortran (Debian 6.4.0-1) version 6.4.0 20170704 (x86_64-linux-gnu) compiled by GNU C version 6.4.0 20170704, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3, isl version 0.15 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (Debian 6.4.0-1) version 6.4.0 20170704 (x86_64-linux-gnu) compiled by GNU C version 6.4.0 20170704, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3, isl version 0.15 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -v --64 -o /tmp/cc1keES3.o /tmp/ccpQIaxp.s GNU assembler version 2.28 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.28 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/6/libgfortran.spec rename spec lib to liborig /usr/lib/gcc/x86_64-linux-gnu/6/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwMXIeI.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o conftest /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -z relro /tmp/cc1keES3.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o configure:30946: result: -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lgfortran -lm -lquadmath configure:30962: checking whether gfortran accepts the FLIBS found by autoconf configure:30978: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f >&5 configure:30978: $? = 0 configure:30980: result: yes configure:31018: checking whether gcc links with FLIBS found by autoconf configure:31043: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lgfortran -lm -lquadmath >&5 configure:31043: $? = 0 configure:31045: result: yes configure:31095: checking whether Fortran 77 and C objects are compatible configure:31174: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:31174: $? = 0 configure:31177: mv conftest.o pac_conftest.o configure:31180: $? = 0 configure:31189: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o >&5 configure:31189: $? = 0 configure:31192: result: yes configure:31351: checking for linker for Fortran main program configure:31372: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:31372: $? = 0 configure:31431: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:31431: $? = 0 configure:31434: mv conftest.o pac_conftest.o configure:31437: $? = 0 configure:31446: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o >&5 configure:31446: $? = 0 configure:31448: result: Use Fortran to link programs configure:31559: checking for Fortran 77 name mangling configure:31581: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:31581: $? = 0 configure:31584: mv conftest.o f77conftest.o configure:31587: $? = 0 configure:31612: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c f77conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lgfortran -lm -lquadmath >&5 configure:31612: $? = 0 configure:31735: result: lower uscore configure:31801: checking for libraries to link Fortran main with C stdio routines configure:31827: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:31827: $? = 0 configure:31830: mv conftest.o pac_conftest.o configure:31833: $? = 0 configure:31852: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o >&5 /usr/bin/ld: pac_conftest.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status configure:31852: $? = 1 configure: failed program was: | | | program main | call conf1(0) | end | | configure:31852: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o -lSystemStubs >&5 /usr/bin/ld: cannot find -lSystemStubs collect2: error: ld returned 1 exit status configure:31852: $? = 1 configure: failed program was: | | | program main | call conf1(0) | end | | configure:31883: result: unknown configure:31934: checking whether Fortran init will work with C configure:31956: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:31956: $? = 0 configure:31959: mv conftest.o pac_f77conftest.o configure:31962: $? = 0 configure:32006: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c pac_f77conftest.o >&5 configure:32006: $? = 0 configure:32029: result: yes configure:32128: checking for extension for Fortran 90 programs configure:32143: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f90 >&5 configure:32143: $? = 0 configure:32145: result: f90 configure:32187: checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) works configure:32198: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 >&5 configure:32198: $? = 0 configure:32201: result: yes configure:32203: checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) is a cross-compiler configure:32209: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 >&5 configure:32209: $? = 0 configure:32209: ./conftest configure:32209: $? = 0 configure:32218: result: no configure:32241: checking whether Fortran 90 compiler works with Fortran 77 compiler configure:32269: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:32269: $? = 0 configure:32273: mv conftest.o pac_f77conftest.o configure:32276: $? = 0 configure:32297: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 pac_f77conftest.o >&5 configure:32297: $? = 0 configure:32339: result: yes configure:32401: checking for shared library (esp. rpath) characteristics of F77 configure:32494: result: done (results in src/env/f77_shlib.conf) configure:32505: checking whether Fortran 77 accepts ! for comments configure:32523: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:32523: $? = 0 configure:32540: result: yes configure:32550: checking for include directory flag for Fortran configure:32577: gfortran -c -I src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:32577: $? = 0 configure:32595: result: -I configure:32603: checking for Fortran 77 flag for library directories configure:32622: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:32622: $? = 0 configure:32626: mv conftest.o pac_f77conftest.o configure:32629: $? = 0 configure:32632: test -d conftestdir || mkdir conftestdir configure:32635: $? = 0 configure:32638: ar cru conftestdir/libf77conftest.a pac_f77conftest.o ar: `u' modifier ignored since `D' is the default (see `U') configure:32641: $? = 0 configure:32644: ranlib conftestdir/libf77conftest.a configure:32647: $? = 0 configure:32665: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Lconftestdir -Wl,-z,relro conftest.f -lf77conftest >&5 configure:32665: $? = 0 configure:32685: result: -L configure:32761: checking whether Fortran 77 compiler processes .F files with C preprocessor configure:32782: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.F >&5 configure:32782: $? = 0 configure:32850: result: yes configure:32858: checking whether gfortran allows mismatched arguments configure:32881: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:32881: $? = 0 configure:32925: result: yes configure:32971: checking for Fortran 2008 support configure:32997: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:46:10: fatal error: 'ISO_Fortran_binding.h' file not found #include ^ 1 error generated. configure:32997: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | /* end confdefs.h. */ | | | #include | | int foo_c(CFI_cdesc_t * a_desc, CFI_cdesc_t * b_desc) | { | char * a_row = (char*) a_desc->base_addr; | if (a_desc->type != CFI_type_int) { return 1; } | if (a_desc->rank != 2) { return 2; } | if (a_desc->dim[1].extent != b_desc->dim[0].extent) { return 3; } | return 0; | } | configure:33093: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 conftest1.o >&5 gfortran: error: conftest1.o: No such file or directory configure:33093: $? = 1 configure: failed program was: | | | MODULE F08TS_MODULE | IMPLICIT NONE | | ! Test public, private, protected | REAL, PUBLIC :: x | REAL, PRIVATE :: y | LOGICAL, PROTECTED :: z | | ! Test abstract | ABSTRACT INTERFACE | SUBROUTINE user_func(x, y) | INTEGER :: x(*) | REAL :: y | END SUBROUTINE | END INTERFACE | | ! Test TS 29113 assumed type , assumed rank and bind(C) | INTERFACE | FUNCTION FOO(A, B, C) & | BIND(C,name="foo_c") RESULT(err) | USE, intrinsic :: iso_c_binding, ONLY : c_int | TYPE(*), DIMENSION(..) :: A, B, C | INTEGER(c_int) :: err | END FUNCTION FOO | END INTERFACE | | CONTAINS | | ! Test TS 29113 asychronous attribute and optional | SUBROUTINE test1(buf, count, ierr) | INTEGER, ASYNCHRONOUS :: buf(*) | INTEGER :: count | INTEGER, OPTIONAL :: ierr | END SUBROUTINE | | ! Test procedure type and non-bind(c) x in C_FUNCLOC(x) | SUBROUTINE test2(func) | USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_FUNLOC, C_FUNPTR | PROCEDURE(user_func) :: func | TYPE(C_FUNPTR) :: errhandler_fn | errhandler_fn = C_FUNLOC(func) | END SUBROUTINE | | ! Test intrinsic storage_size | SUBROUTINE test3(x, size) | CHARACTER, DIMENSION(..) :: x | INTEGER, INTENT(OUT) :: size | size = storage_size(x)/8 | END SUBROUTINE test3 | | END MODULE | | !============================================== | PROGRAM MAIN | USE :: F08TS_MODULE, ONLY : FOO | IMPLICIT NONE | | INTEGER, DIMENSION(4,4) :: A, B | INTEGER, DIMENSION(2,2) :: C | INTEGER :: ERRCODE | | ! Test contiguous and non-contiguous array section passing | ! and linkage with C code | ERRCODE = FOO(A(1:4:2, :), B(:, 2:4:2), C) | | END PROGRAM | configure:33117: result: no configure:33182: checking for shared library (esp. rpath) characteristics of FC configure:33275: result: done (results in src/env/fc_shlib.conf) configure:33291: checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) works configure:33302: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 >&5 configure:33302: $? = 0 configure:33305: result: yes configure:33307: checking whether the Fortran 90 compiler (gfortran -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro) is a cross-compiler configure:33313: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 >&5 configure:33313: $? = 0 configure:33313: ./conftest configure:33313: $? = 0 configure:33322: result: no configure:33368: checking for Fortran 90 module extension configure:33390: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f90 >&5 configure:33390: $? = 0 configure:33486: result: mod configure:33498: checking for Fortran 90 module include flag configure:33526: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f90 >&5 configure:33526: $? = 0 configure:33563: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Iconftestdir conftest.f90 >&5 configure:33563: $? = 0 configure:33622: result: -I configure:33630: checking for Fortran 90 module output directory flag configure:33661: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f90 >&5 configure:33661: $? = 0 configure:33715: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Jconftestdir conftest.f90 >&5 configure:33715: $? = 0 configure:33755: result: -J configure:33826: checking whether Fortran 90 compiler accepts option -O2 configure:33871: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 > pac_test1.log 2>&1 configure:33871: $? = 0 configure:33902: gfortran -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 > pac_test2.log 2>&1 configure:33902: $? = 0 configure:33910: diff -b pac_test1.log pac_test2.log > pac_test.log configure:33913: $? = 0 configure:34013: result: yes configure:34018: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:34057: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong conftest.f90 > pac_test3.log 2>&1 configure:34057: $? = 0 configure:34061: mv conftest.o pac_conftest.o configure:34064: $? = 0 configure:34102: gfortran -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro conftest.f90 pac_conftest.o > pac_test4.log 2>&1 configure:34102: $? = 0 configure:34110: diff -b pac_test2.log pac_test4.log > pac_test.log configure:34113: $? = 0 configure:34214: result: yes configure:34246: checking whether Fortran 90 compiler processes .F90 files with C preprocessor configure:34267: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.F90 >&5 configure:34267: $? = 0 configure:34335: result: yes configure:34356: checking what libraries are needed to link Fortran90 programs with C routines that use stdio configure:34382: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:34382: $? = 0 configure:34386: mv conftest.o pac_conftest.o configure:34389: $? = 0 configure:34406: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f90 pac_conftest.o >&5 /usr/bin/ld: pac_conftest.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status configure:34406: $? = 1 configure: failed program was: | | program main | call conf1(0) | end | configure:34414: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f90 pac_conftest.o -lSystemStubs >&5 /usr/bin/ld: cannot find -lSystemStubs collect2: error: ld returned 1 exit status configure:34414: $? = 1 configure: failed program was: | | program main | call conf1(0) | end | configure:34447: result: unknown configure:34466: checking whether TRUE has been defined configure:34479: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:49:8: error: use of undeclared identifier 'TRUE' return TRUE; ^ 1 error generated. configure:34479: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | /* end confdefs.h. */ | | int | main () | { | return TRUE; | ; | return 0; | } configure:34485: result: no configure:34518: checking whether the C++ compiler g++ can build an executable configure:34547: g++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.cpp >&5 configure:34547: $? = 0 configure:34561: result: yes configure:34568: checking whether C++ compiler works with string configure:34591: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 configure:34591: $? = 0 configure:34604: result: yes configure:34617: checking whether the compiler supports exceptions configure:34640: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 configure:34640: $? = 0 configure:34654: result: yes configure:34662: checking whether the compiler recognizes bool as a built-in type configure:34689: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 configure:34689: $? = 0 configure:34703: result: yes configure:34711: checking whether the compiler implements namespaces configure:34734: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 configure:34734: $? = 0 configure:34748: result: yes configure:34765: checking whether available configure:34784: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 configure:34784: $? = 0 configure:34791: result: yes configure:34794: checking whether the compiler implements the namespace std configure:34821: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 configure:34821: $? = 0 configure:34836: result: yes configure:34845: checking whether available configure:34864: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp >&5 conftest.cpp:51:10: fatal error: 'math' file not found #include ^ 1 error generated. configure:34864: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | /* end confdefs.h. */ | | #include | | int | main () | { | using namespace std; | ; | return 0; | } configure:34871: result: no configure:34896: checking for GNU g++ version configure:34921: g++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.cpp >&5 configure:34921: $? = 0 configure:34921: ./conftest configure:34921: $? = 0 configure:34931: result: 4 . 2 configure:34987: checking for shared library (esp. rpath) characteristics of CXX configure:35080: result: done (results in src/env/cxx_shlib.conf) configure:35091: checking whether C++ compiler accepts option -O2 configure:35143: g++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.cpp > pac_test1.log 2>&1 configure:35143: $? = 0 configure:35174: g++ -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.cpp > pac_test2.log 2>&1 configure:35174: $? = 0 configure:35182: diff -b pac_test1.log pac_test2.log > pac_test.log configure:35185: $? = 0 configure:35285: result: yes configure:35290: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:35330: g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.cpp > pac_test3.log 2>&1 configure:35330: $? = 0 configure:35334: mv conftest.o pac_conftest.o configure:35337: $? = 0 configure:35381: g++ -o conftest -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.cpp pac_conftest.o > pac_test4.log 2>&1 configure:35381: $? = 0 configure:35389: diff -b pac_test2.log pac_test4.log > pac_test.log configure:35392: $? = 0 configure:35493: result: yes configure:35546: checking for perl configure:35564: found /usr/bin/perl configure:35576: result: /usr/bin/perl configure:35589: checking for ar configure:35616: result: ar configure:35652: checking for ranlib configure:35679: result: ranlib configure:35698: checking for killall configure:35728: result: no configure:35768: checking whether install works configure:35776: result: yes configure:35791: checking whether mkdir -p works configure:35807: result: yes configure:35825: checking for make configure:35841: found /usr/bin/make configure:35852: result: make configure:35866: checking whether clock skew breaks make configure:35891: result: no configure:35901: checking whether make supports include configure:35929: result: no configure:35938: checking whether make allows comments in actions configure:35965: result: no configure:35970: WARNING: Your make does not allow comments in target code. Using this make may cause problems when building programs. You should consider using gnumake instead. configure:35979: checking for virtual path format configure:36022: result: VPATH configure:36032: checking whether make sets CFLAGS configure:36058: result: yes configure:36107: checking for bash configure:36125: found /bin/bash configure:36137: result: /bin/bash configure:36160: checking whether /bin/bash supports arrays configure:36169: result: yes configure:36377: checking for doctext configure:36408: result: false configure:36421: checking for an ANSI C-conforming const configure:36487: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36487: $? = 0 configure:36494: result: yes configure:36502: checking for working volatile configure:36521: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36521: $? = 0 configure:36528: result: yes configure:36536: checking for C/C++ restrict keyword configure:36561: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36561: $? = 0 configure:36569: result: __restrict configure:36582: checking for inline configure:36598: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36598: $? = 0 configure:36606: result: inline configure:36629: checking whether __attribute__ allowed configure:36646: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36646: $? = 0 configure:36653: result: yes configure:36655: checking whether __attribute__((format)) allowed configure:36672: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36672: $? = 0 configure:36679: result: yes configure:36689: checking if C compiler supports __builtin_expect configure:36705: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:36705: $? = 0 configure:36708: result: yes configure:36740: checking whether byte ordering is bigendian configure:36755: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:56:9: error: unknown type name 'not' not a universal capable compiler ^ conftest.c:56:14: error: expected ';' after top level declarator not a universal capable compiler ^ ; 2 errors generated. configure:36755: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:36800: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:36800: $? = 0 configure:36818: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:62:4: error: use of undeclared identifier 'not' not big endian ^ 1 error generated. configure:36818: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:36946: result: no configure:36984: checking whether C compiler allows unaligned doubles configure:37017: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37017: $? = 0 configure:37017: ./conftest configure:37017: $? = 0 configure:37027: result: yes configure:37046: checking whether gcc supports __func__ configure:37062: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:37062: $? = 0 configure:37069: result: yes configure:37106: checking whether long double is supported configure:37123: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:37123: $? = 0 configure:37130: result: yes configure:37139: checking whether long long is supported configure:37156: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:37156: $? = 0 configure:37163: result: yes configure:37174: checking for max C struct integer alignment configure:37292: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37292: $? = 0 configure:37292: ./conftest configure:37292: $? = 0 configure:37304: result: eight configure:37335: checking for max C struct floating point alignment configure:37437: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37437: $? = 0 configure:37437: ./conftest configure:37437: $? = 0 configure:37449: result: sixteen configure:37482: checking for max C struct alignment of structs with doubles configure:37553: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37553: $? = 0 configure:37553: ./conftest configure:37553: $? = 0 configure:37565: result: eight configure:37572: checking for max C struct floating point alignment with long doubles configure:37644: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37644: $? = 0 configure:37644: ./conftest configure:37644: $? = 0 configure:37656: result: sixteen configure:37666: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. configure:37701: checking if alignment of structs with doubles is based on position configure:37735: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37735: $? = 0 configure:37735: ./conftest configure:37735: $? = 0 configure:37747: result: no configure:37763: checking if alignment of structs with long long ints is based on position configure:37799: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37799: $? = 0 configure:37799: ./conftest configure:37799: $? = 0 configure:37811: result: no configure:37827: checking if double alignment breaks rules, find actual alignment configure:37874: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37874: $? = 0 configure:37874: ./conftest configure:37874: $? = 0 configure:37886: result: no configure:37902: checking for alignment restrictions on pointers configure:37922: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37922: $? = 0 configure:37922: ./conftest configure:37922: $? = 0 configure:37939: result: int or better configure:37951: checking size of char configure:37956: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37956: $? = 0 configure:37956: ./conftest configure:37956: $? = 0 configure:37970: result: 1 configure:37984: checking size of unsigned char configure:37989: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:37989: $? = 0 configure:37989: ./conftest configure:37989: $? = 0 configure:38003: result: 1 configure:38017: checking size of short configure:38022: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38022: $? = 0 configure:38022: ./conftest configure:38022: $? = 0 configure:38036: result: 2 configure:38050: checking size of unsigned short configure:38055: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38055: $? = 0 configure:38055: ./conftest configure:38055: $? = 0 configure:38069: result: 2 configure:38083: checking size of int configure:38088: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38088: $? = 0 configure:38088: ./conftest configure:38088: $? = 0 configure:38102: result: 4 configure:38116: checking size of unsigned int configure:38121: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38121: $? = 0 configure:38121: ./conftest configure:38121: $? = 0 configure:38135: result: 4 configure:38149: checking size of long configure:38154: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38154: $? = 0 configure:38154: ./conftest configure:38154: $? = 0 configure:38168: result: 8 configure:38182: checking size of unsigned long configure:38187: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38187: $? = 0 configure:38187: ./conftest configure:38187: $? = 0 configure:38201: result: 8 configure:38215: checking size of long long configure:38220: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38220: $? = 0 configure:38220: ./conftest configure:38220: $? = 0 configure:38234: result: 8 configure:38248: checking size of unsigned long long configure:38253: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38253: $? = 0 configure:38253: ./conftest configure:38253: $? = 0 configure:38267: result: 8 configure:38281: checking size of float configure:38286: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38286: $? = 0 configure:38286: ./conftest configure:38286: $? = 0 configure:38300: result: 4 configure:38314: checking size of double configure:38319: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38319: $? = 0 configure:38319: ./conftest configure:38319: $? = 0 configure:38333: result: 8 configure:38347: checking size of long double configure:38352: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38352: $? = 0 configure:38352: ./conftest configure:38352: $? = 0 configure:38366: result: 16 configure:38380: checking size of void * configure:38385: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38385: $? = 0 configure:38385: ./conftest configure:38385: $? = 0 configure:38399: result: 8 configure:38410: checking for ANSI C header files configure:38514: result: yes configure:38524: checking stddef.h usability configure:38524: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38524: $? = 0 configure:38524: result: yes configure:38524: checking stddef.h presence configure:38524: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c configure:38524: $? = 0 configure:38524: result: yes configure:38524: checking for stddef.h configure:38524: result: yes configure:38538: checking size of wchar_t configure:38543: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38543: $? = 0 configure:38543: ./conftest configure:38543: $? = 0 configure:38562: result: 4 configure:38577: checking size of float_int configure:38582: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38582: $? = 0 configure:38582: ./conftest configure:38582: $? = 0 configure:38597: result: 8 configure:38611: checking size of double_int configure:38616: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38616: $? = 0 configure:38616: ./conftest configure:38616: $? = 0 configure:38631: result: 16 configure:38645: checking size of long_int configure:38650: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38650: $? = 0 configure:38650: ./conftest configure:38650: $? = 0 configure:38665: result: 16 configure:38679: checking size of short_int configure:38684: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38684: $? = 0 configure:38684: ./conftest configure:38684: $? = 0 configure:38699: result: 8 configure:38713: checking size of two_int configure:38718: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38718: $? = 0 configure:38718: ./conftest configure:38718: $? = 0 configure:38733: result: 8 configure:38747: checking size of long_double_int configure:38752: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38752: $? = 0 configure:38752: ./conftest configure:38752: $? = 0 configure:38767: result: 32 configure:38780: checking sys/bitypes.h usability configure:38780: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38780: $? = 0 configure:38780: result: yes configure:38780: checking sys/bitypes.h presence configure:38780: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c configure:38780: $? = 0 configure:38780: result: yes configure:38780: checking for sys/bitypes.h configure:38780: result: yes configure:38793: checking for inttypes.h configure:38793: result: yes configure:38793: checking for stdint.h configure:38793: result: yes configure:38805: checking for int8_t configure:38805: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38805: $? = 0 configure:38805: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:126:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:38805: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 8 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 1) | < (int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38805: result: yes configure:38816: checking for int16_t configure:38816: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38816: $? = 0 configure:38816: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:126:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:38816: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 16 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 1) | < (int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38816: result: yes configure:38827: checking for int32_t configure:38827: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38827: $? = 0 configure:38827: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:126:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:38827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 32 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) | < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38827: result: yes configure:38838: checking for int64_t configure:38838: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38838: $? = 0 configure:38838: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:126:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:38838: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 64 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) | < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38838: result: yes configure:38879: checking for uint8_t configure:38879: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38879: $? = 0 configure:38879: result: yes configure:38893: checking for uint16_t configure:38893: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38893: $? = 0 configure:38893: result: yes configure:38905: checking for uint32_t configure:38905: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38905: $? = 0 configure:38905: result: yes configure:38919: checking for uint64_t configure:38919: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38919: $? = 0 configure:38919: result: yes configure:38961: checking stdbool.h usability configure:38961: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38961: $? = 0 configure:38961: result: yes configure:38961: checking stdbool.h presence configure:38961: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c configure:38961: $? = 0 configure:38961: result: yes configure:38961: checking for stdbool.h configure:38961: result: yes configure:38961: checking complex.h usability configure:38961: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:38961: $? = 0 configure:38961: result: yes configure:38961: checking complex.h presence configure:38961: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c configure:38961: $? = 0 configure:38961: result: yes configure:38961: checking for complex.h configure:38961: result: yes configure:38975: checking size of _Bool configure:38980: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:38980: $? = 0 configure:38980: ./conftest configure:38980: $? = 0 configure:38999: result: 1 configure:39013: checking size of float _Complex configure:39018: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:39018: $? = 0 configure:39018: ./conftest configure:39018: $? = 0 configure:39037: result: 8 configure:39051: checking size of double _Complex configure:39056: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:39056: $? = 0 configure:39056: ./conftest configure:39056: $? = 0 configure:39075: result: 16 configure:39091: checking size of long double _Complex configure:39096: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include -Wl,-z,relro conftest.c >&5 configure:39096: $? = 0 configure:39096: ./conftest configure:39096: $? = 0 configure:39115: result: 32 configure:39130: checking for _Bool configure:39130: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39130: $? = 0 configure:39130: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:139:20: error: expected expression if (sizeof ((_Bool))) ^ 1 error generated. configure:39130: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:39130: result: yes configure:39139: checking for float _Complex configure:39139: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39139: $? = 0 configure:39139: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:140:29: error: expected expression if (sizeof ((float _Complex))) ^ 1 error generated. configure:39139: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((float _Complex))) | return 0; | ; | return 0; | } configure:39139: result: yes configure:39148: checking for double _Complex configure:39148: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39148: $? = 0 configure:39148: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:141:30: error: expected expression if (sizeof ((double _Complex))) ^ 1 error generated. configure:39148: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((double _Complex))) | return 0; | ; | return 0; | } configure:39148: result: yes configure:39161: checking for long double _Complex configure:39161: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39161: $? = 0 configure:39161: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 conftest.c:142:35: error: expected expression if (sizeof ((long double _Complex))) ^ 1 error generated. configure:39161: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define HAVE_WEAK_ATTRIBUTE 1 | #define USE_WEAK_SYMBOLS 1 | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_SYS_BITYPES_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((long double _Complex))) | return 0; | ; | return 0; | } configure:39161: result: yes configure:39581: checking for size of Fortran type integer configure:39622: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39622: $? = 0 configure:39626: mv conftest.o pac_conftest.o configure:39629: $? = 0 configure:39656: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o >&5 /usr/bin/ld: pac_conftest.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status configure:39656: $? = 1 configure: program exited with status 1 configure: failed program was: | | | program main | integer a(2) | integer irc, cisize | irc = cisize(a(1),a(2)) | end | | configure:39694: result: 0 configure:39709: checking for size of Fortran type real configure:39750: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39750: $? = 0 configure:39754: mv conftest.o pac_conftest.o configure:39757: $? = 0 configure:39784: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o >&5 /usr/bin/ld: pac_conftest.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status configure:39784: $? = 1 configure: program exited with status 1 configure: failed program was: | | | program main | real a(2) | integer irc, cisize | irc = cisize(a(1),a(2)) | end | | configure:39822: result: 0 configure:39837: checking for size of Fortran type double precision configure:39878: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include conftest.c >&5 configure:39878: $? = 0 configure:39882: mv conftest.o pac_conftest.o configure:39885: $? = 0 configure:39912: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 -Wl,-z,relro conftest.f pac_conftest.o >&5 /usr/bin/ld: pac_conftest.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status configure:39912: $? = 1 configure: program exited with status 1 configure: failed program was: | | | program main | double precision a(2) | integer irc, cisize | irc = cisize(a(1),a(2)) | end | | configure:39950: result: 0 configure:39973: checking whether integer*1 is supported configure:39984: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:39984: $? = 0 configure:39991: result: yes configure:39993: checking whether integer*2 is supported configure:40004: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40004: $? = 0 configure:40011: result: yes configure:40013: checking whether integer*4 is supported configure:40024: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40024: $? = 0 configure:40031: result: yes configure:40033: checking whether integer*8 is supported configure:40044: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40044: $? = 0 configure:40051: result: yes configure:40053: checking whether integer*16 is supported configure:40064: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40064: $? = 0 configure:40071: result: yes configure:40073: checking whether real*4 is supported configure:40084: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40084: $? = 0 configure:40091: result: yes configure:40093: checking whether real*8 is supported configure:40104: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40104: $? = 0 configure:40111: result: yes configure:40113: checking whether real*16 is supported configure:40124: gfortran -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2 conftest.f >&5 configure:40124: $? = 0 configure:40131: result: yes configure:40140: error: Unable to configure with Fortran support because configure could not determine the size of a Fortran INTEGER. 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ac_cv_prog_MAKE=make ac_cv_prog_RANLIB=ranlib ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_f77_v=-v ac_cv_prog_fc_g=yes ac_cv_prog_make_make_set=yes ac_cv_sizeof__Bool=1 ac_cv_sizeof_char=1 ac_cv_sizeof_double=8 ac_cv_sizeof_double__Complex=16 ac_cv_sizeof_double_int=16 ac_cv_sizeof_float=4 ac_cv_sizeof_float__Complex=8 ac_cv_sizeof_float_int=8 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_double__Complex=32 ac_cv_sizeof_long_double_int=32 ac_cv_sizeof_long_int=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_short=2 ac_cv_sizeof_short_int=8 ac_cv_sizeof_two_int=8 ac_cv_sizeof_unsigned_char=1 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=8 ac_cv_sizeof_unsigned_long_long=8 ac_cv_sizeof_unsigned_short=2 ac_cv_sizeof_void_p=8 ac_cv_sizeof_wchar_t=4 ac_cv_type__Bool=yes ac_cv_type_double__Complex=yes ac_cv_type_float__Complex=yes ac_cv_type_long_double__Complex=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_FC=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_compiler_static_works_FC=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' pac_cv_attr_weak=yes pac_cv_attr_weak_alias=yes pac_cv_attr_weak_import=yes pac_cv_c_double_alignment_exception=no pac_cv_c_double_pos_align=no pac_cv_c_fp_align_nr=16 pac_cv_c_llint_pos_align=no pac_cv_c_max_double_fp_align=eight pac_cv_c_max_fp_align=sixteen pac_cv_c_max_integer_align=eight pac_cv_c_max_longdouble_fp_align=sixteen pac_cv_c_struct_align_nr=8 pac_cv_cc_has___func__=yes pac_cv_cxx_builds_exe=yes pac_cv_cxx_compiles_string=yes pac_cv_cxx_has_iostream=yes pac_cv_cxx_has_math=no pac_cv_f77_accepts_F=yes pac_cv_f77_flibs_valid=unknown pac_cv_f77_sizeof_double_precision=0 pac_cv_f77_sizeof_integer=0 pac_cv_f77_sizeof_real=0 pac_cv_fc_accepts_F90=yes pac_cv_fc_and_f77=yes pac_cv_fc_module_case=lower pac_cv_fc_module_ext=mod pac_cv_fc_module_incflag=-I pac_cv_fc_module_outflag=-J pac_cv_fort_integer16=yes pac_cv_fort_integer1=yes pac_cv_fort_integer2=yes pac_cv_fort_integer4=yes pac_cv_fort_integer8=yes pac_cv_fort_real16=yes pac_cv_fort_real4=yes pac_cv_fort_real8=yes pac_cv_gnu_attr_format=yes pac_cv_gnu_attr_pure=yes pac_cv_have__func__=yes pac_cv_have__function__=yes pac_cv_have_cap__func__=no pac_cv_have_long_double=yes pac_cv_have_long_long=yes pac_cv_mkdir_p=yes pac_cv_my_conf_dir=/<> pac_cv_pointers_have_int_alignment=yes pac_cv_prog_c_unaligned_doubles=yes pac_cv_prog_c_weak_symbols=no pac_cv_prog_f77_and_c_stdio_libs=unknown pac_cv_prog_f77_exclaim_comments=yes pac_cv_prog_f77_has_incdir=-I pac_cv_prog_f77_library_dir_flag=-L pac_cv_prog_f77_mismatched_args=yes pac_cv_prog_f77_mismatched_args_parm= pac_cv_prog_f77_name_mangle='lower uscore' pac_cv_prog_fc_and_c_stdio_libs=unknown pac_cv_prog_fc_cross=no pac_cv_prog_fc_works=yes pac_cv_prog_make_allows_comments=no pac_cv_prog_make_found_clock_skew=no pac_cv_prog_make_include=no pac_cv_prog_make_set_cflags=yes pac_cv_prog_make_vpath=VPATH ## ----------------- ## ## Output variables. ## ## ----------------- ## ABIVERSION='13:0:1' ABIVERSIONFLAGS='-version-info $(ABIVERSION)' ACLOCAL='${SHELL} /<>/confdb/missing aclocal-1.15' ADDRESS_KIND='' ALLOCA='' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AR_FLAGS='cr' AS='' ASSERT_LEVEL='' AUTOCONF='${SHELL} /<>/confdb/missing autoconf' AUTOHEADER='${SHELL} /<>/confdb/missing autoheader' AUTOMAKE='${SHELL} /<>/confdb/missing automake-1.15' AWK='gawk' BASH_SHELL='/bin/bash' BGQ_INSTALL_DIR='' BSEND_OVERHEAD='' BUILD_BASH_SCRIPTS_FALSE='#' BUILD_BASH_SCRIPTS_TRUE='' BUILD_CH3_FALSE='#' BUILD_CH3_NEMESIS_FALSE='#' BUILD_CH3_NEMESIS_TRUE='' BUILD_CH3_SOCK_FALSE='' BUILD_CH3_SOCK_TRUE='#' BUILD_CH3_TRUE='' BUILD_CH3_UTIL_FTB_FALSE='' BUILD_CH3_UTIL_FTB_TRUE='#' BUILD_CH3_UTIL_SOCK_FALSE='' BUILD_CH3_UTIL_SOCK_TRUE='#' BUILD_COVERAGE_FALSE='' BUILD_COVERAGE_TRUE='' BUILD_CXX_BINDING_FALSE='' BUILD_CXX_BINDING_TRUE='' BUILD_DEBUGGER_DLL_FALSE='' BUILD_DEBUGGER_DLL_TRUE='#' BUILD_F08_BINDING_FALSE='' BUILD_F08_BINDING_TRUE='#' BUILD_F77_BINDING_FALSE='' BUILD_F77_BINDING_TRUE='' BUILD_FC_BINDING_FALSE='#' BUILD_FC_BINDING_TRUE='' BUILD_HCOLL_FALSE='' BUILD_HCOLL_TRUE='#' BUILD_LOGGING_RLOG_FALSE='' BUILD_LOGGING_RLOG_TRUE='#' BUILD_MPID_COMMON_DATATYPE_FALSE='#' BUILD_MPID_COMMON_DATATYPE_TRUE='' BUILD_MPID_COMMON_SCHED_FALSE='#' BUILD_MPID_COMMON_SCHED_TRUE='' BUILD_MPID_COMMON_SOCK_FALSE='' BUILD_MPID_COMMON_SOCK_POLL_FALSE='' BUILD_MPID_COMMON_SOCK_POLL_TRUE='#' BUILD_MPID_COMMON_SOCK_TRUE='#' BUILD_MPID_COMMON_THREAD_FALSE='#' BUILD_MPID_COMMON_THREAD_TRUE='' BUILD_NAMEPUB_FILE_FALSE='' BUILD_NAMEPUB_FILE_TRUE='#' BUILD_NAMEPUB_PMI_FALSE='#' BUILD_NAMEPUB_PMI_TRUE='' BUILD_NEMESIS_NETMOD_LLC_FALSE='' BUILD_NEMESIS_NETMOD_LLC_TRUE='#' BUILD_NEMESIS_NETMOD_MXM_FALSE='' BUILD_NEMESIS_NETMOD_MXM_TRUE='#' BUILD_NEMESIS_NETMOD_OFI_FALSE='' BUILD_NEMESIS_NETMOD_OFI_TRUE='#' BUILD_NEMESIS_NETMOD_PORTALS4_FALSE='' BUILD_NEMESIS_NETMOD_PORTALS4_TRUE='#' BUILD_NEMESIS_NETMOD_TCP_FALSE='#' BUILD_NEMESIS_NETMOD_TCP_TRUE='' BUILD_PAMID_FALSE='' BUILD_PAMID_TRUE='#' BUILD_PMI_PMI2_FALSE='' BUILD_PMI_PMI2_POE_FALSE='' BUILD_PMI_PMI2_POE_TRUE='' BUILD_PMI_PMI2_SIMPLE_FALSE='' BUILD_PMI_PMI2_SIMPLE_TRUE='' BUILD_PMI_PMI2_TRUE='' BUILD_PMI_SIMPLE_FALSE='' BUILD_PMI_SIMPLE_TRUE='' BUILD_PMI_SLURM_FALSE='' BUILD_PMI_SLURM_TRUE='' BUILD_PM_GFORKER_FALSE='' BUILD_PM_GFORKER_TRUE='' BUILD_PM_HYDRA_FALSE='' BUILD_PM_HYDRA_TRUE='' BUILD_PM_REMSHELL_FALSE='' BUILD_PM_REMSHELL_TRUE='' BUILD_PM_UTIL_FALSE='' BUILD_PM_UTIL_TRUE='' BUILD_PROFILING_LIB_FALSE='' BUILD_PROFILING_LIB_TRUE='#' BUILD_ROMIO_FALSE='#' BUILD_ROMIO_TRUE='' CC='gcc' CCDEPMODE='depmode=none' CFLAGS=' -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2' CMB_1INT_ALIGNMENT='' CMB_STATUS_ALIGNMENT='' CONFIGURE_ARGS_CLEAN='--build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-shared --prefix=/usr --enable-fortran=all --disable-rpath --disable-wrapper-rpath --sysconfdir=/etc/mpich --libdir=/usr/lib/x86_64-linux-gnu --includedir=/usr/include/mpich --docdir=/usr/share/doc/mpich --with-hwloc-prefix=system --enable-checkpointing --with-hydra-ckpointlib=blcr CPPFLAGS= CFLAGS= CXXFLAGS= FFLAGS= FCFLAGS=' CONFIGURE_ARGUMENTS=' '\''--build=x86_64-linux-gnu'\'' '\''--includedir=${prefix}/include'\'' '\''--mandir=${prefix}/share/man'\'' '\''--infodir=${prefix}/share/info'\'' '\''--sysconfdir=/etc'\'' '\''--localstatedir=/var'\'' '\''--disable-silent-rules'\'' '\''--libdir=${prefix}/lib/x86_64-linux-gnu'\'' '\''--libexecdir=${prefix}/lib/x86_64-linux-gnu'\'' '\''--disable-maintainer-mode'\'' '\''--disable-dependency-tracking'\'' '\''--enable-shared'\'' '\''--prefix=/usr'\'' '\''--enable-fortran=all'\'' '\''--disable-rpath'\'' '\''--disable-wrapper-rpath'\'' '\''--sysconfdir=/etc/mpich'\'' '\''--libdir=/usr/lib/x86_64-linux-gnu'\'' '\''--includedir=/usr/include/mpich'\'' '\''--docdir=/usr/share/doc/mpich'\'' '\''--with-hwloc-prefix=system'\'' '\''--enable-checkpointing'\'' '\''--with-hydra-ckpointlib=blcr'\'' '\''CPPFLAGS='\'' '\''CFLAGS='\'' '\''CXXFLAGS='\'' '\''FFLAGS='\'' '\''FCFLAGS='\'' '\''build_alias=x86_64-linux-gnu'\'' '\''MPICHLIB_CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security'\'' '\''MPICHLIB_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2'\'' '\''MPICHLIB_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security'\'' '\''MPICHLIB_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong'\'' '\''MPICHLIB_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong'\'' '\''LDFLAGS=-Wl,-z,relro'\'' '\''FC=gfortran'\'' '\''F77=gfortran'\'' '\''MPILIBNAME=mpich'\''' COUNT_KIND='' CPP='gcc -E' CPPFLAGS=' -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/src/mpl/include -I/<>/src/mpl/include -I/<>/src/openpa/src -I/<>/src/openpa/src -D_REENTRANT -I/<>/src/mpi/romio/include' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=none' CXXFLAGS=' -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2' CYGPATH_W='echo' C_LINKPATH_SHL='' DEFS='' DEPDIR='.deps' DEVICE='ch3:nemesis' DISABLE_TAG_SUPPORT='' DLLIMPORT='' DLLTOOL='false' DOCTEXT='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F08_2INT='' F08_AINT='' F08_BYTE='' F08_CHAR='' F08_COMPLEX16='' F08_COMPLEX32='' F08_COMPLEX8='' F08_COUNT='' F08_CXX_BOOL='' F08_CXX_DOUBLE_COMPLEX='' F08_CXX_FLOAT_COMPLEX='' F08_CXX_LONG_DOUBLE_COMPLEX='' F08_C_AINT='' F08_C_BOOL='' F08_C_COMPLEX='' F08_C_COUNT='' F08_C_DOUBLE_COMPLEX='' F08_C_FLOAT_COMPLEX='' F08_C_LONG_DOUBLE_COMPLEX='' F08_C_OFFSET='' F08_DOUBLE='' F08_DOUBLE_INT='' F08_FLOAT='' F08_FLOAT_INT='' F08_INT16_T='' F08_INT32_T='' F08_INT64_T='' F08_INT8_T='' F08_INT='' F08_INTEGER16='' F08_INTEGER1='' F08_INTEGER2='' F08_INTEGER4='' F08_INTEGER8='' F08_LB='' F08_LONG='' F08_LONG_DOUBLE='' F08_LONG_DOUBLE_INT='' F08_LONG_INT='' F08_LONG_LONG='' F08_LONG_LONG_INT='' F08_OFFSET='' F08_PACKED='' F08_REAL16='' F08_REAL4='' F08_REAL8='' F08_SHORT='' F08_SHORT_INT='' F08_SIGNED_CHAR='' F08_UB='' F08_UINT16_T='' F08_UINT32_T='' F08_UINT64_T='' F08_UINT8_T='' F08_UNSIGNED='' F08_UNSIGNED_CHAR='' F08_UNSIGNED_INT='' F08_UNSIGNED_LONG='' F08_UNSIGNED_LONG_LONG='' F08_UNSIGNED_SHORT='' F08_WCHAR='' F77='gfortran' F77CPP='' F77_COMPLEX16='' F77_COMPLEX32='' F77_COMPLEX8='' F77_INCDIR='-I' F77_INTEGER16='' F77_INTEGER1='' F77_INTEGER2='' F77_INTEGER4='' F77_INTEGER8='' F77_LIBDIR_LEADER='-L' F77_NAME_MANGLE='F77_NAME_LOWER_USCORE' F77_OTHER_LIBS='' F77_REAL16='' F77_REAL4='' F77_REAL8='' FC='gfortran' FCCPP='' FCEXT='f90' FCFLAGS=' -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2' FCINC='-I' FCINCFLAG='-I' FCMODEXT='mod' FCMODINCFLAG='-I' FCMODINCSPEC='' FCMODOUTFLAG='-J' FC_ALL_INTEGER_MODELS='' FC_DOUBLE_MODEL='' FC_INTEGER_MODEL='' FC_INTEGER_MODEL_MAP='' FC_OTHER_LIBS='' FC_REAL_MODEL='' FC_WORK_FILES_ARG='' FFLAGS=' -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -O2' FGREP='/bin/grep -F' FILE='' FLIBS=' -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. -lgfortran -lm -lquadmath' FORTRAN_BINDING='1' FORTRAN_MPI_OFFSET='' GCOV='' GNUCXX_MINORVERSION='2' GNUCXX_VERSION='4' GREP='/bin/grep' HAVE_CXX_EXCEPTIONS='1' HAVE_ERROR_CHECKING='1' HAVE_ROMIO='#include "mpio.h"' INCLUDE_MPICXX_H='#include "mpicxx.h"' INSTALL_DATA='${INSTALL} -m 644' INSTALL_MPIF77_FALSE='' INSTALL_MPIF77_TRUE='#' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INTEGER_KIND='' INTERLIB_DEPS='yes' KILLALL='true' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-Wl,-z,relro' LIBOBJS='' LIBS='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LPMPILIBNAME='' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKE='make' MAKEINFO='${SHELL} /<>/confdb/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='mkdir -p' MPIBASEMODNAME='mpi_base' MPICC_NAME='' MPICHLIB_CFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' MPICHLIB_CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' MPICHLIB_CXXFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' MPICHLIB_FCFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' MPICHLIB_FFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong' MPICH_MPICC_CFLAGS='' MPICH_MPICC_CPPFLAGS='' MPICH_MPICC_LDFLAGS='' MPICH_MPICC_LIBS='' MPICH_MPICXX_CPPFLAGS='' MPICH_MPICXX_CXXFLAGS='' MPICH_MPICXX_LDFLAGS='' MPICH_MPICXX_LIBS='' MPICH_MPIF77_CPPFLAGS='' MPICH_MPIF77_FFLAGS='' MPICH_MPIF77_LDFLAGS='' MPICH_MPIF77_LIBS='' MPICH_MPIFORT_CPPFLAGS='' MPICH_MPIFORT_FCFLAGS='' MPICH_MPIFORT_LDFLAGS='' MPICH_MPIFORT_LIBS='' MPICH_NUMVERSION='30200300' MPICH_RELEASE_DATE='Wed Nov 11 22:06:48 CST 2015' MPICH_TIMER_KIND='' MPICH_TIMER_TYPE='' MPICH_VERSION='3.2' MPICONSTMODNAME='mpi_constants' MPICPP_NAME='' MPICXXLIBNAME='mpichcxx' MPICXX_NAME='' MPIF77_NAME='' MPIF90_NAME='' MPIFCLIBNAME='mpichfort' MPIFORT_NAME='' MPIFPMPI=',PMPI_WTIME,PMPI_WTICK' MPILIBNAME='mpich' MPIMODNAME='mpi' MPIR_CXX_BOOL='0x0c000000' MPIR_CXX_COMPLEX='0x0c000000' MPIR_CXX_DOUBLE_COMPLEX='0x0c000000' MPIR_CXX_LONG_DOUBLE_COMPLEX='0x0c000000' MPISIZEOFMODNAME='mpi_sizeofs' MPIU_DLL_SPEC_DEF='' MPIU_PINT='' MPI_2COMPLEX='' MPI_2DOUBLE_COMPLEX='' MPI_2DOUBLE_PRECISION='' MPI_2INT='0x4c000816' MPI_2INTEGER='' MPI_2REAL='' MPI_AINT='' MPI_AINT_DATATYPE='' MPI_AINT_FMT_DEC_SPEC='' MPI_AINT_FMT_HEX_SPEC='' MPI_BYTE='0x4c00010d' MPI_CHAR='0x4c000101' MPI_CHARACTER='0x4c00011a' MPI_COMPLEX16='0x4c00102a' MPI_COMPLEX32='0x4c00202c' MPI_COMPLEX8='0x4c000828' MPI_COMPLEX='' MPI_COUNT='' MPI_COUNT_DATATYPE='' MPI_C_BOOL='0x4c00013f' MPI_C_DOUBLE_COMPLEX='0x4c001041' MPI_C_FLOAT_COMPLEX='0x4c000840' MPI_C_INTERFACE_CDESC_NAME='mpi_c_interface_cdesc' MPI_C_INTERFACE_GLUE_NAME='mpi_c_interface_glue' MPI_C_INTERFACE_NAME='mpi_c_interface' MPI_C_INTERFACE_NOBUF_NAME='mpi_c_interface_nobuf' MPI_C_INTERFACE_TYPES_NAME='mpi_c_interface_types' MPI_C_LONG_DOUBLE_COMPLEX='0x4c002042' MPI_DOUBLE='0x4c00080b' MPI_DOUBLE_COMPLEX='' MPI_DOUBLE_INT='0x8c000001' MPI_DOUBLE_PRECISION='' MPI_F08_CALLBACKS_NAME='mpi_f08_callbacks' MPI_F08_COMPILE_CONSTANTS_NAME='mpi_f08_compile_constants' MPI_F08_LINK_CONSTANTS_NAME='mpi_f08_link_constants' MPI_F08_NAME='mpi_f08' MPI_F08_TYPES_NAME='mpi_f08_types' MPI_F77_2INT='' MPI_F77_AINT='' MPI_F77_BYTE='' MPI_F77_CHAR='' MPI_F77_COUNT='' MPI_F77_CXX_BOOL='' MPI_F77_CXX_DOUBLE_COMPLEX='' MPI_F77_CXX_FLOAT_COMPLEX='' MPI_F77_CXX_LONG_DOUBLE_COMPLEX='' MPI_F77_C_BOOL='' MPI_F77_C_COMPLEX='' MPI_F77_C_DOUBLE_COMPLEX='' MPI_F77_C_FLOAT_COMPLEX='' MPI_F77_C_LONG_DOUBLE_COMPLEX='' MPI_F77_DOUBLE='' MPI_F77_DOUBLE_INT='' MPI_F77_FLOAT='' MPI_F77_FLOAT_INT='' MPI_F77_INT16_T='' MPI_F77_INT32_T='' MPI_F77_INT64_T='' MPI_F77_INT8_T='' MPI_F77_INT='' MPI_F77_LB='' MPI_F77_LONG='' MPI_F77_LONG_DOUBLE='' MPI_F77_LONG_DOUBLE_INT='' MPI_F77_LONG_INT='' MPI_F77_LONG_LONG='' MPI_F77_LONG_LONG_INT='' MPI_F77_OFFSET='' MPI_F77_PACKED='' MPI_F77_SHORT='' MPI_F77_SHORT_INT='' MPI_F77_SIGNED_CHAR='' MPI_F77_UB='' MPI_F77_UINT16_T='' MPI_F77_UINT32_T='' MPI_F77_UINT64_T='' MPI_F77_UINT8_T='' MPI_F77_UNSIGNED='' MPI_F77_UNSIGNED_CHAR='' MPI_F77_UNSIGNED_LONG='' MPI_F77_UNSIGNED_LONG_LONG='' MPI_F77_UNSIGNED_SHORT='' MPI_F77_WCHAR='' MPI_FINT='' MPI_FLOAT='0x4c00040a' MPI_FLOAT_INT='0x8c000000' MPI_INT16_T='0x4c000238' MPI_INT32_T='0x4c000439' MPI_INT64_T='0x4c00083a' MPI_INT8_T='0x4c000137' MPI_INT='0x4c000405' MPI_INTEGER16='MPI_DATATYPE_NULL' MPI_INTEGER1='0x4c00012d' MPI_INTEGER2='0x4c00022f' MPI_INTEGER4='0x4c000430' MPI_INTEGER8='0x4c000831' MPI_INTEGER='' MPI_LB='0x4c000010' MPI_LOGICAL='' MPI_LONG='0x4c000807' MPI_LONG_DOUBLE='0x4c00100c' MPI_LONG_DOUBLE_INT='0x8c000004' MPI_LONG_INT='0x8c000002' MPI_LONG_LONG='0x4c000809' MPI_MAX_ERROR_STRING='' MPI_MAX_LIBRARY_VERSION_STRING='' MPI_MAX_PROCESSOR_NAME='' MPI_OFFSET='' MPI_OFFSET_DATATYPE='' MPI_OFFSET_TYPEDEF='' MPI_PACKED='0x4c00010f' MPI_REAL16='0x4c00102b' MPI_REAL4='0x4c000427' MPI_REAL8='0x4c000829' MPI_REAL='' MPI_SHORT='0x4c000203' MPI_SHORT_INT='0x8c000003' MPI_SIGNED_CHAR='0x4c000118' MPI_STATUS_SIZE='' MPI_UB='0x4c000011' MPI_UINT16_T='0x4c00023c' MPI_UINT32_T='0x4c00043d' MPI_UINT64_T='0x4c00083e' MPI_UINT8_T='0x4c00013b' MPI_UNSIGNED_CHAR='0x4c000102' MPI_UNSIGNED_INT='0x4c000406' MPI_UNSIGNED_LONG='0x4c000808' MPI_UNSIGNED_LONG_LONG='0x4c000819' MPI_UNSIGNED_SHORT='0x4c000204' MPI_WCHAR='0x4c00040e' MPLLIBNAME='mpl' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OFFSET_KIND='' OPALIBNAME='opa' OTOOL64='' OTOOL='' PACKAGE='mpich' PACKAGE_BUGREPORT='discuss@mpich.org' PACKAGE_NAME='MPICH' PACKAGE_STRING='MPICH 3.2' PACKAGE_TARNAME='mpich' PACKAGE_URL='http://www.mpich.org/' PACKAGE_VERSION='3.2' PAMILIBNAME='pami' PAPI_INCLUDE='' PATH_SEPARATOR=':' PERL='/usr/bin/perl' PMPILIBNAME='pmpich' PMPI_F08_NAME='pmpi_f08' PRIMARY_PM_GFORKER_FALSE='' PRIMARY_PM_GFORKER_TRUE='' PRIMARY_PM_REMSHELL_FALSE='' PRIMARY_PM_REMSHELL_TRUE='' QUEUE_BINARY_SEARCH_SUPPORT_FALSE='' QUEUE_BINARY_SEARCH_SUPPORT_TRUE='#' RANLIB='ranlib' REQD='' REQI1='' REQI2='' REQI8='' RSH='' SED='/bin/sed' SET_CFLAGS='CFLAGS=' SET_MAKE='MAKE=make' SHELL='/bin/bash' SHLIB_EXT='.so' SIZEOF_FC_CHARACTER='' SIZEOF_FC_DOUBLE_PRECISION='' SIZEOF_FC_INTEGER='' SIZEOF_FC_REAL='' SIZEOF_MPI_STATUS='' SSH='' STRIP='strip' USER_CFLAGS='' USER_CPPFLAGS='' USER_CXXFLAGS='' USER_EXTRA_LIBS='' USER_FCFLAGS='' USER_FFLAGS='' USER_LDFLAGS='-Wl,-z,relro' USER_LIBS='' USE_DBG_LOGGING='0' VERSION='3.2' VPATH='VPATH=.:${srcdir}' WRAPPER_CFLAGS='' WRAPPER_CPPFLAGS='' WRAPPER_CXXFLAGS='' WRAPPER_EXTRA_LIBS='' WRAPPER_FCFLAGS='' WRAPPER_FFLAGS='' WRAPPER_LDFLAGS='-Wl,-z,relro' WRAPPER_LIBS='' WRAPPER_RPATH_LDFLAGS='' WTIME_DOUBLE_TYPE='' XARGS_NODATA_OPT='-r' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindings=' f77 f90 f08 cxx' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' channel_name='nemesis' datadir='${datarootdir}' datarootdir='${prefix}/share' device_name='ch3' docdir='/usr/share/doc/mpich' dvidir='${docdir}' enable_wrapper_rpath='no' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='/usr/include/mpich' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/confdb/install-sh' libdir='/usr/lib/x86_64-linux-gnu' libexecdir='${prefix}/lib/x86_64-linux-gnu' libmpi_so_version='13:0:1' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' master_top_builddir='/<>' master_top_srcdir='/<>' mkdir_p='$(MKDIR_P)' mmx_copy_s='' modincdir='/usr/include/mpich' mpich_libtool_static_flag='' mpllib='src/mpl/libmpl.la' mpllibdir='' mplsrcdir='/<>/src/mpl' nemesis_nets_array='' nemesis_nets_array_sz='' nemesis_nets_dirs='' nemesis_nets_func_array='' nemesis_nets_func_decl='' nemesis_nets_macro_defs='' nemesis_nets_strings='' nemesis_networks='tcp' oldincludedir='/usr/include' opalib='/<>/src/openpa/src/libopa.la' opalibdir='' opasrcdir='/<>/src/openpa' pdfdir='${docdir}' pkgconfigdir='' pm_name='hydra' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='/etc/mpich' target_alias='' ## ------------------- ## ## File substitutions. ## ## ------------------- ## cc_shlib_conf='src/env/cc_shlib.conf' cxx_shlib_conf='src/env/cxx_shlib.conf' f77_shlib_conf='src/env/f77_shlib.conf' fc_shlib_conf='src/env/fc_shlib.conf' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "MPICH" #define PACKAGE_TARNAME "mpich" #define PACKAGE_VERSION "3.2" #define PACKAGE_STRING "MPICH 3.2" #define PACKAGE_BUGREPORT "discuss@mpich.org" #define PACKAGE_URL "http://www.mpich.org/" #define PACKAGE "mpich" #define VERSION "3.2" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL #define USE_LOGGING MPID_LOGGING_NONE #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE #define MPICH_IS_THREADED 1 #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE #define HAVE_ROMIO 1 #define HAVE__FUNC__ /**/ #define HAVE__FUNCTION__ /**/ #define HAVE_WEAK_ATTRIBUTE 1 #define USE_WEAK_SYMBOLS 1 #define ENABLE_PVAR_NEM 0 #define ENABLE_PVAR_RECVQ 0 #define ENABLE_PVAR_RMA 0 #define HAVE_LONG_LONG 1 #define STDCALL #define F77_NAME_LOWER_USCORE 1 #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 #define HAVE_FORTRAN_BINDING 1 #define HAVE_F08_BINDING 1 #define TRUE 1 #define FALSE 0 #define HAVE_CXX_EXCEPTIONS /**/ #define HAVE_NAMESPACES /**/ #define HAVE_NAMESPACE_STD /**/ #define HAVE_CXX_BINDING 1 #define HAVE_NAMEPUB_SERVICE 1 #define restrict __restrict #define HAVE_GCC_ATTRIBUTE 1 #define HAVE_BUILTIN_EXPECT 1 #define WORDS_LITTLEENDIAN 1 #define HAVE_LONG_DOUBLE 1 #define HAVE_LONG_LONG_INT 1 #define HAVE_MAX_INTEGER_ALIGNMENT 8 #define HAVE_MAX_STRUCT_ALIGNMENT 8 #define HAVE_MAX_FP_ALIGNMENT 16 #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 #define SIZEOF_CHAR 1 #define SIZEOF_UNSIGNED_CHAR 1 #define SIZEOF_SHORT 2 #define SIZEOF_UNSIGNED_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_UNSIGNED_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_UNSIGNED_LONG 8 #define SIZEOF_LONG_LONG 8 #define SIZEOF_UNSIGNED_LONG_LONG 8 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_LONG_DOUBLE 16 #define SIZEOF_VOID_P 8 #define STDC_HEADERS 1 #define HAVE_STDDEF_H 1 #define SIZEOF_WCHAR_T 4 #define SIZEOF_FLOAT_INT 8 #define SIZEOF_DOUBLE_INT 16 #define SIZEOF_LONG_INT 16 #define SIZEOF_SHORT_INT 8 #define SIZEOF_TWO_INT 8 #define SIZEOF_LONG_DOUBLE_INT 32 #define HAVE_SYS_BITYPES_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_INT8_T 1 #define HAVE_INT16_T 1 #define HAVE_INT32_T 1 #define HAVE_INT64_T 1 #define HAVE_UINT8_T 1 #define HAVE_UINT16_T 1 #define HAVE_UINT32_T 1 #define HAVE_UINT64_T 1 #define HAVE_STDBOOL_H 1 #define HAVE_COMPLEX_H 1 #define SIZEOF__BOOL 1 #define SIZEOF_FLOAT__COMPLEX 8 #define SIZEOF_DOUBLE__COMPLEX 16 #define SIZEOF_LONG_DOUBLE__COMPLEX 32 #define HAVE__BOOL 1 #define HAVE_FLOAT__COMPLEX 1 #define HAVE_DOUBLE__COMPLEX 1 #define HAVE_LONG_DOUBLE__COMPLEX 1 #define MPIR_REAL4_CTYPE float #define MPIR_REAL8_CTYPE double #define MPIR_REAL16_CTYPE long double #define MPIR_INTEGER1_CTYPE char #define MPIR_INTEGER2_CTYPE short #define MPIR_INTEGER4_CTYPE int #define MPIR_INTEGER8_CTYPE long #define SIZEOF_F77_INTEGER 0 #define SIZEOF_F77_REAL 0 #define SIZEOF_F77_DOUBLE_PRECISION 0 configure: exit 1 dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-shared --prefix=/usr --enable-fortran=all --disable-rpath --disable-wrapper-rpath --sysconfdir=/etc/mpich --libdir=/usr/lib/x86_64-linux-gnu --includedir=/usr/include/mpich --docdir=/usr/share/doc/mpich --with-hwloc-prefix=system --enable-checkpointing --with-hydra-ckpointlib=blcr CPPFLAGS= CFLAGS= CXXFLAGS= FFLAGS= FCFLAGS= returned exit code 1 debian/rules:49: recipe for target 'override_dh_auto_configure' failed make[1]: *** [override_dh_auto_configure] Error 2 make[1]: Leaving directory '/<>' debian/rules:42: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T18:30:36Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 97656 Build-Time: 89 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: mpich_3.2-7 Machine Architecture: amd64 Package: mpich Package-Time: 115 Source-Version: 3.2-7 Space: 97656 Status: attempted Version: 3.2-7 -------------------------------------------------------------------------------- Finished at 2017-07-06T18:30:36Z Build needed 00:01:55, 97656k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 115.878649406s DC-Time-Estimation: 115.878649406 versus expected 703 (r/m: 5.066691349990828 ; m: 115.878649406)