DC-Build-Header: netcdf-fortran 4.4.4+ds-2 / 2017-07-06 19:26:18 +0000 DC-Task: type:rebuild-binarch-only source:netcdf-fortran version:4.4.4+ds-2 chroot:unstable esttime:498 logfile:/tmp/netcdf-fortran_4.4.4+ds-2_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang netcdf-fortran_4.4.4+ds-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-46-0.eu-central-1.compute.internal +==============================================================================+ | netcdf-fortran 4.4.4+ds-2 (amd64) Thu, 06 Jul 2017 19:26:18 +0000 | +==============================================================================+ Package: netcdf-fortran Version: 4.4.4+ds-2 Source Version: 4.4.4+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-51429601-f1f0-427b-8fe4-9ef388003870' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [255 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en.diff/Index [27.9 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-0216.39.pdiff [15.0 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-0817.00.pdiff [7416 B] Get:7 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-1415.16.pdiff [17.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-2015.53.pdiff [15.2 kB] Get:9 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-03-0215.43.pdiff [50.2 kB] Get:10 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-03-0815.58.pdiff [5500 B] Get:11 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Building dependency tree... Reading state information... The following additional packages will be installed: cpp-6 g++-6 gcc-6 gcc-6-base gcc-7-base libasan3 libatomic1 libbsd0 libcc1-0 libcilkrts5 libclang-common-3.9-dev libclang1-3.9 libedit2 libffi6 libgcc-6-dev libgcc1 libgomp1 libitm1 libjsoncpp1 libllvm3.9 liblsan0 libmpx2 libncurses5 libobjc-6-dev libobjc4 libquadmath0 libstdc++-6-dev libstdc++6 libtsan0 libubsan0 Suggested packages: gnustep gnustep-devel clang-3.9-doc gcc-6-locales g++-6-multilib gcc-6-doc libstdc++6-6-dbg gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg libstdc++-6-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libffi6 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 The following packages will be upgraded: cpp-6 g++-6 gcc-6 gcc-6-base gcc-7-base libasan3 libatomic1 libcc1-0 libcilkrts5 libgcc-6-dev libgcc1 libgomp1 libitm1 liblsan0 libmpx2 libquadmath0 libstdc++-6-dev libstdc++6 libtsan0 libubsan0 20 upgraded, 11 newly installed, 0 to remove and 13 not upgraded. Need to get 83.9 MB of archives. After this operation, 251 MB of additional disk space will be used. 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Preparing to unpack .../16-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../17-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libquadmath0:amd64 (7.1.0-9) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libgomp1:amd64 (7.1.0-9) ... Setting up libatomic1:amd64 (7.1.0-9) ... Setting up libcc1-0:amd64 (7.1.0-9) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libcilkrts5:amd64 (7.1.0-9) ... Setting up libubsan0:amd64 (7.1.0-9) ... Setting up libtsan0:amd64 (7.1.0-9) ... Setting up gcc-6-base:amd64 (6.4.0-1) ... Setting up libbsd0:amd64 (0.8.5-1) ... Setting up liblsan0:amd64 (7.1.0-9) ... Setting up libmpx2:amd64 (7.1.0-9) ... Processing triggers for libc-bin (2.24-12) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up cpp-6 (6.4.0-1) ... Setting up libitm1:amd64 (7.1.0-9) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libasan3:amd64 (6.4.0-1) ... Setting up libgcc-6-dev:amd64 (6.4.0-1) ... Setting up libstdc++-6-dev:amd64 (6.4.0-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up gcc-6 (6.4.0-1) ... Setting up g++-6 (6.4.0-1) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/netcdf-fortran-tixSHo + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgnutls30 libhogweed4 libidn2-0 libnettle6 libp11-kit0 libtasn1-6 libunistring2 The following packages will be upgraded: apt cpp debconf g++ gcc libapt-pkg5.0 libdebconfclient0 libperl5.24 libsystemd0 libudev1 perl perl-base perl-modules-5.24 13 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 6330 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libperl5.24 amd64 5.24.1-6 [3525 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 perl amd64 5.24.1-6 [218 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 perl-base amd64 5.24.1-6 [1344 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 perl-modules-5.24 all 5.24.1-6 [2723 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libapt-pkg5.0 amd64 1.5~beta1 [922 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libnettle6 amd64 3.3-1+b1 [191 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libhogweed4 amd64 3.3-1+b1 [136 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libunistring2 amd64 0.9.7-2 [377 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libidn2-0 amd64 0.16-1+b1 [56.6 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libp11-kit0 amd64 0.23.7-2 [193 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libtasn1-6 amd64 4.12-2 [51.0 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libgnutls30 amd64 3.5.13-2 [914 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 apt amd64 1.5~beta1 [1237 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 debconf all 1.5.62 [160 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libsystemd0 amd64 233-10 [281 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libudev1 amd64 233-10 [126 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libdebconfclient0 amd64 0.229 [47.9 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 cpp amd64 4:6.3.0-4d1 [18.8 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 gcc amd64 4:6.3.0-4d1 [5252 B] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 g++ amd64 4:6.3.0-4d1 [1548 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 0s (86.0 MB/s) (Reading database ... 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Setting up perl-modules-5.24 (5.24.1-6) ... Setting up libperl5.24:amd64 (5.24.1-6) ... Setting up gcc (4:6.3.0-4d1) ... Setting up perl (5.24.1-6) ... Processing triggers for libc-bin (2.24-12) ... Setting up g++ (4:6.3.0-4d1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'netcdf-fortran' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/pkg-grass/netcdf-fortran.git Please use: git clone https://anonscm.debian.org/git/pkg-grass/netcdf-fortran.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1320 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main netcdf-fortran 4.4.4+ds-2 (dsc) [2400 B] Get:2 http://127.0.0.1:9999/debian unstable/main netcdf-fortran 4.4.4+ds-2 (tar) [1307 kB] Get:3 http://127.0.0.1:9999/debian unstable/main netcdf-fortran 4.4.4+ds-2 (diff) [10.7 kB] Fetched 1320 kB in 0s (24.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/netcdf-fortran-tixSHo/netcdf-fortran-4.4.4+ds' with '<>' I: NOTICE: Log filtering will replace 'build/netcdf-fortran-tixSHo' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-B1CO2L/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-B1CO2L/apt_archive ./ InRelease Get:2 copy:/<>/resolver-B1CO2L/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-B1CO2L/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-B1CO2L/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-B1CO2L/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-B1CO2L/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, gfortran, doxygen, graphviz, libjs-jquery, libnetcdf-dev (>= 1:4.4.0), pkg-config Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, gfortran, doxygen, graphviz, libjs-jquery, libnetcdf-dev (>= 1:4.4.0), pkg-config dpkg-deb: building package 'sbuild-build-depends-netcdf-fortran-dummy' in '/<>/resolver-B1CO2L/apt_archive/sbuild-build-depends-netcdf-fortran-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-netcdf-fortran-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-B1CO2L/apt_archive ./ InRelease Get:2 copy:/<>/resolver-B1CO2L/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-B1CO2L/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-B1CO2L/apt_archive ./ Sources [555 B] Get:5 copy:/<>/resolver-B1CO2L/apt_archive ./ Packages [636 B] Fetched 2154 B in 0s (0 B/s) Reading package lists... Reading package lists... Install netcdf-fortran build dependencies (apt-based resolver) -------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism doxygen file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-6 graphviz groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libann0 libarchive-zip-perl libcairo2 libcdt5 libcgraph6 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdatrie1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3 libgfortran-6-dev libgfortran3 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhdf5-dev libice6 libicu57 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libnetcdf-dev libnetcdf11 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libsz2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 lsb-base m4 man-db pkg-config po-debconf ucf x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev gsfonts graphviz-doc groff libcurl4-doc libcurl3-dbg libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libgd-tools krb5-doc krb5-user libhdf5-doc netcdf-bin netcdf-doc libtool-doc gcj-jdk xapian-tools m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur fonts-liberation ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism doxygen file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-6 graphviz groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libann0 libarchive-zip-perl libcairo2 libcdt5 libcgraph6 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdatrie1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3 libgfortran-6-dev libgfortran3 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhdf5-dev libice6 libicu57 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libnetcdf-dev libnetcdf11 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libsz2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 lsb-base m4 man-db pkg-config po-debconf sbuild-build-depends-netcdf-fortran-dummy ucf x11-common zlib1g-dev 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 50.3 MB of archives. After this operation, 173 MB of additional disk space will be used. Get:1 copy:/<>/resolver-B1CO2L/apt_archive ./ sbuild-build-depends-netcdf-fortran-dummy 0.invalid.0 [850 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.29-3 [281 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8-0.2 [449 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.12.3-0.1 [303 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.12.3-0.1 [366 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig amd64 2.12.3-0.1 [436 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libxapian30 amd64 1.4.4-2 [1068 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.15-1 [61.7 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.15-1 [119 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.15-1 [311 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.15-1 [154 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3 [68.2 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3 [105 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.44+dfsg-7 [85.2 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-7 [219 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 doxygen amd64 1.8.13-7 [3966 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-1 [265 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran-6-dev amd64 6.4.0-1 [299 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 gfortran-6 amd64 6.4.0-1 [6911 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 gfortran amd64 4:6.3.0-4d1 [1362 B] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libcdt5 amd64 2.38.0-17 [59.6 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.8-3 [237 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.4-3 [290 kB] Get:65 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[389 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libpango-1.0-0 amd64 1.40.6-1 [182 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.10-2 [84.3 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.40.6-1 [67.0 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.40.6-1 [54.8 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libxdot4 amd64 2.38.0-17 [55.6 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libgvc6 amd64 2.38.0-17 [639 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libgvpr2 amd64 2.38.0-17 [211 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 graphviz amd64 2.38.0-17 [802 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 hdf5-helpers amd64 1.10.0-patch1+docs-3 [35.9 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libaec-dev amd64 0.3.2-1 [17.4 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.24.0-1 [81.6 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.17.0-4+b1 [43.0 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3-gnutls amd64 7.52.1-5 [289 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libcurl4-gnutls-dev amd64 7.52.1-5 [371 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3 [1284 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-3 [130 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-dev amd64 1.10.0-patch1+docs-3 [2437 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libjs-jquery all 3.1.1-2 [154 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libnetcdf11 amd64 1:4.4.1.1-2 [334 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libnetcdf-dev amd64 1:4.4.1.1-2 [77.3 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.3 MB in 0s (88.2 MB/s) Selecting previously unselected package groff-base. 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Setting up pkg-config (0.29-4+b1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libssh2-1:amd64 (1.8.0-1) ... Processing triggers for libc-bin (2.24-12) ... Setting up autotools-dev (20161112.1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-7) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libthai-data (0.1.26-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up hdf5-helpers (1.10.0-patch1+docs-3) ... Setting up libcdt5 (2.38.0-17) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-2) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up gfortran-6 (6.4.0-1) ... Setting up fontconfig-config (2.12.3-0.1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libgvpr2 (2.38.0-17) ... Setting up libaec-dev:amd64 (0.3.2-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up autoconf (2.69-10) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up file (1:5.30-1) ... Setting up libkrb5support0:amd64 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:amd64 (1.12-1) ... Setting up libtool (2.4.6-2) ... Setting up gfortran (4:6.3.0-4d1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libfontconfig1:amd64 (2.12.3-0.1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.15-1) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-3) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:amd64 (2:1.6.4-3) ... Setting up libhdf5-dev (1.10.0-patch1+docs-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libkrb5-3:amd64 (1.15-1) ... Setting up fontconfig (2.12.3-0.1) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgd3:amd64 (2.2.4-2) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.15-1) ... Setting up libpango-1.0-0:amd64 (1.40.6-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.14.10-1) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5) ... Setting up libpangoft2-1.0-0:amd64 (1.40.6-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.52.1-5) ... Setting up libnetcdf11 (1:4.4.1.1-2) ... Setting up libpangocairo-1.0-0:amd64 (1.40.6-1) ... Setting up libnetcdf-dev (1:4.4.1.1-2) ... Setting up libgvc6 (2.38.0-17) ... Setting up graphviz (2.38.0-17) ... Setting up dh-autoreconf (14) ... Setting up debhelper (10.6.2) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up sbuild-build-depends-netcdf-fortran-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-3.9_1:3.9.1-10 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 doxygen_1.8.13-7 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libpangoft2-1.0-0_1.40.6-1 libpathplan4_2.38.0-17 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng16-16_1.6.29-3 libpsl5_0.17.0-4+b1 libquadmath0_7.1.0-9 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsm6_2:1.2.2-1+b3 libsmartcols1_2.29.2-1 libss2_1.43.4-2 libssh2-1_1.8.0-1 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libsz2_0.3.2-1 libtasn1-6_4.12-2 libthai-data_0.1.26-1 libthai0_0.1.26-1 libtiff5_4.0.8-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libwebp6_0.5.2-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxapian30_1.4.4-2 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-3 libxdot4_2.38.0-17 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-3 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 pkg-config_0.29-4+b1 po-debconf_1.0.20 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-netcdf-fortran-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 ucf_3.0036 util-linux_2.29.2-1 x11-common_1:7.7+19 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun May 15 13:43:25 2016 UTC gpgv: using RSA key 6750F10AE88D4AF1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./netcdf-fortran_4.4.4+ds-2.dsc dpkg-source: info: extracting netcdf-fortran in /<>/netcdf-fortran-4.4.4+ds dpkg-source: info: unpacking netcdf-fortran_4.4.4+ds.orig.tar.gz dpkg-source: info: unpacking netcdf-fortran_4.4.4+ds-2.debian.tar.xz dpkg-source: info: applying privacy-breach-logo.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-51429601-f1f0-427b-8fe4-9ef388003870 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package netcdf-fortran dpkg-buildpackage: info: source version 4.4.4+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build netcdf-fortran-4.4.4+ds dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_autoreconf_clean -O--parallel debian/rules override_dh_clean make[1]: Entering directory '/<>/netcdf-fortran-4.4.4+ds' dh_clean rm -f -r docs/doxygen_sqlite3.db docs/html/ docs/man/ docs/latex/ make[1]: Leaving directory '/<>/netcdf-fortran-4.4.4+ds' debian/rules build-arch dh build-arch --with autoreconf --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:128: installing './compile' configure.ac:31: installing './missing' fortran/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/netcdf-fortran-4.4.4+ds' dh_auto_configure -- --enable-doxygen --enable-dot ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen --enable-dot configure: netCDF-Fortran 4.4.4 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether extra valgrind tests should be run... no checking whether parallel IO tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking for doxygen... doxygen checking for dot... dot configure: finding C compiler checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for an ANSI C-conforming const... yes configure: finding Fortran compiler checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether Fortran compiler is checked for ISO_C_BINDING support... yes checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING... yes checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV additions... yes checking if Fortran compiler supports TS29113 standard extension... yes checking whether F03 native code is desired... yes checking whether fortran type sizes should be checked... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking where to put large temp files if large file tests are run... . configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities configure: trying to set fortran flags for this platform checking what FC is set to... gfortran checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... configure: error: Could not link conftestf.o and conftest.o "tail -v -n +0 config.log" ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by netCDF-Fortran configure 4.4.4, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen --enable-dot ## --------- ## ## Platform. ## ## --------- ## hostname = ip-172-31-46-0 uname -m = x86_64 uname -r = 4.9.0-2-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.18-1 (2017-03-30) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2756: netCDF-Fortran 4.4.4 configure:2796: checking build system type configure:2810: result: x86_64-pc-linux-gnu configure:2830: checking host system type configure:2843: result: x86_64-pc-linux-gnu configure:2865: checking target system type configure:2878: result: x86_64-pc-linux-gnu configure:2922: checking for a BSD-compatible install configure:2990: result: /usr/bin/install -c configure:3001: checking whether build environment is sane configure:3056: result: yes configure:3207: checking for a thread-safe mkdir -p configure:3246: result: /bin/mkdir -p configure:3253: checking for gawk configure:3283: result: no configure:3253: checking for mawk configure:3269: found /usr/bin/mawk configure:3280: result: mawk configure:3291: checking whether make sets $(MAKE) configure:3313: result: yes configure:3342: checking whether make supports nested variables configure:3359: result: yes configure:3486: checking whether to enable maintainer-specific portions of Makefiles configure:3495: result: no configure:3512: checking user options configure:3516: checking whether extra valgrind tests should be run configure:3524: result: no configure:3528: checking whether parallel IO tests should be run configure:3536: result: no configure:3540: checking whether netCDF extra tests should be run (developers only) configure:3548: result: no configure:3605: checking for doxygen configure:3621: found /usr/bin/doxygen configure:3632: result: doxygen configure:3654: checking for dot configure:3670: found /usr/bin/dot configure:3681: result: dot configure:3720: finding C compiler configure:3771: checking for gcc configure:3787: found /usr/bin/gcc configure:3798: result: gcc configure:4027: checking for C compiler version configure:4036: gcc --version >&5 clang version 3.9.1-10 (tags/RELEASE_391/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin configure:4047: $? = 0 configure:4036: gcc -v >&5 clang version 3.9.1-10 (tags/RELEASE_391/rc2) Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.1.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.4.0 ... rest of stderr output deleted ... configure:4047: $? = 0 configure:4036: gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:4047: $? = 1 configure:4036: gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:4047: $? = 1 configure:4067: checking whether the C compiler works configure:4089: gcc -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:4093: $? = 0 configure:4141: result: yes configure:4144: checking for C compiler default output file name configure:4146: result: a.out configure:4152: checking for suffix of executables configure:4159: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:4163: $? = 0 configure:4185: result: configure:4207: checking whether we are cross compiling configure:4215: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:4219: $? = 0 configure:4226: ./conftest configure:4230: $? = 0 configure:4245: result: no configure:4250: checking for suffix of object files configure:4272: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4276: $? = 0 configure:4297: result: o configure:4301: checking whether we are using the GNU C compiler configure:4320: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4320: $? = 0 configure:4329: result: yes configure:4338: checking whether gcc accepts -g configure:4358: gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4358: $? = 0 configure:4399: result: yes configure:4416: checking for gcc option to accept ISO C89 configure:4479: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4479: $? = 0 configure:4492: result: none needed configure:4517: checking whether gcc understands -c and -o together configure:4539: gcc -c conftest.c -o conftest2.o configure:4542: $? = 0 configure:4539: gcc -c conftest.c -o conftest2.o configure:4542: $? = 0 configure:4554: result: yes configure:4582: checking for style of include used by make configure:4610: result: GNU configure:4636: checking dependency style of gcc configure:4747: result: none configure:4764: checking for an ANSI C-conforming const configure:4830: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4830: $? = 0 configure:4837: result: yes configure:4860: finding Fortran compiler configure:4915: checking for gfortran configure:4931: found /usr/bin/gfortran configure:4942: result: gfortran configure:4968: checking for Fortran compiler version configure:4977: gfortran --version >&5 GNU Fortran (Debian 6.4.0-1) 6.4.0 20170704 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4988: $? = 0 configure:4977: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.4.0-1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.4.0 20170704 (Debian 6.4.0-1) configure:4988: $? = 0 configure:4977: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:4988: $? = 1 configure:4977: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:4988: $? = 1 configure:4997: checking whether we are using the GNU Fortran compiler configure:5010: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.F >&5 configure:5010: $? = 0 configure:5019: result: yes configure:5025: checking whether gfortran accepts -g configure:5036: gfortran -c -g conftest.f >&5 configure:5036: $? = 0 configure:5044: result: yes configure:5126: checking for gfortran configure:5142: found /usr/bin/gfortran configure:5153: result: gfortran configure:5179: checking for Fortran 77 compiler version configure:5188: gfortran --version >&5 GNU Fortran (Debian 6.4.0-1) 6.4.0 20170704 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5199: $? = 0 configure:5188: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.4.0-1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.4.0 20170704 (Debian 6.4.0-1) configure:5199: $? = 0 configure:5188: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:5199: $? = 1 configure:5188: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:5199: $? = 1 configure:5208: checking whether we are using the GNU Fortran 77 compiler configure:5221: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.F >&5 configure:5221: $? = 0 configure:5230: result: yes configure:5236: checking whether gfortran accepts -g configure:5247: gfortran -c -g conftest.f >&5 configure:5247: $? = 0 configure:5255: result: yes configure:5299: checking whether Fortran compiler is checked for ISO_C_BINDING support configure:5307: result: yes configure:5327: checking for Fortran flag to compile .f90 files configure:5347: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f90 >&5 configure:5347: $? = 0 configure:5356: result: none configure:5384: checking fortran 90 modules inclusion flag configure:5409: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f90 >&5 configure:5409: $? = 0 configure:5426: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Itmpdir_0 conftest.f90 >&5 configure:5426: $? = 0 configure:5445: result: -I configure:5450: checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING configure:5458: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f90 configure:5461: $? = 0 configure:5467: result: yes configure:5470: checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV additions configure:5478: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f90 configure:5481: $? = 0 configure:5490: result: yes configure:5493: checking if Fortran compiler supports TS29113 standard extension configure:5501: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f90 configure:5504: $? = 0 configure:5513: result: yes configure:5532: checking whether F03 native code is desired configure:5540: result: yes configure:5561: checking whether fortran type sizes should be checked configure:5569: result: yes configure:5573: checking whether large file (> 2GB) tests should be run configure:5581: result: no configure:5598: checking whether benchmarks should be run (experimental) configure:5606: result: no configure:5620: checking where to put large temp files if large file tests are run configure:5629: result: . configure:5816: setting up libtool configure:5865: checking how to print strings configure:5892: result: printf configure:5913: checking for a sed that does not truncate output configure:5977: result: /bin/sed configure:5995: checking for grep that handles long lines and -e configure:6053: result: /bin/grep configure:6058: checking for egrep configure:6120: result: /bin/grep -E configure:6125: checking for fgrep configure:6187: result: /bin/grep -F configure:6222: checking for ld used by gcc configure:6289: result: /usr/bin/ld configure:6296: checking if the linker (/usr/bin/ld) is GNU ld configure:6311: result: yes configure:6323: checking for BSD- or MS-compatible name lister (nm) configure:6377: result: /usr/bin/nm -B configure:6507: checking the name lister (/usr/bin/nm -B) interface configure:6514: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6517: /usr/bin/nm -B "conftest.o" configure:6520: output 0000000000000000 B some_variable configure:6527: result: BSD nm configure:6530: checking whether ln -s works configure:6534: result: yes configure:6542: checking the maximum length of command line arguments configure:6673: result: 1572864 configure:6721: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:6761: result: func_convert_file_noop configure:6768: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:6788: result: func_convert_file_noop configure:6795: checking for /usr/bin/ld option to reload object files configure:6802: result: -r configure:6876: checking for objdump configure:6892: found /usr/bin/objdump configure:6903: result: objdump configure:6935: checking how to recognize dependent libraries configure:7135: result: pass_all configure:7220: checking for dlltool configure:7250: result: no configure:7280: checking how to associate runtime and link libraries configure:7307: result: printf %s\n configure:7367: checking for ar configure:7383: found /usr/bin/ar configure:7394: result: ar configure:7431: checking for archiver @FILE support configure:7448: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:7448: $? = 0 configure:7451: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:7454: $? = 0 configure:7459: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') ar: conftest.o: No such file or directory configure:7462: $? = 1 configure:7474: result: @ configure:7532: checking for strip configure:7548: found /usr/bin/strip configure:7559: result: strip configure:7631: checking for ranlib configure:7647: found /usr/bin/ranlib configure:7658: result: ranlib configure:7760: checking command to parse /usr/bin/nm -B output from gcc object configure:7913: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:7916: $? = 0 configure:7920: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:7923: $? = 0 configure:7989: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c conftstm.o >&5 configure:7992: $? = 0 configure:8030: result: ok configure:8077: checking for sysroot configure:8107: result: no configure:8114: checking for a working dd configure:8152: result: /bin/dd configure:8156: checking how to truncate binary pipes configure:8171: result: /bin/dd bs=4096 count=1 configure:8307: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:8310: $? = 0 configure:8500: checking for mt configure:8530: result: no configure:8550: checking if : is a manifest tool configure:8556: : '-?' configure:8564: result: no configure:9241: checking how to run the C preprocessor configure:9272: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:9272: $? = 0 configure:9286: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:14:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:9286: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.4.4" | #define PACKAGE_STRING "netCDF-Fortran 4.4.4" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.4.4" | #define HAVE_F2008 1 | #define HAVE_TS29113_SUPPORT 1 | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:9311: result: gcc -E configure:9331: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:9331: $? = 0 configure:9345: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:14:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:9345: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.4.4" | #define PACKAGE_STRING "netCDF-Fortran 4.4.4" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.4.4" | #define HAVE_F2008 1 | #define HAVE_TS29113_SUPPORT 1 | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:9374: checking for ANSI C header files configure:9394: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9394: $? = 0 configure:9467: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:9467: $? = 0 configure:9467: ./conftest configure:9467: $? = 0 configure:9478: result: yes configure:9491: checking for sys/types.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for sys/stat.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for stdlib.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for string.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for memory.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for strings.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for inttypes.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for stdint.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9491: checking for unistd.h configure:9491: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9491: $? = 0 configure:9491: result: yes configure:9505: checking for dlfcn.h configure:9505: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:9505: $? = 0 configure:9505: result: yes configure:9772: checking for objdir configure:9787: result: .libs configure:10051: checking if gcc supports -fno-rtti -fno-exceptions configure:10069: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fno-rtti -fno-exceptions conftest.c >&5 configure:10073: $? = 0 configure:10086: result: yes configure:10444: checking for gcc option to produce PIC configure:10451: result: -fPIC -DPIC configure:10459: checking if gcc PIC flag -fPIC -DPIC works configure:10477: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPIC -DPIC conftest.c >&5 configure:10481: $? = 0 configure:10494: result: yes configure:10523: checking if gcc static flag -static works configure:10551: result: yes configure:10566: checking if gcc supports -c -o file.o configure:10587: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o out/conftest2.o conftest.c >&5 configure:10591: $? = 0 configure:10613: result: yes configure:10621: checking if gcc supports -c -o file.o configure:10668: result: yes configure:10701: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11964: result: yes configure:12001: checking whether -lc should be explicitly linked in configure:12009: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:12012: $? = 0 configure:12027: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:12030: $? = 0 configure:12044: result: no configure:12204: checking dynamic linker characteristics configure:12785: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-rpath -Wl,/foo conftest.c >&5 configure:12785: $? = 0 configure:13034: result: GNU/Linux ld.so configure:13156: checking how to hardcode library paths into programs configure:13181: result: immediate configure:13729: checking whether stripping libraries is possible configure:13734: result: yes configure:13769: checking if libtool supports shared libraries configure:13771: result: yes configure:13774: checking whether to build shared libraries configure:13799: result: yes configure:13802: checking whether to build static libraries configure:13806: result: yes configure:13923: checking if libtool supports shared libraries configure:13925: result: yes configure:13928: checking whether to build shared libraries configure:13952: result: yes configure:13955: checking whether to build static libraries configure:13959: result: yes configure:14311: checking for gfortran option to produce PIC configure:14318: result: -fPIC configure:14326: checking if gfortran PIC flag -fPIC works configure:14344: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -fPIC conftest.f >&5 configure:14348: $? = 0 configure:14361: result: yes configure:14384: checking if gfortran static flag -static works configure:14412: result: yes configure:14424: checking if gfortran supports -c -o file.o configure:14445: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -o out/conftest2.o conftest.f >&5 configure:14449: $? = 0 configure:14471: result: yes configure:14476: checking if gfortran supports -c -o file.o configure:14523: result: yes configure:14553: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15766: result: yes configure:15907: checking dynamic linker characteristics configure:16658: result: GNU/Linux ld.so configure:16723: checking how to hardcode library paths into programs configure:16748: result: immediate configure:16885: checking if libtool supports shared libraries configure:16887: result: yes configure:16890: checking whether to build shared libraries configure:16914: result: yes configure:16917: checking whether to build static libraries configure:16921: result: yes configure:16955: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f90 >&5 configure:16958: $? = 0 configure:17436: checking for gfortran option to produce PIC configure:17443: result: -fPIC configure:17451: checking if gfortran PIC flag -fPIC works configure:17469: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -fPIC conftest.f90 >&5 configure:17473: $? = 0 configure:17486: result: yes configure:17509: checking if gfortran static flag -static works configure:17537: result: yes configure:17549: checking if gfortran supports -c -o file.o configure:17570: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -o out/conftest2.o conftest.f90 >&5 configure:17574: $? = 0 configure:17596: result: yes configure:17601: checking if gfortran supports -c -o file.o configure:17648: result: yes configure:17678: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:18891: result: yes configure:19032: checking dynamic linker characteristics configure:19783: result: GNU/Linux ld.so configure:19848: checking how to hardcode library paths into programs configure:19873: result: immediate configure:19934: finding other utilities configure:19940: trying to set fortran flags for this platform configure:19942: checking what FC is set to configure:19944: result: gfortran configure:19992: checking for special C compiler options needed for large files configure:20037: result: no configure:20043: checking for _FILE_OFFSET_BITS value needed for large files configure:20068: gcc -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:20068: $? = 0 configure:20100: result: no configure:20248: checking for /usr/bin/nm configure:20275: result: /usr/bin/nm -B configure:20288: checking nm flags configure:20293: result: configure:20305: checking for C-equivalent to Fortran routine "SUB" configure:20312: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f configure:20315: $? = 0 configure:20325: result: sub_ configure:20345: checking for Fortran "byte" configure:20353: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f configure:20356: $? = 0 configure:20358: result: yes configure:20376: checking for Fortran "integer*2" configure:20384: gfortran -c -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong conftest.f configure:20387: $? = 0 configure:20389: result: yes configure:20416: checking if Fortran "byte" is C "signed char" configure:20426: gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security conftest.c conftest.c:4:3: warning: implicitly declaring library function 'exit' with type 'void (int) __attribute__((noreturn))' [-Wimplicit-function-declaration] exit(values[1] != -2 || values[2] != -3); ^ conftest.c:4:3: note: include the header or explicitly provide a declaration for 'exit' 1 warning generated. configure:20429: $? = 0 configure:20432: gfortran -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -c conftestf.f configure:20435: $? = 0 configure:20438: gfortran -o conftest -g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wl,-z,relro -Wl,-z,now conftestf.o conftest.o /usr/bin/ld: conftest.o: relocation R_X86_64_PC32 against symbol `exit@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status configure:20441: $? = 1 configure:20464: error: Could not link conftestf.o and conftest.o ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set=set ac_cv_env_FCFLAGS_value='-g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong' ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value='-g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong' ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=yes ac_cv_fc_srcext_f90=none ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=mawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_DOT=dot ac_cv_prog_DOXYGEN=doxygen ac_cv_prog_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_F77=gfortran ac_cv_prog_ac_ct_FC=gfortran ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_f90_uppercase_mod=no ac_cv_prog_fc_g=yes ac_cv_prog_make_make_set=yes ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_target=x86_64-pc-linux-gnu am_cv_CC_dependencies_compiler_type=none am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_f90_modflag=-I lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_FC=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_compiler_static_works_FC=yes lt_cv_prog_gnu_ld=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /<>/netcdf-fortran-4.4.4+ds/missing aclocal-1.15' ALLOCA='' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /<>/netcdf-fortran-4.4.4+ds/missing autoconf' AUTOHEADER='${SHELL} /<>/netcdf-fortran-4.4.4+ds/missing autoheader' AUTOMAKE='${SHELL} /<>/netcdf-fortran-4.4.4+ds/missing automake-1.15' AWK='mawk' BUILD_BENCHMARKS_FALSE='' BUILD_BENCHMARKS_TRUE='#' BUILD_DAP_FALSE='' BUILD_DAP_TRUE='' BUILD_DLL_FALSE='' BUILD_DLL_TRUE='' BUILD_DOCS_FALSE='#' BUILD_DOCS_TRUE='' BUILD_F03_FALSE='#' BUILD_F03_TRUE='' BUILD_INTERNAL_DOCS='no' BUILD_PARALLEL_FALSE='' BUILD_PARALLEL_TRUE='' BUILD_V2_FALSE='' BUILD_V2_TRUE='' CC='gcc' CCDEPMODE='depmode=none' CFLAGS='-g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security' CPP='gcc -E' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL='false' DOT='dot' DOXYGEN='doxygen' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' EXTRA_EXAMPLE_TESTS_FALSE='' EXTRA_EXAMPLE_TESTS_TRUE='' EXTRA_TESTS_FALSE='' EXTRA_TESTS_TRUE='#' F77='gfortran' FC='gfortran' FCFLAGS='-g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong' FCFLAGS_f90='' FFLAGS='-g -O2 -fdebug-prefix-map=/<>/netcdf-fortran-4.4.4+ds=. -fstack-protector-strong' FGREP='/bin/grep -F' GREP='/bin/grep' HAS_DAP='' HAS_F03='' HAS_F90='' HAS_NC2='' HAS_NC4='' HAVE_DOT='YES' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LARGE_FILE_TESTS_FALSE='' LARGE_FILE_TESTS_TRUE='#' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-Wl,-z,relro -Wl,-z,now' LIBOBJS='' LIBS='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /<>/netcdf-fortran-4.4.4+ds/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' MOD_FLAG='-I' NC_FLIBS='' NC_LIBS='' NM='/usr/bin/nm -B' NMEDIT='' NMFLAGS='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='netcdf-fortran' PACKAGE_BUGREPORT='support-netcdf@unidata.ucar.edu' PACKAGE_NAME='netCDF-Fortran' PACKAGE_STRING='netCDF-Fortran 4.4.4' PACKAGE_TARNAME='netcdf-fortran' PACKAGE_URL='' PACKAGE_VERSION='4.4.4' PATH_SEPARATOR=':' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/bash' STRIP='strip' TEST_PARALLEL_FALSE='' TEST_PARALLEL_TRUE='' UPPER_CASE_MOD_FALSE='' UPPER_CASE_MOD_TRUE='' USE_LOGGING_FALSE='' USE_LOGGING_TRUE='' USE_NETCDF4_FALSE='' USE_NETCDF4_TRUE='' USE_VALGRIND_TESTS_FALSE='' USE_VALGRIND_TESTS_TRUE='' VERSION='4.4.4' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_DUMPBIN='' ac_ct_F77='gfortran' ac_ct_FC='gfortran' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/netcdf-fortran-4.4.4+ds/install-sh' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${prefix}/lib/x86_64-linux-gnu' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target='x86_64-pc-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='pc' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "netCDF-Fortran" #define PACKAGE_TARNAME "netcdf-fortran" #define PACKAGE_VERSION "4.4.4" #define PACKAGE_STRING "netCDF-Fortran 4.4.4" #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" #define PACKAGE_URL "" #define PACKAGE "netcdf-fortran" #define VERSION "4.4.4" #define HAVE_F2008 1 #define HAVE_TS29113_SUPPORT 1 #define TEMP_LARGE "." #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define pgiFortran 1 #define NF_INT1_T byte #define NF_INT2_T integer*2 configure: exit 1 dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen --enable-dot returned exit code 1 debian/rules:22: recipe for target 'override_dh_auto_configure' failed make[1]: *** [override_dh_auto_configure] Error 2 make[1]: Leaving directory '/<>/netcdf-fortran-4.4.4+ds' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T19:27:01Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 10580 Build-Time: 11 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 12 Job: netcdf-fortran_4.4.4+ds-2 Machine Architecture: amd64 Package: netcdf-fortran Package-Time: 43 Source-Version: 4.4.4+ds-2 Space: 10580 Status: attempted Version: 4.4.4+ds-2 -------------------------------------------------------------------------------- Finished at 2017-07-06T19:27:01Z Build needed 00:00:43, 10580k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 44.476500643s DC-Time-Estimation: 44.476500643 versus expected 498 (r/m: 10.196924056532726 ; m: 44.476500643)